Query psy1563
Match_columns 152
No_of_seqs 107 out of 1202
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 17:37:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.9 1.5E-22 3.3E-27 134.4 5.9 144 5-152 6-152 (175)
2 KOG1644|consensus 99.5 1.3E-14 2.9E-19 96.8 3.0 136 13-152 14-152 (233)
3 KOG1259|consensus 99.4 2.2E-14 4.9E-19 101.5 0.9 122 15-140 304-426 (490)
4 KOG4194|consensus 99.4 7.4E-13 1.6E-17 100.8 5.3 130 10-147 94-228 (873)
5 KOG0617|consensus 99.4 2.6E-14 5.6E-19 93.9 -2.6 126 12-145 27-155 (264)
6 KOG2123|consensus 99.3 3E-14 6.6E-19 99.6 -3.2 110 41-152 20-129 (388)
7 PF14580 LRR_9: Leucine-rich r 99.3 6.3E-13 1.4E-17 88.5 2.9 113 5-117 28-147 (175)
8 KOG4194|consensus 99.2 2E-12 4.4E-17 98.4 0.3 63 38-101 267-333 (873)
9 KOG0444|consensus 99.2 6.8E-13 1.5E-17 102.1 -3.1 126 1-126 204-332 (1255)
10 KOG0617|consensus 99.2 7.1E-13 1.5E-17 87.2 -2.7 109 14-125 52-165 (264)
11 PLN00113 leucine-rich repeat r 99.2 1.1E-10 2.3E-15 96.1 8.3 83 14-97 89-176 (968)
12 KOG0444|consensus 99.2 5.2E-12 1.1E-16 97.3 0.2 116 5-123 64-186 (1255)
13 PLN00113 leucine-rich repeat r 99.1 2.2E-10 4.7E-15 94.3 8.9 121 18-146 140-266 (968)
14 KOG1259|consensus 99.1 6.3E-12 1.4E-16 89.3 -0.6 123 14-145 280-404 (490)
15 KOG0472|consensus 99.1 1.7E-11 3.8E-16 89.8 1.2 111 14-127 431-544 (565)
16 KOG0472|consensus 99.1 1.2E-11 2.6E-16 90.6 -1.5 115 5-123 192-310 (565)
17 KOG1859|consensus 99.0 2E-12 4.3E-17 100.6 -6.3 113 14-126 183-295 (1096)
18 KOG0618|consensus 99.0 4.7E-11 1E-15 94.8 0.7 110 11-122 376-488 (1081)
19 PF13855 LRR_8: Leucine rich r 98.9 2.4E-09 5.2E-14 59.2 4.5 59 63-122 1-61 (61)
20 KOG0618|consensus 98.9 5.3E-11 1.1E-15 94.5 -3.4 122 16-147 357-483 (1081)
21 KOG0532|consensus 98.8 2.1E-10 4.5E-15 87.3 -2.2 109 13-126 116-227 (722)
22 PF13855 LRR_8: Leucine rich r 98.8 6.5E-09 1.4E-13 57.5 4.3 55 19-74 2-60 (61)
23 PRK15387 E3 ubiquitin-protein 98.8 1.2E-08 2.5E-13 81.8 5.3 103 18-127 342-462 (788)
24 KOG0531|consensus 98.8 5.8E-09 1.3E-13 78.7 3.3 112 14-127 91-203 (414)
25 PRK15387 E3 ubiquitin-protein 98.7 2.4E-08 5.3E-13 80.0 6.6 94 19-124 323-416 (788)
26 KOG1644|consensus 98.7 2.5E-08 5.4E-13 67.2 5.1 102 18-119 42-149 (233)
27 cd00116 LRR_RI Leucine-rich re 98.7 1.9E-08 4.1E-13 72.9 3.2 105 18-123 137-263 (319)
28 KOG4237|consensus 98.6 1.3E-09 2.9E-14 79.8 -3.0 107 18-126 67-180 (498)
29 PF12799 LRR_4: Leucine Rich r 98.6 7.2E-08 1.6E-12 49.7 3.9 41 18-58 1-42 (44)
30 KOG2739|consensus 98.6 5E-08 1.1E-12 67.9 4.2 109 38-150 41-153 (260)
31 COG4886 Leucine-rich repeat (L 98.6 3E-08 6.5E-13 74.2 2.4 44 13-56 158-202 (394)
32 KOG3207|consensus 98.6 6.5E-09 1.4E-13 77.0 -1.4 130 15-147 219-361 (505)
33 PRK15370 E3 ubiquitin-protein 98.5 4.3E-07 9.3E-12 73.0 8.2 100 18-126 199-299 (754)
34 KOG1859|consensus 98.5 1.5E-09 3.3E-14 84.9 -5.5 104 17-125 163-269 (1096)
35 KOG0531|consensus 98.5 1.1E-08 2.4E-13 77.2 -1.2 97 4-101 103-202 (414)
36 PF12799 LRR_4: Leucine Rich r 98.5 1.5E-07 3.2E-12 48.5 3.2 38 64-101 2-40 (44)
37 KOG3665|consensus 98.5 4.6E-08 1E-12 77.8 1.7 132 17-148 121-258 (699)
38 PLN03210 Resistant to P. syrin 98.5 9E-07 2E-11 74.6 9.2 99 17-120 777-879 (1153)
39 PLN03150 hypothetical protein; 98.5 7E-07 1.5E-11 70.7 7.6 100 20-122 420-527 (623)
40 PRK15370 E3 ubiquitin-protein 98.5 5.5E-07 1.2E-11 72.4 6.9 101 19-126 263-383 (754)
41 PLN03210 Resistant to P. syrin 98.5 1.5E-06 3.2E-11 73.3 9.7 75 19-94 612-690 (1153)
42 cd00116 LRR_RI Leucine-rich re 98.4 4.8E-08 1E-12 70.8 0.3 17 15-31 78-94 (319)
43 COG4886 Leucine-rich repeat (L 98.4 8.1E-08 1.7E-12 71.9 1.1 85 16-101 114-202 (394)
44 KOG3207|consensus 98.3 1E-07 2.3E-12 70.8 0.2 111 16-126 170-317 (505)
45 KOG4237|consensus 98.3 1.6E-07 3.4E-12 69.2 0.1 85 14-99 270-360 (498)
46 KOG0532|consensus 98.2 1.9E-07 4.1E-12 71.6 -0.2 105 19-127 144-251 (722)
47 KOG4579|consensus 98.2 1.8E-08 4E-13 64.1 -5.2 105 19-125 28-138 (177)
48 PLN03150 hypothetical protein; 98.2 4.9E-06 1.1E-10 66.1 6.1 86 41-128 419-508 (623)
49 KOG4658|consensus 98.1 2.2E-06 4.8E-11 70.1 4.0 111 8-121 535-653 (889)
50 KOG3763|consensus 98.1 2.8E-06 6E-11 65.0 3.6 88 63-151 218-312 (585)
51 KOG2982|consensus 98.0 3.9E-07 8.3E-12 65.1 -2.5 91 61-151 197-290 (418)
52 KOG4579|consensus 98.0 4.2E-07 9E-12 58.0 -2.5 108 15-125 50-161 (177)
53 KOG1909|consensus 98.0 2.8E-06 6E-11 61.7 1.2 40 14-53 88-133 (382)
54 KOG4658|consensus 97.5 9.6E-05 2.1E-09 60.8 3.5 124 15-147 520-649 (889)
55 KOG3665|consensus 97.5 0.00023 5E-09 57.2 5.3 123 16-144 146-279 (699)
56 KOG1909|consensus 97.4 5.4E-05 1.2E-09 55.2 0.8 131 14-146 116-276 (382)
57 KOG2739|consensus 97.3 0.00018 3.9E-09 50.5 2.1 82 18-99 43-130 (260)
58 KOG2123|consensus 97.1 1.5E-05 3.3E-10 56.7 -4.6 79 17-96 18-99 (388)
59 PF13306 LRR_5: Leucine rich r 97.1 0.0048 1E-07 38.6 7.3 100 13-119 7-112 (129)
60 KOG2982|consensus 97.0 0.00024 5.2E-09 51.2 0.5 78 17-95 70-156 (418)
61 COG5238 RNA1 Ran GTPase-activa 96.7 0.0016 3.4E-08 46.6 3.0 112 12-123 86-227 (388)
62 PRK15386 type III secretion pr 96.5 0.014 2.9E-07 44.4 7.0 63 12-78 46-110 (426)
63 PF13306 LRR_5: Leucine rich r 95.8 0.05 1.1E-06 33.9 6.2 93 13-112 30-128 (129)
64 PF13504 LRR_7: Leucine rich r 95.8 0.0071 1.5E-07 24.3 1.4 9 43-51 4-12 (17)
65 KOG2120|consensus 95.7 0.00055 1.2E-08 49.4 -3.4 14 38-51 258-271 (419)
66 PF00560 LRR_1: Leucine Rich R 95.5 0.01 2.3E-07 25.4 1.4 15 20-34 2-16 (22)
67 COG5238 RNA1 Ran GTPase-activa 95.1 0.049 1.1E-06 39.3 4.5 109 16-125 28-172 (388)
68 KOG2120|consensus 94.9 0.0022 4.8E-08 46.4 -2.5 103 17-121 209-324 (419)
69 PRK15386 type III secretion pr 93.9 0.14 3E-06 39.1 4.9 62 36-101 48-111 (426)
70 smart00370 LRR Leucine-rich re 93.4 0.08 1.7E-06 23.4 1.9 17 18-34 2-18 (26)
71 smart00369 LRR_TYP Leucine-ric 93.4 0.08 1.7E-06 23.4 1.9 17 18-34 2-18 (26)
72 smart00446 LRRcap occurring C- 93.0 0.11 2.5E-06 23.2 2.0 21 130-150 3-23 (26)
73 smart00365 LRR_SD22 Leucine-ri 91.6 0.2 4.3E-06 22.4 1.9 16 18-33 2-17 (26)
74 KOG0473|consensus 91.2 0.005 1.1E-07 43.2 -5.3 87 35-124 37-125 (326)
75 KOG3864|consensus 90.8 0.077 1.7E-06 36.4 0.2 36 84-120 150-186 (221)
76 KOG3864|consensus 90.3 0.11 2.3E-06 35.7 0.5 77 64-146 102-182 (221)
77 smart00364 LRR_BAC Leucine-ric 90.0 0.24 5.1E-06 22.2 1.3 18 85-102 2-19 (26)
78 PF13516 LRR_6: Leucine Rich r 86.4 0.51 1.1E-05 20.2 1.3 12 41-52 3-14 (24)
79 KOG3763|consensus 85.8 0.49 1.1E-05 37.2 1.7 59 16-76 216-283 (585)
80 KOG1947|consensus 85.4 0.69 1.5E-05 35.4 2.3 126 17-146 187-327 (482)
81 KOG1947|consensus 81.5 0.9 1.9E-05 34.7 1.6 107 38-150 186-305 (482)
82 KOG0473|consensus 78.8 0.071 1.5E-06 37.6 -4.6 84 14-98 38-124 (326)
83 KOG4341|consensus 78.1 3.1 6.7E-05 32.0 3.4 109 16-124 292-415 (483)
84 smart00368 LRR_RI Leucine rich 77.3 2.3 5E-05 19.1 1.7 13 41-53 3-15 (28)
85 KOG4341|consensus 68.3 3.6 7.9E-05 31.6 1.8 126 16-145 318-457 (483)
86 smart00367 LRR_CC Leucine-rich 63.0 5.5 0.00012 17.3 1.2 10 111-120 3-12 (26)
87 TIGR00864 PCC polycystin catio 54.9 6.1 0.00013 37.3 1.1 28 47-75 2-31 (2740)
88 TIGR00864 PCC polycystin catio 43.8 45 0.00098 32.2 4.6 40 69-108 1-42 (2740)
89 KOG4308|consensus 20.7 5.3 0.00011 31.3 -4.3 108 17-124 171-304 (478)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.87 E-value=1.5e-22 Score=134.40 Aligned_cols=144 Identities=33% Similarity=0.492 Sum_probs=69.6
Q ss_pred hhhhhhhccCCCCCCCcEEEccCCccccccCCc-CCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-C-
Q psy1563 5 EREKENLYKFKGPNPNTKLSLSTNLIEKISGLM-SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-I- 81 (152)
Q Consensus 5 ~~~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~-~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~- 81 (152)
.+.++....+.++..+++|++++|.|+.+..+. .+.+|+.|++++|.++.++++..+. +|+.|++++|.++.++. +
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~-~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLP-RLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--TT----T-T--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChh-hhhhcccCCCCCCccccchH
Confidence 456677777888889999999999999988665 5789999999999999999888887 99999999999998853 4
Q ss_pred CCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCcccCC
Q psy1563 82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLPE 152 (152)
Q Consensus 82 ~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 152 (152)
..+++|+.|++++|.|.++.++..+..+++|+.+++.+||++... .||..++..+|+|+.||+.+|++
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~---~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK---NYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST---THHHHHHHH-TT-SEETTEETTS
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh---hHHHHHHHHcChhheeCCEEccH
Confidence 368999999999999999998888899999999999999999764 89999999999999999998874
No 2
>KOG1644|consensus
Probab=99.49 E-value=1.3e-14 Score=96.84 Aligned_cols=136 Identities=28% Similarity=0.454 Sum_probs=114.3
Q ss_pred cCCCCCCCcEEEccCCccccccCCc-CCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CC-CCCcccE
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKISGLM-SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IG-SLKKLKV 89 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~~l~-~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~-~~~~L~~ 89 (152)
.+-+...-+++++++.++..+..+. .......+|+++|.+-.++.+..+. .|.+|.+++|.|+.+.+ +. .+++|+.
