BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1563
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 86/129 (66%), Gaps = 4/129 (3%)
Query: 23 LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG 82
L+LSTN IEKIS L ++ LRIL+LGRN+IK L+ + D LEELWISYN I GI
Sbjct: 53 LALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 112
Query: 83 SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV----ENLEESAYRVEIKKR 138
L L+VLYM +N + WGE++K+ LEDL+ GNP+ EN S YR+E+ KR
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172
Query: 139 LPRLKKLDG 147
LP LKKLDG
Sbjct: 173 LPNLKKLDG 181
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 86/129 (66%), Gaps = 4/129 (3%)
Query: 23 LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG 82
L+LSTN IEKIS L ++ LRIL+LGRN+IK L+ + D LEELWISYN I GI
Sbjct: 54 LALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 113
Query: 83 SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV----ENLEESAYRVEIKKR 138
L L+VLYM +N + WGE++K+ LEDL+ GNP+ EN S YR+E+ KR
Sbjct: 114 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 173
Query: 139 LPRLKKLDG 147
LP LKKLDG
Sbjct: 174 LPNLKKLDG 182
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 72 YNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL-EESA 130
Y + + + LK+L + N +K EL+KI LE+L GN + + ++S
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLSDTFRDQST 241
Query: 131 YRVEIKKRLPRLKKLDGEVLP 151
Y I++R P+L +LDG LP
Sbjct: 242 YISAIRERFPKLLRLDGHELP 262
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 72 YNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL-EESA 130
Y + + + LK+L + N +K EL+KI LE+L GN + + ++S
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQST 241
Query: 131 YRVEIKKRLPRLKKLDGEVLP 151
Y I++R P+L +LDG LP
Sbjct: 242 YISAIRERFPKLLRLDGHELP 262
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 72 YNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL-EESA 130
Y + + + LK+L + N +K EL+KI LE+L GN + + ++S
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQST 241
Query: 131 YRVEIKKRLPRLKKLDGEVLP 151
Y I++R P+L +LDG LP
Sbjct: 242 YISAIRERFPKLLRLDGHELP 262
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 72 YNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL-EESA 130
Y + + + LK+L + N +K EL+KI LE+L GN + + ++S
Sbjct: 177 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQST 235
Query: 131 YRVEIKKRLPRLKKLDGEVLP 151
Y I++R P+L +LDG LP
Sbjct: 236 YISAIRERFPKLLRLDGHELP 256
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 72 YNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL-EESA 130
Y + + + LK+L + N +K EL+KI LE+L GN + + ++S
Sbjct: 177 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQST 235
Query: 131 YRVEIKKRLPRLKKLDGEVLP 151
Y I++R P+L +LDG LP
Sbjct: 236 YISAIRERFPKLLRLDGHELP 256
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 23 LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG 82
L +S N +EK+ L + L+I+ + N +K L P LE + N +E+ +
Sbjct: 136 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEELPELQ 192
Query: 83 SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128
+L L +Y +NS+K K+ D P+ + + GN I+E L E
Sbjct: 193 NLPFLTAIYADNNSLK------KLPDLPLSLESIVAGNNILEELPE 232
Score = 32.3 bits (72), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 40 KKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKE 99
+ L+ L + N +K + L PL LE L +S N +EK + + LK++ + +NS+K
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPL---LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK- 166
Query: 100 WGELNKINDCPVLEDLVFCGNPIVENLEE 128
K+ D P + + GN +E L E
Sbjct: 167 -----KLPDLPPSLEFIAAGNNQLEELPE 190
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 64 CLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123
CLE L S N +E G+ +L +L+ L +C+N +++ + + CP L L GN +
Sbjct: 487 CLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Query: 124 ENLEESAYRVEIKKRLPRLKKL 145
+E + + + LP + +
Sbjct: 547 ---QEEGIQERLAEMLPSVSSI 565
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 64 CLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123
CLE L S N +E G+ +L +L+ L +C+N +++ + + CP L L GN +
Sbjct: 487 CLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Query: 124 ENLEESAYRVEIKKRLPRLKKL 145
+E + + + LP + +
Sbjct: 547 ---QEEGIQERLAEMLPSVSSI 565
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + + L KL
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQIRRIVPLARLTKL 178
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 179 QNLYLSKNHISDLRALRGLKNLDVLE 204
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAGLTKL 180
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDVLE 206
