Query psy1563
Match_columns 152
No_of_seqs 107 out of 1202
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 17:37:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9n_A U2A', U2A'; complex (nu 99.8 9.4E-19 3.2E-23 116.1 11.2 141 6-150 7-150 (176)
2 1ds9_A Outer arm dynein; leuci 99.7 2.6E-20 8.7E-25 125.8 -3.2 140 13-152 43-186 (198)
3 2je0_A Acidic leucine-rich nuc 99.7 1.9E-17 6.7E-22 106.7 9.9 131 14-148 13-148 (149)
4 2ell_A Acidic leucine-rich nuc 99.7 3.5E-17 1.2E-21 107.6 10.1 132 15-150 21-157 (168)
5 3e6j_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 107.5 13.1 135 13-149 59-199 (229)
6 1xeu_A Internalin C; cellular 99.7 1.7E-16 5.7E-21 111.6 9.6 111 10-125 55-165 (263)
7 3rfs_A Internalin B, repeat mo 99.7 4.7E-16 1.6E-20 109.6 11.8 129 10-146 77-211 (272)
8 3m19_A Variable lymphocyte rec 99.7 7.4E-16 2.5E-20 107.4 12.7 126 13-146 54-185 (251)
9 1h6t_A Internalin B; cell adhe 99.7 2.5E-16 8.7E-21 112.1 10.3 108 14-125 86-193 (291)
10 3rfs_A Internalin B, repeat mo 99.7 4E-16 1.4E-20 110.0 11.1 132 8-147 53-188 (272)
11 1xeu_A Internalin C; cellular 99.7 2.8E-16 9.5E-21 110.5 9.5 128 7-147 30-157 (263)
12 1h6t_A Internalin B; cell adhe 99.7 3.2E-16 1.1E-20 111.6 9.7 128 8-147 58-185 (291)
13 1h6u_A Internalin H; cell adhe 99.7 4.6E-16 1.6E-20 111.6 10.2 106 14-123 81-186 (308)
14 1h6u_A Internalin H; cell adhe 99.7 6.1E-16 2.1E-20 110.9 10.8 109 13-125 102-210 (308)
15 1dce_A Protein (RAB geranylger 99.7 5.1E-16 1.8E-20 119.7 9.8 124 19-146 442-566 (567)
16 4ezg_A Putative uncharacterize 99.7 3.2E-16 1.1E-20 105.6 7.6 127 8-146 56-187 (197)
17 2v9t_B SLIT homolog 2 protein 99.6 2.3E-15 8E-20 103.1 11.9 109 14-124 52-166 (220)
18 1p9a_G Platelet glycoprotein I 99.6 2.9E-15 1E-19 106.6 12.4 111 14-126 51-164 (290)
19 3e6j_A Variable lymphocyte rec 99.6 2.6E-15 8.9E-20 103.4 11.7 122 17-147 39-166 (229)
20 1m9s_A Internalin B; cell inva 99.6 8.4E-16 2.9E-20 119.3 10.0 119 16-146 85-203 (605)
21 1m9s_A Internalin B; cell inva 99.6 1.4E-15 4.9E-20 118.0 10.8 129 7-147 54-182 (605)
22 2o6q_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 103.7 12.8 109 14-124 57-171 (270)
23 1p9a_G Platelet glycoprotein I 99.6 4.2E-15 1.5E-19 105.8 11.7 114 11-126 70-188 (290)
24 2o6s_A Variable lymphocyte rec 99.6 8.1E-15 2.8E-19 99.3 12.3 109 15-125 49-163 (208)
25 2o6q_A Variable lymphocyte rec 99.6 7.8E-15 2.7E-19 103.2 12.5 112 14-127 81-198 (270)
26 4fmz_A Internalin; leucine ric 99.6 2.6E-15 8.9E-20 108.8 9.1 123 14-146 217-339 (347)
27 2v70_A SLIT-2, SLIT homolog 2 99.6 9.2E-15 3.1E-19 100.1 11.3 112 14-127 53-170 (220)
28 4g8a_A TOLL-like receptor 4; l 99.6 4.7E-15 1.6E-19 114.5 10.9 104 19-124 53-162 (635)
29 4g8a_A TOLL-like receptor 4; l 99.6 5.4E-15 1.9E-19 114.1 11.0 121 7-128 63-191 (635)
30 3m19_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 100.9 12.1 123 17-147 34-162 (251)
31 2v70_A SLIT-2, SLIT homolog 2 99.6 2.1E-14 7E-19 98.4 12.6 123 17-147 31-160 (220)
32 2v9t_B SLIT homolog 2 protein 99.6 1.4E-14 4.8E-19 99.2 11.7 122 18-147 32-159 (220)
33 1ozn_A Reticulon 4 receptor; N 99.6 2E-14 6.8E-19 101.7 12.0 125 14-146 101-231 (285)
34 4ezg_A Putative uncharacterize 99.6 5.7E-15 2E-19 99.4 8.4 123 15-147 41-166 (197)
35 2o6s_A Variable lymphocyte rec 99.6 3.9E-14 1.3E-18 95.9 12.6 123 17-147 27-155 (208)
36 1ozn_A Reticulon 4 receptor; N 99.6 2.7E-14 9.1E-19 101.0 11.7 126 14-146 52-207 (285)
37 2wfh_A SLIT homolog 2 protein 99.6 4.5E-14 1.5E-18 94.9 12.3 109 17-127 30-143 (193)
38 4fmz_A Internalin; leucine ric 99.6 1.7E-14 5.8E-19 104.5 10.3 124 14-147 195-318 (347)
39 2z62_A TOLL-like receptor 4, v 99.6 2.7E-14 9.1E-19 100.6 10.9 114 13-127 47-166 (276)
40 2o6r_A Variable lymphocyte rec 99.6 8.6E-14 2.9E-18 92.0 11.7 109 17-127 27-141 (177)
41 3zyi_A Leucine-rich repeat-con 99.6 5.4E-14 1.8E-18 105.5 11.9 41 14-54 119-161 (452)
42 2xot_A Amphoterin-induced prot 99.5 8.4E-14 2.9E-18 101.8 11.9 110 16-127 62-180 (361)
43 1o6v_A Internalin A; bacterial 99.5 4E-14 1.4E-18 106.6 10.3 121 14-146 261-381 (466)
44 4fcg_A Uncharacterized protein 99.5 4.5E-14 1.5E-18 102.1 10.1 123 16-146 181-307 (328)
45 4fcg_A Uncharacterized protein 99.5 1.9E-14 6.6E-19 104.0 8.0 109 14-125 100-221 (328)
46 3zyj_A Leucine-rich repeat-con 99.5 6.6E-14 2.3E-18 104.7 11.1 86 39-126 184-271 (440)
47 2wfh_A SLIT homolog 2 protein 99.5 1.5E-13 5.1E-18 92.3 11.4 117 21-147 13-133 (193)
48 2xot_A Amphoterin-induced prot 99.5 1.1E-13 3.7E-18 101.2 11.5 126 17-147 38-170 (361)
49 1w8a_A SLIT protein; signaling 99.5 2.3E-13 7.9E-18 91.3 12.2 109 18-128 29-144 (192)
50 3zyj_A Leucine-rich repeat-con 99.5 9.4E-14 3.2E-18 103.9 11.3 127 13-146 107-261 (440)
51 2id5_A Lingo-1, leucine rich r 99.5 1.1E-13 3.9E-18 104.2 11.7 126 13-146 51-182 (477)
52 2z66_A Variable lymphocyte rec 99.5 8.6E-14 3E-18 99.3 10.5 109 14-124 122-237 (306)
53 1w8a_A SLIT protein; signaling 99.5 1.2E-13 4E-18 92.7 10.5 117 21-147 11-133 (192)
54 2r9u_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 89.3 12.5 104 20-127 14-122 (174)
55 2z62_A TOLL-like receptor 4, v 99.5 2.3E-13 7.7E-18 95.8 11.8 122 18-147 28-156 (276)
56 1o6v_A Internalin A; bacterial 99.5 6.9E-14 2.3E-18 105.3 9.7 120 15-146 240-359 (466)
57 4b8c_D Glucose-repressible alc 99.5 3.7E-14 1.3E-18 112.2 8.5 114 12-128 218-334 (727)
58 3g39_A Variable lymphocyte rec 99.5 6.4E-13 2.2E-17 87.5 13.1 105 19-127 10-119 (170)
59 2z80_A TOLL-like receptor 2, v 99.5 5.3E-14 1.8E-18 102.3 8.3 109 14-124 72-188 (353)
60 3zyi_A Leucine-rich repeat-con 99.5 1.4E-13 4.9E-18 103.2 10.7 36 14-49 143-180 (452)
61 2xwt_C Thyrotropin receptor; s 99.5 4E-14 1.4E-18 97.8 6.9 108 14-123 51-169 (239)
62 2xwt_C Thyrotropin receptor; s 99.5 7.2E-14 2.5E-18 96.5 7.8 124 14-146 76-211 (239)
63 2z63_A TOLL-like receptor 4, v 99.5 1.9E-13 6.7E-18 104.6 10.9 112 14-126 48-165 (570)
64 3o6n_A APL1; leucine-rich repe 99.5 2.7E-13 9.2E-18 99.8 11.1 110 14-125 65-180 (390)
65 3o53_A Protein LRIM1, AGAP0063 99.5 6.2E-14 2.1E-18 100.7 7.4 107 14-123 140-250 (317)
66 3vq2_A TLR4, TOLL-like recepto 99.5 1.8E-13 6.3E-18 105.7 10.5 112 14-126 52-169 (606)
67 2z80_A TOLL-like receptor 2, v 99.5 1.6E-13 5.6E-18 99.7 9.6 124 17-147 51-181 (353)
68 2ell_A Acidic leucine-rich nuc 99.5 4.2E-14 1.4E-18 92.7 5.9 113 14-127 45-164 (168)
69 2z66_A Variable lymphocyte rec 99.5 2.6E-13 8.8E-18 96.8 10.4 126 14-147 97-230 (306)
70 3v47_A TOLL-like receptor 5B a 99.5 4.4E-13 1.5E-17 100.2 11.6 113 13-127 294-412 (455)
71 3t6q_A CD180 antigen; protein- 99.5 5.4E-13 1.9E-17 103.1 12.1 123 13-143 52-180 (606)
72 3bz5_A Internalin-J, INLJ; leu 99.5 3.4E-13 1.2E-17 101.5 10.6 80 17-99 41-120 (457)
73 3oja_B Anopheles plasmodium-re 99.5 3.7E-13 1.3E-17 104.2 11.0 122 14-146 71-198 (597)
74 3vq2_A TLR4, TOLL-like recepto 99.5 6.5E-13 2.2E-17 102.6 12.3 123 17-147 31-160 (606)
75 3bz5_A Internalin-J, INLJ; leu 99.5 2.1E-13 7.3E-18 102.6 9.2 125 7-147 53-177 (457)
76 1ziw_A TOLL-like receptor 3; i 99.5 8.4E-13 2.9E-17 103.3 12.6 126 13-146 475-615 (680)
77 1a9n_A U2A', U2A'; complex (nu 99.5 4.5E-14 1.5E-18 93.4 4.6 116 8-124 31-154 (176)
78 3o53_A Protein LRIM1, AGAP0063 99.5 1.7E-13 5.7E-18 98.5 7.8 120 17-146 119-243 (317)
79 3v47_A TOLL-like receptor 5B a 99.5 4.5E-13 1.5E-17 100.2 10.4 123 17-147 274-402 (455)
80 3o6n_A APL1; leucine-rich repe 99.5 2.5E-13 8.5E-18 100.0 8.9 124 16-147 43-172 (390)
81 2z63_A TOLL-like receptor 4, v 99.5 8.2E-13 2.8E-17 101.2 12.0 123 17-147 27-156 (570)
82 2id5_A Lingo-1, leucine rich r 99.5 5.8E-13 2E-17 100.3 10.9 123 17-147 31-159 (477)
83 2o6r_A Variable lymphocyte rec 99.5 1.4E-12 4.8E-17 86.1 11.6 118 20-147 9-131 (177)
84 2z81_A CD282 antigen, TOLL-lik 99.5 7.8E-13 2.7E-17 101.0 11.6 118 16-146 385-503 (549)
85 1ogq_A PGIP-2, polygalacturona 99.4 5.9E-13 2E-17 95.6 9.8 126 14-147 121-275 (313)
86 2z81_A CD282 antigen, TOLL-lik 99.4 4.4E-13 1.5E-17 102.4 9.5 103 18-121 26-134 (549)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 9E-13 3.1E-17 101.3 10.4 105 18-124 52-160 (562)
88 3oja_A Leucine-rich immune mol 99.4 2.3E-13 7.8E-18 103.2 7.0 105 16-123 142-250 (487)
89 1wwl_A Monocyte differentiatio 99.4 7.3E-13 2.5E-17 94.9 9.2 129 16-147 93-235 (312)
90 3oja_A Leucine-rich immune mol 99.4 4.2E-13 1.4E-17 101.8 8.1 120 17-146 119-243 (487)
91 3oja_B Anopheles plasmodium-re 99.4 6.4E-13 2.2E-17 102.9 9.2 124 16-147 49-178 (597)
92 2z7x_B TOLL-like receptor 1, v 99.4 7.2E-13 2.5E-17 100.7 8.9 105 18-124 21-129 (520)
93 1ogq_A PGIP-2, polygalacturona 99.4 2.4E-13 8.3E-18 97.6 5.9 84 14-98 97-187 (313)
94 3t6q_A CD180 antigen; protein- 99.4 1.9E-12 6.5E-17 100.0 11.1 123 17-147 32-160 (606)
95 2je0_A Acidic leucine-rich nuc 99.4 2.5E-13 8.6E-18 87.3 5.2 105 13-118 37-148 (149)
96 3j0a_A TOLL-like receptor 5; m 99.4 1.6E-12 5.3E-17 104.3 10.3 111 14-125 44-163 (844)
97 1ziw_A TOLL-like receptor 3; i 99.4 1.3E-12 4.6E-17 102.1 9.6 112 14-127 45-162 (680)
98 1wwl_A Monocyte differentiatio 99.4 1.1E-12 3.7E-17 94.0 8.0 121 13-146 168-302 (312)
99 1xku_A Decorin; proteoglycan, 99.4 2.6E-12 8.7E-17 92.6 10.0 84 40-126 192-279 (330)
100 4glp_A Monocyte differentiatio 99.4 1E-12 3.5E-17 94.1 7.5 71 64-146 225-300 (310)
101 3j0a_A TOLL-like receptor 5; m 99.4 4.5E-12 1.5E-16 101.7 12.0 135 5-147 13-155 (844)
102 4eco_A Uncharacterized protein 99.4 3.2E-12 1.1E-16 99.7 10.3 99 17-117 432-543 (636)
103 2z7x_B TOLL-like receptor 1, v 99.4 3.4E-12 1.2E-16 97.0 10.2 61 64-125 422-483 (520)
104 4eco_A Uncharacterized protein 99.4 1.2E-12 4.2E-17 102.1 7.8 126 14-147 326-464 (636)
105 3rgz_A Protein brassinosteroid 99.4 3.2E-12 1.1E-16 101.6 10.2 127 13-147 413-545 (768)
106 2ft3_A Biglycan; proteoglycan, 99.4 6.1E-12 2.1E-16 90.7 10.8 84 13-98 73-160 (332)
107 1dce_A Protein (RAB geranylger 99.4 8.6E-13 3E-17 101.8 6.7 110 6-116 451-566 (567)
108 1xku_A Decorin; proteoglycan, 99.4 6.4E-12 2.2E-16 90.5 10.6 104 18-123 192-306 (330)
109 1jl5_A Outer protein YOPM; leu 99.4 9.6E-12 3.3E-16 93.6 11.7 80 18-100 131-210 (454)
110 2ft3_A Biglycan; proteoglycan, 99.4 3E-12 1E-16 92.3 8.6 122 18-147 193-327 (332)
111 4ecn_A Leucine-rich repeat pro 99.3 7.3E-12 2.5E-16 100.7 11.0 87 14-101 544-635 (876)
112 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.3E-11 4.4E-16 94.9 11.7 62 64-126 451-513 (562)
113 3cvr_A Invasion plasmid antige 99.3 8.9E-12 3.1E-16 96.1 10.7 97 19-124 141-244 (571)
114 4glp_A Monocyte differentiatio 99.3 2.6E-12 8.8E-17 92.0 6.3 127 17-147 90-231 (310)
115 4b8c_D Glucose-repressible alc 99.3 3E-12 1E-16 101.3 7.2 103 35-147 219-323 (727)
116 1jl5_A Outer protein YOPM; leu 99.3 2.7E-11 9.2E-16 91.1 11.8 109 8-124 143-251 (454)
117 3rgz_A Protein brassinosteroid 99.3 1.2E-11 4.1E-16 98.4 10.2 101 38-147 149-254 (768)
118 4ecn_A Leucine-rich repeat pro 99.3 1.5E-11 5.3E-16 98.9 10.2 99 19-119 674-785 (876)
119 3cvr_A Invasion plasmid antige 99.3 1E-11 3.4E-16 95.8 8.8 110 19-147 121-237 (571)
120 3rw6_A Nuclear RNA export fact 99.3 1.7E-11 5.9E-16 86.1 8.7 113 38-151 139-262 (267)
121 3g06_A SSPH2 (leucine-rich rep 99.2 9.6E-11 3.3E-15 91.3 11.4 58 64-125 242-299 (622)
122 2r9u_A Variable lymphocyte rec 99.2 9.8E-11 3.4E-15 77.3 9.5 84 17-101 32-121 (174)
123 3g39_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 76.7 9.5 84 17-101 29-118 (170)
124 2ifg_A High affinity nerve gro 99.2 2.2E-10 7.5E-15 83.0 12.0 103 22-127 12-120 (347)
125 3g06_A SSPH2 (leucine-rich rep 99.2 1.1E-10 3.7E-15 91.0 9.3 112 17-147 180-291 (622)
126 1ds9_A Outer arm dynein; leuci 99.2 7.3E-14 2.5E-18 94.0 -7.6 119 20-147 25-147 (198)
127 4ay9_X Follicle-stimulating ho 99.1 1.7E-10 5.9E-15 83.8 8.8 127 14-147 100-233 (350)
128 2ifg_A High affinity nerve gro 99.1 1.7E-10 5.9E-15 83.5 8.7 95 7-103 20-121 (347)