T Consensus 14 qy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~~ 92 (233)
T KOG1644|consen 14 QYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLKT 92 (233)
T ss_pred hhhhhccccccccccccccchhhccccccccceecccccchhhcccCCCcc-ccceEEecCCcceeeccchhhhccccce
Confidence 3334445677888888887665332 3467889999999998888887776 99999999999999954 43 5688999
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCcccCC
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLPE 152 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 152 (152)
|.+.+|+|.++.+++.+..++.|+.|.+-+|+++... .||..++..+|+|++||+..|++
T Consensus 93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~---~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK---NYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred EEecCcchhhhhhcchhccCCccceeeecCCchhccc---CceeEEEEecCcceEeehhhhhH
Confidence 9999999999999989999999999999999999765 89999999999999999998863
No 3
>KOG1259|consensus
Probab=99.43 E-value=2.2e-14 Score=101.53 Aligned_cols=122 Identities=31% Similarity=0.483 Sum_probs=90.1
Q ss_pred CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCcc-ccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563 15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLE-PLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC 93 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~-~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~ 93 (152)
.-.|+++.|++++|.+..+..+..+++|+.+|+++|.++.+.+|- ++. +.+++.++.|.+..++++..+.+|..|+++
T Consensus 304 KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG-NIKtL~La~N~iE~LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLG-NIKTLKLAQNKIETLSGLRKLYSLVNLDLS 382 (490)
T ss_pred hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhc-CEeeeehhhhhHhhhhhhHhhhhheecccc
Confidence 335566666666666666655556666666666666666655443 333 666667777766666667788889999999
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCC
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~ 140 (152)
+|+|..+.+...++++|+|+++.+.+||+.+.+ .||.++++.+.
T Consensus 383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v---dYRTKVLa~FG 426 (490)
T KOG1259|consen 383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV---DYRTKVLARFG 426 (490)
T ss_pred ccchhhHHHhcccccccHHHHHhhcCCCccccc---hHHHHHHHHHh
Confidence 999998887778899999999999999999876 78888887664
No 4
>KOG4194|consensus
Probab=99.37 E-value=7.4e-13 Score=100.77 Aligned_cols=130 Identities=24% Similarity=0.264 Sum_probs=95.4
Q ss_pred hhccCCCCCCCcEEEccCCccccccC-CcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCC
Q psy1563 10 NLYKFKGPNPNTKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSL 84 (152)
Q Consensus 10 ~~~~~~~l~~l~~L~l~~n~l~~~~~-l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~ 84 (152)
++..|.++++|+++++.+|.++.+|. .....+++.|++.+|.|+.+. .+..+. .|+.++|+.|.++.++. +..-
T Consensus 94 d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrslDLSrN~is~i~~~sfp~~ 172 (873)
T KOG4194|consen 94 DFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRSLDLSRNLISEIPKPSFPAK 172 (873)
T ss_pred cHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-hhhhhhhhhchhhcccCCCCCCC
Confidence 34556788888888888888888884 344566888888888887764 444454 78888888888887753 5566
Q ss_pred CcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 85 KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 85 ~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
.++++|++++|.|+.+.. ..|.++.+|.++.++.|.++..+.- ++..+++|+.||.
T Consensus 173 ~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r------~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQR------SFKRLPKLESLDL 228 (873)
T ss_pred CCceEEeecccccccccc-ccccccchheeeecccCcccccCHH------Hhhhcchhhhhhc
Confidence 688888888888888753 4677777888888888888765532 3566777777754
No 5
>KOG0617|consensus
Probab=99.36 E-value=2.6e-14 Score=93.86 Aligned_cols=126 Identities=23% Similarity=0.243 Sum_probs=87.0
Q ss_pred ccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCccc
Q psy1563 12 YKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLK 88 (152)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~ 88 (152)
..+-++..++.|-++.|+++.+| .+..+.+|+.+++.+|.+.++| .+..+. .|+.++++.|++..+|. ++.++.|+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~-klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLP-KLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhch-hhhheecchhhhhcCccccCCCchhh
Confidence 33445666777788888888775 7777888888888888888877 555664 78888888888777763 77888888
Q ss_pred EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563 89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL 145 (152)
Q Consensus 89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l 145 (152)
.|++..|.+.+-..+..|..++.|+.++++.|.+.-.|++ ++++.+|+.|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-------vg~lt~lqil 155 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-------VGKLTNLQIL 155 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-------hhhhcceeEE
Confidence 8888887776543333444556666666676666655443 5556665554
No 6
>KOG2123|consensus
Probab=99.34 E-value=3e-14 Score=99.64 Aligned_cols=110 Identities=27% Similarity=0.352 Sum_probs=95.9
Q ss_pred cCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCC
Q psy1563 41 KLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGN 120 (152)
Q Consensus 41 ~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n 120 (152)
+.+.|+.-+|.++.+.-...+. .|+.|.|+.|.|+.+..+..|++|+.|+|+.|.|.++.++..++++++|+.|++..|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3455566677777665555665 899999999999999889999999999999999999999999999999999999999
Q ss_pred CCccccchhHHHHHHHHhCCCcccccCcccCC
Q psy1563 121 PIVENLEESAYRVEIKKRLPRLKKLDGEVLPE 152 (152)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 152 (152)
|-.+..+. .||..+++-+|+|+.||..+|++
T Consensus 99 PCc~~ag~-nYR~~VLR~LPnLkKLDnv~Vte 129 (388)
T KOG2123|consen 99 PCCGEAGQ-NYRRKVLRVLPNLKKLDNVPVTE 129 (388)
T ss_pred Ccccccch-hHHHHHHHHcccchhccCccccH
Confidence 99987654 89999999999999999999874
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.34 E-value=6.3e-13 Score=88.53 Aligned_cols=113 Identities=32% Similarity=0.351 Sum_probs=52.7
Q ss_pred hhhhhhhccCC-CCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC--
Q psy1563 5 EREKENLYKFK-GPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-- 80 (152)
Q Consensus 5 ~~~~~~~~~~~-~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-- 80 (152)
...++.++.+. .+.+++.|++++|.|+.++++..+++|++|++++|+++.++ .+....|+|+.|++++|++.++..
T Consensus 28 ~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~ 107 (175)
T PF14580_consen 28 GNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELE 107 (175)
T ss_dssp --------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCG
T ss_pred ccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhH
Confidence 34566677776 57899999999999999998999999999999999999886 443333599999999999987754
Q ss_pred -CCCCCcccEEEcCCCccCCccc--ccccCCCCCccEEEe
Q psy1563 81 -IGSLKKLKVLYMCHNSVKEWGE--LNKINDCPVLEDLVF 117 (152)
Q Consensus 81 -~~~~~~L~~l~l~~n~i~~~~~--~~~~~~l~~L~~l~l 117 (152)
+..+++|+.|++.+|++++.+. ...+..+|+|+.||-
T Consensus 108 ~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6688999999999999986543 112345788887664
No 8
>KOG4194|consensus
Probab=99.21 E-value=2e-12 Score=98.45 Aligned_cols=63 Identities=30% Similarity=0.360 Sum_probs=28.1
Q ss_pred CCccCcEEEcCCCcccccc--CccccccccceeeccccccCCc--cCCCCCCcccEEEcCCCccCCcc
Q psy1563 38 SLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKT--KGIGSLKKLKVLYMCHNSVKEWG 101 (152)
Q Consensus 38 ~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l--~~~~~~~~L~~l~l~~n~i~~~~ 101 (152)
.+.+++++++..|+++.+. .+..++ .|+.|++++|.|..+ +.|..+++|+.|++++|.|++++
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred eecccceeecccchhhhhhcccccccc-hhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 3444444444444444332 223343 444455555544444 12444445555555555544443
No 9
>KOG0444|consensus
Probab=99.19 E-value=6.8e-13 Score=102.05 Aligned_cols=126 Identities=25% Similarity=0.218 Sum_probs=94.9
Q ss_pred CCchhhhhhhh-ccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCc
Q psy1563 1 MEGEEREKENL-YKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT 78 (152)
Q Consensus 1 ~~~~~~~~~~~-~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l 78 (152)
|++-.|.+.++ .++.++.+|..++++.|++..+| .+.++.+|+.|++++|.++++..-...+.+|++|++|.|+++.+
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc
Confidence 45556666664 55778889999999999998888 78889999999999999998874444445899999999999999
Q ss_pred cC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 79 KG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 79 ~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
|. ++.+++|+.|.+.+|+++--..+.-++.+..|+.+...+|.+.-.|
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc
Confidence 86 7888899999888887663233335556666666666666655433
No 10
>KOG0617|consensus
Probab=99.19 E-value=7.1e-13 Score=87.18 Aligned_cols=109 Identities=27% Similarity=0.376 Sum_probs=55.5
Q ss_pred CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCC--ccC-CCCCCccc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEK--TKG-IGSLKKLK 88 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~--l~~-~~~~~~L~ 88 (152)
+..+.+|+.|++.+|+++.+| .+..+++|+.++++.|++..+| +++.+. -|+.+++++|.+.+ +|+ +-.+..|+
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p-~levldltynnl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLR 130 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc-hhhhhhccccccccccCCcchhHHHHHH
Confidence 344555555666666665555 5555566666666655555555 444443 55555555555432 233 33444455
Q ss_pred EEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
.|++++|.+.-+|. ..+.+++|+.++++.|.+...
