Query psy15628
Match_columns 90
No_of_seqs 105 out of 282
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 17:34:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15628.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15628hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nh8a2 d.58.5.3 (A:211-284) A 33.0 19 0.0013 20.9 3.0 27 7-33 34-60 (74)
2 d2cz4a1 d.58.5.1 (A:1-100) Hyp 25.4 23 0.0017 20.7 2.5 27 7-33 3-29 (100)
3 d1h3da2 d.58.5.3 (A:225-299) A 24.8 22 0.0016 20.6 2.3 28 6-33 34-61 (75)
4 d1r7la_ d.277.1.1 (A:) Bacillu 24.6 16 0.0012 22.2 1.7 25 19-43 48-72 (103)
5 d1n0ua5 d.58.11.1 (A:726-842) 19.3 59 0.0043 19.1 3.6 35 8-42 1-36 (117)
6 d2bgxa1 a.20.1.1 (A:180-260) P 18.0 7.6 0.00056 22.9 -1.0 12 44-55 48-59 (81)
7 d1o70a2 b.118.1.1 (A:468-624) 18.0 33 0.0024 20.4 2.2 16 11-26 34-49 (157)
8 d2csua1 c.2.1.8 (A:1-129) Acet 17.6 25 0.0018 21.4 1.5 32 8-39 63-94 (129)
9 d1y0ka1 c.52.1.31 (A:1-209) Hy 15.5 29 0.0021 23.5 1.5 26 28-53 135-160 (209)
10 d2k57a1 b.38.1.6 (A:2-53) Unch 15.1 24 0.0018 19.3 0.8 25 31-55 25-49 (52)
No 1
>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=32.98 E-value=19 Score=20.92 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=24.2
Q ss_pred ccCCceEEEEeccchHHHHHHhhhhcc
Q psy15628 7 SEEMALCQLFIQPEAAYSSVSTLGEAG 33 (90)
Q Consensus 7 SE~M~l~qL~ip~E~A~~~v~eLG~lg 33 (90)
.++|.-++.+++.+..|+++.+|=+.|
T Consensus 34 ~~~wvAV~~vv~e~~v~~~i~~Lk~~G 60 (74)
T d1nh8a2 34 DPDWVAIRALVPRRDVNGIMDELAAIG 60 (74)
T ss_dssp STTEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEeHHHHHHHHHHHHHcC
Confidence 467888999999999999999998877
No 2
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus thermophilus [TaxId: 274]}
Probab=25.36 E-value=23 Score=20.75 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=23.7
Q ss_pred ccCCceEEEEeccchHHHHHHhhhhcc
Q psy15628 7 SEEMALCQLFIQPEAAYSSVSTLGEAG 33 (90)
Q Consensus 7 SE~M~l~qL~ip~E~A~~~v~eLG~lg 33 (90)
..+|.+..++++++.+.+....|-+.|
T Consensus 3 ~~~mK~v~iIv~~~~~~~v~~~L~~~G 29 (100)
T d2cz4a1 3 LVPLKLVTIVAESLLEKRLVEEVKRLG 29 (100)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred ccceEEEEEEECHHHHHHHHHHHHHCC
Confidence 357999999999999999888888887
No 3
>d1h3da2 d.58.5.3 (A:225-299) ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.85 E-value=22 Score=20.56 Aligned_cols=28 Identities=7% Similarity=0.164 Sum_probs=19.7
Q ss_pred cccCCceEEEEeccchHHHHHHhhhhcc
Q psy15628 6 RSEEMALCQLFIQPEAAYSSVSTLGEAG 33 (90)
Q Consensus 6 RSE~M~l~qL~ip~E~A~~~v~eLG~lg 33 (90)
..++|.-++.+++.+..|+++.+|=+.|
T Consensus 34 ~~~~wvAV~~vv~e~~v~~~i~~Lk~~G 61 (75)
T d1h3da2 34 GDQQRVAMHMVSSETLFWETMEKLKALG 61 (75)
T ss_dssp -------BEEEESSCCCHHHHHHHHHTT
T ss_pred CCCCEEEEEEEEchHHHHHHHHHHHHcC
Confidence 4578888999999999999999998776
No 4
>d1r7la_ d.277.1.1 (A:) Bacillus phage protein {Bacillus cereus [TaxId: 1396]}
Probab=24.63 E-value=16 Score=22.22 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=22.3
Q ss_pred cchHHHHHHhhhhccceEEeecCCC
Q psy15628 19 PEAAYSSVSTLGEAGIVQFRDVSIT 43 (90)
Q Consensus 19 ~E~A~~~v~eLG~lg~vqF~DlN~~ 43 (90)
-|+||++|..|.---.|.-.||.|.