129 2ast_B S-phase kinase-associat 99.1 2E-11 6.9E-16 87.9 1.9 14 17-30 92-105 (336)
130 3goz_A Leucine-rich repeat-con 99.1 1.5E-10 5.1E-15 84.5 5.0 85 14-98 46-151 (362)
131 2ca6_A RAN GTPase-activating p 99.0 4.5E-11 1.5E-15 87.8 1.9 127 18-146 159-309 (386)
132 2ast_B S-phase kinase-associat 99.0 2.5E-10 8.7E-15 82.1 5.6 124 18-147 70-202 (336)
133 2ca6_A RAN GTPase-activating p 99.0 3.6E-10 1.2E-14 83.0 5.7 107 16-125 185-318 (386)
134 3goz_A Leucine-rich repeat-con 99.0 3.8E-10 1.3E-14 82.4 5.1 131 15-147 19-174 (362)
135 3sb4_A Hypothetical leucine ri 98.9 8.9E-09 3.1E-13 74.1 10.3 54 64-119 227-283 (329)
136 1z7x_W Ribonuclease inhibitor; 98.9 5.6E-10 1.9E-14 83.4 3.0 130 15-146 25-176 (461)
137 1z7x_W Ribonuclease inhibitor; 98.8 6.4E-10 2.2E-14 83.1 1.6 14 84-97 283-296 (461)
138 4ay9_X Follicle-stimulating ho 98.8 9.9E-09 3.4E-13 74.5 7.8 84 17-101 29-120 (350)
139 3un9_A NLR family member X1; l 98.8 1.8E-09 6.1E-14 79.3 1.6 129 17-147 100-246 (372)
140 3sb4_A Hypothetical leucine ri 98.7 5.3E-08 1.8E-12 70.1 8.9 84 39-126 225-313 (329)
141 3un9_A NLR family member X1; l 98.6 7.1E-09 2.4E-13 76.1 0.6 130 17-148 71-219 (372)
142 1io0_A Tropomodulin; LRR prote 98.4 1E-07 3.5E-12 63.3 2.1 111 13-124 31-165 (185)
143 3ogk_B Coronatine-insensitive 98.4 8.5E-07 2.9E-11 68.2 7.5 38 16-53 162-205 (592)
144 3ogk_B Coronatine-insensitive 98.3 1.3E-06 4.6E-11 67.1 6.1 56 15-71 189-251 (592)
145 2p1m_B Transport inhibitor res 98.2 3.8E-07 1.3E-11 70.1 2.6 101 37-143 429-534 (594)
146 4fdw_A Leucine rich hypothetic 98.2 1.1E-05 3.7E-10 59.8 9.8 35 14-48 176-211 (401)
147 3rw6_A Nuclear RNA export fact 98.2 7.2E-07 2.5E-11 62.6 3.3 93 23-116 148-257 (267)
148 2p1m_B Transport inhibitor res 98.2 7.7E-07 2.6E-11 68.4 3.1 104 16-120 103-221 (594)
149 1io0_A Tropomodulin; LRR prote 98.1 1.5E-06 5.2E-11 57.6 3.3 111 35-148 31-159 (185)
150 3e4g_A ATP synthase subunit S, 98.1 1.8E-06 6.2E-11 56.8 2.8 101 40-144 61-171 (176)
151 3e4g_A ATP synthase subunit S, 98.0 2.1E-06 7.1E-11 56.5 2.2 83 18-100 61-155 (176)
152 2ra8_A Uncharacterized protein 97.9 6.1E-06 2.1E-10 60.4 3.6 129 15-147 169-314 (362)
153 4fdw_A Leucine rich hypothetic 97.8 0.00016 5.3E-09 53.6 9.7 85 35-124 266-359 (401)
154 2ra8_A Uncharacterized protein 97.4 0.00023 7.9E-09 52.0 5.2 126 14-147 135-286 (362)
155 4gt6_A Cell surface protein; l 97.3 0.0029 1E-07 46.3 10.6 103 13-121 260-368 (394)
156 4h09_A Hypothetical leucine ri 97.2 0.0017 5.7E-08 47.3 8.3 53 64-118 287-341 (379)
157 3rfe_A Platelet glycoprotein I 97.2 0.0013 4.3E-08 41.0 6.2 53 44-98 12-68 (130)
158 4h09_A Hypothetical leucine ri 97.1 0.0071 2.4E-07 43.9 10.1 121 15-147 214-340 (379)
159 3rfe_A Platelet glycoprotein I 97.0 0.0017 5.7E-08 40.4 5.7 51 22-75 12-67 (130)
160 4gt6_A Cell surface protein; l 96.7 0.0053 1.8E-07 45.0 7.1 101 13-121 283-389 (394)
161 4fs7_A Uncharacterized protein 96.6 0.012 4E-07 43.1 8.3 36 81-118 339-374 (394)
162 4fs7_A Uncharacterized protein 96.5 0.02 6.8E-07 41.9 8.8 122 13-146 248-372 (394)
163 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0045 1.5E-07 41.3 4.3 107 15-122 38-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0037 1.3E-07 41.8 3.8 109 37-148 38-165 (197)
165 2lz0_A Uncharacterized protein 52.3 19 0.00064 20.7 3.5 35 14-49 16-52 (100)
No 1
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.79 E-value=9.4e-19 Score=116.07 Aligned_cols=141 Identities=22% Similarity=0.312 Sum_probs=120.3
Q ss_pred hhhhhhccCCCCCCCcEEEccCCccccccCCcCCc-cCcEEEcCCCccccccCccccccccceeeccccccCCccC--CC
Q psy1563 6 REKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLK-KLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IG 82 (152)
Q Consensus 6 ~~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~-~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~ 82 (152)
+.+.+...+.++++++.|++++|.++.++.+..+. +|+.+++++|.++.++.+..+. +|+.+++++|.++.++. +.
T Consensus 7 ~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 7 ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp HHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCS-SCCEEECCSSCCCEECSCHHH
T ss_pred HHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCC-CCCEEECCCCcccccCcchhh
Confidence 34455566778999999999999999888666665 9999999999999887777776 99999999999998864 47
Q ss_pred CCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCccc
Q psy1563 83 SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVL 150 (152)
Q Consensus 83 ~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 150 (152)
.+++|+.|++++|.+++++....+..+++|+.+++++|++...+ .++..++..+++|+.||...+
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH---hHHHHHHHHCCccceeCCCcC
Confidence 88999999999999999886556788999999999999998654 566677899999999988654
No 2
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.74 E-value=2.6e-20 Score=125.84 Aligned_cols=140 Identities=49% Similarity=0.807 Sum_probs=121.2
Q ss_pred cCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYM 92 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l 92 (152)
.+..+++|+.|++++|.++.++.+..+++|+.+++++|.++.+|......++|+.+++++|.++.++.+..+++|+.|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence 45678899999999999998888888999999999999999888654443499999999999998877778899999999
Q ss_pred CCCccCCcccccccCCCCCccEEEecCCCCccccch----hHHHHHHHHhCCCcccccCcccCC
Q psy1563 93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE----SAYRVEIKKRLPRLKKLDGEVLPE 152 (152)
Q Consensus 93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~----~~~~~~~~~~l~~L~~l~~~~~~~ 152 (152)
++|.+++++....+..+++|+.+++.+|++.+.++. ..++..++..+++|+.||+.++++
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~ 186 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV 186 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCH
Confidence 999999877545678899999999999999876543 467788899999999999998864
No 3
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=1.9e-17 Score=106.75 Aligned_cols=131 Identities=21% Similarity=0.241 Sum_probs=110.9
Q ss_pred CCCCCCCcEEEccCCccc--ccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCC-ccC-CCCCCccc
Q psy1563 14 FKGPNPNTKLSLSTNLIE--KIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TKG-IGSLKKLK 88 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~--~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~-l~~-~~~~~~L~ 88 (152)
....++++.|++++|.++ .++ .+..+++|+.+++++|.++.++.+..+. +|+.+++++|.++. ++. +..+++|+
T Consensus 13 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp TCCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred cCCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCC
Confidence 345688999999999998 677 6688999999999999998886667776 99999999999987 554 45689999
Q ss_pred EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCc
Q psy1563 89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGE 148 (152)
Q Consensus 89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 148 (152)
.|++++|.+++++....+..+++|+.+++++|++++.+ .++...+..+++|+.||..
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN---DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST---THHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH---HHHHHHHHHCCCcccccCC
Confidence 99999999998764457788999999999999998765 3455568999999999864
No 4
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=3.5e-17 Score=107.57 Aligned_cols=132 Identities=24% Similarity=0.234 Sum_probs=112.1
Q ss_pred CCCCCCcEEEccCCccc--ccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCC-ccC-CCCCCcccE
Q psy1563 15 KGPNPNTKLSLSTNLIE--KIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TKG-IGSLKKLKV 89 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~--~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~-l~~-~~~~~~L~~ 89 (152)
..+++++.|++++|.++ .++ .+..+++|+.|++++|.++.++.+..+. +|+.+++++|.++. ++. +..+++|+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 45688999999999998 777 5688999999999999998886666776 99999999999988 454 456899999
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCccc
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVL 150 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 150 (152)
|++++|.+++++....+..++.|+.+++++|++.+.+ .++...+..+++|+.||....
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN---DYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST---THHHHHHTTCSSCCEETTEET
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH---HHHHHHHHhCccCcEecCCCC
Confidence 9999999999875557888999999999999998765 455556889999999987543
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=4.1e-16 Score=107.45 Aligned_cols=135 Identities=21% Similarity=0.265 Sum_probs=96.8
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC-CCCCCcc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG-IGSLKKL 87 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L 87 (152)
.+.++++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ . +..+. +|+.|++++|.++.+|. +..+++|
T Consensus 59 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L 137 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV-HLKELFMCCNKLTELPRGIERLTHL 137 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCSCCTTGGGCTTC
T ss_pred HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch-hhCeEeccCCcccccCcccccCCCC
Confidence 3667788888888888887775 4577888888888888888776 2 34555 88888888888887754 6777888
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc-hhHHHHHHHHhCCCcccccCcc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE-ESAYRVEIKKRLPRLKKLDGEV 149 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~~~~~l~~L~~l~~~~ 149 (152)
++|++++|.++.++. ..+..+++|+.+++.+|++....+ ...++..+......+..+|+.+
T Consensus 138 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~ 199 (229)
T 3e6j_A 138 THLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKA 199 (229)
T ss_dssp SEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSE
T ss_pred CEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcc
Confidence 888888888887764 356778888888888888876653 2234444444455555555543
No 6
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.7e-16 Score=111.61 Aligned_cols=111 Identities=30% Similarity=0.390 Sum_probs=65.6
Q ss_pred hhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccE
Q psy1563 10 NLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKV 89 (152)
Q Consensus 10 ~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~ 89 (152)
.+..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+.. . +|+.|++++|.++.++.+..+++|+.
T Consensus 55 ~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~-~L~~L~L~~N~l~~~~~l~~l~~L~~ 132 (263)
T 1xeu_A 55 SLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-A-CLSRLFLDNNELRDTDSLIHLKNLEI 132 (263)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-S-SCCEEECCSSCCSBSGGGTTCTTCCE
T ss_pred cchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc-C-cccEEEccCCccCCChhhcCcccccE
Confidence 334445556666666666666655445556666666666666665554433 2 66666666666665555556666666
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
|++++|.+++++ .+..+++|+.+++++|.+.+.
T Consensus 133 L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 133 LSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCcCCCCh---HHccCCCCCEEECCCCcCcch
Confidence 666666666553 344556666666666666554
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=4.7e-16 Score=109.62 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=75.9
Q ss_pred hhccCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCC
Q psy1563 10 NLYKFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGS 83 (152)
Q Consensus 10 ~~~~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~ 83 (152)
.+..+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+. +|+.+++++|.++.++. +..