T Consensus 131 alyl~dndfe~lp~--dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 131 ALYLGDNDFEILPP--DVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred HHHhcCCCcccCCh--hhhhhcceeEEeeccCchhhC
Confidence 55555555444432 334445555555555544433
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.17 E-value=1.1e-10 Score=96.13 Aligned_cols=83 Identities=27% Similarity=0.264 Sum_probs=42.1
Q ss_pred CCCCCCCcEEEccCCccc-ccc-C-CcCCccCcEEEcCCCccccccCccccccccceeeccccccCC-ccC-CCCCCccc
Q psy1563 14 FKGPNPNTKLSLSTNLIE-KIS-G-LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TKG-IGSLKKLK 88 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~-~~~-~-l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~-l~~-~~~~~~L~ 88 (152)
+..++.|+.|++++|+++ .+| . +..+++|+.|++++|.++.......+. +|+.|++++|.++. ++. ++.+++|+
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP-NLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccC-CCCEEECcCCcccccCChHHhcCCCCC
Confidence 456677777777777775 344 2 335666666666666654221112222 44455554444432 121 34444444
Q ss_pred EEEcCCCcc
Q psy1563 89 VLYMCHNSV 97 (152)
Q Consensus 89 ~l~l~~n~i 97 (152)
+|++++|.+
T Consensus 168 ~L~L~~n~l 176 (968)
T PLN00113 168 VLDLGGNVL 176 (968)
T ss_pred EEECccCcc
Confidence 444444443
No 12
>KOG0444|consensus
Probab=99.16 E-value=5.2e-12 Score=97.31 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=88.6
Q ss_pred hhhhhhh-ccCCCCCCCcEEEccCCccc--ccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCcc
Q psy1563 5 EREKENL-YKFKGPNPNTKLSLSTNLIE--KIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTK 79 (152)
Q Consensus 5 ~~~~~~~-~~~~~l~~l~~L~l~~n~l~--~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~ 79 (152)
|+.++.+ .-++.++.|+.++++.|++. .+| .+..+.-|+++|+++|.+.++| .+.... .+..|++|+|+|..+|
T Consensus 64 HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AK-n~iVLNLS~N~IetIP 142 (1255)
T KOG0444|consen 64 HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAK-NSIVLNLSYNNIETIP 142 (1255)
T ss_pred hhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhc-CcEEEEcccCccccCC
Confidence 4445543 34677888888888888885 566 7778888888888888888888 554444 7778888888888887
Q ss_pred C--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563 80 G--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123 (152)
Q Consensus 80 ~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~ 123 (152)
. +-++..|-.|++++|.+..+|. +...+..|++|.+++||+.
T Consensus 143 n~lfinLtDLLfLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 143 NSLFINLTDLLFLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred chHHHhhHhHhhhccccchhhhcCH--HHHHHhhhhhhhcCCChhh
Confidence 5 5577888888888888888775 6677888888888888875
No 13
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.14 E-value=2.2e-10 Score=94.32 Aligned_cols=121 Identities=26% Similarity=0.308 Sum_probs=57.0
Q ss_pred CCCcEEEccCCccc-ccc-CCcCCccCcEEEcCCCccc-ccc-CccccccccceeeccccccCCc-cC-CCCCCcccEEE
Q psy1563 18 NPNTKLSLSTNLIE-KIS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIEKT-KG-IGSLKKLKVLY 91 (152)
Q Consensus 18 ~~l~~L~l~~n~l~-~~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~L~~l~ 91 (152)
++|+.|++++|.++ .+| .+..+++|++|++++|.+. .+| .+..+. +|+.|++++|.++.. |. ++.+++|+.|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 34444444444443 222 3444455555555555443 223 233343 555555555554432 22 44555555555
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+++|.++... ...+..+++|++|++.+|.+.+..+.. +..+++|+.|+
T Consensus 219 L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~------l~~l~~L~~L~ 266 (968)
T PLN00113 219 LGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPSS------LGNLKNLQYLF 266 (968)
T ss_pred CcCCccCCcC-ChhHhcCCCCCEEECcCceeccccChh------HhCCCCCCEEE
Confidence 5555554321 123445556666666666555443321 45556665553
No 14
>KOG1259|consensus
Probab=99.13 E-value=6.3e-12 Score=89.29 Aligned_cols=123 Identities=31% Similarity=0.312 Sum_probs=101.0
Q ss_pred CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCC-CCCCcccEEE
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI-GSLKKLKVLY 91 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~-~~~~~L~~l~ 91 (152)
+.....|+++++++|.|+.++ .++-.|.++.+++++|.+..+..+..+. +|+.+++++|.++.+.+| ..+-+.++|+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcc-cceEeecccchhHhhhhhHhhhcCEeeee
Confidence 445678999999999999997 7888899999999999999988888887 999999999999988774 4677899999
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL 145 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l 145 (152)
++.|.|.+++ -+..+-+|..+++.+|.+..... ..-++++|-|+++
T Consensus 359 La~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~lde-----V~~IG~LPCLE~l 404 (490)
T KOG1259|consen 359 LAQNKIETLS---GLRKLYSLVNLDLSSNQIEELDE-----VNHIGNLPCLETL 404 (490)
T ss_pred hhhhhHhhhh---hhHhhhhheeccccccchhhHHH-----hcccccccHHHHH
Confidence 9999998776 45678889999999999875322 1125667766544
No 15
>KOG0472|consensus
Probab=99.11 E-value=1.7e-11 Score=89.81 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=94.2
Q ss_pred CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
++.++++..|++++|-+..+| .+..+-.|++++++.|++-.+|........++.+-.++|++..++. ++.+.+|++|
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 456889999999999999998 7777888999999999998888544433377888778899988853 8899999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
++.+|.+..+|. .++++++++++.+.|||+. .|+
T Consensus 511 DL~nNdlq~IPp--~LgnmtnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 511 DLQNNDLQQIPP--ILGNMTNLRHLELDGNPFR-QPR 544 (565)
T ss_pred ccCCCchhhCCh--hhccccceeEEEecCCccC-CCH
Confidence 999999999885 6889999999999999998 554
No 16
>KOG0472|consensus
Probab=99.06 E-value=1.2e-11 Score=90.61 Aligned_cols=115 Identities=23% Similarity=0.232 Sum_probs=89.9
Q ss_pred hhhhhhh-ccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-Ccc-ccccccceeeccccccCCccC-
Q psy1563 5 EREKENL-YKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GLE-PLGDCLEELWISYNFIEKTKG- 80 (152)
Q Consensus 5 ~~~~~~~-~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~~-~~~~~L~~l~l~~n~~~~l~~- 80 (152)
++.++.+ ..+..+..|.-||++.|++..+|.|..|..|..+.++.|.++-+| ... .+. ++..+++.+|++++.|.
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~-~l~vLDLRdNklke~Pde 270 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLN-SLLVLDLRDNKLKEVPDE 270 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccc-cceeeeccccccccCchH
Confidence 3444443 345667777778888888888887888888888888888887776 333 444 88999999999998876
Q ss_pred CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123 (152)
Q Consensus 81 ~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~ 123 (152)
++-+.+|..+++++|.|+.+|. .++++ +|+.+.+.|||+.
T Consensus 271 ~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchH
Confidence 6778889999999999998874 67788 7899999999987
No 17
>KOG1859|consensus
Probab=99.05 E-value=2e-12 Score=100.57 Aligned_cols=113 Identities=28% Similarity=0.296 Sum_probs=101.4
Q ss_pred CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC 93 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~ 93 (152)
+.-++.++.|+++.|++.++..+..+++|++||++.|.+..+|.+.....+|+.|.+.+|-++.+-++.++.+|+.|+++
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence 44477899999999999999888899999999999999999997776555899999999999999888999999999999
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
.|-+.+..++..++.+..|..|++.|||+.-.+
T Consensus 263 yNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 263 YNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred HhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999999888878888999999999999998655
No 18
>KOG0618|consensus
Probab=99.03 E-value=4.7e-11 Score=94.80 Aligned_cols=110 Identities=25% Similarity=0.242 Sum_probs=84.5
Q ss_pred hccCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccCCCCCCcc
Q psy1563 11 LYKFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87 (152)
Q Consensus 11 ~~~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L 87 (152)
+..+.++++|+.|+++||++..+| .+.++..|+.|++++|+++.+| .+..+. .|++|....|++..+|.+..++.|
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~-~L~tL~ahsN~l~~fPe~~~l~qL 454 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG-RLHTLRAHSNQLLSFPELAQLPQL 454 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh-hhHHHhhcCCceeechhhhhcCcc
Confidence 455677888888888888888777 5778888888888888888887 445555 888888888888888877788888
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCC
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~ 122 (152)
+.++++-|.++..-.. ....++.|++|+++||.-
T Consensus 455 ~~lDlS~N~L~~~~l~-~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLP-EALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred eEEecccchhhhhhhh-hhCCCcccceeeccCCcc
Confidence 8888888888765432 222347888888888863
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=2.4e-09 Score=59.25 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=42.9
Q ss_pred cccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCC
Q psy1563 63 DCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122 (152)
Q Consensus 63 ~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~ 122 (152)
|+|+.+++++|.++.++. +..+++|+++++++|.++.++. ..+..+++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 367777777777777753 6677788888888888777663 3667777888888877764
No 20
>KOG0618|consensus
Probab=98.91 E-value=5.3e-11 Score=94.52 Aligned_cols=122 Identities=27% Similarity=0.321 Sum_probs=99.3
Q ss_pred CCCCCcEEEccCCcccc--ccCCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-CCCCCcccEE
Q psy1563 16 GPNPNTKLSLSTNLIEK--ISGLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVL 90 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~--~~~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l 90 (152)
..+.|+.|++.+|.++. +|.+..+++|+.|.+++|++..+| .+.++. .|+.|++|+|.++.+|. +..+..|++|
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle-~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE-ELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH-HhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 45678899999999974 478889999999999999999888 455665 99999999999999986 7889999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
...+|.+..+|+ +..++.|+.+|++.|.+....-.. ....|+|++||.
T Consensus 436 ~ahsN~l~~fPe---~~~l~qL~~lDlS~N~L~~~~l~~------~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 436 RAHSNQLLSFPE---LAQLPQLKVLDLSCNNLSEVTLPE------ALPSPNLKYLDL 483 (1081)
T ss_pred hhcCCceeechh---hhhcCcceEEecccchhhhhhhhh------hCCCcccceeec
Confidence 999999999984 466888999999999998643210 112257777764
No 21
>KOG0532|consensus
Probab=98.84 E-value=2.1e-10 Score=87.28 Aligned_cols=109 Identities=27% Similarity=0.331 Sum_probs=74.1
Q ss_pred cCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccE
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKV 89 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~ 89 (152)
.+.++..++.++++.|+++.+| .+..++ |+.+.+++|+++.+| .++.. ++|..++.+.|.+..++. ++.+.+|+.
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~-~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLL-PTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccc-hhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 3456677788888888888776 555454 788888888888777 56633 377777888887776654 666667777
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
++++.|++..+|+ .+..++ |..||++.|.+...|
T Consensus 194 l~vrRn~l~~lp~--El~~Lp-Li~lDfScNkis~iP 227 (722)
T KOG0532|consen 194 LNVRRNHLEDLPE--ELCSLP-LIRLDFSCNKISYLP 227 (722)
T ss_pred HHHhhhhhhhCCH--HHhCCc-eeeeecccCceeecc
Confidence 7777776666654 333444 666666666666544
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=6.5e-09 Score=57.51 Aligned_cols=55 Identities=27% Similarity=0.304 Sum_probs=27.8
Q ss_pred CCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--Cccccccccceeeccccc
Q psy1563 19 PNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNF 74 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~ 74 (152)
+|+.|++++|+++.++ .+..+++|+++++++|.++.++ .+..+. +|+.+++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-TESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCcCCc
Confidence 4555666666655554 4455555555555555555443 222332 45555544443
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.76 E-value=1.2e-08 Score=81.84 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=63.4
Q ss_pred CCCcEEEccCCccccccCCc-C-----------------CccCcEEEcCCCccccccCccccccccceeeccccccCCcc
Q psy1563 18 NPNTKLSLSTNLIEKISGLM-S-----------------LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~~l~-~-----------------~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~ 79 (152)
..|+.|++++|+++.+|.+. . ..+|+.|++++|.++.+|... ++|+.|++++|.++.+|
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP 418 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLP 418 (788)
T ss_pred cccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCC
Confidence 36788888888887765221 0 123444555555554444221 25666666666666555
Q ss_pred CCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 80 GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 80 ~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
.+ ..+|+.|++++|+++.+|. .+..++.|..+++++|++++..+
T Consensus 419 ~l--~~~L~~L~Ls~NqLt~LP~--sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 419 ML--PSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred cc--hhhhhhhhhccCcccccCh--HHhhccCCCeEECCCCCCCchHH
Confidence 32 2356667777777776664 45677888899999999887543
No 24
>KOG0531|consensus
Probab=98.76 E-value=5.8e-09 Score=78.72 Aligned_cols=112 Identities=35% Similarity=0.409 Sum_probs=93.5
Q ss_pred CCCCCCCcEEEccCCccccccC-CcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYM 92 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~-l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l 92 (152)
+..+.+++.+++..|.|..+.. +..+++|+++++++|.|+.+.++..+. .|+.|++++|.++.++.+..++.|+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~-~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLT-LLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhcc-chhhheeccCcchhccCCccchhhhcccC
Confidence 6778888999999999998886 888999999999999999888888887 79999999999998888888899999999
Q ss_pred CCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
++|.+....... ...+..++.+++.+|.+.....