T Consensus 48 iesawqvvekleydvkvtktdlkpk 72 (103)
T d1r7la_ 48 IESAWQVVEKLEYDVKVTKTDLKPK 72 (103)
T ss_dssp HHHHHHHHHHSSSEEEEEECSSSSS
T ss_pred hHHHHHHHHHhhheeeEeeccCCcc
Confidence 3899999999999889999999885
No 5
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.26 E-value=59 Score=19.13 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=27.6
Q ss_pred cCCceEEEEeccchHHHHHHhhhhc-cceEEeecCC
Q psy15628 8 EEMALCQLFIQPEAAYSSVSTLGEA-GIVQFRDVSI 42 (90)
Q Consensus 8 E~M~l~qL~ip~E~A~~~v~eLG~l-g~vqF~DlN~ 42 (90)
|+|-.+++.+|.|..-.+++.|.+. |.|.-.|..+
T Consensus 1 EPi~~v~I~~p~e~~G~V~~~l~~rRG~i~~~~~~~ 36 (117)
T d1n0ua5 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRP 36 (117)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC--
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHcCCeEeeeeecC
Confidence 6788899999999999999999855 7776666543
No 6
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.04 E-value=7.6 Score=22.88 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=9.8
Q ss_pred ccccccccccCc
Q psy15628 44 LDTQFNRFQEER 55 (90)
Q Consensus 44 v~~fqR~f~~eI 55 (90)
|.+|||+|..+.
T Consensus 48 i~AFQrhFRp~~ 59 (81)
T d2bgxa1 48 IMAFQMHFRPTL 59 (81)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHccccc
Confidence 679999998764
No 7
>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=18.02 E-value=33 Score=20.42 Aligned_cols=16 Identities=6% Similarity=0.264 Sum_probs=14.1
Q ss_pred ceEEEEeccchHHHHH
Q psy15628 11 ALCQLFIQPEAAYSSV 26 (90)
Q Consensus 11 ~l~qL~ip~E~A~~~v 26 (90)
..+++|.|.+.||+-+
T Consensus 34 ~~~TvFaPtn~Af~~l 49 (157)
T d1o70a2 34 RRFTYFVPRDKGWQKT 49 (157)
T ss_dssp SEEEEEEECHHHHHHH
T ss_pred CceEEEecCHHHHHHh
Confidence 4789999999999875
No 8
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=17.60 E-value=25 Score=21.35 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=26.6
Q ss_pred cCCceEEEEeccchHHHHHHhhhhccceEEee
Q psy15628 8 EEMALCQLFIQPEAAYSSVSTLGEAGIVQFRD 39 (90)
Q Consensus 8 E~M~l~qL~ip~E~A~~~v~eLG~lg~vqF~D 39 (90)
++..++-+++|.+.+-+++.++++.|.=...=
T Consensus 63 ~~vDlvvi~vp~~~~~~~~~~~~~~g~~~~vi 94 (129)
T d2csua1 63 DEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVI 94 (129)
T ss_dssp SCCSEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEecChHHhHHHHHHHHHcCCCEEEE
Confidence 46778999999999999999999999544443
No 9
>d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.47 E-value=29 Score=23.48 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=21.6
Q ss_pred hhhhccceEEeecCCCcccccccccc
Q psy15628 28 TLGEAGIVQFRDVSITLDTQFNRFQE 53 (90)
Q Consensus 28 eLG~lg~vqF~DlN~~v~~fqR~f~~ 53 (90)
.||++.++-|..|-.+|.-++-+|-.
T Consensus 135 dlgeld~iaf~~lkr~v~d~ns~fpp 160 (209)
T d1y0ka1 135 DHGELDLLAFVNLKRAVPDFNTPFPP 160 (209)
T ss_dssp CGGGCEEEEEEECSSEEEETTSCCCC
T ss_pred CchhhhHHHHHHHHHhhcccCCCCCC
Confidence 38999999999988888888877643
No 10
>d2k57a1 b.38.1.6 (A:2-53) Uncharacterized protein PSPPH2109 {Pseudomonas syringae [TaxId: 317]}
Probab=15.10 E-value=24 Score=19.27 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=18.8
Q ss_pred hccceEEeecCCCccccccccccCc
Q psy15628 31 EAGIVQFRDVSITLDTQFNRFQEER 55 (90)
Q Consensus 31 ~lg~vqF~DlN~~v~~fqR~f~~eI 55 (90)
+-|++.|.|++......+|.=+++|
T Consensus 25 dtG~y~y~d~~G~~~qIn~d~V~~i 49 (52)
T d2k57a1 25 ESGFYEFKQLDGKQTRINKDQVRTV 49 (52)
T ss_dssp TTCEEEEEBTTSCEEEEETTTEEEE
T ss_pred CCCCEEEEcCCCCEEEEcHHHhhhh
Confidence 3489999999988777777655544
Done!