T Consensus 77 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~ 155 (272)
T 3rfs_A 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDK 155 (272)
T ss_dssp CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTT
T ss_pred CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-CCCEEECCCCccCccCHHHhcc
Confidence 3444555666666666666666554 24556666666666666665542 34444 66666666666665543 456
Q ss_pred CCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 84 LKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 84 ~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+++|+.|++++|.+++++. ..+..+++|+.+++++|.+.+.++.. +..+++|+.|+
T Consensus 156 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~ 211 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDGV------FDRLTSLQYIW 211 (272)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEE
T ss_pred CccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCHHH------HhCCcCCCEEE
Confidence 6666666666666665543 23455666677777777666554421 44556666553
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=7.4e-16 Score=107.36 Aligned_cols=126 Identities=22% Similarity=0.314 Sum_probs=81.9
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~ 86 (152)
.+.++++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCc
Confidence 3556777777777777777654 4666777777777777777665 233444 77777777777776644 456677
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
|+.|++++|.++.++. ..+..+++|+.|++++|.+.+.++.. +..+++|+.|+
T Consensus 133 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~ 185 (251)
T 3m19_A 133 LKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGA------FDRLGKLQTIT 185 (251)
T ss_dssp CCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEE
T ss_pred ccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHHH------HhCCCCCCEEE
Confidence 7777777777776653 24556677777777777776655422 45556666553
No 9
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=2.5e-16 Score=112.13 Aligned_cols=108 Identities=28% Similarity=0.332 Sum_probs=51.4
Q ss_pred CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC 93 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~ 93 (152)
+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|+++
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP-QLESLYLGNNKITDITVLSRLTKLDTLSLE 164 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCC-CCCEEEccCCcCCcchhhccCCCCCEEEcc
Confidence 3344444444444444444433444444444444444444444333333 455555555555444444445555555555
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
+|.+++.+. +..+++|+.+++++|.+.+.
T Consensus 165 ~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 165 DNQISDIVP---LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp SSCCCCCGG---GTTCTTCCEEECCSSCCCBC
T ss_pred CCccccchh---hcCCCccCEEECCCCcCCCC
Confidence 555554432 34455555555555555543
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=4e-16 Score=109.97 Aligned_cols=132 Identities=22% Similarity=0.257 Sum_probs=108.7
Q ss_pred hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCC
Q psy1563 8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGS 83 (152)
Q Consensus 8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~ 83 (152)
++.+..+..+++|+.|++++|.++.++.+..+++|++|++++|.++.++. +..+. +|+.|++++|.++.++. +..
T Consensus 53 i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLT-NLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp CCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTT
T ss_pred cccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCc-CCCEEECCCCcCCccCHHHhcc
Confidence 44556677889999999999999888878889999999999999988763 45665 99999999999988865 678
Q ss_pred CCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 84 LKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 84 ~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+++|++|++++|.+++++. ..+..+++|+.+++++|.+.+.++.. +..+++|+.|+.
T Consensus 132 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~L 188 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGV------FDKLTQLKDLRL 188 (272)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT------TTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHHH------hcCCccCCEEEC
Confidence 8999999999999998764 35678899999999999998776532 567788887754
No 11
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=2.8e-16 Score=110.46 Aligned_cols=128 Identities=23% Similarity=0.260 Sum_probs=110.5
Q ss_pred hhhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCc
Q psy1563 7 EKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKK 86 (152)
Q Consensus 7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~ 86 (152)
.++++..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+.. ++
T Consensus 30 ~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~L~~N~l~~l~~~~~-~~ 107 (263)
T 1xeu_A 30 SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLT-KLEELSVNRNRLKNLNGIPS-AC 107 (263)
T ss_dssp CTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCSCCTTCCC-SS
T ss_pred CcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCC-CCCEEECCCCccCCcCcccc-Cc
Confidence 34555566788999999999999999888889999999999999999888777776 99999999999999887666 99
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|+.|++++|.+++++ .+..+++|+.+++++|.+++.+. +..+++|+.|+.
T Consensus 108 L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~--------l~~l~~L~~L~L 157 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM--------LGFLSKLEVLDL 157 (263)
T ss_dssp CCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGG--------GGGCTTCCEEEC
T ss_pred ccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCChH--------HccCCCCCEEEC
Confidence 999999999999875 46789999999999999988643 677888887754
No 12
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=3.2e-16 Score=111.63 Aligned_cols=128 Identities=26% Similarity=0.298 Sum_probs=99.0
Q ss_pred hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcc
Q psy1563 8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87 (152)
Q Consensus 8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L 87 (152)
+..+..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|
T Consensus 58 i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~i~~~~~l~~l~~L 136 (291)
T 1h6t_A 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLK-KLKSLSLEHNGISDINGLVHLPQL 136 (291)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCT-TCCEEECTTSCCCCCGGGGGCTTC
T ss_pred cccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCC-CCCEEECCCCcCCCChhhcCCCCC
Confidence 3445556677888888888888887766777888888888888888777777776 888888888888887777788888
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+.|++++|.+++++ .+..+++|+.|++++|.+.+.++ +..+++|+.|+.
T Consensus 137 ~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~L~L 185 (291)
T 1h6t_A 137 ESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP--------LAGLTKLQNLYL 185 (291)
T ss_dssp CEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG--------GTTCTTCCEEEC
T ss_pred CEEEccCCcCCcch---hhccCCCCCEEEccCCccccchh--------hcCCCccCEEEC
Confidence 88888888888763 56678888889998888887653 456677776643
No 13
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=4.6e-16 Score=111.60 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=49.6
Q ss_pred CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC 93 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~ 93 (152)
+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|+++
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS-NLQVLYLDLNQITNISPLAGLTNLQYLSIG 159 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCC-CCCEEECCCCccCcCccccCCCCccEEEcc
Confidence 4455555555555555555444445555555555555555444433333 444444444444444334444444444444
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIV 123 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~ 123 (152)
+|.+++++. +..+++|+.+++++|.+.
T Consensus 160 ~n~l~~~~~---l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 160 NAQVSDLTP---LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp SSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred CCcCCCChh---hcCCCCCCEEECCCCccC
Confidence 444443331 233344444444444443
No 14
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=6.1e-16 Score=110.93 Aligned_cols=109 Identities=23% Similarity=0.300 Sum_probs=50.6
Q ss_pred cCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYM 92 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l 92 (152)
.+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|++
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNAQVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCC-CccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence 34444445555555554444444444444555555555444444333333 44555555544444433444444555555
Q ss_pred CCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
++|.+++++. +..+++|+.+++++|.+.+.
T Consensus 181 ~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 181 DDNKISDISP---LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp CSSCCCCCGG---GGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCcChh---hcCCCCCCEEEccCCccCcc
Confidence 5544444332 33344444555555544443
No 15
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=5.1e-16 Score=119.69 Aligned_cols=124 Identities=24% Similarity=0.400 Sum_probs=108.3
Q ss_pred CCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccCCCCCCcccEEEcCCCcc
Q psy1563 19 PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSV 97 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i 97 (152)
.|+.|++++|.++.+|.+..+++|+.|++++|.++.+| .+..+. +|+.|++++|.++.+|.+..+++|+.|++++|.+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR-CLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCC-CCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence 58999999999999988889999999999999999888 666776 9999999999999998888999999999999999
Q ss_pred CCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 98 KEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 98 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+++..+..+..+++|+.|++++|++++.++. ...+...+|+|+.||
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI---QERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSSC---TTHHHHHCTTCSEEE
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCccH---HHHHHHHCcccCccC
Confidence 9884233678899999999999999987642 333567799999885
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.2e-16 Score=105.58 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=90.8
Q ss_pred hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccc--ccCccccccccceeeccccccCCc--cCCCC
Q psy1563 8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT--FTGLEPLGDCLEELWISYNFIEKT--KGIGS 83 (152)
Q Consensus 8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~~l--~~~~~ 83 (152)
+..+..+..+++|+.|++++|.++.++.+..+++|+++++++|.++. .+.+..+. +|+.|++++|.++.. +.+..
T Consensus 56 i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 56 VTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp CSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT-TCCEEECCSSBCBGGGHHHHTT
T ss_pred ccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCC-CCCEEEecCCccCcHhHHHHhh
Confidence 33444566677888888888877666667777888888888888775 23555665 888888888887752 33667
Q ss_pred CCcccEEEcCCCc-cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 84 LKKLKVLYMCHNS-VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 84 ~~~L~~l~l~~n~-i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+++|+.|++++|. +++++ .+..+++|+.+++++|.+.+.+. +..+++|+.|+
T Consensus 135 l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~--------l~~l~~L~~L~ 187 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG--------IEDFPKLNQLY 187 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT--------GGGCSSCCEEE
T ss_pred CCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH--------hccCCCCCEEE
Confidence 7888888888886 77765 45667788888888888876542 56777777764
No 17
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=2.3e-15 Score=103.10 Aligned_cols=109 Identities=21% Similarity=0.304 Sum_probs=50.1
Q ss_pred CCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+..+++|+.|++++|.++.+ + .+..+++|+.|++++|.++.++. +..+. +|+.|++++|.++.++. +..+++|
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 34444455555555554443 2 34444455555555555444431 22333 45555555555444421 4444455
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
+.|++++|.++.++. ..+..+++|+.+++.+|++..
T Consensus 131 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCC
Confidence 555555555544432 133444445555555555443
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=2.9e-15 Score=106.62 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=60.2
Q ss_pred CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccC-ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTG-LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
+.++++|+.|++++|.++.++....+++|++|++++|.++.+|. +..+. +|+.|++++|.++.++. +..+++|+.|
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred hhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 45556666666666666555433455556666666665555552 23333 55666666665555532 4555566666
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
++++|.++.++. ..+..+++|+.|++++|.+...+
T Consensus 130 ~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 130 YLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp ECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCC
T ss_pred ECCCCCCCccCh-hhcccccCCCEEECCCCcCCccC
Confidence 666665555442 23444555555566555555444
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=2.6e-15 Score=103.43 Aligned_cols=122 Identities=27% Similarity=0.306 Sum_probs=104.0
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.++++.|++++|.++.++ .+..+++|+.|++++|.++.++ . +..+. +|+.|++++|.++.++. +..+++|+.|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 478999999999999874 6889999999999999999887 3 45665 99999999999998865 6789999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++++|.++.++. .+..+++|+.|++++|.+...++.. +..+++|+.|+.
T Consensus 118 ~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~l 166 (229)
T 3e6j_A 118 FMCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHGA------FDRLSSLTHAYL 166 (229)
T ss_dssp ECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTTT------TTTCTTCCEEEC
T ss_pred eccCCcccccCc--ccccCCCCCEEECCCCcCCccCHHH------HhCCCCCCEEEe
Confidence 999999998874 5678999999999999999776532 567788887743
No 20
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=8.4e-16 Score=119.25 Aligned_cols=119 Identities=29% Similarity=0.321 Sum_probs=58.8
Q ss_pred CCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCC
Q psy1563 16 GPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHN 95 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n 95 (152)
.+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|++++|
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP-QLESLYLGNNKITDITVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp GCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCT-TCSEEECCSSCCCCCGGGGSCTTCSEEECCSS
T ss_pred cCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCC-ccCEEECCCCccCCchhhcccCCCCEEECcCC
Confidence 34444444444444444334444444444444444444444444443 55555555555554444445555555555555
Q ss_pred ccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 96 SVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 96 ~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
.+++.+. +..+++|+.|++++|.+.+.+. +..+++|+.|+
T Consensus 164 ~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~--------l~~l~~L~~L~ 203 (605)
T 1m9s_A 164 QISDIVP---LAGLTKLQNLYLSKNHISDLRA--------LAGLKNLDVLE 203 (605)
T ss_dssp CCCCCGG---GTTCTTCCEEECCSSCCCBCGG--------GTTCTTCSEEE
T ss_pred cCCCchh---hccCCCCCEEECcCCCCCCChH--------HccCCCCCEEE
Confidence 5554432 4455556666666666554421 45556666554
No 21
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.4e-15 Score=117.99 Aligned_cols=129 Identities=26% Similarity=0.305 Sum_probs=100.1
Q ss_pred hhhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCc
Q psy1563 7 EKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKK 86 (152)
Q Consensus 7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~ 86 (152)
.+..+..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++
T Consensus 54 ~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~ 132 (605)
T 1m9s_A 54 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLK-KLKSLSLEHNGISDINGLVHLPQ 132 (605)
T ss_dssp CCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCT-TCCEEECTTSCCCCCGGGGGCTT
T ss_pred CCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCC-CCCEEEecCCCCCCCccccCCCc
Confidence 34455567778888888888888887766777888888888888888777777776 88888888888887777778888
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|+.|++++|.+++++ .+..+++|+.|++++|.+.+.++ +..+++|+.|+.
T Consensus 133 L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~--------l~~l~~L~~L~L 182 (605)
T 1m9s_A 133 LESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP--------LAGLTKLQNLYL 182 (605)
T ss_dssp CSEEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGG--------GTTCTTCCEEEC
T ss_pred cCEEECCCCccCCch---hhcccCCCCEEECcCCcCCCchh--------hccCCCCCEEEC
Confidence 888888888888763 55677888888888888877654 566777777754
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=6.2e-15 Score=103.70 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=49.6
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+.++++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCC
Confidence 445555555555555555544 2344555555555555555443 122232 44444444444444422 3344444
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
++|++++|.++.++. ..+..+++|+.+++.+|.+.+
T Consensus 136 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 136 TYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred CEEECCCCcCCccCH-hHccCCcccceeEecCCcCcE
Confidence 444444444444332 123334444444444444433
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=4.2e-15 Score=105.78 Aligned_cols=114 Identities=22% Similarity=0.236 Sum_probs=69.1
Q ss_pred hccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCC
Q psy1563 11 LYKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLK 85 (152)
Q Consensus 11 ~~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~ 85 (152)
+.....+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+. +|+.|++++|.++.++. +..++
T Consensus 70 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp EECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-CCCEEECCCCCCCccChhhccccc
Confidence 333355666777777777776665 4556666777777777666654 244444 66666666666666543 45566
Q ss_pred cccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 86 KLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 86 ~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
+|+.|++++|.++.++. ..+..+++|+.+++++|.+...+
T Consensus 149 ~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp TCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccC
Confidence 66666666666666553 23445666666666666665443
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=8.1e-15 Score=99.31 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=52.4
Q ss_pred CCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCccc
Q psy1563 15 KGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLK 88 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~ 88 (152)
.++++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+. +|+.+++++|.++.++. +..+++|+
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 34455555555555554443 23445555555555555544431 23333 55555555555554432 34455555
Q ss_pred EEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
.|++++|.+++++. ..+..+++|+.+++.+|++.+.