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcccc
Confidence 999988766411 3567788888899888876543
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.74 E-value=2.4e-08 Score=80.03 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=51.4
Q ss_pred CCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCccC
Q psy1563 19 PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVK 98 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~ 98 (152)
.|+.|++++|+++.+|.+ ..+|+.|++++|+++.+|... ++|..|++++|.++.+|.. ..+|+.|++++|.++
T Consensus 323 ~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 323 ELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT 395 (788)
T ss_pred cccccccccCcccccccc--ccccceEecCCCccCCCCCCC---cccceehhhccccccCccc--ccccceEEecCCccc
Confidence 344455555555444422 247889999999988776432 2555566666666555432 234555666666555
Q ss_pred CcccccccCCCCCccEEEecCCCCcc
Q psy1563 99 EWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 99 ~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
.+|.. ...|+.|++++|.+..
T Consensus 396 ~LP~l-----~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 396 SLPVL-----PSELKELMVSGNRLTS 416 (788)
T ss_pred CCCCc-----ccCCCEEEccCCcCCC
Confidence 54421 1234445555554443
No 26
>KOG1644|consensus
Probab=98.72 E-value=2.5e-08 Score=67.19 Aligned_cols=102 Identities=25% Similarity=0.316 Sum_probs=85.1
Q ss_pred CCCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC---CCCCCcccEEEcC
Q psy1563 18 NPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG---IGSLKKLKVLYMC 93 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~---~~~~~~L~~l~l~ 93 (152)
.....++++.|.+..++.+..+++|.+|.+++|+|+.+. .+....|.|..|.+.+|.+.++.. +..+++|+.|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 356678999999998888889999999999999999985 777777789999999999987744 6788999999999
Q ss_pred CCccCCccc--ccccCCCCCccEEEecC
Q psy1563 94 HNSVKEWGE--LNKINDCPVLEDLVFCG 119 (152)
Q Consensus 94 ~n~i~~~~~--~~~~~~l~~L~~l~l~~ 119 (152)
+|.++.... ...+..+++++.+|+.+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 999886443 22355689999998865
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.65 E-value=1.9e-08 Score=72.94 Aligned_cols=105 Identities=28% Similarity=0.290 Sum_probs=55.1
Q ss_pred CCCcEEEccCCcccc-----cc-CCcCCccCcEEEcCCCcccc-----cc-CccccccccceeeccccccCCcc------
Q psy1563 18 NPNTKLSLSTNLIEK-----IS-GLMSLKKLRILALGRNMIKT-----FT-GLEPLGDCLEELWISYNFIEKTK------ 79 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~-----~~-~l~~~~~L~~l~l~~n~~~~-----~~-~~~~~~~~L~~l~l~~n~~~~l~------ 79 (152)
++|+.|++++|.++. +. .+..+++|+++++++|.++. ++ .+.... +|+.+++++|.++...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccChHHHHHHHH
Confidence 566666666666652 11 23344566666666666552 11 122222 6677777766654321
Q ss_pred CCCCCCcccEEEcCCCccCCcccccccC----CCCCccEEEecCCCCc
Q psy1563 80 GIGSLKKLKVLYMCHNSVKEWGELNKIN----DCPVLEDLVFCGNPIV 123 (152)
Q Consensus 80 ~~~~~~~L~~l~l~~n~i~~~~~~~~~~----~l~~L~~l~l~~n~~~ 123 (152)
.+..+++|+.|++++|.+++........ ..+.|+.+++.+|.++
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 1345566777777777666422110001 1256667777776665
No 28
>KOG4237|consensus
Probab=98.64 E-value=1.3e-09 Score=79.81 Aligned_cols=107 Identities=24% Similarity=0.326 Sum_probs=87.5
Q ss_pred CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--Ccccccccc-ceeeccccccCCccC--CCCCCcccEE
Q psy1563 18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCL-EELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L-~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
+...++++..|+|+.+| .|+.+++|+.+|+++|.|+++. .+..+. ++ +.+..++|+|+.++. ++.+..++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 45677899999999997 7899999999999999999884 555565 44 445667799999975 8889999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
.+.-|++..++. +.++.++.+..|++..|.+....
T Consensus 146 llNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~ 180 (498)
T KOG4237|consen 146 LLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSIC 180 (498)
T ss_pred hcChhhhcchhH-HHHHHhhhcchhcccchhhhhhc
Confidence 999999998764 47788999999998888776543
No 29
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.62 E-value=7.2e-08 Score=49.65 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=30.2
Q ss_pred CCCcEEEccCCccccccC-CcCCccCcEEEcCCCccccccCc
Q psy1563 18 NPNTKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFTGL 58 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~~-l~~~~~L~~l~l~~n~~~~~~~~ 58 (152)
++|++|++++|+|+.++. +..+++|+++++++|+++.++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 467888888888888875 88888888888888888766543
No 30
>KOG2739|consensus
Probab=98.61 E-value=5e-08 Score=67.90 Aligned_cols=109 Identities=25% Similarity=0.301 Sum_probs=86.9
Q ss_pred CCccCcEEEcCCCccccccCccccccccceeecccc--ccC-CccC-CCCCCcccEEEcCCCccCCcccccccCCCCCcc
Q psy1563 38 SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYN--FIE-KTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLE 113 (152)
Q Consensus 38 ~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n--~~~-~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~ 113 (152)
.+..++.+.+.+..++.+.++..+. .|+.|.++.| .++ +++. +..+++|++++++.|+|+.+..+..++.+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 4456777777787777777777776 9999999999 433 2332 456699999999999999877666777888999
Q ss_pred EEEecCCCCccccchhHHHHHHHHhCCCcccccCccc
Q psy1563 114 DLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVL 150 (152)
Q Consensus 114 ~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 150 (152)
.+++..|.+... ..||.+++.-+++|+.||+.-|
T Consensus 120 ~Ldl~n~~~~~l---~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNL---DDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCcccc---ccHHHHHHHHhhhhcccccccc
Confidence 999999988873 2799999999999999988654
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=3e-08 Score=74.24 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=21.5
Q ss_pred cCCCCCCCcEEEccCCccccccCCc-CCccCcEEEcCCCcccccc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKISGLM-SLKKLRILALGRNMIKTFT 56 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~~l~-~~~~L~~l~l~~n~~~~~~ 56 (152)
.+..++.|+.|+++.|+++.++... ..+.+..+++++|.++.+|
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~ 202 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202 (394)
T ss_pred hhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCc
Confidence 3444555555555555555444222 4445555555555555444
No 32
>KOG3207|consensus
Probab=98.56 E-value=6.5e-09 Score=77.00 Aligned_cols=130 Identities=23% Similarity=0.287 Sum_probs=76.2
Q ss_pred CCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc---CccccccccceeeccccccCCc--cCC------
Q psy1563 15 KGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT---GLEPLGDCLEELWISYNFIEKT--KGI------ 81 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~---~~~~~~~~L~~l~l~~n~~~~l--~~~------ 81 (152)
..+|.++.|++.+|....+. ....+..|+.|++++|.+-..+ .+..+. .|..++++.+.++.+ ++.
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~Lnls~tgi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQLNLSSTGIASIAEPDVESLDKT 297 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc-chhhhhccccCcchhcCCCccchhhh
Confidence 45667777777766422221 2334556777777777665444 233343 677777777776655 222
Q ss_pred CCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 82 ~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
-.+++|++|++..|+|.+|+....+..+++|+++.+..|++..... .-+..+++.++++..|++
T Consensus 298 ~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~--~a~~~VIAr~~~l~~LN~ 361 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD--TAKLLVIARISQLVKLND 361 (505)
T ss_pred cccccceeeecccCccccccccchhhccchhhhhhccccccccccc--ceeEEeeeehhhhhhhcc
Confidence 3567777777777777777766666667777777777777754322 112223444555544443
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.54 E-value=4.3e-07 Score=73.03 Aligned_cols=100 Identities=22% Similarity=0.234 Sum_probs=65.4
Q ss_pred CCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCc
Q psy1563 18 NPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNS 96 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~ 96 (152)
+.++.|++++|+++.+| .+ .++|++|++++|.++.+|.- +.+.|+.|++++|.+..+|.. -..+|+.|+++.|.
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~LtsLP~~--l~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~N~ 273 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTSIPAT--LPDTIQEMELSINRITELPER-LPSALQSLDLFHNK 273 (754)
T ss_pred cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccccCChh--hhccccEEECcCCccCcCChh-HhCCCCEEECcCCc
Confidence 46788888888888776 33 24788888888888776631 112677777777777766541 12467777777777
Q ss_pred cCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 97 VKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 97 i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
++.+|. .+. +.|+.|++++|.+...+
T Consensus 274 L~~LP~--~l~--~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 274 ISCLPE--NLP--EELRYLSVYDNSIRTLP 299 (754)
T ss_pred cCcccc--ccC--CCCcEEECCCCccccCc
Confidence 776653 221 35777777777766543
No 34
>KOG1859|consensus
Probab=98.53 E-value=1.5e-09 Score=84.91 Aligned_cols=104 Identities=24% Similarity=0.260 Sum_probs=86.7
Q ss_pred CCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCC--CCCcccEEEcC
Q psy1563 17 PNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG--SLKKLKVLYMC 93 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~--~~~~L~~l~l~ 93 (152)
..+|...+.++|.+..++ .+.-++.++.|++++|+++.+..+..+. +|+.||+++|.+.-+|.+. .+ .|..|+++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLP-KLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcc-cccccccccchhccccccchhhh-hheeeeec
Confidence 346777788999998887 7778899999999999999988888887 9999999999998887642 33 49999999
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
+|.++++..+ .++.+|..||+++|-+.+.
T Consensus 241 nN~l~tL~gi---e~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 241 NNALTTLRGI---ENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred ccHHHhhhhH---HhhhhhhccchhHhhhhcc
Confidence 9999988754 4577788999999988754
No 35
>KOG0531|consensus
Probab=98.51 E-value=1.1e-08 Score=77.24 Aligned_cols=97 Identities=32% Similarity=0.387 Sum_probs=82.6
Q ss_pred hhhhhhhhcc-CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--
Q psy1563 4 EEREKENLYK-FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-- 80 (152)
Q Consensus 4 ~~~~~~~~~~-~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-- 80 (152)
..+.++.+.. +..+++|+.|++++|.|+.+.++..++.|+.|++++|.++.+..+..+. .|+.+++++|.++.++.
T Consensus 103 ~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~-~L~~l~l~~n~i~~ie~~~ 181 (414)
T KOG0531|consen 103 YDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLK-SLKLLDLSYNRIVDIENDE 181 (414)
T ss_pred cccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccch-hhhcccCCcchhhhhhhhh
Confidence 3456677777 7889999999999999999988888888999999999999988877776 89999999999988876
Q ss_pred CCCCCcccEEEcCCCccCCcc
Q psy1563 81 IGSLKKLKVLYMCHNSVKEWG 101 (152)
Q Consensus 81 ~~~~~~L~~l~l~~n~i~~~~ 101 (152)
...+.+++.+.+.+|.+..+.
