RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15628
         (90 letters)



>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
          subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
          {Meiothermus ruber}
          Length = 357

 Score = 54.4 bits (130), Expect = 2e-10
 Identities = 9/63 (14%), Positives = 20/63 (31%)

Query: 2  GAMFRSEEMALCQLFIQPEAAYSSVSTLGEAGIVQFRDVSITLDTQFNRFQEERPMCVSS 61
          G +   ++M    +      A   ++ L +AG+V    +      ++     E       
Sbjct: 6  GTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRW 65

Query: 62 SRV 64
            V
Sbjct: 66 EAV 68


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.10
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 57  MCVSSSRVDWNTSHAFRHTPFVK-GLGITLPLGSI 90
            C+    V W T+  F+ T  +  G G    LG +
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515


>4dnh_A Uncharacterized protein; structural genomics, PSI-biology,
          protein structure initiati YORK structural genomics
          research consortium; 2.50A {Sinorhizobium meliloti}
          Length = 396

 Score = 25.4 bits (55), Expect = 3.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 60 SSSRVDWNTSHAFRHTPFVKGLGITLPLGS 89
           +  +DW  + AFRH  +  GLG+   + +
Sbjct: 55 LAPAIDWERTLAFRHRLWDLGLGVAESMDT 84


>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
           HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
          Length = 1014

 Score = 25.2 bits (55), Expect = 3.8
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 19  PEAAYSSVSTLGEAGIVQFRD 39
               YSS     E  I +F++
Sbjct: 546 LTGMYSSDPKNPEKRIAEFKN 566


>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
           1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
          Length = 714

 Score = 24.6 bits (54), Expect = 5.3
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 19  PEAAYSSVSTLGEAGIVQFRD 39
               YSS     E  I +F++
Sbjct: 239 LTGMYSSDPKNPEKRIAEFKN 259


>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
           biosynthesis, transferase, glycosyltransferase, gluta
           amidotransferase; HET: PIN; 2.00A {Escherichia coli}
           SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
           1ecj_A*
          Length = 504

 Score = 24.0 bits (53), Expect = 7.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 11  ALCQLFIQPEAAYSSVSTLGEAGIVQFRD 39
           A+         AY+ V+ +   G+V FRD
Sbjct: 155 AIAATNRLIRGAYACVAMIIGHGMVAFRD 183


>1u58_A MHC-I homolog M144; MCMV, MHC-I homolog, immune system; 1.90A
          {Murid herpesvirus 1} SCOP: b.1.1.2 d.19.1.1 PDB:
          1pqz_A
          Length = 253

 Score = 24.0 bits (52), Expect = 8.8
 Identities = 5/46 (10%), Positives = 9/46 (19%), Gaps = 9/46 (19%)

Query: 23 YSSVSTLGEAGIVQFRDVSITLDTQFNRF--QEERPMCVSSSRVDW 66
          Y+ V     A   +           F  +   +            W
Sbjct: 15 YTLVVDGT-ANTRRCFGTGHVDGEAFVGYSNNKTHG------IGRW 53


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,292,892
Number of extensions: 58234
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 8
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.8 bits)