T Consensus 128 ~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 128 DLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp EEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCC
T ss_pred EEECCCCccceeCH-HHhccCCCccEEEecCCCeecC
Confidence 55555555554432 1234455555555555555443
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=7.8e-15 Score=103.19 Aligned_cols=112 Identities=24% Similarity=0.282 Sum_probs=68.0
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+.++++|++|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECCCCcCCccCHhHccCCccc
Confidence 455677777777777776654 4556667777777777666554 233444 66666666666665543 4556666
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
+.|++++|.++.++. ..+..+++|+.+++++|.+.+.++
T Consensus 160 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 160 KELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCH
Confidence 666666666665543 234555666666666666655443
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=2.6e-15 Score=108.79 Aligned_cols=123 Identities=22% Similarity=0.285 Sum_probs=72.0
Q ss_pred CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC 93 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~ 93 (152)
+..+++|+.|++++|.++.++.+..+++|+++++++|.++.++.+..+. +|+.+++++|.++.++.+..+++|+.|+++
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLT-KLKMLNVGSNQISDISVLNNLSQLNSLFLN 295 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCC-CcCEEEccCCccCCChhhcCCCCCCEEECc
Confidence 4455556666666666655544555566666666666665555444444 666666666666655555556666666666
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+|.+++.+. ..+..+++|+.+++++|++.+.++ +..+++|+.||
T Consensus 296 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~ 339 (347)
T 4fmz_A 296 NNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP--------LASLSKMDSAD 339 (347)
T ss_dssp SSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCGG--------GGGCTTCSEES
T ss_pred CCcCCCcCh-hHhhccccCCEEEccCCccccccC--------hhhhhccceee
Confidence 666655432 244556666666666666665543 45566666554
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=9.2e-15 Score=100.13 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=71.2
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccC
Confidence 455666777777777766554 4666667777777777766554 244454 67777777777666632 5566677
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
+.|++++|.++.++. ..+..+++|+.+++.+|++....+
T Consensus 132 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 132 RLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSGG
T ss_pred CEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCCc
Confidence 777777777766532 255566677777777777665443
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=4.7e-15 Score=114.52 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=57.6
Q ss_pred CCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEc
Q psy1563 19 PNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYM 92 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l 92 (152)
.+++|++++|+|+.++ .|..+++|++|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4566666666665553 4555666666666666665554 234444 56666666665555532 455556666666
Q ss_pred CCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563 93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
++|.+++++. ..++.+++|+.|++++|.+..
T Consensus 132 s~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 132 VETNLASLEN-FPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCCCCh-hhhhcCcccCeeccccCcccc
Confidence 6665555543 234555555566665555543
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=5.4e-15 Score=114.15 Aligned_cols=121 Identities=26% Similarity=0.291 Sum_probs=104.2
Q ss_pred hhhhh--ccCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC
Q psy1563 7 EKENL--YKFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG 80 (152)
Q Consensus 7 ~~~~~--~~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~ 80 (152)
.++.+ .+|.++++|++|++++|+|+.++ .+..+++|++|++++|+++.++ .+..+. +|+.|++++|.++.++.
T Consensus 63 ~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 63 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLEN 141 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT-TCCEEECTTSCCCCSTT
T ss_pred CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-CCCEEECCCCcCCCCCh
Confidence 34444 35889999999999999999885 6889999999999999999887 356676 99999999999998864
Q ss_pred --CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccch
Q psy1563 81 --IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128 (152)
Q Consensus 81 --~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 128 (152)
++.+++|+.|++++|.++..+....+..++.|+++++++|.+.+.++.
T Consensus 142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 789999999999999998766555677899999999999999887654
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.4e-14 Score=100.90 Aligned_cols=123 Identities=23% Similarity=0.277 Sum_probs=104.5
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+.++.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|+.|
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCcccccChhHhcccCCCCEE
Confidence 357999999999998875 6889999999999999999876 356666 99999999999998864 6789999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++++|.++.++. ..+..+++|+.|++++|.+.+.++.. +..+++|+.|+.
T Consensus 113 ~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~L 162 (251)
T 3m19_A 113 YLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAGA------FDKLTNLQTLSL 162 (251)
T ss_dssp ECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT------TTTCTTCCEEEC
T ss_pred EcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHHH------cCcCcCCCEEEC
Confidence 999999998874 35678999999999999999877543 567888888754
No 31
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=2.1e-14 Score=98.39 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=104.1
Q ss_pred CCCCcEEEccCCcccccc---CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563 17 PNPNTKLSLSTNLIEKIS---GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV 89 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~---~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~ 89 (152)
...++.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|+.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 346789999999999873 3788999999999999999886 466676 99999999999998864 788999999
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|++++|.++.++. ..+..+++|+.+++++|.+.+.++.. +..+++|+.|+.
T Consensus 110 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L 160 (220)
T 2v70_A 110 LMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGA------FDTLHSLSTLNL 160 (220)
T ss_dssp EECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTT------TTTCTTCCEEEC
T ss_pred EECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHH------hcCCCCCCEEEe
Confidence 9999999998753 36778999999999999999876543 667888887753
No 32
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=1.4e-14 Score=99.20 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=104.8
Q ss_pred CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccC--CCCCCcccEEE
Q psy1563 18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLY 91 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~ 91 (152)
+.++.|++++|.++.++ .+..+++|+.|++++|.++.+ + .+..+. +|+.|++++|.++.++. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 68999999999999886 688899999999999999987 3 566776 99999999999998875 67899999999
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+++|.++.++. ..+..+++|+.|++++|.+.+.++.. +..+++|+.|+.
T Consensus 111 L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L 159 (220)
T 2v9t_B 111 LNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGT------FSPLRAIQTMHL 159 (220)
T ss_dssp CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEEC
T ss_pred CCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHH------HhCCCCCCEEEe
Confidence 99999998864 36788999999999999999877542 566788877643
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=2e-14 Score=101.69 Aligned_cols=125 Identities=22% Similarity=0.253 Sum_probs=63.4
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+..+++|++|++++|.++.++ .+..+++|+.+++++|.++.++ . +..+. +|+.+++++|.++.++. +..+++|
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccCHHHhcCcccc
Confidence 334445555555555544432 3444555555555555554443 1 33333 55555555555554432 4455555
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+.|++++|.+++.. ...+..+++|+.+++++|.+.+.++. .+..+++|+.|+
T Consensus 180 ~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~ 231 (285)
T 1ozn_A 180 DRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQYLR 231 (285)
T ss_dssp CEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHH------HHTTCTTCCEEE
T ss_pred CEEECCCCcccccC-HhHccCcccccEeeCCCCcCCcCCHH------HcccCcccCEEe
Confidence 55555555555442 12445556666666666666654432 245566666553
No 34
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=5.7e-15 Score=99.40 Aligned_cols=123 Identities=22% Similarity=0.291 Sum_probs=104.7
Q ss_pred CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCC--ccCCCCCCcccEEEc
Q psy1563 15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK--TKGIGSLKKLKVLYM 92 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~--l~~~~~~~~L~~l~l 92 (152)
..+++++.|++++|.++.++.+..+++|+.+++++|.++.++.+..+. +|+.+++++|.++. .+.+..+++|+.|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 457789999999999998888889999999999999888887777776 99999999999986 345889999999999
Q ss_pred CCCccCCcccccccCCCCCccEEEecCCC-CccccchhHHHHHHHHhCCCcccccC
Q psy1563 93 CHNSVKEWGELNKINDCPVLEDLVFCGNP-IVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++|.+++.. ...+..+++|+.+++++|. +...+. +..+++|+.|+.
T Consensus 120 s~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~~--------l~~l~~L~~L~l 166 (197)
T 4ezg_A 120 SHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIMP--------LKTLPELKSLNI 166 (197)
T ss_dssp CSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCGG--------GGGCSSCCEEEC
T ss_pred cCCccCcHh-HHHHhhCCCCCEEEccCCCCccccHh--------hcCCCCCCEEEC
Confidence 999998733 2367789999999999998 665532 678899988864
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=3.9e-14 Score=95.91 Aligned_cols=123 Identities=24% Similarity=0.285 Sum_probs=103.6
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+++++|++++|.++.++ .+..+++|+.|++++|.++.++. +..+. +|+.+++++|.++.++. +..+++|+.|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 568999999999999876 47889999999999999998863 45565 99999999999998865 6789999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++++|.++.++. ..+..+++|+.+++++|.+.+.++.. +..+++|+.|+.
T Consensus 106 ~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~------~~~l~~L~~L~l 155 (208)
T 2o6s_A 106 ALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDGV------FDRLTSLQYIWL 155 (208)
T ss_dssp ECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEEC
T ss_pred EcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHHH------hccCCCccEEEe
Confidence 999999998764 35678999999999999998776532 567788887754
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=2.7e-14 Score=101.04 Aligned_cols=126 Identities=22% Similarity=0.321 Sum_probs=59.5
Q ss_pred CCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCc-ccccc--Cccccc-----------------------ccc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNM-IKTFT--GLEPLG-----------------------DCL 65 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~-~~~~~--~~~~~~-----------------------~~L 65 (152)
+.++++|+.|++++|.++.+ + .+..+++|++|++++|. ++.++ .+..+. ++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 44555555555555555544 2 44455555555555554 44331 222332 145
Q ss_pred ceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcc
Q psy1563 66 EELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLK 143 (152)
Q Consensus 66 ~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~ 143 (152)
+.+++++|.++.++. +..+++|+.|++++|.+++++. ..+..++.|+.+++++|.+.+..+.. +..+++|+
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~ 204 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHA------FRDLGRLM 204 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTT------TTTCTTCC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccCHhH------ccCccccc
Confidence 555555554444432 3444555555555555554432 12344555555555555555443221 34455555
Q ss_pred ccc
Q psy1563 144 KLD 146 (152)
Q Consensus 144 ~l~ 146 (152)
.|+
T Consensus 205 ~L~ 207 (285)
T 1ozn_A 205 TLY 207 (285)
T ss_dssp EEE
T ss_pred Eee
Confidence 553
No 37
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=4.5e-14 Score=94.92 Aligned_cols=109 Identities=27% Similarity=0.366 Sum_probs=95.3
Q ss_pred CCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLY 91 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~ 91 (152)
.+.++.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|+.|+
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 468999999999999887 7889999999999999999886 366676 99999999999998864 78899999999
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
+++|.++.++. ..+..+++|+.+++.+|++.....
T Consensus 109 L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 109 LHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCc
Confidence 99999998874 357789999999999999986554
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.57 E-value=1.7e-14 Score=104.51 Aligned_cols=124 Identities=23% Similarity=0.271 Sum_probs=85.0
Q ss_pred CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC 93 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~ 93 (152)
+..+++|+.+++++|.+..++.+..+++|+.+++++|.++.++.+..+. +|+.+++++|.++.++.+..+++|+.++++
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISDINAVKDLTKLKMLNVG 273 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCC-CCCEEECCCCccCCChhHhcCCCcCEEEcc
Confidence 3444455555555555544444556667777777777777666555555 788888888877777667777888888888
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+|.+++++ .+..+++|+.+++++|++.+..+. .+..+++|+.|+.
T Consensus 274 ~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L 318 (347)
T 4fmz_A 274 SNQISDIS---VLNNLSQLNSLFLNNNQLGNEDME------VIGGLTNLTTLFL 318 (347)
T ss_dssp SSCCCCCG---GGGGCTTCSEEECCSSCCCGGGHH------HHHTCTTCSEEEC
T ss_pred CCccCCCh---hhcCCCCCCEEECcCCcCCCcChh------HhhccccCCEEEc
Confidence 88887764 456678888888888888765442 3677888887754
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=2.7e-14 Score=100.60 Aligned_cols=114 Identities=26% Similarity=0.278 Sum_probs=79.0
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~ 86 (152)
.+.++++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+. +|+.+++++|.++.++. +..+++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc-cccEEECCCCCccccCchhcccCCC
Confidence 4566777777777777777664 4667777777777777776654 344554 77777777777776643 667777
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
|++|++++|.+++.+....+..+++|+.+++++|.+.+.++
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 88888888877764323356667778888888887776543
No 40
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=8.6e-14 Score=92.02 Aligned_cols=109 Identities=22% Similarity=0.321 Sum_probs=94.7
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+.++.|++++|.++.++ .+..+++|+.|++++|.++.++. +..+. +|+.+++++|.++.++. +..+++|+.+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 578999999999999876 46889999999999999998873 45666 99999999999998865 6789999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
++++|.++.++. ..+..+++|+.+++++|++.+..+
T Consensus 106 ~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence 999999998874 356779999999999999998765
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=5.4e-14 Score=105.51 Aligned_cols=41 Identities=34% Similarity=0.387 Sum_probs=19.1
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKT 54 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~ 54 (152)
+.++++|++|++++|.++.++ .+..+++|+.|++++|.++.
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 334444455555544444443 24444455555555554443
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=8.4e-14 Score=101.79 Aligned_cols=110 Identities=25% Similarity=0.285 Sum_probs=76.3
Q ss_pred CCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563 16 GPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV 89 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~ 89 (152)
++++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|+.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCE
Confidence 6777777777777777664 4667777777777777777665 244554 77778887777776632 667777888
Q ss_pred EEcCCCccCCccccccc---CCCCCccEEEecCCCCccccc
Q psy1563 90 LYMCHNSVKEWGELNKI---NDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~~ 127 (152)
|++++|.++.++.. .+ ..+++|+.|++++|.+...+.
T Consensus 141 L~L~~N~l~~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 141 LYLSQNQISRFPVE-LIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp EECCSSCCCSCCGG-GTC----CTTCCEEECCSSCCCCCCH
T ss_pred EECCCCcCCeeCHH-HhcCcccCCcCCEEECCCCCCCccCH
Confidence 88888877776642 23 457777788888887776553
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.54 E-value=4e-14 Score=106.56 Aligned_cols=121 Identities=26% Similarity=0.330 Sum_probs=66.1
Q ss_pred CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC 93 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~ 93 (152)
+..+++|+.|++++|.++.++.+..+++|+.+++++|.++.++.+..+. +|+.+++++|.+++++.+..+++|+.|+++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK-NLTYLTLYFNNISDISPVSSLTKLQRLFFY 339 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCT-TCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCC-CCCEEECcCCcCCCchhhccCccCCEeECC
Confidence 3344444555555554444433444555555555555555444444443 566666666655555445555666666666
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+|.+++.+ .+..+++|+.+++++|++.+.++ +..+++|+.|+
T Consensus 340 ~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~ 381 (466)
T 1o6v_A 340 NNKVSDVS---SLANLTNINWLSAGHNQISDLTP--------LANLTRITQLG 381 (466)
T ss_dssp SSCCCCCG---GGTTCTTCCEEECCSSCCCBCGG--------GTTCTTCCEEE
T ss_pred CCccCCch---hhccCCCCCEEeCCCCccCccch--------hhcCCCCCEEe
Confidence 66666543 34556666777777776665543 45566665553
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.54 E-value=4.5e-14 Score=102.07 Aligned_cols=123 Identities=20% Similarity=0.122 Sum_probs=79.8
Q ss_pred CCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCc-cC-CCCCCcccEEE
Q psy1563 16 GPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKT-KG-IGSLKKLKVLY 91 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~L~~l~ 91 (152)
++++|+.|++++|.++.+| .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.+... +. +..+++|+.|+
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT-TCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCC-CCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 3667777777777776665 5666777777777777777665 444454 777777777665433 33 56677777777
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+++|.+.+.- ...+..+++|+.+++++|++.+..|.. ++.+++++.++
T Consensus 260 L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~------l~~L~~L~~l~ 307 (328)
T 4fcg_A 260 LKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSL------IAQLPANCIIL 307 (328)
T ss_dssp CTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGG------GGGSCTTCEEE
T ss_pred CCCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHH------HhhccCceEEe
Confidence 7776544322 124566777777777777777666543 56677666553
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=1.9e-14 Score=103.99 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=59.1
Q ss_pred CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccC-CccC-CC-------
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIE-KTKG-IG------- 82 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~-~l~~-~~------- 82 (152)
+.++++|++|++++|.++.+| .+..+++|++|++++|.++.+| .+..+. +|+.|++++|... .+|. +.