T Consensus 182 ~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 182 LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred hhhccchHHHhccCCchhccc
Confidence 478888888888888877543
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.50 E-value=1.5e-07 Score=48.47 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=22.1
Q ss_pred ccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcc
Q psy1563 64 CLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWG 101 (152)
Q Consensus 64 ~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~ 101 (152)
+|+.|++++|+++.++. +..+++|+.|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 45666666666666655 566666666666666666554
No 37
>KOG3665|consensus
Probab=98.49 E-value=4.6e-08 Score=77.82 Aligned_cols=132 Identities=23% Similarity=0.182 Sum_probs=95.3
Q ss_pred CCCCcEEEccCCccc--ccc-C-CcCCccCcEEEcCCCcccc--ccCccccccccceeeccccccCCccCCCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIE--KIS-G-LMSLKKLRILALGRNMIKT--FTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~--~~~-~-l~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l 90 (152)
-.+|++|++++...- .++ . -..+|.|+.|.+++-.+.. +..+....|+|..||+|+++++.+.+++.+++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 457888888886653 333 2 2367999999999876642 223333345999999999999999889999999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCc
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGE 148 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 148 (152)
.+++=.+.....+..+..+++|++||++..........-...-+....+|+|+.||+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 9998888876666677789999999999887665431101111223468999999875
No 38
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.49 E-value=9e-07 Score=74.56 Aligned_cols=99 Identities=21% Similarity=0.140 Sum_probs=61.0
Q ss_pred CCCCcEEEccCCcc-cccc-CCcCCccCcEEEcCCC-ccccccCccccccccceeeccccc-cCCccCCCCCCcccEEEc
Q psy1563 17 PNPNTKLSLSTNLI-EKIS-GLMSLKKLRILALGRN-MIKTFTGLEPLGDCLEELWISYNF-IEKTKGIGSLKKLKVLYM 92 (152)
Q Consensus 17 l~~l~~L~l~~n~l-~~~~-~l~~~~~L~~l~l~~n-~~~~~~~~~~~~~~L~~l~l~~n~-~~~l~~~~~~~~L~~l~l 92 (152)
++.|+.|++++|.. ..+| .+..+++|+.|++++| .+..+|....+. +|+.+++++|. +..++.. ..+++.|++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~-sL~~L~Ls~c~~L~~~p~~--~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE-SLESLDLSGCSRLRTFPDI--STNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcc-ccCEEECCCCCcccccccc--ccccCEeEC
Confidence 34677777776643 3456 6677788888888776 455566333444 67777777653 2333322 346677777
Q ss_pred CCCccCCcccccccCCCCCccEEEecCC
Q psy1563 93 CHNSVKEWGELNKINDCPVLEDLVFCGN 120 (152)
Q Consensus 93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n 120 (152)
++|.++.+|. .+..+++|+.+++.+|
T Consensus 854 s~n~i~~iP~--si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 854 SRTGIEEVPW--WIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCCCCccChH--HHhcCCCCCEEECCCC
Confidence 7777776653 4556666777777664
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=7e-07 Score=70.74 Aligned_cols=100 Identities=23% Similarity=0.310 Sum_probs=65.7
Q ss_pred CcEEEccCCcccc-cc-CCcCCccCcEEEcCCCccc-ccc-CccccccccceeeccccccCCc-cC-CCCCCcccEEEcC
Q psy1563 20 NTKLSLSTNLIEK-IS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIEKT-KG-IGSLKKLKVLYMC 93 (152)
Q Consensus 20 l~~L~l~~n~l~~-~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~L~~l~l~ 93 (152)
++.|++++|.++. +| .+..+++|+.|++++|.++ .+| .+..+. +|+.|++++|.++.. |. ++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 5667777777763 44 6667778888888888776 455 455565 788888888877643 43 6777788888888
Q ss_pred CCccCC-cccccccCC-CCCccEEEecCCCC
Q psy1563 94 HNSVKE-WGELNKIND-CPVLEDLVFCGNPI 122 (152)
Q Consensus 94 ~n~i~~-~~~~~~~~~-l~~L~~l~l~~n~~ 122 (152)
+|.++. +|. .+.. ..++..+++.+|+.
T Consensus 499 ~N~l~g~iP~--~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPA--ALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCCh--HHhhccccCceEEecCCcc
Confidence 887763 332 2332 23455666766653
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.45 E-value=5.5e-07 Score=72.41 Aligned_cols=101 Identities=24% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccc-------------------cccccceeeccccccCCc
Q psy1563 19 PNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEP-------------------LGDCLEELWISYNFIEKT 78 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~-------------------~~~~L~~l~l~~n~~~~l 78 (152)
.|+.|++++|+++.+| .+ .++|+.|++++|.++.+|.... ..++|+.|++++|.++.+
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSL 340 (754)
T ss_pred CCCEEECcCCccCcccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccC
Confidence 4555555555555444 22 1356666666665554431100 012344444444444444
Q ss_pred cCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 79 ~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
|.. -.++|+.|++++|.++.+|. .+ .+.|+.|++.+|.+...+
T Consensus 341 P~~-l~~sL~~L~Ls~N~L~~LP~--~l--p~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 341 PAS-LPPELQVLDVSKNQITVLPE--TL--PPTITTLDVSRNALTNLP 383 (754)
T ss_pred Chh-hcCcccEEECCCCCCCcCCh--hh--cCCcCEEECCCCcCCCCC
Confidence 320 11455666666666555442 11 245666677776666544
No 41
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.45 E-value=1.5e-06 Score=73.26 Aligned_cols=75 Identities=29% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCcEEEccCCcccccc-CCcCCccCcEEEcCCCc-cccccCccccccccceeeccccc-cCCccC-CCCCCcccEEEcCC
Q psy1563 19 PNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNM-IKTFTGLEPLGDCLEELWISYNF-IEKTKG-IGSLKKLKVLYMCH 94 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~-~~~l~~-~~~~~~L~~l~l~~ 94 (152)
+|+.|++.++.+..++ .+..+++|+.++++++. +..+|.+..+. +|+.|++++|. +..+|. +..+++|+.|++++
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~-~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT-NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCC-cccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 3334444444433332 33334444444444331 23333333332 44444444332 222222 33444444444444
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.43 E-value=4.8e-08 Score=70.82 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=9.0
Q ss_pred CCCCCCcEEEccCCccc
Q psy1563 15 KGPNPNTKLSLSTNLIE 31 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~ 31 (152)
..+++++.|++++|.+.
T Consensus 78 ~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 78 TKGCGLQELDLSDNALG 94 (319)
T ss_pred HhcCceeEEEccCCCCC
Confidence 33555555555555554
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=8.1e-08 Score=71.95 Aligned_cols=85 Identities=27% Similarity=0.300 Sum_probs=41.8
Q ss_pred CCCCCcEEEccCCccccccC-CcCCc-cCcEEEcCCCcccccc-CccccccccceeeccccccCCccCCC-CCCcccEEE
Q psy1563 16 GPNPNTKLSLSTNLIEKISG-LMSLK-KLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKGIG-SLKKLKVLY 91 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~~-l~~~~-~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~~~-~~~~L~~l~ 91 (152)
.++.++.+++.+|.++.++. ....+ +|+.+++++|.+..++ .+..+. .|+.|+++.|+++.++... ..+.|..++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccc-cccccccCCchhhhhhhhhhhhhhhhhee
Confidence 33445555555555555542 22222 4555555555555543 333343 5555555555555554422 445555555
Q ss_pred cCCCccCCcc
Q psy1563 92 MCHNSVKEWG 101 (152)
Q Consensus 92 l~~n~i~~~~ 101 (152)
+++|.+++++
T Consensus 193 ls~N~i~~l~ 202 (394)
T COG4886 193 LSGNKISDLP 202 (394)
T ss_pred ccCCccccCc
Confidence 5555555544
No 44
>KOG3207|consensus
Probab=98.34 E-value=1e-07 Score=70.77 Aligned_cols=111 Identities=25% Similarity=0.271 Sum_probs=65.1
Q ss_pred CCCCCcEEEccCCccccc-c--CCcCCccCcEEEcCCCcccc---------ccCcc-----------------ccccccc
Q psy1563 16 GPNPNTKLSLSTNLIEKI-S--GLMSLKKLRILALGRNMIKT---------FTGLE-----------------PLGDCLE 66 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~-~--~l~~~~~L~~l~l~~n~~~~---------~~~~~-----------------~~~~~L~ 66 (152)
.+++|+.|+++.|.+... . .-..++++++|.++.|.++. +|.+. ...+.|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 456666666666665422 1 11134556666666666551 11100 1113677
Q ss_pred eeeccccccCCccC---CCCCCcccEEEcCCCccCCcccccc-----cCCCCCccEEEecCCCCcccc
Q psy1563 67 ELWISYNFIEKTKG---IGSLKKLKVLYMCHNSVKEWGELNK-----INDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 67 ~l~l~~n~~~~l~~---~~~~~~L~~l~l~~n~i~~~~~~~~-----~~~l~~L~~l~l~~n~~~~~~ 126 (152)
.|+|++|.+..++. .+.++.|..|+++.+.+.++..++. .-..++|+.|.+..|++....
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 78887777665543 5677888888888877776554322 234677888888888876543
No 45
>KOG4237|consensus
Probab=98.28 E-value=1.6e-07 Score=69.20 Aligned_cols=85 Identities=27% Similarity=0.268 Sum_probs=47.5
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
|..+++|+.+++++|+++.+. .|.....++.|.+..|++..+. .+..+. .|++|+|.+|+|+.+.+ +..+..|
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls-~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS-GLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc-cceeeeecCCeeEEEeccccccccee
Confidence 445566666666666666553 4555566666666666665543 333444 56666666666655522 4555566
Q ss_pred cEEEcCCCccCC
Q psy1563 88 KVLYMCHNSVKE 99 (152)
Q Consensus 88 ~~l~l~~n~i~~ 99 (152)
.++++-.|.+..
T Consensus 349 ~~l~l~~Np~~C 360 (498)
T KOG4237|consen 349 STLNLLSNPFNC 360 (498)
T ss_pred eeeehccCcccC
Confidence 666655555443
No 46
>KOG0532|consensus
Probab=98.24 E-value=1.9e-07 Score=71.59 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=89.8
Q ss_pred CCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEEEcCCC
Q psy1563 19 PNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYMCHN 95 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n 95 (152)
-|+.|.+++|+++.+| .+....+|..+|.+.|.+..+| .+..+. +|+.+.+..|.+..+|. +. .-.|..|+++.|
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~-slr~l~vrRn~l~~lp~El~-~LpLi~lDfScN 221 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT-SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCN 221 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHH-HHHHHHHhhhhhhhCCHHHh-CCceeeeecccC
Confidence 4788999999999887 7778899999999999998887 788887 99999999999887765 54 345788999999
Q ss_pred ccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 96 SVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 96 ~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
+|..+|. .+..+..|+.+-++.||+..-+.
T Consensus 222 kis~iPv--~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 222 KISYLPV--DFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred ceeecch--hhhhhhhheeeeeccCCCCCChH
Confidence 9999884 78899999999999999986553
No 47
>KOG4579|consensus
Probab=98.21 E-value=1.8e-08 Score=64.13 Aligned_cols=105 Identities=20% Similarity=0.101 Sum_probs=55.1
Q ss_pred CCcEEEccCCcccccc----CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEEEc
Q psy1563 19 PNTKLSLSTNLIEKIS----GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYM 92 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~----~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l 92 (152)
.+..++++.+++--++ .+.....|+.+++++|.+..+| .+....|..+.+++++|.++++|. +..++.|+.+++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3444455544443221 2334445566666666666555 343333355666666666666543 556666666666
Q ss_pred CCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
+.|.+...+.. +..+.++..|+..+|.....
T Consensus 108 ~~N~l~~~p~v--i~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 108 RFNPLNAEPRV--IAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccCccccchHH--HHHHHhHHHhcCCCCccccC
Confidence 66666655542 22355555555555554443
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=4.9e-06 Score=66.06 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=70.2
Q ss_pred cCcEEEcCCCccc-ccc-CccccccccceeeccccccCC-ccC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEE
Q psy1563 41 KLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIEK-TKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLV 116 (152)
Q Consensus 41 ~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~~-l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~ 116 (152)
.++.|++++|.++ .+| .+..+. +|+.|+++.|.+++ +|. +..+++|+.|++++|.++... ...+..+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEE
Confidence 3778999999887 345 566676 99999999999874 454 789999999999999998533 23678899999999
Q ss_pred ecCCCCccccch
Q psy1563 117 FCGNPIVENLEE 128 (152)
Q Consensus 117 l~~n~~~~~~~~ 128 (152)
+++|.+.+..|.