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAGLTKL 178
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 179 QNLYLSKNHISDLRALAGLKNLDVLE 204
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 142 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAGLTKL 200
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 201 QNLYLSKNHISDLRALAGLKNLDVLE 226
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAGLTKL 198
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLE 224
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAGLTKL 198
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLE 224
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAGLTKL 175
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 176 QNLYLSKNHISDLRALAGLKNLDVLE 201
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAGLTKL 198
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLE 224
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 36.6 bits (83), Expect = 0.006, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAGLTKL 177
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 178 QNLYLSKNHISDLRALAGLKNLDVLE 203
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAGLTKL 180
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDVLE 206
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 28 NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87
N I I+GL+ L +L L LG N I T L L L+ L + N I + L KL
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLACLTKL 175
Query: 88 KVLYMCHNSVKEWGELNKINDCPVLE 113
+ LY+ N + + L + + VLE
Sbjct: 176 QNLYLSKNHISDLRALCGLKNLDVLE 201
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFI--EKT 78
T L + TN I I+ + L KL+ L +G N I + L L L L+++ N + E
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQ-LNSLFLNNNQLGNEDX 304
Query: 79 KGIGSLKKLKVLYMCHNSVKE 99
+ IG L L L++ N + +
Sbjct: 305 EVIGGLTNLTTLFLSQNHITD 325
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 41 KLRILALGRNMIKT--FTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVK 98
+++ L L N I T F L D LE L + YNFI KG KLK L + N +
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Query: 99 EWG 101
G
Sbjct: 205 FMG 207
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.0 bits (66), Expect = 0.48, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 41 KLRILALGRNMIKT--FTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVK 98
+++ L L N I T F L D LE L + YNFI KG KLK L + N +
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Query: 99 EWG 101
G
Sbjct: 205 FMG 207
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 24/124 (19%)
Query: 23 LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG 82
+ S N I K+ G L++L+ L + N I +G+ L++
Sbjct: 47 IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR------IGEGLDQ--------------- 85
Query: 83 SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRL 142
+L L L + +NS+ E G+L+ + L L NP+ + YR+ + ++P++
Sbjct: 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT---NKKHYRLYVIYKVPQV 142
Query: 143 KKLD 146
+ LD
Sbjct: 143 RVLD 146
>pdb|2Y26|A Chain A, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|B Chain B, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|C Chain C, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|D Chain D, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|E Chain E, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|F Chain F, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|G Chain G, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|H Chain H, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|I Chain I, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|J Chain J, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|K Chain K, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|L Chain L, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|M Chain M, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|N Chain N, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|O Chain O, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|P Chain P, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|Q Chain Q, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|R Chain R, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|S Chain S, Transmission Defective Mutant Of Grapevine Fanleaf Virus
pdb|2Y26|T Chain T, Transmission Defective Mutant Of Grapevine Fanleaf Virus
Length = 504
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 14 FKGPNPNTKLSLSTNLIE-KISGLMSLKKLRILALGR 49
F G NPNT+ SL + + K+ S+K LR+L R
Sbjct: 455 FAGANPNTRFSLYSRWMAIKLDQAKSIKVLRVLCKPR 491