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLN-RLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT-TCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCc-CCCEEECCCCCCccccChhHhhccchhh
Confidence 344666677777776666655 5666666777777666666555 344443 5566666554322 2222 21
Q ss_pred --CCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 83 --SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 83 --~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
.+++|+.|++++|.++.++. .+..+++|+.|++++|.+.+.
T Consensus 179 ~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCC
T ss_pred hccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcC
Confidence 24555555555555554432 344455555555555555543
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=6.6e-14 Score=104.67 Aligned_cols=86 Identities=23% Similarity=0.308 Sum_probs=39.4
Q ss_pred CccCcEEEcCCCccccccCccccccccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEE
Q psy1563 39 LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLV 116 (152)
Q Consensus 39 ~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~ 116 (152)
+++|+.|++++|.++.+|.+..+. +|+.|++++|.++.++. +..+++|+.|++++|.++.++. ..+..+++|+.|+
T Consensus 184 l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLREIPNLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEIN 261 (440)
T ss_dssp CSSCCEEECTTSCCSSCCCCTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEE
T ss_pred ccccCeecCCCCcCccccccCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEE
Confidence 334444444444444444333333 44445555544444421 3444455555555555444432 2344455555555
Q ss_pred ecCCCCcccc
Q psy1563 117 FCGNPIVENL 126 (152)
Q Consensus 117 l~~n~~~~~~ 126 (152)
+++|.++..+
T Consensus 262 L~~N~l~~~~ 271 (440)
T 3zyj_A 262 LAHNNLTLLP 271 (440)
T ss_dssp CTTSCCCCCC
T ss_pred CCCCCCCccC
Confidence 5555555444
No 47
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.5e-13 Score=92.35 Aligned_cols=117 Identities=20% Similarity=0.180 Sum_probs=98.5
Q ss_pred cEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC--CCCCCcccEEEcCCCc
Q psy1563 21 TKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNS 96 (152)
Q Consensus 21 ~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~ 96 (152)
+.++.+++.++.+| .+ .++++.|++++|.++.+| .+..+. +|+.|++++|.++.++. +..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57899999999888 44 368999999999999887 566666 99999999999998864 7899999999999999
Q ss_pred cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 97 VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 97 i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++.++. ..+..+++|+.|++++|.+...++.. +..+++|+.|+.
T Consensus 90 l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L 133 (193)
T 2wfh_A 90 LRCIPP-RTFDGLKSLRLLSLHGNDISVVPEGA------FNDLSALSHLAI 133 (193)
T ss_dssp CCBCCT-TTTTTCTTCCEEECCSSCCCBCCTTT------TTTCTTCCEEEC
T ss_pred cCEeCH-HHhCCCCCCCEEECCCCCCCeeChhh------hhcCccccEEEe
Confidence 998874 36788999999999999999876532 567788877743
No 48
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=1.1e-13 Score=101.23 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=101.3
Q ss_pred CCCCcEEEccCCcccccc--CCc-CCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLM-SLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV 89 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~-~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~ 89 (152)
.+.++.|++++|.++.++ .+. .+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|+.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 346899999999999886 455 8999999999999999886 466676 99999999999998854 788999999
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|++++|.|+.++. ..+..+++|+.|++++|.+...+... +. -...+++|+.||.
T Consensus 117 L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~-~~--~~~~l~~L~~L~L 170 (361)
T 2xot_A 117 LLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVEL-IK--DGNKLPKLMLLDL 170 (361)
T ss_dssp EECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGG-TC------CTTCCEEEC
T ss_pred EECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHH-hc--CcccCCcCCEEEC
Confidence 9999999998753 36788999999999999999876531 00 0145777777654
No 49
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=2.3e-13 Score=91.25 Aligned_cols=109 Identities=25% Similarity=0.266 Sum_probs=94.0
Q ss_pred CCCcEEEccCCcccccc-C--CcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 18 NPNTKLSLSTNLIEKIS-G--LMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~-~--l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
..++.|++++|.++.++ . +..+++|+.|++++|.++.+ + .+..+. +|+.|++++|.++.++. +..+++|++|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 48999999999999875 2 78999999999999999987 3 566676 99999999999998854 7889999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccch
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 128 (152)
++++|.++.... ..+..+++|+.+++.+|++....+.
T Consensus 108 ~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 108 NLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp ECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred ECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCcc
Confidence 999999998753 3677899999999999999977653
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=9.4e-14 Score=103.86 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=77.0
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccc------------------------cc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLG------------------------DC 64 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~------------------------~~ 64 (152)
.+.++++|+.|++++|.++.++ .+..+++|+.|++++|.++.++. +..+. ++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 4667777888888888777665 46677777777777777765541 22222 25
Q ss_pred cceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563 65 LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK 144 (152)
Q Consensus 65 L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~ 144 (152)
|+.|++++|.++.++.+..+++|+.|++++|.+++++. ..+..+++|+.|++.+|.+.+.++.. +..+++|+.
T Consensus 187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~ 259 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNA------FDNLQSLVE 259 (440)
T ss_dssp CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTS------STTCTTCCE
T ss_pred cCeecCCCCcCccccccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEEChhh------hcCCCCCCE
Confidence 55555655655555555555666666666666665532 24555666666666666666544322 445555555
Q ss_pred cc
Q psy1563 145 LD 146 (152)
Q Consensus 145 l~ 146 (152)
||
T Consensus 260 L~ 261 (440)
T 3zyj_A 260 IN 261 (440)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=104.19 Aligned_cols=126 Identities=24% Similarity=0.201 Sum_probs=85.4
Q ss_pred cCCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~ 86 (152)
.+.++++|++|++++|.++.+ + .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.+.. +..+++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC-CCCEEECCCCccccCChhHcccccc
Confidence 466677777777777777765 3 5677777777777777777665 234454 77777777777766532 667777
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
|+.|++++|.++.+.. ..+..+++|+.|++.+|.+.+.++. .+..+++|+.|+
T Consensus 130 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~ 182 (477)
T 2id5_A 130 LKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE------ALSHLHGLIVLR 182 (477)
T ss_dssp CCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH------HHTTCTTCCEEE
T ss_pred CCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh------HhcccCCCcEEe
Confidence 7777777777776543 2566677788888888877765532 255666666553
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.52 E-value=8.6e-14 Score=99.28 Aligned_cols=109 Identities=22% Similarity=0.181 Sum_probs=47.1
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccc--cc-CccccccccceeeccccccCCccC--CCCCCc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKT--FT-GLEPLGDCLEELWISYNFIEKTKG--IGSLKK 86 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~--~~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~ 86 (152)
+..+++|+.|++++|.+.... .+..+++|+.+++++|.++. .+ .+..+. +|+.+++++|.++.++. +..+++
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCC
Confidence 334444444444444444321 23444444444444444432 22 222232 45555555554444311 344444
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
|+.|++++|.+++.+.. .+..+++|+.+++++|.+.+
T Consensus 201 L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCB
T ss_pred CCEEECCCCccCccChh-hccCcccCCEeECCCCCCcc
Confidence 55555555544443321 23344444444444444443
No 53
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=1.2e-13 Score=92.72 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=97.8
Q ss_pred cEEEccCCcccccc-CCcCCccCcEEEcCCCccccccC---ccccccccceeeccccccCCcc-C-CCCCCcccEEEcCC
Q psy1563 21 TKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTG---LEPLGDCLEELWISYNFIEKTK-G-IGSLKKLKVLYMCH 94 (152)
Q Consensus 21 ~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~---~~~~~~~L~~l~l~~n~~~~l~-~-~~~~~~L~~l~l~~ 94 (152)
+.++++++.++.+| .+. .+++.|++++|.++.++. +..+. +|+.|++++|.++.+. . +..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68999999999888 443 389999999999998863 55666 9999999999999883 3 78999999999999
Q ss_pred CccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|.++.++. ..+..+++|+.|++++|.+.+.++.. +..+++|+.|+.
T Consensus 88 N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L 133 (192)
T 1w8a_A 88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGS------FEHLNSLTSLNL 133 (192)
T ss_dssp CCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTS------STTCTTCCEEEC
T ss_pred CcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHH------hhcCCCCCEEEe
Confidence 99998764 35778999999999999999876543 567888887743
No 54
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=3.2e-13 Score=89.30 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=89.3
Q ss_pred CcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcCC
Q psy1563 20 NTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCH 94 (152)
Q Consensus 20 l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~ 94 (152)
-+.+++++|.++.+| .+ .++++.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999999888 44 378999999999999884 456676 99999999999999865 57899999999999
Q ss_pred CccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
|.++.++. ..+..+++|+.+++.+|++...+.
T Consensus 91 N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 99998874 357789999999999999987764
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=2.3e-13 Score=95.84 Aligned_cols=122 Identities=24% Similarity=0.282 Sum_probs=102.8
Q ss_pred CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEE
Q psy1563 18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLY 91 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~ 91 (152)
+.++.|++++|.++.++ .+..+++|+.+++++|.++.++ .+..+. +|+.+++++|.++.++. +..+++|+.|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46999999999999875 6888999999999999999876 356666 99999999999988753 78899999999
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCcccc-chhHHHHHHHHhCCCcccccC
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL-EESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+++|.++.++.. .+..+++|+.+++++|.+.+.. +.. +..+++|+.|+.
T Consensus 107 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~------~~~l~~L~~L~L 156 (276)
T 2z62_A 107 AVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEY------FSNLTNLEHLDL 156 (276)
T ss_dssp CTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGG------GGGCTTCCEEEC
T ss_pred CCCCCccccCch-hcccCCCCCEEECcCCccceecCchh------hccCCCCCEEEC
Confidence 999999987643 5778999999999999998732 322 677888888764
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=6.9e-14 Score=105.29 Aligned_cols=120 Identities=27% Similarity=0.349 Sum_probs=58.0
Q ss_pred CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCC
Q psy1563 15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCH 94 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~ 94 (152)
..+++|+.|++++|.++.++.+..+++|+.+++++|.++.++.+..+. +|+.+++++|.++.++.+..+++|+.|++++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKNLTYLTLYF 318 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCT-TCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred hcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCC-ccCeEEcCCCcccCchhhcCCCCCCEEECcC
Confidence 334444444444444443333344444444444444444443333333 5555555555554444444555555555555
Q ss_pred CccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
|.+++.+. +..+++|+.+++.+|.+.+.+. +..+++|+.|+
T Consensus 319 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~~L~ 359 (466)
T 1o6v_A 319 NNISDISP---VSSLTKLQRLFFYNNKVSDVSS--------LANLTNINWLS 359 (466)
T ss_dssp SCCSCCGG---GGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEE
T ss_pred CcCCCchh---hccCccCCEeECCCCccCCchh--------hccCCCCCEEe
Confidence 55554432 3345555566666665554421 44555555553
No 57
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=3.7e-14 Score=112.15 Aligned_cols=114 Identities=24% Similarity=0.203 Sum_probs=99.1
Q ss_pred ccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCccc
Q psy1563 12 YKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLK 88 (152)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~ 88 (152)
..+..++.|+.|++++|.+..++ .+..+++|+.|++++|.++.+| .+..+. +|+.|+|++|.++.+|. +..+++|+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLS-NLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGT-TCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCC-CCCEEeCcCCcCCccChhhcCCCCCC
Confidence 34677899999999999999887 6778999999999999999888 566776 99999999999998865 88999999
Q ss_pred EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccch
Q psy1563 89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128 (152)
Q Consensus 89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 128 (152)
.|++++|.++.+|. .+..+++|+.|++++|++.+.++.
T Consensus 297 ~L~L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 297 YFYFFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp EEECCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHHHH
T ss_pred EEECCCCCCCccCh--hhhcCCCccEEeCCCCccCCCChH
Confidence 99999999998875 578899999999999999987654
No 58
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=6.4e-13 Score=87.51 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=90.1
Q ss_pred CCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcC
Q psy1563 19 PNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMC 93 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~ 93 (152)
..+.+++++|.++.+| .+ .++++.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999999988 44 378999999999999884 456676 99999999999998865 6789999999999
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
+|.++.++. ..+..+++|+.+++++|++....+
T Consensus 87 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998874 357789999999999999987764
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=5.3e-14 Score=102.33 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=52.9
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC---CCCCCc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG---IGSLKK 86 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~---~~~~~~ 86 (152)
+.++++|+.|++++|.++.++ .+..+++|++|++++|.++.++ . +..+. +|+.+++++|.++.++. +..+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCC
Confidence 445555555555555555442 3455555555555555555444 1 33333 55555555555554432 344555
Q ss_pred ccEEEcCCC-ccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563 87 LKVLYMCHN-SVKEWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 87 L~~l~l~~n-~i~~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
|++|++++| .++.++. ..+..+++|+.+++++|.+.+
T Consensus 151 L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp CCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCE
T ss_pred CcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCc
Confidence 555555555 2443321 133344444455554444443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=1.4e-13 Score=103.20 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=19.9
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGR 49 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~ 49 (152)
+.++++|++|++++|.++.++ .+..+++|+.|++++
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 455666666666666666553 344444444444444
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=4e-14 Score=97.78 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=49.0
Q ss_pred CCCCCCCcEEEccCCc-ccccc--CCcCCccCcEEEcCC-Ccccccc--CccccccccceeeccccccCCccCCCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNL-IEKIS--GLMSLKKLRILALGR-NMIKTFT--GLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~-l~~~~--~l~~~~~L~~l~l~~-n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L 87 (152)
+.++++|+.|++++|. ++.++ .+..+++|+++++++ |.++.++ .+..+. +|+.+++++|.++.++.+..+++|
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~-~L~~L~l~~n~l~~lp~~~~l~~L 129 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLKMFPDLTKVYST 129 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT-TCCEEEEEEECCCSCCCCTTCCBC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-CCCEEeCCCCCCcccccccccccc
Confidence 4455555555555554 55443 344555555555555 5555443 222333 455555555544444433333333
Q ss_pred c---EEEcCCC-ccCCcccccccCCCCCcc-EEEecCCCCc
Q psy1563 88 K---VLYMCHN-SVKEWGELNKINDCPVLE-DLVFCGNPIV 123 (152)
Q Consensus 88 ~---~l~l~~n-~i~~~~~~~~~~~l~~L~-~l~l~~n~~~ 123 (152)
+ .+++++| .++.++. ..+..++.|+ .+++++|.+.
