RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15628
         (90 letters)



>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  This
          family consists of the 116kDa V-type ATPase (vacuolar
          (H+)-ATPases) subunits, as well as V-type ATP synthase
          subunit i. The V-type ATPases family are proton pumps
          that acidify intracellular compartments in eukaryotic
          cells for example yeast central vacuoles,
          clathrin-coated and synaptic vesicles. They have
          important roles in membrane trafficking processes. The
          116kDa subunit (subunit a) in the V-type ATPase is part
          of the V0 functional domain responsible for proton
          transport. The a subunit is a transmembrane
          glycoprotein with multiple putative transmembrane
          helices it has a hydrophilic amino terminal and a
          hydrophobic carboxy terminal. It has roles in proton
          transport and assembly of the V-type ATPase complex.
          This subunit is encoded by two homologous gene in yeast
          VPH1 and STV1.
          Length = 707

 Score = 30.4 bits (69), Expect = 0.095
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 26 VSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCVSSSR 63
          V  LGE G+VQ RD++  +     +F  E   C    R
Sbjct: 1  VDALGELGLVQIRDLNEDVSAFQRKFVNEVRRCDEVER 38


>gnl|CDD|225901 COG3366, COG3366, Uncharacterized protein conserved in archaea
          [Function unknown].
          Length = 311

 Score = 25.8 bits (57), Expect = 3.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 16 FIQPEAAYSSVSTLGEAGIVQFRDVSITL 44
          F+ P A  S +S   + G +  R+V +  
Sbjct: 64 FVSPTAGNSMLSEFYKEGKLNEREVIVAS 92


>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
          production and conversion].
          Length = 660

 Score = 25.8 bits (57), Expect = 3.8
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 5  FRSEEMALCQLFIQPEAAYSSVSTLGEAGIVQFRDVSITLD 45
           R E+M    +          ++ L + G+V   D+     
Sbjct: 1  MRPEKMKKVSIIGLKSELDPVLAELHDFGLVHLEDLEEGEK 41


>gnl|CDD|240297 PTZ00159, PTZ00159, 60S ribosomal protein L32; Provisional.
          Length = 133

 Score = 25.3 bits (56), Expect = 4.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 45 DTQFNRFQEERPMCVSSS 62
            +F RFQ ER   V  S
Sbjct: 15 TKKFTRFQSERFPRVKPS 32


>gnl|CDD|132995 cd00218, GlcAT-I, Beta1,3-glucuronyltransferase I (GlcAT-I) is
           involved in the initial steps of proteoglycan synthesis.
            Beta1,3-glucuronyltransferase I (GlcAT-I) domain;
           GlcAT-I is a Key enzyme involved in the initial steps of
           proteoglycan synthesis. GlcAT-I catalyzes the transfer
           of a glucuronic acid moiety from the uridine
           diphosphate-glucuronic acid (UDP-GlcUA) to the common
           linkage region of trisaccharide
           Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl  of proteoglycans. The
           enzyme has two subdomains that bind the donor and
           acceptor substrate separately.  The active site is
           located at the cleft between both subdomains in which
           the trisaccharide molecule is oriented perpendicular to
           the UDP. This family has been classified as
           Glycosyltransferase family 43 (GT-43).
          Length = 223

 Score = 24.9 bits (55), Expect = 6.7
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 22/57 (38%)

Query: 33  GIVQFRDVSITLDTQFNRFQE--------------------ERPMCVSSSRVDWNTS 69
           G+V F D   T D +   F+E                    E P+C +   V W+T+
Sbjct: 97  GVVYFADDDNTYDLEL--FEEMRKIKRVGVWPVGLVGGLRVEGPVCENGKVVGWHTA 151


>gnl|CDD|129652 TIGR00561, pntA, NAD(P) transhydrogenase, alpha subunit.  This
           integral membrane protein is the alpha subunit of alpha
           2 beta 2 tetramer that couples the proton transport
           across the membrane to the reversible transfer of
           hydride ion equivalents between NAD and NADP. An
           alternate name is pyridine nucleotide transhydrogenase
           alpha subunit. The N-terminal region is homologous to
           alanine dehydrogenase. In some species, such as
           Rhodospirillum rubrum, the alpha chain is replaced by
           two shorter chains, both with some homology to the
           full-length alpha chain modeled here. These score below
           the trusted cutoff [Energy metabolism, Electron
           transport].
          Length = 511

 Score = 24.9 bits (54), Expect = 7.6
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 58  CVSSSRVDWNTSHAFRHTPFV 78
           CV    V WN SHA  HTP +
Sbjct: 434 CVVGYYVVWNVSHAL-HTPLM 453


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,371,762
Number of extensions: 323684
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 10
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.3 bits)