>pdb|2Y7T|A Chain A, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|B Chain B, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|C Chain C, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|D Chain D, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|E Chain E, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|F Chain F, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|G Chain G, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|H Chain H, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|I Chain I, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|J Chain J, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|K Chain K, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|L Chain L, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|M Chain M, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|N Chain N, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|O Chain O, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|P Chain P, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|Q Chain Q, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|R Chain R, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|S Chain S, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7T|T Chain T, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|A Chain A, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|B Chain B, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|C Chain C, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|D Chain D, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|E Chain E, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|F Chain F, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|G Chain G, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|H Chain H, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|I Chain I, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|J Chain J, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|K Chain K, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|L Chain L, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|M Chain M, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|N Chain N, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|O Chain O, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|P Chain P, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|Q Chain Q, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|R Chain R, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|S Chain S, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7U|T Chain T, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|A Chain A, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|B Chain B, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|C Chain C, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|D Chain D, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|E Chain E, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|F Chain F, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|G Chain G, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|H Chain H, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|I Chain I, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|J Chain J, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|K Chain K, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|L Chain L, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|M Chain M, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|N Chain N, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|O Chain O, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|P Chain P, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|Q Chain Q, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|R Chain R, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|S Chain S, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2Y7V|T Chain T, X-Ray Structure Of The Grapevine Fanleaf Virus
pdb|2YI2|A Chain A, Grapevine Fanleaf Virus
pdb|2YI2|B Chain B, Grapevine Fanleaf Virus
pdb|2YI2|C Chain C, Grapevine Fanleaf Virus
pdb|2YI2|D Chain D, Grapevine Fanleaf Virus
pdb|2YI2|E Chain E, Grapevine Fanleaf Virus
pdb|2YI2|F Chain F, Grapevine Fanleaf Virus
pdb|2YI2|G Chain G, Grapevine Fanleaf Virus
pdb|2YI2|H Chain H, Grapevine Fanleaf Virus
pdb|2YI2|I Chain I, Grapevine Fanleaf Virus
pdb|2YI2|J Chain J, Grapevine Fanleaf Virus
pdb|2YI2|K Chain K, Grapevine Fanleaf Virus
pdb|2YI2|L Chain L, Grapevine Fanleaf Virus
pdb|2YI2|M Chain M, Grapevine Fanleaf Virus
pdb|2YI2|N Chain N, Grapevine Fanleaf Virus
pdb|2YI2|O Chain O, Grapevine Fanleaf Virus
pdb|2YI2|P Chain P, Grapevine Fanleaf Virus
pdb|2YI2|Q Chain Q, Grapevine Fanleaf Virus
pdb|2YI2|R Chain R, Grapevine Fanleaf Virus
pdb|2YI2|S Chain S, Grapevine Fanleaf Virus