T Consensus 130 ~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC
T ss_pred ccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc
Confidence 3 4444444 4443332 1233334444 4444444333
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=7.2e-14 Score=96.51 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=71.4
Q ss_pred CCCCCCCcEEEccC-Ccccccc--CCcCCccCcEEEcCCCccccccCccccccccc---eeecccc-ccCCccC--CCCC
Q psy1563 14 FKGPNPNTKLSLST-NLIEKIS--GLMSLKKLRILALGRNMIKTFTGLEPLGDCLE---ELWISYN-FIEKTKG--IGSL 84 (152)
Q Consensus 14 ~~~l~~l~~L~l~~-n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~---~l~l~~n-~~~~l~~--~~~~ 84 (152)
+.++++|++|++++ |.++.++ .+..+++|+.+++++|.++.+|.+..+. +|+ .+++++| .++.++. +..+
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCC-BCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccc-ccccccEEECCCCcchhhcCcccccch
Confidence 45566666666666 6666554 4556666666666666666665544444 555 6666666 6665543 5566
Q ss_pred Cccc-EEEcCCCccCCcccccccCCCCCccEEEecCCC-CccccchhHHHHHHHHhC-CCccccc
Q psy1563 85 KKLK-VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP-IVENLEESAYRVEIKKRL-PRLKKLD 146 (152)
Q Consensus 85 ~~L~-~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l-~~L~~l~ 146 (152)
++|+ .+++++|.++.++.. .+.. ++|+.+++.+|+ +...++.. +..+ ++|+.||
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~~~~------~~~l~~~L~~L~ 211 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGY-AFNG-TKLDAVYLNKNKYLTVIDKDA------FGGVYSGPSLLD 211 (239)
T ss_dssp BSSEEEEECCSCCCCEECTT-TTTT-CEEEEEECTTCTTCCEECTTT------TTTCSBCCSEEE
T ss_pred hcceeEEEcCCCCCcccCHh-hcCC-CCCCEEEcCCCCCcccCCHHH------hhccccCCcEEE
Confidence 6666 666666666655431 2222 556666666664 55443321 3444 5555553
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=104.64 Aligned_cols=112 Identities=27% Similarity=0.291 Sum_probs=58.1
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+.++++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+. +|+.+++++|.++.++. +..+++|
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc-ccccccccccccccCCCccccccccc
Confidence 445555555555555555443 3455555555555555555443 233443 55555555555555433 4555555
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
++|++++|.++.+..+..+..+++|+.+++++|.+.+.+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 555555555554322224445555566666655555443
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.49 E-value=2.7e-13 Score=99.79 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=79.3
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCC
Confidence 445677888888888777664 5677778888888888777664 244554 78888888888777754 4677788
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
++|++++|.++..+. ..+..+++|+.+++++|.+.+.
T Consensus 144 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 144 TTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBC
T ss_pred cEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCcc
Confidence 888888887776653 2466777788888888877754
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=6.2e-14 Score=100.75 Aligned_cols=107 Identities=21% Similarity=0.131 Sum_probs=66.8
Q ss_pred CCCCCCCcEEEccCCcccccc--CC-cCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CCCCCcccE
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GL-MSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKV 89 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l-~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~ 89 (152)
+..+++|+.|++++|.++.++ .+ ..+++|+.|++++|.++.++....+. +|+.+++++|.++.++. +..+++|+.
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT-TCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccc-cCCEEECCCCcCCcchhhhcccCcccE
Confidence 344566666666666665542 22 24566666666666666655444444 67777777777666633 556677777
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~ 123 (152)
|++++|.++.++. .+..++.|+.+++++|++.
T Consensus 219 L~L~~N~l~~l~~--~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 219 ISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECTTSCCCEECT--TCCCCTTCCEEECTTCCCB
T ss_pred EECcCCcccchhh--HhhcCCCCCEEEccCCCcc
Confidence 7777777776553 4556677777777777776
No 66
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.49 E-value=1.8e-13 Score=105.67 Aligned_cols=112 Identities=26% Similarity=0.223 Sum_probs=58.5
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+.++++|+.|++++|.++.++ .+..+++|++|++++|.++.+ | .+..+. +|+.+++++|.++.++. ++.+++|
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCC
Confidence 445555555555555555442 345555555555555555544 2 334444 55555555555554431 4555555
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
++|++++|.+++......+..+++|+++++++|.+.+.+
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 555555555554222224455555666666665555443
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=99.74 Aligned_cols=124 Identities=27% Similarity=0.307 Sum_probs=102.1
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+++++|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.+++++|.++.++. +..+++|++|
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 358999999999999886 5889999999999999999874 466676 99999999999998865 7789999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCC-CccccchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNP-IVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++++|.+++++....+..+++|+.+++++|. +...++.. +..+++|+.|+.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------~~~l~~L~~L~l 181 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD------FAGLTFLEELEI 181 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT------TTTCCEEEEEEE
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH------ccCCCCCCEEEC
Confidence 9999999988753467889999999999994 55544322 566777777643
No 68
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=4.2e-14 Score=92.72 Aligned_cols=113 Identities=24% Similarity=0.119 Sum_probs=96.3
Q ss_pred CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccc-ccCccc-cccccceeeccccccCCcc---CCCCCCccc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT-FTGLEP-LGDCLEELWISYNFIEKTK---GIGSLKKLK 88 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~-~~~~~~-~~~~L~~l~l~~n~~~~l~---~~~~~~~L~ 88 (152)
+..+++|+.|++++|.++.++.+..+++|+.|++++|.++. +|.... +. +|+.+++++|.++.++ .+..+++|+
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 46789999999999999888878889999999999999987 565444 55 9999999999999875 377899999
Q ss_pred EEEcCCCccCCccc--ccccCCCCCccEEEecCCCCccccc
Q psy1563 89 VLYMCHNSVKEWGE--LNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 89 ~l~l~~n~i~~~~~--~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
.|++++|.++..+. ...+..+++|+.+++.+|.....+.
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999999998764 1256789999999999999877654
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.48 E-value=2.6e-13 Score=96.80 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=84.7
Q ss_pred CCCCCCCcEEEccCCcccccc---CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCC--ccC-CCCCC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS---GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEK--TKG-IGSLK 85 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~---~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~--l~~-~~~~~ 85 (152)
+..+++|+.|++++|.++.++ .+..+++|+.+++++|.++... .+..+. +|+.+++++|.++. ++. +..++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccccccchhHHhhCc
Confidence 455666777777777666553 3556677777777777766443 234454 78888888887765 333 66778
Q ss_pred cccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 86 KLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 86 ~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+|+.|++++|.+++.+. ..+..+++|+.+++++|.+.+.++.. +..+++|+.||.
T Consensus 176 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L 230 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFP------YKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCSGG------GTTCTTCCEEEC
T ss_pred CCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCccChhh------ccCcccCCEeEC
Confidence 88888888888877642 35667788888888888887765432 456677776653
No 70
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.48 E-value=4.4e-13 Score=100.22 Aligned_cols=113 Identities=27% Similarity=0.286 Sum_probs=91.6
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCcc--CCCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTK--GIGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~--~~~~~~~ 86 (152)
.+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++ .+..+++
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-TCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc-cCCEEECCCCcccccChhhcccccc
Confidence 3667888999999999988764 6778889999999999888764 345565 8999999999888773 2778899
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
|+.|++++|.+++++. ..+..+++|+.+++++|++.+..+
T Consensus 373 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 373 LKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence 9999999999988764 356778899999999999988765
No 71
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=5.4e-13 Score=103.06 Aligned_cols=123 Identities=23% Similarity=0.141 Sum_probs=87.9
Q ss_pred cCCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCcc--CCCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTK--GIGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~--~~~~~~~ 86 (152)
.+.++++|++|++++|.++.+ + .+..+++|++|++++|.++.++ .+..+. +|+.|++++|.++.++ .+..+++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc-cccEeeccccCcccCCcchhccCCc
Confidence 466777888888888887765 3 5777888888888888777653 455565 8888888888887762 3677788
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcc
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLK 143 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~ 143 (152)
|++|++++|.+++++.. .+..+++|+.+++++|.+.+.++. .+..+++++
T Consensus 131 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~ 180 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKE------DMSSLQQAT 180 (606)
T ss_dssp CCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHH------HHHTTTTCC
T ss_pred ccEEECCCCcccccCcc-cccCCcccCEEEcccCcccccChh------hhhhhcccc
Confidence 88888888888776433 333477888888888888765443 256777776
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.47 E-value=3.4e-13 Score=101.54 Aligned_cols=80 Identities=24% Similarity=0.205 Sum_probs=34.3
Q ss_pred CCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCc
Q psy1563 17 PNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNS 96 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~ 96 (152)
+++|+.|++++|.++.++.+..+++|+.+++++|.++.++ +..+. +|+.+++++|.++.++ +..+++|++|++++|.
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNT-NLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCT-TCSEEECCSSCCSCCC-CTTCTTCCEEECCSSC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCC-CCCEEECcCCCCceee-cCCCCcCCEEECCCCc
Confidence 4444444444444444444444444444444444444433 23332 4444444444444332 3334444444444444
Q ss_pred cCC
Q psy1563 97 VKE 99 (152)
Q Consensus 97 i~~ 99 (152)
+++
T Consensus 118 l~~ 120 (457)
T 3bz5_A 118 LTK 120 (457)
T ss_dssp CSC
T ss_pred CCe
Confidence 433
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=3.7e-13 Score=104.20 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=89.4
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+.++++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 345778888888888887664 6777888888888888887765 245565 88888888888887764 5778888
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
++|++++|.++..+. ..+..+++|+.|++++|.+.+.+ +..+++|+.|+
T Consensus 150 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~~L~ 198 (597)
T 3oja_B 150 TTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHAN 198 (597)
T ss_dssp CEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCSEEE
T ss_pred CEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhhhhh
Confidence 888888888877653 35677888888888888887653 34455555543
No 74
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.47 E-value=6.5e-13 Score=102.62 Aligned_cols=123 Identities=23% Similarity=0.274 Sum_probs=104.8
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCc-cC-CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKT-KG-IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~L~~l 90 (152)
.+.++.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+. +|+.|++++|.++.+ |. +..+++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchh-hcCEeECCCCcccccChhhcCCcccCCEE
Confidence 478999999999999875 6889999999999999999874 456776 999999999999988 43 8899999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCcc-ccchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE-NLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++++|.+++.+.. .+..+++|+.+++++|.+.+ ..+.. ++.+++|+.|+.
T Consensus 110 ~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~------~~~l~~L~~L~L 160 (606)
T 3vq2_A 110 VAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAY------FSNLTNLVHVDL 160 (606)
T ss_dssp ECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGG------GGTCTTCCEEEC
T ss_pred EccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHh------HhhcCCCCEEEc
Confidence 9999999987743 57889999999999999986 32332 678899988864
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.46 E-value=2.1e-13 Score=102.64 Aligned_cols=125 Identities=22% Similarity=0.210 Sum_probs=105.2
Q ss_pred hhhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCc
Q psy1563 7 EKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKK 86 (152)
Q Consensus 7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~ 86 (152)
.++.+..+..+++|++|++++|.++.++ +..+++|+.+++++|.++.++ +..+. +|+.+++++|.++.++ +..+++
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~-~L~~L~L~~N~l~~l~-~~~l~~ 128 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLT-KLTYLNCDTNKLTKLD-VSQNPL 128 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCT-TCCEEECCSSCCSCCC-CTTCTT
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCC-cCCEEECCCCcCCeec-CCCCCc
Confidence 3444556788999999999999999886 778999999999999999876 66676 9999999999999886 789999
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|+.|++++|.+++++ +..++.|+.+++++|...+..+ +..+++|+.|+.
T Consensus 129 L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~l 177 (457)
T 3bz5_A 129 LTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD--------VTPQTQLTTLDC 177 (457)
T ss_dssp CCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC--------CTTCTTCCEEEC
T ss_pred CCEEECCCCccceec----cccCCcCCEEECCCCCcccccc--------cccCCcCCEEEC
Confidence 999999999999863 5678999999999996555443 567788887764
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.46 E-value=8.4e-13 Score=103.29 Aligned_cols=126 Identities=26% Similarity=0.244 Sum_probs=98.5
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC----------ccccccccceeeccccccCCccC
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG----------LEPLGDCLEELWISYNFIEKTKG 80 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~----------~~~~~~~L~~l~l~~n~~~~l~~ 80 (152)
.+.++++|+.|++++|.++.++ .+..+++|+.+++++|.++.++. +..+. +|+.+++++|.++.++.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPV 553 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT-TCCEEECCSSCCCCCCT
T ss_pred ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC-CCCEEECCCCCCCCCCH
Confidence 4667888999999999988775 47788899999999998876531 34455 89999999999988864
Q ss_pred --CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHH-hCCCccccc
Q psy1563 81 --IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKK-RLPRLKKLD 146 (152)
Q Consensus 81 --~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~l~~L~~l~ 146 (152)
+..+++|+.+++++|.++.++. ..+..++.|+.+++++|.+++.++.. +. .+++|+.++
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~~~~~L~~l~ 615 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKKV------FGPAFRNLTELD 615 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCHHH------HHHHHTTCSEEE
T ss_pred HHcccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccChhH------hcccccccCEEE
Confidence 7788999999999999998774 35677899999999999998776531 33 556666654
No 77
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=4.5e-14 Score=93.39 Aligned_cols=116 Identities=25% Similarity=0.291 Sum_probs=95.3
Q ss_pred hhhhccCCCCC-CCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-Cc-cccccccceeeccccccCCccC---C
Q psy1563 8 KENLYKFKGPN-PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GL-EPLGDCLEELWISYNFIEKTKG---I 81 (152)
Q Consensus 8 ~~~~~~~~~l~-~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~-~~~~~~L~~l~l~~n~~~~l~~---~ 81 (152)
++.+..+..+. +|+.|++++|.++.++.+..+++|+++++++|.++.++ .+ ..+. +|+.+++++|.++.++. +
T Consensus 31 l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~l 109 (176)
T 1a9n_A 31 IPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DLTELILTNNSLVELGDLDPL 109 (176)
T ss_dssp CCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TCCEEECCSCCCCCGGGGGGG
T ss_pred CchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCC-CCCEEECCCCcCCcchhhHhh
Confidence 34444454554 99999999999998888889999999999999999887 44 5565 99999999999988764 6
Q ss_pred CCCCcccEEEcCCCccCCcccc--cccCCCCCccEEEecCCCCcc
Q psy1563 82 GSLKKLKVLYMCHNSVKEWGEL--NKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 82 ~~~~~L~~l~l~~n~i~~~~~~--~~~~~l~~L~~l~l~~n~~~~ 124 (152)
..+++|+.+++++|.++..+.. ..+..+++|+.+++++|...+
T Consensus 110 ~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7889999999999999876631 125678999999999998764
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.46 E-value=1.7e-13 Score=98.50 Aligned_cols=120 Identities=23% Similarity=0.257 Sum_probs=84.1
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--Ccc-ccccccceeeccccccCCccCCCCCCcccEEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLE-PLGDCLEELWISYNFIEKTKGIGSLKKLKVLY 91 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~-~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~ 91 (152)
+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+. .+. +|+.+++++|.++.++....+++|+.|+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~l~~L~~L~ 197 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-cCCEEECCCCcCcccccccccccCCEEE
Confidence 556666777777776553 5566777888888888777653 332 333 7888888888887776655678888888
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+++|.++.++. .+..+++|+.+++++|.+...+.. +..+++|+.|+
T Consensus 198 Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~~~-------~~~l~~L~~L~ 243 (317)
T 3o53_A 198 LSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEKA-------LRFSQNLEHFD 243 (317)
T ss_dssp CCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECTT-------CCCCTTCCEEE
T ss_pred CCCCcCCcchh--hhcccCcccEEECcCCcccchhhH-------hhcCCCCCEEE
Confidence 88888887654 366778888888888888765431 45566666664
No 79
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.46 E-value=4.5e-13 Score=100.20 Aligned_cols=123 Identities=24% Similarity=0.273 Sum_probs=103.0
Q ss_pred CCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+.++.|++++|.+..+ + .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|+.|
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 36899999999999876 3 6888999999999999998774 556666 99999999999987743 7889999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++++|.++.... ..+..+++|+.+++++|.+.+.++.. +..+++|+.|+.