T Consensus 497 Ls~N~l~g~iP~ 508 (623)
T PLN03150 497 LNGNSLSGRVPA 508 (623)
T ss_pred CcCCcccccCCh
Confidence 999999987764
No 49
>KOG4658|consensus
Probab=98.15 E-value=2.2e-06 Score=70.10 Aligned_cols=111 Identities=23% Similarity=0.164 Sum_probs=84.5
Q ss_pred hhhhccCCCCCCCcEEEccCCc--ccccc--CCcCCccCcEEEcCCC-cccccc-CccccccccceeeccccccCCccC-
Q psy1563 8 KENLYKFKGPNPNTKLSLSTNL--IEKIS--GLMSLKKLRILALGRN-MIKTFT-GLEPLGDCLEELWISYNFIEKTKG- 80 (152)
Q Consensus 8 ~~~~~~~~~l~~l~~L~l~~n~--l~~~~--~l~~~~~L~~l~l~~n-~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~- 80 (152)
++.+..-..+++++.|-+.+|. +..++ .|..++.|++||+++| .+..+| .++.+. +|++|+++.+.+..+|.
T Consensus 535 ~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 535 IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-HLRYLDLSDTGISHLPSG 613 (889)
T ss_pred hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-hhhcccccCCCccccchH
Confidence 3344444566788899888886 55555 4778999999999976 567888 778888 99999999999999975
Q ss_pred CCCCCcccEEEcCCCcc-CCcccccccCCCCCccEEEecCCC
Q psy1563 81 IGSLKKLKVLYMCHNSV-KEWGELNKINDCPVLEDLVFCGNP 121 (152)
Q Consensus 81 ~~~~~~L~~l~l~~n~i-~~~~~~~~~~~l~~L~~l~l~~n~ 121 (152)
++.+..|.+|++..+.- ...+. -...+++|+++.+....
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~--i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPG--ILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHHhhheeccccccccccccc--hhhhcccccEEEeeccc
Confidence 88999999999987743 33322 23348888888887765
No 50
>KOG3763|consensus
Probab=98.11 E-value=2.8e-06 Score=64.97 Aligned_cols=88 Identities=32% Similarity=0.484 Sum_probs=70.4
Q ss_pred cccceeeccccccCCccC----CCCCCcccEEEcCCC--ccCCcccccccCCCCCccEEEecCCCCccccch-hHHHHHH
Q psy1563 63 DCLEELWISYNFIEKTKG----IGSLKKLKVLYMCHN--SVKEWGELNKINDCPVLEDLVFCGNPIVENLEE-SAYRVEI 135 (152)
Q Consensus 63 ~~L~~l~l~~n~~~~l~~----~~~~~~L~~l~l~~n--~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~ 135 (152)
|.+..+++++|++..++. .+..|+|..|+|++| .+.+..++..++.++ |+.+.+.|||+++.... +.|...+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~-Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLP-LEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCC-HHHeeecCCccccchhhhHHHHHHH
Confidence 578889999999877755 357899999999999 777766665666665 99999999999986644 3455577
Q ss_pred HHhCCCcccccCcccC
Q psy1563 136 KKRLPRLKKLDGEVLP 151 (152)
Q Consensus 136 ~~~l~~L~~l~~~~~~ 151 (152)
...+|+|..||+..|.
T Consensus 297 ~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 297 RELFPKLLRLDGVEVQ 312 (585)
T ss_pred HHhcchheeecCcccC
Confidence 7899999999997663
No 51
>KOG2982|consensus
Probab=98.00 E-value=3.9e-07 Score=65.14 Aligned_cols=91 Identities=20% Similarity=0.410 Sum_probs=69.8
Q ss_pred cccccceeeccccccCCcc---CCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHH
Q psy1563 61 LGDCLEELWISYNFIEKTK---GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKK 137 (152)
Q Consensus 61 ~~~~L~~l~l~~n~~~~l~---~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 137 (152)
..|++..+.+-.|++.... +...++.+.-|+++.|+|.+|...+.+..++.+..+.+.++|+.+......-|.-+++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 3457777777777665442 2456677778899999999999999999999999999999999865543233445578
Q ss_pred hCCCcccccCcccC
Q psy1563 138 RLPRLKKLDGEVLP 151 (152)
Q Consensus 138 ~l~~L~~l~~~~~~ 151 (152)
++++++.|++..|.
T Consensus 277 RL~~v~vLNGskIs 290 (418)
T KOG2982|consen 277 RLTKVQVLNGSKIS 290 (418)
T ss_pred eccceEEecCcccc
Confidence 99999999998764
No 52
>KOG4579|consensus
Probab=97.97 E-value=4.2e-07 Score=58.05 Aligned_cols=108 Identities=23% Similarity=0.245 Sum_probs=80.7
Q ss_pred CCCCCCcEEEccCCcccccc-CC-cCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEE
Q psy1563 15 KGPNPNTKLSLSTNLIEKIS-GL-MSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVL 90 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~-~l-~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l 90 (152)
..-.+|+...+++|.+...| .+ .+++.++++++++|.++++| .+..+. .|+.++++.|.+...+. +..+.++..|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~-aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMP-ALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhH-HhhhcccccCccccchHHHHHHHhHHHh
Confidence 34457777899999999887 43 46778999999999999998 666675 99999999999987765 4458888889
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
+...|.+..++-.......+.+.. ++.+++.+.
T Consensus 129 ds~~na~~eid~dl~~s~~~al~~--lgnepl~~~ 161 (177)
T KOG4579|consen 129 DSPENARAEIDVDLFYSSLPALIK--LGNEPLGDE 161 (177)
T ss_pred cCCCCccccCcHHHhccccHHHHH--hcCCccccc
Confidence 988888887764312233444443 356677653
No 53
>KOG1909|consensus
Probab=97.96 E-value=2.8e-06 Score=61.68 Aligned_cols=40 Identities=30% Similarity=0.193 Sum_probs=27.4
Q ss_pred CCCCCCCcEEEccCCcccc--cc----CCcCCccCcEEEcCCCccc
Q psy1563 14 FKGPNPNTKLSLSTNLIEK--IS----GLMSLKKLRILALGRNMIK 53 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~--~~----~l~~~~~L~~l~l~~n~~~ 53 (152)
+..+++|++++++.|.+.. ++ .+..+..|+.|.+.+|.+.
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 4466788888888887742 22 3556777777777777765
No 54
>KOG4658|consensus
Probab=97.49 E-value=9.6e-05 Score=60.79 Aligned_cols=124 Identities=27% Similarity=0.268 Sum_probs=89.9
Q ss_pred CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCc--ccccc-C-ccccccccceeeccccc-cCCccC-CCCCCccc
Q psy1563 15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNM--IKTFT-G-LEPLGDCLEELWISYNF-IEKTKG-IGSLKKLK 88 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~--~~~~~-~-~~~~~~~L~~l~l~~n~-~~~l~~-~~~~~~L~ 88 (152)
.+....+...+.+|.+..++.-..++.|++|-+..|. +..++ . +..+. .|+.|++++|. +..+|. ++.+.+|+
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3445667777777887766644456688899888886 55555 3 44554 99999999764 567775 78899999
Q ss_pred EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+|++..+.|+.+|. .++.+..|.+|++..+.....++. +...+++|++|..
T Consensus 599 yL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~------i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 599 YLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPG------ILLELQSLRVLRL 649 (889)
T ss_pred cccccCCCccccch--HHHHHHhhheeccccccccccccc------hhhhcccccEEEe
Confidence 99999999998875 677888999999988765444332 2455777777643
No 55
>KOG3665|consensus
Probab=97.48 E-value=0.00023 Score=57.24 Aligned_cols=123 Identities=23% Similarity=0.188 Sum_probs=83.1
Q ss_pred CCCCCcEEEccCCcccccc---CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCC---ccCCCCCCcccE
Q psy1563 16 GPNPNTKLSLSTNLIEKIS---GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK---TKGIGSLKKLKV 89 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~---~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~---l~~~~~~~~L~~ 89 (152)
-+|.|+.|.+.+-.+..-. -..++|+|..||++++.++.+.++..+. +|+.|.+.+=.+.. +..+-.+++|++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lk-nLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLK-NLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccc-cHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 3889999999887775332 3457889999999999998887777776 88877765533322 223668899999
Q ss_pred EEcCCCccCCccc-----ccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563 90 LYMCHNSVKEWGE-----LNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK 144 (152)
Q Consensus 90 l~l~~n~i~~~~~-----~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~ 144 (152)
|+++.......+. .+.-.-+|.|+.+|.+++.+... .-..++..-|+|+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~-----~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE-----ILEELLNSHPNLQQ 279 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH-----HHHHHHHhCccHhh
Confidence 9998775443321 11223488999999998887753 22333444555443
No 56
>KOG1909|consensus
Probab=97.39 E-value=5.4e-05 Score=55.17 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEccCCcccccc---------------CCcCCccCcEEEcCCCcccccc------Cccccccccceeeccc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS---------------GLMSLKKLRILALGRNMIKTFT------GLEPLGDCLEELWISY 72 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~---------------~l~~~~~L~~l~l~~n~~~~~~------~~~~~~~~L~~l~l~~ 72 (152)
++.+..|++|++.+|.+.... -...-+.|+++..+.|++..-+ .+... +.|+.+.++.
T Consensus 116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~-~~leevr~~q 194 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH-PTLEEVRLSQ 194 (382)
T ss_pred HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc-cccceEEEec
Confidence 345778888888887775431 1224466888888888776432 11122 3677777777
Q ss_pred cccCCc------cCCCCCCcccEEEcCCCccCCccc---ccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcc
Q psy1563 73 NFIEKT------KGIGSLKKLKVLYMCHNSVKEWGE---LNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLK 143 (152)
Q Consensus 73 n~~~~l------~~~~~~~~L~~l~l~~n~i~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~ 143 (152)
|.|..- ..+.+++.|+.|++++|-++.-.. -..+..|++|+.+.+++|.+...-.. .+-..+-...|+|+
T Consensus 195 N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~-a~~~al~~~~p~L~ 273 (382)
T KOG1909|consen 195 NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI-AFVDALKESAPSLE 273 (382)
T ss_pred ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH-HHHHHHhccCCCCc
Confidence 765311 115677777777777777664221 12345567777777777777654322 23333344566666
Q ss_pred ccc
Q psy1563 144 KLD 146 (152)
Q Consensus 144 ~l~ 146 (152)
+++
T Consensus 274 vl~ 276 (382)
T KOG1909|consen 274 VLE 276 (382)
T ss_pred eec
Confidence 665
No 57
>KOG2739|consensus
Probab=97.25 E-value=0.00018 Score=50.47 Aligned_cols=82 Identities=24% Similarity=0.214 Sum_probs=46.5
Q ss_pred CCCcEEEccCCccccccCCcCCccCcEEEcCCC--ccc-cccCccccccccceeeccccccCCcc---CCCCCCcccEEE
Q psy1563 18 NPNTKLSLSTNLIEKISGLMSLKKLRILALGRN--MIK-TFTGLEPLGDCLEELWISYNFIEKTK---GIGSLKKLKVLY 91 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n--~~~-~~~~~~~~~~~L~~l~l~~n~~~~l~---~~~~~~~L~~l~ 91 (152)
..++.+.+.+..++.+..+..+++|+.|.++.| +++ .++.+....|+|+.++++.|++..+. ++..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 344444455555555555556667777777777 332 22322222257777777777765443 245556666777
Q ss_pred cCCCccCC
Q psy1563 92 MCHNSVKE 99 (152)
Q Consensus 92 l~~n~i~~ 99 (152)
+.+|..+.
T Consensus 123 l~n~~~~~ 130 (260)
T KOG2739|consen 123 LFNCSVTN 130 (260)
T ss_pred cccCCccc
Confidence 77666554
No 58
>KOG2123|consensus
Probab=97.08 E-value=1.5e-05 Score=56.66 Aligned_cols=79 Identities=25% Similarity=0.304 Sum_probs=45.2
Q ss_pred CCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC---CCCCCcccEEEcC
Q psy1563 17 PNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG---IGSLKKLKVLYMC 93 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~---~~~~~~L~~l~l~ 93 (152)
+.+.+.|+.-++.++.+....+++.|++|.++-|.|+.+..+..+. +|+.++|..|.|..+.. +.++++|+.|++.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCt-rLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCT-RLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHH-HHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 3444555555555555554445566666666666666655555555 66666666666555533 4556666666665
Q ss_pred CCc
Q psy1563 94 HNS 96 (152)
Q Consensus 94 ~n~ 96 (152)
.|.