pdb|2YI2|T Chain T, Grapevine Fanleaf Virus
pdb|2YI3|A Chain A, Grapevine Fanleaf Virus
pdb|2YI3|B Chain B, Grapevine Fanleaf Virus
pdb|2YI3|C Chain C, Grapevine Fanleaf Virus
pdb|2YI3|D Chain D, Grapevine Fanleaf Virus
pdb|2YI3|E Chain E, Grapevine Fanleaf Virus
pdb|2YI3|F Chain F, Grapevine Fanleaf Virus
pdb|2YI3|G Chain G, Grapevine Fanleaf Virus
pdb|2YI3|H Chain H, Grapevine Fanleaf Virus
pdb|2YI3|I Chain I, Grapevine Fanleaf Virus
pdb|2YI3|J Chain J, Grapevine Fanleaf Virus
pdb|2YI3|K Chain K, Grapevine Fanleaf Virus
pdb|2YI3|L Chain L, Grapevine Fanleaf Virus
pdb|2YI3|M Chain M, Grapevine Fanleaf Virus
pdb|2YI3|N Chain N, Grapevine Fanleaf Virus
pdb|2YI3|O Chain O, Grapevine Fanleaf Virus
pdb|2YI3|P Chain P, Grapevine Fanleaf Virus
pdb|2YI3|Q Chain Q, Grapevine Fanleaf Virus
pdb|2YI3|R Chain R, Grapevine Fanleaf Virus
pdb|2YI3|S Chain S, Grapevine Fanleaf Virus
pdb|2YI3|T Chain T, Grapevine Fanleaf Virus
pdb|2YI4|A Chain A, Grapevine Fanleaf Virus
pdb|2YI4|B Chain B, Grapevine Fanleaf Virus
pdb|2YI4|C Chain C, Grapevine Fanleaf Virus
pdb|2YI4|D Chain D, Grapevine Fanleaf Virus
pdb|2YI4|E Chain E, Grapevine Fanleaf Virus
pdb|2YI4|F Chain F, Grapevine Fanleaf Virus
pdb|2YI4|G Chain G, Grapevine Fanleaf Virus
pdb|2YI4|H Chain H, Grapevine Fanleaf Virus
pdb|2YI4|I Chain I, Grapevine Fanleaf Virus
pdb|2YI4|J Chain J, Grapevine Fanleaf Virus
pdb|2YI4|K Chain K, Grapevine Fanleaf Virus
pdb|2YI4|L Chain L, Grapevine Fanleaf Virus
pdb|2YI4|M Chain M, Grapevine Fanleaf Virus
pdb|2YI4|N Chain N, Grapevine Fanleaf Virus
pdb|2YI4|O Chain O, Grapevine Fanleaf Virus
pdb|2YI4|P Chain P, Grapevine Fanleaf Virus
pdb|2YI4|Q Chain Q, Grapevine Fanleaf Virus
pdb|2YI4|R Chain R, Grapevine Fanleaf Virus
pdb|2YI4|S Chain S, Grapevine Fanleaf Virus
pdb|2YI4|T Chain T, Grapevine Fanleaf Virus
Length = 504
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 14 FKGPNPNTKLSLSTNLIE-KISGLMSLKKLRILALGR 49
F G NPNT+ SL + + K+ S+K LR+L R
Sbjct: 455 FAGANPNTRFSLYSRWMAIKLDQAKSIKVLRVLCKPR 491
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
Length = 300
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 77 KTKGIGSLKKLKVLYMCHNSVKE-WGELNKINDCPVL------------EDLVFCGNPIV 123
+T+G GS+K + + HN++KE G+ I +L E+LV CG PI+
Sbjct: 15 QTQGPGSMK-ISFSEIIHNALKEDLGDKGDITTNSILINEKVNFAINTRENLVVCGIPIL 73
Query: 124 E---NLEESAYRVEIKKR 138
E N+ + + EI K+
Sbjct: 74 EEVFNMNKEHVKYEIHKK 91
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 52 IKTFTGLEPLGDCLEEL-----WISYNFIEKTKGIGSLKKLKVLYMCHNSV 97
+K F G++ +GDC++ L + S++ ++K G+ + +VLY +S
Sbjct: 24 VKNFMGVKHIGDCMKALINGTIYTSFSPVKKVSGL-VISNERVLYAGDSST 73
>pdb|1GXJ|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXJ|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXK|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|C Chain C, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|D Chain D, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
Length = 186
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 107 NDCPVLEDLVFCGNPIVENLEESAYRVEIKKRL-PRLKKLDGEVLP 151
+D VL +F + +VE L++ A R++ K RL R+ LDGE++
Sbjct: 120 SDLEVLGGFLFGNSVVVETLDD-AIRMKKKYRLNTRIATLDGELIS 164
>pdb|1GXL|A Chain A, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|B Chain B, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|C Chain C, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|D Chain D, Smc Hinge Domain From T. Maritima With Coiled Coil
Length = 213
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 107 NDCPVLEDLVFCGNPIVENLEESAYRVEIKKRL-PRLKKLDGEVLP 151
+D VL +F + +VE L++ A R++ K RL R+ LDGE++
Sbjct: 132 SDLEVLGGFLFGNSVVVETLDD-AIRMKKKYRLNTRIATLDGELIS 176
>pdb|4H2K|A Chain A, Crystal Structure Of The Catalytic Domain Of
Succinyl-Diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|4H2K|B Chain B, Crystal Structure Of The Catalytic Domain Of
Succinyl-Diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 269
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 75 IEKTKGI-------GSLKKLKVLYMCHNSVKEWGELN----KINDCPVLEDLVFCG 119
IE+T GI G + + + V E+G LN K+N+C +EDL CG
Sbjct: 201 IEETIGITPKAETGGGTSDGRFIALMGAEVVEFGPLNSTIHKVNECVSVEDLGKCG 256
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 75 IEKTKGI-------GSLKKLKVLYMCHNSVKEWGELN----KINDCPVLEDLVFCG 119
IE+T GI G + + + V E+G LN K+N+C +EDL CG
Sbjct: 309 IEETIGITPKAETGGGTSDGRFIALMGAEVVEFGPLNSTIHKVNECVSVEDLGKCG 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,615,413
Number of Sequences: 62578
Number of extensions: 177651
Number of successful extensions: 354
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 72
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)