T Consensus 353 ~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~l 402 (455)
T 3v47_A 353 DLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDGI------FDRLTSLQKIWL 402 (455)
T ss_dssp ECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEEC
T ss_pred ECCCCcccccCh-hhccccccccEEECCCCccccCCHhH------hccCCcccEEEc
Confidence 999999998753 36788999999999999999876532 567888887743
No 80
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=2.5e-13 Score=99.97 Aligned_cols=124 Identities=16% Similarity=0.249 Sum_probs=104.7
Q ss_pred CCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563 16 GPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV 89 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~ 89 (152)
.+++++.++++++.++.+| .+..+++|+++++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3688999999999999887 3678999999999999998875 556676 99999999999998853 789999999
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|++++|.+++++. ..+..+++|+.+++++|.+.+.++.. +..+++|+.|+.
T Consensus 122 L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~l 172 (390)
T 3o6n_A 122 LVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDT------FQATTSLQNLQL 172 (390)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTT------TSSCTTCCEEEC
T ss_pred EECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccChhh------ccCCCCCCEEEC
Confidence 9999999998874 24678999999999999998776542 567788887754
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=8.2e-13 Score=101.19 Aligned_cols=123 Identities=25% Similarity=0.317 Sum_probs=104.5
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+.++.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCch-hCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 457999999999999875 7889999999999999999875 456676 99999999999988753 7899999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccc-cchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN-LEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++++|.++.++.. .++.+++|+.+++++|.+.+. .+.. +..+++|+.|+.
T Consensus 106 ~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~------~~~l~~L~~L~l 156 (570)
T 2z63_A 106 VAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEY------FSNLTNLEHLDL 156 (570)
T ss_dssp ECTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCCCCCGG------GGGCTTCCEEEC
T ss_pred cccccccccCCCc-cccccccccEEecCCCccceecChhh------hcccCCCCEEeC
Confidence 9999999988753 578899999999999999863 2332 678889988865
No 82
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.45 E-value=5.8e-13 Score=100.33 Aligned_cols=123 Identities=21% Similarity=0.207 Sum_probs=104.2
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+.++.|++++|.++.++ .+..+++|+.|++++|.++.+ + .+..+. +|+.|++++|.++.++. +..+++|+.|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 468999999999999874 788999999999999999877 3 566676 99999999999998864 6789999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++++|.++.... ..+..+++|+.|++.+|.+.+..+.. +..+++|+.|+.
T Consensus 110 ~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l 159 (477)
T 2id5_A 110 DISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRA------FSGLNSLEQLTL 159 (477)
T ss_dssp ECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTS------STTCTTCCEEEE
T ss_pred ECCCCccccCCh-hHccccccCCEEECCCCccceeChhh------ccCCCCCCEEEC
Confidence 999999998753 36788999999999999998765532 567788887753
No 83
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=1.4e-12 Score=86.11 Aligned_cols=118 Identities=21% Similarity=0.304 Sum_probs=97.0
Q ss_pred CcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcccEEEcCC
Q psy1563 20 NTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCH 94 (152)
Q Consensus 20 l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~ 94 (152)
.+.++++++.++.+| .+ .++++.+++++|.++.++. +..+. +|+.+++++|.++.++. +..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467899999998887 33 4789999999999998763 45565 99999999999998865 67899999999999
Q ss_pred CccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|.++.++. ..+..+++|+.+++++|.+.+.++. ++..+++|+.|+.
T Consensus 86 N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~l~~L~~L~l 131 (177)
T 2o6r_A 86 NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDG------IFDRLTSLQKIWL 131 (177)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEEC
T ss_pred CCccccCH-HHhhCCcccCEEECcCCcceEeCHH------HhcCCcccCEEEe
Confidence 99998774 3567899999999999999977653 2466788887743
No 84
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.45 E-value=7.8e-13 Score=101.03 Aligned_cols=118 Identities=25% Similarity=0.253 Sum_probs=53.9
Q ss_pred CCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCC
Q psy1563 16 GPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCH 94 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~ 94 (152)
.+++|+.|++++|+++.+| .+..+++|+.+++++|.++.++.... ++|+.+++++|.+++++ ..+++|+.|++++
T Consensus 385 ~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS--LFLPRLQELYISR 460 (549)
T ss_dssp GCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCS
T ss_pred cCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhc--ccCChhcEEECCC
Confidence 3444444444444444443 33334444444444444433321100 13333333333333221 2455666666666
Q ss_pred CccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
|+++.+|. ...++.|+.+++++|.+++.++.. +..+++|+.|+
T Consensus 461 N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~ 503 (549)
T 2z81_A 461 NKLKTLPD---ASLFPVLLVMKISRNQLKSVPDGI------FDRLTSLQKIW 503 (549)
T ss_dssp SCCSSCCC---GGGCTTCCEEECCSSCCCCCCTTG------GGGCTTCCEEE
T ss_pred CccCcCCC---cccCccCCEEecCCCccCCcCHHH------HhcCcccCEEE
Confidence 66665543 233556666666666666554432 44555555553
No 85
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.44 E-value=5.9e-13 Score=95.56 Aligned_cols=126 Identities=21% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCCCCCCcEEEccCCccc-ccc-CCcCCccCcEEEcCCCccc-ccc-Cccccccc-----------------------cc
Q psy1563 14 FKGPNPNTKLSLSTNLIE-KIS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDC-----------------------LE 66 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~-~~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~-----------------------L~ 66 (152)
+.++++|++|++++|.++ .++ .+..+++|++|++++|.++ .+| .+..+.+. |+
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~ 200 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA 200 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCccc
Confidence 444555555555555554 233 4445555555555555544 222 22222112 45
Q ss_pred eeeccccccCCc-cC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563 67 ELWISYNFIEKT-KG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK 144 (152)
Q Consensus 67 ~l~l~~n~~~~l-~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~ 144 (152)
.+++++|.++.. +. +..+++|+.|++++|.++.... .+..+++|+.+++++|.+.+..+.. +..+++|+.
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~ 272 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQG------LTQLKFLHS 272 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGG------GGGCTTCCE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCChH------HhcCcCCCE
Confidence 555555544433 11 4556666666666666654332 2445666777777777766544432 455666665
Q ss_pred ccC
Q psy1563 145 LDG 147 (152)
Q Consensus 145 l~~ 147 (152)
|+.
T Consensus 273 L~L 275 (313)
T 1ogq_A 273 LNV 275 (313)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 86
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.44 E-value=4.4e-13 Score=102.38 Aligned_cols=103 Identities=27% Similarity=0.309 Sum_probs=59.0
Q ss_pred CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEE
Q psy1563 18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLY 91 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~ 91 (152)
+.++.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+. +|+.|++++|.++.++. +..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 45666666666665542 4556666666666666665543 244444 66666666666655532 55566666666
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCC
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNP 121 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~ 121 (152)
+++|.++..+....+..+++|+.+++++|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCc
Confidence 666666544322244555566666666655
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.43 E-value=9e-13 Score=101.26 Aligned_cols=105 Identities=22% Similarity=0.208 Sum_probs=84.5
Q ss_pred CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563 18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC 93 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~ 93 (152)
++++.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+. +|+.|++++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-TCCEEECTTSCCCEECSC-CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-CCCEEECCCCcCCccCcc-ccccCCEEECC
Confidence 67888888888888774 6788888888899888888773 455665 888889988888877755 78888888888
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
+|.+++++....+..+++|+.+++++|.+.+
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc
Confidence 8888876644467788888888888888875
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=2.3e-13 Score=103.20 Aligned_cols=105 Identities=21% Similarity=0.137 Sum_probs=49.4
Q ss_pred CCCCCcEEEccCCccccc-c-CCc-CCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CCCCCcccEEE
Q psy1563 16 GPNPNTKLSLSTNLIEKI-S-GLM-SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLY 91 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~-~-~l~-~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~ 91 (152)
.+++|+.|++++|.++.+ + .+. .+++|+.|++++|.++.++....+. +|+.|++++|.++.++. +..+++|+.|+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCC-CCCEEECCCCCCCCCCHhHcCCCCccEEE
Confidence 344444444444444432 1 222 3444455555555444444333333 55555555555554432 44445555555
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~ 123 (152)
+++|.++.+|. .+..++.|..+++++|++.
T Consensus 221 Ls~N~l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 221 LRNNKLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTSCCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred ecCCcCcccch--hhccCCCCCEEEcCCCCCc
Confidence 55555554432 2344555555555555554
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=7.3e-13 Score=94.95 Aligned_cols=129 Identities=18% Similarity=0.056 Sum_probs=91.2
Q ss_pred CCCCCcEEEccCCcccc-cc-CC--cCCccCcEEEcCCCccccccC-cccc----ccccceeeccccccCCccC--CCCC
Q psy1563 16 GPNPNTKLSLSTNLIEK-IS-GL--MSLKKLRILALGRNMIKTFTG-LEPL----GDCLEELWISYNFIEKTKG--IGSL 84 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~-~~-~l--~~~~~L~~l~l~~n~~~~~~~-~~~~----~~~L~~l~l~~n~~~~l~~--~~~~ 84 (152)
++++|++|++++|.++. ++ .+ ..+++|+.|++++|.++.+|. +..+ .++|+.|++++|.++.++. +..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 57889999999999874 45 44 788899999999998887652 2333 1388899999988887753 7788
Q ss_pred CcccEEEcCCCccCCc---ccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 85 KKLKVLYMCHNSVKEW---GELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 85 ~~L~~l~l~~n~i~~~---~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++|+.|++++|.+.+. +....+..+++|+.+++++|.+.+.+ .....++..+++|+.||.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---GVCSALAAARVQLQGLDL 235 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH---HHHHHHHHTTCCCSEEEC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH---HHHHHHHhcCCCCCEEEC
Confidence 8899999988886542 11112367788888888888887432 222334556777777754
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=4.2e-13 Score=101.76 Aligned_cols=120 Identities=23% Similarity=0.259 Sum_probs=80.6
Q ss_pred CCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCcccccc--Ccc-ccccccceeeccccccCCccCCCCCCcccEEE
Q psy1563 17 PNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFT--GLE-PLGDCLEELWISYNFIEKTKGIGSLKKLKVLY 91 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~--~~~-~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~ 91 (152)
++.|+.|++++|.++.+ + .+..+++|+.|++++|.++.++ .+. .+. +|+.|++++|.++.++....+++|+.|+
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 197 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCccccccccccCCCCCEEE
Confidence 45666666666666655 2 5566777777777777776542 333 343 7788888888777776656677888888
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+++|.+++++. .+..++.|+.+++++|.+.+.+.. +..+++|+.|+
T Consensus 198 Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~~-------l~~l~~L~~L~ 243 (487)
T 3oja_A 198 LSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEKA-------LRFSQNLEHFD 243 (487)
T ss_dssp CCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECTT-------CCCCTTCCEEE
T ss_pred CCCCCCCCCCH--hHcCCCCccEEEecCCcCcccchh-------hccCCCCCEEE
Confidence 88888877654 356677788888888888765431 34556666553
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=6.4e-13 Score=102.91 Aligned_cols=124 Identities=16% Similarity=0.249 Sum_probs=106.1
Q ss_pred CCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563 16 GPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV 89 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~ 89 (152)
.+..++.++++++.+..+| .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.++.++. ++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3578899999999999887 4678999999999999999875 566676 99999999999998864 689999999
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|++++|.++.++. ..+..+++|+.|++++|.+.+.++.. +..+++|+.|+.
T Consensus 128 L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~L 178 (597)
T 3oja_B 128 LVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDT------FQATTSLQNLQL 178 (597)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTT------TTTCTTCCEEEC
T ss_pred EEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCChhh------hhcCCcCcEEEC
Confidence 9999999998874 25678999999999999999877643 678888888864
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.41 E-value=7.2e-13 Score=100.72 Aligned_cols=105 Identities=25% Similarity=0.227 Sum_probs=86.2
Q ss_pred CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563 18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC 93 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~ 93 (152)
++++.|++++|.++.++ .+..+++|++|++++|.++.+ | .+..+. +|+.|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEecc
Confidence 78899999999988774 678888999999999988876 3 556666 899999999988888765 78899999999
Q ss_pred CCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563 94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
+|.+++++....++.+++|+.+++++|.+.+
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred CCccccccchhhhccCCcceEEEecCcccch
Confidence 9988875544467788889999999988875
No 93
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=2.4e-13 Score=97.55 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=38.6
Q ss_pred CCCCCCCcEEEccCCccc-ccc-CCcCCccCcEEEcCCCccc-ccc-CccccccccceeeccccccC-CccC-CCCCC-c
Q psy1563 14 FKGPNPNTKLSLSTNLIE-KIS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIE-KTKG-IGSLK-K 86 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~-~~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~-~l~~-~~~~~-~ 86 (152)
+.++++|++|++++|.++ .++ .+..+++|++|++++|.++ .+| .+..+. +|+.+++++|.++ .++. +..++ +
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhc
Confidence 344445555555555554 223 3444555555555555544 233 233333 5555555555554 2222 33343 4
Q ss_pred ccEEEcCCCccC
Q psy1563 87 LKVLYMCHNSVK 98 (152)
Q Consensus 87 L~~l~l~~n~i~ 98 (152)
|+.+++++|.++
T Consensus 176 L~~L~L~~N~l~ 187 (313)
T 1ogq_A 176 FTSMTISRNRLT 187 (313)
T ss_dssp CCEEECCSSEEE
T ss_pred CcEEECcCCeee
Confidence 455555555444
No 94
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=1.9e-12 Score=100.00 Aligned_cols=123 Identities=23% Similarity=0.227 Sum_probs=102.4
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+.++.|++++|.++.++ .+..+++|++|++++|.++.+. .+..+. +|+.|++++|.++.++. +..+++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcc-ccCeeeCCCCcccccChhhhcccccccEe
Confidence 347899999999999874 7899999999999999998773 466776 99999999999987733 7899999999
Q ss_pred EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++++|.+++++.. .+..+++|+.+++++|.+.+....+ +..+++|+.|+.
T Consensus 111 ~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~L 160 (606)
T 3t6q_A 111 FFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPK------GFPTEKLKVLDF 160 (606)
T ss_dssp ECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCT------TCCCTTCCEEEC
T ss_pred eccccCcccCCcc-hhccCCcccEEECCCCcccccCccc------ccCCcccCEEEc
Confidence 9999999987533 6788999999999999998753221 344788888764
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=2.5e-13 Score=87.30 Aligned_cols=105 Identities=24% Similarity=0.155 Sum_probs=87.9
Q ss_pred cCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccc-ccCcc-ccccccceeeccccccCCcc---CCCCCCcc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT-FTGLE-PLGDCLEELWISYNFIEKTK---GIGSLKKL 87 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~-~~~~~-~~~~~L~~l~l~~n~~~~l~---~~~~~~~L 87 (152)
.+..+++|+.|++++|.++.++.+..+++|+.+++++|.++. +|... .+. +|+.+++++|.++.++ .+..+++|
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred HHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 357889999999999999988878889999999999999987 66444 355 9999999999998863 37889999
Q ss_pred cEEEcCCCccCCcccc--cccCCCCCccEEEec
Q psy1563 88 KVLYMCHNSVKEWGEL--NKINDCPVLEDLVFC 118 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~--~~~~~l~~L~~l~l~ 118 (152)
+.+++++|.+++.+.. ..+..+++|+.+++.