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 554
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.07 E-value=0.0048 Score=38.64 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=57.4
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~ 86 (152)
.|.++.+++.+.+.. .+..++ .+..+++++.+.+.++ +..++ .+.... .++.+.+.. .+..++. +..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-ccccccccc-ccccccccccccccc
Confidence 467788999999874 576775 6778888999999885 66665 334444 788888865 4444433 667889
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecC
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCG 119 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~ 119 (152)
++.+.+..+ ++.++.. .+..+ .++.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~-~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSS-SFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTT-TTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchh-hhcCC-CceEEEECC
Confidence 999988765 6655543 56666 788888765
No 60
>KOG2982|consensus
Probab=96.96 E-value=0.00024 Score=51.22 Aligned_cols=78 Identities=28% Similarity=0.322 Sum_probs=38.9
Q ss_pred CCCCcEEEccCCcccccc----CCcCCccCcEEEcCCCcccc-ccCcc-ccccccceeeccccccC--Ccc-CCCCCCcc
Q psy1563 17 PNPNTKLSLSTNLIEKIS----GLMSLKKLRILALGRNMIKT-FTGLE-PLGDCLEELWISYNFIE--KTK-GIGSLKKL 87 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~----~l~~~~~L~~l~l~~n~~~~-~~~~~-~~~~~L~~l~l~~n~~~--~l~-~~~~~~~L 87 (152)
++.++++++.+|.|+.+. .+..+|.+++|+++.|.++. +..+. ... +|+.+-+.+..+. ... .+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~-nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK-NLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc-ceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 455666667777766553 34566677777777666542 22221 222 4555555444321 111 13344555
Q ss_pred cEEEcCCC
Q psy1563 88 KVLYMCHN 95 (152)
Q Consensus 88 ~~l~l~~n 95 (152)
+.++++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555555
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.72 E-value=0.0016 Score=46.64 Aligned_cols=112 Identities=21% Similarity=0.113 Sum_probs=67.8
Q ss_pred ccCCCCCCCcEEEccCCccccc--c----CCcCCccCcEEEcCCCcccccc--Ccc------------ccccccceeecc
Q psy1563 12 YKFKGPNPNTKLSLSTNLIEKI--S----GLMSLKKLRILALGRNMIKTFT--GLE------------PLGDCLEELWIS 71 (152)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~l~~~--~----~l~~~~~L~~l~l~~n~~~~~~--~~~------------~~~~~L~~l~l~ 71 (152)
..+..||.++..+++.|.+..- + .+...+.+.+|.+++|.+..+. .++ .-.|.|+.+..+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3456899999999999998632 1 5667788999999999876432 111 112578888888
Q ss_pred ccccCCccC------CCCCCcccEEEcCCCccCCcc--cc--cccCCCCCccEEEecCCCCc
Q psy1563 72 YNFIEKTKG------IGSLKKLKVLYMCHNSVKEWG--EL--NKINDCPVLEDLVFCGNPIV 123 (152)
Q Consensus 72 ~n~~~~l~~------~~~~~~L~~l~l~~n~i~~~~--~~--~~~~~l~~L~~l~l~~n~~~ 123 (152)
.|++...+. +..-..|+.+.+..|.|..-. .+ ..+..+.+|+.|++..|-++
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 887654432 222245566666666554211 01 01223555666666666554
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.53 E-value=0.014 Score=44.36 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=41.3
Q ss_pred ccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCC-ccccccCccccccccceeecccc-ccCCc
Q psy1563 12 YKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRN-MIKTFTGLEPLGDCLEELWISYN-FIEKT 78 (152)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n-~~~~~~~~~~~~~~L~~l~l~~n-~~~~l 78 (152)
..+..+.+++.|+++++.++.+|.+ ..+|+.|.++++ .++.+|... .+.|+.|.++.| .+..+
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc
Confidence 3355578899999999988887732 346888888874 445555322 236777777776 44433
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.85 E-value=0.05 Score=33.93 Aligned_cols=93 Identities=16% Similarity=0.270 Sum_probs=48.9
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~ 86 (152)
.|.+++.++.+.+..+ +..++ .+..+++++.+.+.+ .+..++ .+.... .++.+.+..+ +..++. +..+ .
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~-~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT-NLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T-TECEEEETTT--BEEHTTTTTT--T
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc-cccccccCcc-ccEEchhhhcCC-C
Confidence 4677889999999774 77775 677887899999976 555554 333354 8888988765 555533 5665 8
Q ss_pred ccEEEcCCCccCCcccccccCCCCCc
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVL 112 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L 112 (152)
++.+.+.. .++.++.. .+.++++|
T Consensus 105 l~~i~~~~-~~~~i~~~-~F~~~~~l 128 (129)
T PF13306_consen 105 LKEINIPS-NITKIEEN-AFKNCTKL 128 (129)
T ss_dssp --EEE-TT-B-SS-----GGG-----
T ss_pred ceEEEECC-CccEECCc-cccccccC
Confidence 88888765 45555432 55555544
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.81 E-value=0.0071 Score=24.25 Aligned_cols=9 Identities=44% Similarity=0.542 Sum_probs=3.0
Q ss_pred cEEEcCCCc
Q psy1563 43 RILALGRNM 51 (152)
Q Consensus 43 ~~l~l~~n~ 51 (152)
+.|++++|.
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 65
>KOG2120|consensus
Probab=95.75 E-value=0.00055 Score=49.44 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=6.5
Q ss_pred CCccCcEEEcCCCc
Q psy1563 38 SLKKLRILALGRNM 51 (152)
Q Consensus 38 ~~~~L~~l~l~~n~ 51 (152)
+|+.|+.|++++|.
T Consensus 258 scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 258 SCSRLDELNLSWCF 271 (419)
T ss_pred hhhhHhhcCchHhh
Confidence 34444444444443
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.01 Score=25.38 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=7.7
Q ss_pred CcEEEccCCcccccc
Q psy1563 20 NTKLSLSTNLIEKIS 34 (152)
Q Consensus 20 l~~L~l~~n~l~~~~ 34 (152)
|++|++++|+++.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 455555555555444
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.07 E-value=0.049 Score=39.26 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=60.9
Q ss_pred CCCCCcEEEccCCccccc-----c-CCcCCccCcEEEcCCCcccc----c--------cCccccccccceeeccccccC-
Q psy1563 16 GPNPNTKLSLSTNLIEKI-----S-GLMSLKKLRILALGRNMIKT----F--------TGLEPLGDCLEELWISYNFIE- 76 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~-----~-~l~~~~~L~~l~l~~n~~~~----~--------~~~~~~~~~L~~l~l~~n~~~- 76 (152)
.+..++.+++++|.|... . .+.+-.+|+...++.-.... + +.+..+ |+++..++|+|.+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc-p~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC-CcceeeeccccccCc
Confidence 366788889998888532 2 44555566666666543331 1 223333 37777777777653
Q ss_pred CccC-----CCCCCcccEEEcCCCccCCccc------------ccccCCCCCccEEEecCCCCccc
Q psy1563 77 KTKG-----IGSLKKLKVLYMCHNSVKEWGE------------LNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 77 ~l~~-----~~~~~~L~~l~l~~n~i~~~~~------------~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
.++. +..-+.+.+|.+++|.+..+.- .....+-|.|+.+..+.|.+...
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence 2221 4556677777777776542110 01123355666666666666543
No 68
>KOG2120|consensus
Probab=94.90 E-value=0.0022 Score=46.43 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=47.2
Q ss_pred CCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCc-ccccc---CccccccccceeeccccccCCc-cC--CCC-CCc
Q psy1563 17 PNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNM-IKTFT---GLEPLGDCLEELWISYNFIEKT-KG--IGS-LKK 86 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~-~~~~~---~~~~~~~~L~~l~l~~n~~~~l-~~--~~~-~~~ 86 (152)
|.+|+.|.+.++++... - .+.+-..|..++++++. +++.. -+..+. .|..|+++++..+.- .. +.+ -++
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs-~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS-RLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh-hHhhcCchHhhccchhhhHHHhhhchh
Confidence 45555555555555432 1 34444556666666652 33221 122333 666677776654321 11 111 134
Q ss_pred ccEEEcCCCc--cCCcccccc-cCCCCCccEEEecCCC
Q psy1563 87 LKVLYMCHNS--VKEWGELNK-INDCPVLEDLVFCGNP 121 (152)
Q Consensus 87 L~~l~l~~n~--i~~~~~~~~-~~~l~~L~~l~l~~n~ 121 (152)
++.|+++++. +.+- .+.. .+.++++.+||+++|.
T Consensus 288 l~~LNlsG~rrnl~~s-h~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKS-HLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hhhhhhhhhHhhhhhh-HHHHHHHhCCceeeecccccc
Confidence 5555555441 1111 1111 1346666666666653
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.95 E-value=0.14 Score=39.09 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=45.1
Q ss_pred CcCCccCcEEEcCCCccccccCccccccccceeecccc-ccCCccCCCCCCcccEEEcCCC-ccCCcc
Q psy1563 36 LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYN-FIEKTKGIGSLKKLKVLYMCHN-SVKEWG 101 (152)
Q Consensus 36 l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n-~~~~l~~~~~~~~L~~l~l~~n-~i~~~~ 101 (152)
+..+.++..|++++|.++.+|. +.++|+.|.++++ .++.+|.. -..+|+.|.+++| .+..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc
Confidence 4457889999999999988884 3347999999874 45555541 1358899999888 666554
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.38 E-value=0.08 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=9.8
Q ss_pred CCCcEEEccCCcccccc
Q psy1563 18 NPNTKLSLSTNLIEKIS 34 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~ 34 (152)
++|+.|++++|+++.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45566666666665554
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.38 E-value=0.08 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=9.8
Q ss_pred CCCcEEEccCCcccccc
Q psy1563 18 NPNTKLSLSTNLIEKIS 34 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~ 34 (152)
++|+.|++++|+++.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45566666666665554
No 72
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=93.00 E-value=0.11 Score=23.20 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCcccccCccc
Q psy1563 130 AYRVEIKKRLPRLKKLDGEVL 150 (152)
Q Consensus 130 ~~~~~~~~~l~~L~~l~~~~~ 150 (152)
.||..++..+|+|+.||....
T Consensus 3 ~YR~~Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 3 HYREKVIRLLPQLRKLDXXXX 23 (26)
T ss_pred cHHHHHHHHCCccceeccccc
Confidence 789999999999999997643
No 73
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=91.61 E-value=0.2 Score=22.43 Aligned_cols=16 Identities=44% Similarity=0.470 Sum_probs=8.3
Q ss_pred CCCcEEEccCCccccc
Q psy1563 18 NPNTKLSLSTNLIEKI 33 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~ 33 (152)
.+|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555555444
No 74
>KOG0473|consensus
Probab=91.21 E-value=0.005 Score=43.18 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=60.8
Q ss_pred CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcccccccCCCCCc
Q psy1563 35 GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVL 112 (152)
Q Consensus 35 ~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L 112 (152)
.+......+.||++.|++..+. .+..++ ++..++++.|.+..+|. .+....+..+.+.+|..+-.|. .++..+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~--s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK--SQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc--cccccCCc
Confidence 4556677788888888776665 455555 78888888888776653 5555666666777777766553 55667788
Q ss_pred cEEEecCCCCcc
Q psy1563 113 EDLVFCGNPIVE 124 (152)
Q Consensus 113 ~~l~l~~n~~~~ 124 (152)
+.++.-++++..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 888888887664
No 75
>KOG3864|consensus
Probab=90.84 E-value=0.077 Score=36.41 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=18.4
Q ss_pred CCcccEEEcCCC-ccCCcccccccCCCCCccEEEecCC
Q psy1563 84 LKKLKVLYMCHN-SVKEWGELNKINDCPVLEDLVFCGN 120 (152)
Q Consensus 84 ~~~L~~l~l~~n-~i~~~~~~~~~~~l~~L~~l~l~~n 120 (152)
.++|+.|+++.| .|++.. +..+..+++|+.+.+.+=
T Consensus 150 ~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCc
Confidence 345555665555 455543 334455555555555443
No 76
>KOG3864|consensus
Probab=90.30 E-value=0.11 Score=35.72 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=52.1
Q ss_pred ccceeeccccccCCc--cCCCCCCcccEEEcCCC-ccCCcccccccC-CCCCccEEEecCCCCccccchhHHHHHHHHhC
Q psy1563 64 CLEELWISYNFIEKT--KGIGSLKKLKVLYMCHN-SVKEWGELNKIN-DCPVLEDLVFCGNPIVENLEESAYRVEIKKRL 139 (152)
Q Consensus 64 ~L~~l~l~~n~~~~l--~~~~~~~~L~~l~l~~n-~i~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l 139 (152)
.++.++.++..|... .-+..++.++.+.+.++ ++.++.. ..+. -.++|+.|++++|+-...- .+ .-+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~---GL--~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDG---GL--ACLLKL 175 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechh---HH--HHHHHh
Confidence 578888888877643 44778889999999888 6776652 2333 3789999999999654322 11 125566
Q ss_pred CCccccc
Q psy1563 140 PRLKKLD 146 (152)
Q Consensus 140 ~~L~~l~ 146 (152)
++|+.|.
T Consensus 176 knLr~L~ 182 (221)
T KOG3864|consen 176 KNLRRLH 182 (221)
T ss_pred hhhHHHH
Confidence 6666553
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.00 E-value=0.24 Score=22.18 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=12.4
Q ss_pred CcccEEEcCCCccCCccc
Q psy1563 85 KKLKVLYMCHNSVKEWGE 102 (152)
Q Consensus 85 ~~L~~l~l~~n~i~~~~~ 102 (152)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777765
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.42 E-value=0.51 Score=20.24 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=4.7
Q ss_pred cCcEEEcCCCcc
Q psy1563 41 KLRILALGRNMI 52 (152)
Q Consensus 41 ~L~~l~l~~n~~ 52 (152)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444445544444
No 79
>KOG3763|consensus
Probab=85.83 E-value=0.49 Score=37.21 Aligned_cols=59 Identities=32% Similarity=0.298 Sum_probs=35.5
Q ss_pred CCCCCcEEEccCCccccccCC----cCCccCcEEEcCCC--cccc---ccCccccccccceeeccccccC
Q psy1563 16 GPNPNTKLSLSTNLIEKISGL----MSLKKLRILALGRN--MIKT---FTGLEPLGDCLEELWISYNFIE 76 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~~l----~~~~~L~~l~l~~n--~~~~---~~~~~~~~~~L~~l~l~~n~~~ 76 (152)
+.+.+..+.+++|++..++.+ ...|++.+|++++| .+.. ++.+..+ .|+.+.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l--~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL--PLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC--CHHHeeecCCccc
Confidence 456677777777777665422 25577777777777 3332 2233332 5777777777653
No 80
>KOG1947|consensus
Probab=85.40 E-value=0.69 Score=35.35 Aligned_cols=126 Identities=21% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCCCcEEEccCC-cccc--c-cCCcCCccCcEEEcCCC--cccccc----Cccccccccceeeccccc-cCCc--cC-CC
Q psy1563 17 PNPNTKLSLSTN-LIEK--I-SGLMSLKKLRILALGRN--MIKTFT----GLEPLGDCLEELWISYNF-IEKT--KG-IG 82 (152)
Q Consensus 17 l~~l~~L~l~~n-~l~~--~-~~l~~~~~L~~l~l~~n--~~~~~~----~~~~~~~~L~~l~l~~n~-~~~l--~~-~~ 82 (152)
++.++.+.+... .+.. + +....++.|+.++++++ .+...+ .+....+.++.++++.+. +++. .. ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666544 3332 2 24556788888888873 111111 122222478888888876 4433 22 23
Q ss_pred CCCcccEEEcCCCc-cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 83 SLKKLKVLYMCHNS-VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 83 ~~~~L~~l~l~~n~-i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
.+++|+.+.+.++. +++.........++.|+.++++++..... ..+... ...+++++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d---~~l~~~-~~~c~~l~~l~ 327 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD---SGLEAL-LKNCPNLRELK 327 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH---HHHHHH-HHhCcchhhhh
Confidence 47889998877775 67654333334588899999998866522 133333 45577666543
No 81
>KOG1947|consensus
Probab=81.47 E-value=0.9 Score=34.73 Aligned_cols=107 Identities=28% Similarity=0.305 Sum_probs=66.6
Q ss_pred CCccCcEEEcCCC-cccc--ccCccccccccceeecccc-c-cCCcc-----CCCCCCcccEEEcCCCc-cCCccccccc
Q psy1563 38 SLKKLRILALGRN-MIKT--FTGLEPLGDCLEELWISYN-F-IEKTK-----GIGSLKKLKVLYMCHNS-VKEWGELNKI 106 (152)
Q Consensus 38 ~~~~L~~l~l~~n-~~~~--~~~~~~~~~~L~~l~l~~n-~-~~~l~-----~~~~~~~L~~l~l~~n~-i~~~~~~~~~ 106 (152)
.++.++.+.+..+ .++. +..+....+.|+.++++.+ . ++..+ ....+.+++.++++.+. +++... ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence 3567777777766 3343 2223333348999999873 1 11111 13466889999999886 776543 233
Q ss_pred C-CCCCccEEEecCCC-CccccchhHHHHHHHHhCCCcccccCccc
Q psy1563 107 N-DCPVLEDLVFCGNP-IVENLEESAYRVEIKKRLPRLKKLDGEVL 150 (152)
Q Consensus 107 ~-~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 150 (152)
. .++.|+.+.+.++. +++ .-...+...++.|+.|+...+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~-----~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD-----EGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred HhhCCCcceEccCCCCccch-----hHHHHHHHhcCcccEEeeecC
Confidence 3 38889999977776 443 223445678888998876543
No 82
>KOG0473|consensus
Probab=78.75 E-value=0.071 Score=37.61 Aligned_cols=84 Identities=17% Similarity=0.020 Sum_probs=63.9
Q ss_pred CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEE
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVL 90 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l 90 (152)
+..+...+.|+++.|++-.+. .+..++.+..++++.|.+...| +..... .+..+++..|..+..|. .+..+.++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~-e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQR-ETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHH-HHHHHHhhccchhhCCccccccCCcchh
Confidence 345667788899988887776 6777888999999999998888 655555 77777887887777764 6677788877
Q ss_pred EcCCCccC
Q psy1563 91 YMCHNSVK 98 (152)
Q Consensus 91 ~l~~n~i~ 98 (152)
.+-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777654
No 83
>KOG4341|consensus
Probab=78.07 E-value=3.1 Score=31.98 Aligned_cols=109 Identities=17% Similarity=0.072 Sum_probs=49.9
Q ss_pred CCCCCcEEEccCCcc-cccc--C-CcCCccCcEEEcCCCc-ccccc--CccccccccceeeccccccCC---ccC-CCCC
Q psy1563 16 GPNPNTKLSLSTNLI-EKIS--G-LMSLKKLRILALGRNM-IKTFT--GLEPLGDCLEELWISYNFIEK---TKG-IGSL 84 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l-~~~~--~-l~~~~~L~~l~l~~n~-~~~~~--~~~~~~~~L~~l~l~~n~~~~---l~~-~~~~ 84 (152)
++.+++.+..++..- .... . .....+|+++.++.++ ++... .+....++|+.+++..+.... +.. -.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 456667776655332 2211 1 2345677777777764 33221 222223366666665554321 111 2355
Q ss_pred CcccEEEcCCC-ccCCcccc--cc-cCCCCCccEEEecCCCCcc
Q psy1563 85 KKLKVLYMCHN-SVKEWGEL--NK-INDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 85 ~~L~~l~l~~n-~i~~~~~~--~~-~~~l~~L~~l~l~~n~~~~ 124 (152)
+.|+.+.++.+ .|++.... .. -..+..+..+.++.+|+..
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 56666655544 23332110 00 0124445555555555543
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.33 E-value=2.3 Score=19.09 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=7.4
Q ss_pred cCcEEEcCCCccc
Q psy1563 41 KLRILALGRNMIK 53 (152)
Q Consensus 41 ~L~~l~l~~n~~~ 53 (152)
+|+.|++++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 85
>KOG4341|consensus
Probab=68.27 E-value=3.6 Score=31.63 Aligned_cols=126 Identities=19% Similarity=0.089 Sum_probs=71.5
Q ss_pred CCCCCcEEEccCCc-ccccc---CCcCCccCcEEEcCCCcccc---ccCccccccccceeecccccc-CCc-----c-CC
Q psy1563 16 GPNPNTKLSLSTNL-IEKIS---GLMSLKKLRILALGRNMIKT---FTGLEPLGDCLEELWISYNFI-EKT-----K-GI 81 (152)
Q Consensus 16 ~l~~l~~L~l~~n~-l~~~~---~l~~~~~L~~l~l~~n~~~~---~~~~~~~~~~L~~l~l~~n~~-~~l-----~-~~ 81 (152)
++.+|+.+.+...+ ++... .-.+++.|+.+++-.+.... +-.+....+.|+.+.++.+-. ++. . ..
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 56778888777655 33322 22356777777777665432 222223234788888876643 222 1 12
Q ss_pred CCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563 82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL 145 (152)
Q Consensus 82 ~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l 145 (152)
.....+..+-+++++...-..+..+..++.|+.+++-++.-....+ ...+..++|++++.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~----i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA----ISRFATHLPNIKVH 457 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh----hHHHHhhCccceeh
Confidence 4556777788888865543445566677788887776664333222 12235667776644
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.95 E-value=5.5 Score=17.31 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=4.5
Q ss_pred CccEEEecCC
Q psy1563 111 VLEDLVFCGN 120 (152)
Q Consensus 111 ~L~~l~l~~n 120 (152)
.|+.+++.++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444444
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=54.87 E-value=6.1 Score=37.30 Aligned_cols=28 Identities=29% Similarity=0.170 Sum_probs=13.5
Q ss_pred cCCCcccccc--Cccccccccceeecccccc
Q psy1563 47 LGRNMIKTFT--GLEPLGDCLEELWISYNFI 75 (152)
Q Consensus 47 l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~ 75 (152)
|++|+|+.++ .+..+. +|+.|+|+.|.+
T Consensus 2 LSnN~LstLp~g~F~~L~-sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLC-NLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCC-CceEEEeeCCcc
Confidence 4555555554 222332 555555555543
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.81 E-value=45 Score=32.19 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=31.3
Q ss_pred eccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCC
Q psy1563 69 WISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKIND 108 (152)
Q Consensus 69 ~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~ 108 (152)
+|++|.|+.++. +..+++|+.|+|++|.+..-..+.++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~ 42 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPR 42 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHH
Confidence 578899988865 7788899999999999887665555443
No 89
>KOG4308|consensus
Probab=20.75 E-value=5.3 Score=31.34 Aligned_cols=108 Identities=29% Similarity=0.365 Sum_probs=62.5
Q ss_pred CCCCcEEEccCCccccc-----c-CCc----CCccCcEEEcCCCcccccc------CccccccccceeeccccccCCc--
Q psy1563 17 PNPNTKLSLSTNLIEKI-----S-GLM----SLKKLRILALGRNMIKTFT------GLEPLGDCLEELWISYNFIEKT-- 78 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~-----~-~l~----~~~~L~~l~l~~n~~~~~~------~~~~~~~~L~~l~l~~n~~~~l-- 78 (152)
...++.++++.|.+... + .+. ...+++++.+.+|.++... .+......+..+++..|.+.+.
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 56777777777777422 1 232 4667888888888766321 1111221245577777776532
Q ss_pred ----cCCCCC-CcccEEEcCCCccCCccc---ccccCCCCCccEEEecCCCCcc
Q psy1563 79 ----KGIGSL-KKLKVLYMCHNSVKEWGE---LNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 79 ----~~~~~~-~~L~~l~l~~n~i~~~~~---~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
+.+..+ +.++.+++..|+|++... ...+..++.++.+.+..|++..
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 113444 566777888887775321 1134456677788888777764
Done!