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999999987641 246678888888764
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=1.6e-12 Score=104.34 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=53.9
Q ss_pred CCCCCCCcEEEccCCcc-ccc-c-CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCC-c-cC--CCCC
Q psy1563 14 FKGPNPNTKLSLSTNLI-EKI-S-GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEK-T-KG--IGSL 84 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l-~~~-~-~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~-l-~~--~~~~ 84 (152)
+.++++|+.|++++|.. ..+ + .+..+++|++|++++|.++.+ | .+..+. +|+.|++++|.+++ + +. +..+
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc-ccCEeeCcCCCCCcccccCcccccc
Confidence 44455555555555422 222 2 344555555555555555444 2 333443 55555555555543 1 11 4455
Q ss_pred CcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 85 KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 85 ~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
++|++|++++|.+++......+..+++|+.|++++|.+.+.
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 55555555555555443222344555555555555555443
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=1.3e-12 Score=102.14 Aligned_cols=112 Identities=24% Similarity=0.240 Sum_probs=68.6
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L 87 (152)
+.++++|+.|++++|.++.++ .+..+++|++|++++|.++.++. +..+. +|+.+++++|.++.++. +..+++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCC
Confidence 455566666666666665542 34556666666666666666552 44554 67777777666666542 5666677
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
++|++++|.+++.+. ..+..+++|+.+++++|.+.+.++
T Consensus 124 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCH
Confidence 777777776665432 245566677777777776665543
No 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=1.1e-12 Score=94.03 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=79.5
Q ss_pred cCCCCCCCcEEEccCCccccc---c-C--CcCCccCcEEEcCCCccccccCc-----cccccccceeeccccccCCcc--
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKI---S-G--LMSLKKLRILALGRNMIKTFTGL-----EPLGDCLEELWISYNFIEKTK-- 79 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~---~-~--l~~~~~L~~l~l~~n~~~~~~~~-----~~~~~~L~~l~l~~n~~~~l~-- 79 (152)
.+.++++|+.|++++|.+... + . +..+++|+.|++++|.++.++.+ ..+. +|+.+++++|.++..+
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECTTSCCCSSCCC
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECCCCcCCcccch
Confidence 455667777777777765431 1 2 25667777777777777643321 1233 7888888888877643
Q ss_pred -CCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 80 -GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 80 -~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
.+..+++|+.|++++|.++.++. .+. ++|+.+++++|.+++.+. +..+++|+.|+
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~Ls~N~l~~~p~--------~~~l~~L~~L~ 302 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLDLSYNRLDRNPS--------PDELPQVGNLS 302 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEECCSSCCCSCCC--------TTTSCEEEEEE
T ss_pred hhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEECCCCCCCCChh--------HhhCCCCCEEe
Confidence 24456788888888888887664 232 678888888888877643 46677777764
No 99
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.39 E-value=2.6e-12 Score=92.59 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=42.0
Q ss_pred ccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEE
Q psy1563 40 KKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDL 115 (152)
Q Consensus 40 ~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l 115 (152)
++|+.+++++|.++.++ .+..+. +|+.+++++|.++.++. +..+++|+.|++++|.++.++. .+..+++|+.+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~l~~l~~L~~L 268 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVV 268 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT--TTTTCSSCCEE
T ss_pred ccCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh--hhccCCCcCEE
Confidence 34444444444444332 233333 55555555555554432 4455555555665555555443 34455556666
Q ss_pred EecCCCCcccc
Q psy1563 116 VFCGNPIVENL 126 (152)
Q Consensus 116 ~l~~n~~~~~~ 126 (152)
++++|++++.+
T Consensus 269 ~l~~N~i~~~~ 279 (330)
T 1xku_A 269 YLHNNNISAIG 279 (330)
T ss_dssp ECCSSCCCCCC
T ss_pred ECCCCcCCccC
Confidence 66666555443
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=94.08 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=44.1
Q ss_pred ccceeeccccccCCc-cC-CCCC---CcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHh
Q psy1563 64 CLEELWISYNFIEKT-KG-IGSL---KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138 (152)
Q Consensus 64 ~L~~l~l~~n~~~~l-~~-~~~~---~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 138 (152)
+|+.|++++|.++.. |. +..+ ++|++|++++|.++.+|. .+ .++|+.+++++|.+++.+. ...
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~~--------~~~ 292 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAPQ--------PDE 292 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCCC--------TTS
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCch--------hhh
Confidence 677777777776655 32 3333 577777777777776653 22 2567777777777776432 345
Q ss_pred CCCccccc
Q psy1563 139 LPRLKKLD 146 (152)
Q Consensus 139 l~~L~~l~ 146 (152)
+++|+.|+
T Consensus 293 l~~L~~L~ 300 (310)
T 4glp_A 293 LPEVDNLT 300 (310)
T ss_dssp CCCCSCEE
T ss_pred CCCccEEE
Confidence 66666653
No 101
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.38 E-value=4.5e-12 Score=101.69 Aligned_cols=135 Identities=20% Similarity=0.129 Sum_probs=105.1
Q ss_pred hhhhhhhccCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCc-cccc-c-CccccccccceeeccccccCCc-
Q psy1563 5 EREKENLYKFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNM-IKTF-T-GLEPLGDCLEELWISYNFIEKT- 78 (152)
Q Consensus 5 ~~~~~~~~~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~-~~~~-~-~~~~~~~~L~~l~l~~n~~~~l- 78 (152)
++.++.+.. -+++++.|++++|.++.+. .+..+++|+.|++++|. +..+ + .+..+. +|+.|++++|.++.+
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCEEECTTCCCCEEC
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-CCCEEECCCCcCcccC
Confidence 344555554 4678999999999998773 78899999999999994 4455 3 566776 999999999999877
Q ss_pred cC-CCCCCcccEEEcCCCccCC-cccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 79 KG-IGSLKKLKVLYMCHNSVKE-WGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 79 ~~-~~~~~~L~~l~l~~n~i~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+. +..+++|++|++++|.+++ .+....+..+++|+.|++++|.+.+..+.+ .+..+++|+.|+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-----~~~~L~~L~~L~L 155 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP-----SFGKLNSLKSIDF 155 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG-----GGGTCSSCCEEEE
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch-----hHhhCCCCCEEEC
Confidence 33 8899999999999999986 333334788999999999999998764321 2677888887753
No 102
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.37 E-value=3.2e-12 Score=99.73 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=47.1
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC-ccccc-------cccceeeccccccCCccC-CC--C
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG-LEPLG-------DCLEELWISYNFIEKTKG-IG--S 83 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~-~~~~~-------~~L~~l~l~~n~~~~l~~-~~--~ 83 (152)
+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+|. ..... ++|+.|++++|.++.+|. +. .
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 334555555555555444 12334555555555555554441 11110 045555555555554443 32 5
Q ss_pred CCcccEEEcCCCccCCcccccccCCCCCccEEEe
Q psy1563 84 LKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVF 117 (152)
Q Consensus 84 ~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l 117 (152)
+++|+.|++++|.++.+|. .+..++.|+.+++
T Consensus 512 l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~L 543 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKFPT--QPLNSSTLKGFGI 543 (636)
T ss_dssp CTTCCEEECCSSCCSSCCC--GGGGCSSCCEEEC
T ss_pred CCCcCEEECCCCCCCCcCh--hhhcCCCCCEEEC
Confidence 5555555555555555432 3344555555555
No 103
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.37 E-value=3.4e-12 Score=97.02 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=26.9
Q ss_pred ccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 64 CLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 64 ~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
+|+.+++++|.++.+|. +..+++|+.|++++|.++.++.. .+..+++|+.+++++|++...
T Consensus 422 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCBCCC
T ss_pred cCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH-HhccCCcccEEECcCCCCccc
Confidence 44444444444444432 33444444444444444444321 233444445555555544443
No 104
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.37 E-value=1.2e-12 Score=102.10 Aligned_cols=126 Identities=15% Similarity=0.125 Sum_probs=67.0
Q ss_pred CCCCCCCcEEEccCCccc-cccCCcCCccCcEEEcCCCcccccc-Cccccccc-cceeeccccccCCccC-CCC--CCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIE-KISGLMSLKKLRILALGRNMIKTFT-GLEPLGDC-LEELWISYNFIEKTKG-IGS--LKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~-~~~~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~-L~~l~l~~n~~~~l~~-~~~--~~~L 87 (152)
+.++++|+.|++++|.++ .+|.+..+++|+.|++++|.++.+| .+..+. + |+.+++++|.++.+|. +.. +++|
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~-~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT-EQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEEC-TTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhc-ccCcEEEccCCcCcccchhhhhcccCcc
Confidence 444555555555555554 4444444555555555555555444 333443 4 6666666666655543 222 2356
Q ss_pred cEEEcCCCccCCcccccccC-------CCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 88 KVLYMCHNSVKEWGELNKIN-------DCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~-------~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+.+++++|.++.... ..+. .+++|+.+++++|.+...+.. ++..+++|+.|+.
T Consensus 405 ~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~------~~~~l~~L~~L~L 464 (636)
T 4eco_A 405 SAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFPKE------LFSTGSPLSSINL 464 (636)
T ss_dssp EEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH------HHHTTCCCSEEEC
T ss_pred CEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcCCHH------HHccCCCCCEEEC
Confidence 666666666654321 1233 455677777777777754432 2445777776654
No 105
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.36 E-value=3.2e-12 Score=101.59 Aligned_cols=127 Identities=24% Similarity=0.197 Sum_probs=82.2
Q ss_pred cCCCCCCCcEEEccCCcccc-cc-CCcCCccCcEEEcCCCccc-ccc-CccccccccceeeccccccCCc-cC-CCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEK-IS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIEKT-KG-IGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~-~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~ 86 (152)
.+.++++|+.|++++|.++. +| .+..+++|+.+++++|.++ .+| .+..+. +|+.+++++|.+++. |. +..+++
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCC
Confidence 34556667777777776653 33 5666667777777777665 334 344444 777777777777643 32 667777
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
|+.|++++|.+++.. +..++.+++|+.+++++|.+.+..+.. +..+++|+.||.
T Consensus 492 L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~------l~~l~~L~~L~L 545 (768)
T 3rgz_A 492 LNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAE------LGDCRSLIWLDL 545 (768)
T ss_dssp CCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCEEECCGG------GGGCTTCCEEEC
T ss_pred CCEEEccCCccCCcC-ChHHhcCCCCCEEECCCCcccCcCCHH------HcCCCCCCEEEC
Confidence 777777777777432 225666777778888888777655543 566777776654
No 106
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.36 E-value=6.1e-12 Score=90.72 Aligned_cols=84 Identities=30% Similarity=0.373 Sum_probs=47.2
Q ss_pred cCCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--CCCCCccc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLK 88 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~ 88 (152)
.+.++++|+.|++++|.++.+ + .+..+++|+.|++++|.++.+|.... ++|+.+++++|.++.++. +..+++|+
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 355666666666666666655 2 45566666666666666665542211 255556665555555533 44555555
Q ss_pred EEEcCCCccC
Q psy1563 89 VLYMCHNSVK 98 (152)
Q Consensus 89 ~l~l~~n~i~ 98 (152)
.|++++|.++
T Consensus 151 ~L~l~~n~l~ 160 (332)
T 2ft3_A 151 CIEMGGNPLE 160 (332)
T ss_dssp EEECCSCCCB
T ss_pred EEECCCCccc
Confidence 5555555543
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=8.6e-13 Score=101.77 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=92.1
Q ss_pred hhhhhhccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCc--cC-C
Q psy1563 6 REKENLYKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT--KG-I 81 (152)
Q Consensus 6 ~~~~~~~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l--~~-~ 81 (152)
..++.+..+..+++|+.|++++|.++.+| .+..+++|+.|++++|.++.+|.+..+. +|+.|++++|.++.+ |. +
T Consensus 451 n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~-~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 451 KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP-RLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp SCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCCSSSTTGGG
T ss_pred CCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCC-CCcEEECCCCCCCCCCCcHHH
Confidence 34555666888999999999999999888 7889999999999999999999777787 999999999999988 43 7
Q ss_pred CCCCcccEEEcCCCccCCccccc-c-cCCCCCccEEE
Q psy1563 82 GSLKKLKVLYMCHNSVKEWGELN-K-INDCPVLEDLV 116 (152)
Q Consensus 82 ~~~~~L~~l~l~~n~i~~~~~~~-~-~~~l~~L~~l~ 116 (152)
..+++|+.|++++|.+++.+... . ...+++|+.|+
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 89999999999999999876421 1 22377787775
No 108
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=6.4e-12 Score=90.49 Aligned_cols=104 Identities=26% Similarity=0.359 Sum_probs=59.9
Q ss_pred CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-CCCCCcccEEEc
Q psy1563 18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYM 92 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l 92 (152)
++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.+++++|.++.+|. +..+++|+.+++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence 34555555555555442 4556666666777666666554 234444 66666776666666643 556666666676
Q ss_pred CCCccCCcccccccC------CCCCccEEEecCCCCc
Q psy1563 93 CHNSVKEWGELNKIN------DCPVLEDLVFCGNPIV 123 (152)
Q Consensus 93 ~~n~i~~~~~~~~~~------~l~~L~~l~l~~n~~~ 123 (152)
++|.+++++.. .+. ..+.+..+++.+|++.
T Consensus 271 ~~N~i~~~~~~-~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 271 HNNNISAIGSN-DFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCCCCCTT-SSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCcCCccChh-hcCCcccccccccccceEeecCccc
Confidence 66666665432 221 1345666666666664
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.35 E-value=9.6e-12 Score=93.57 Aligned_cols=80 Identities=26% Similarity=0.318 Sum_probs=44.7
Q ss_pred CCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCcc
Q psy1563 18 NPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSV 97 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i 97 (152)
++|++|++++|.++.+|.+..+++|+++++++|.++.+|... ++|+.+++++|.++.++.+..+++|+.+++++|.+
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence 355666666666655555555666666666666655544321 25566666666555555555555555555555555
Q ss_pred CCc
Q psy1563 98 KEW 100 (152)
Q Consensus 98 ~~~ 100 (152)
+++
T Consensus 208 ~~l 210 (454)
T 1jl5_A 208 KKL 210 (454)
T ss_dssp SSC
T ss_pred CcC
Confidence 543
No 110
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.35 E-value=3e-12 Score=92.32 Aligned_cols=122 Identities=24% Similarity=0.316 Sum_probs=84.7
Q ss_pred CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-CCCCCcccEEEc
Q psy1563 18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYM 92 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l 92 (152)
++|++|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.+++++|.++.+|. +..+++|+.+++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCeecChhhhcCccCCEEEC
Confidence 46777777777777654 5677788888888888887665 344554 88888888888887765 677788888888
Q ss_pred CCCccCCcccccccCC------CCCccEEEecCCCCc--cccchhHHHHHHHHhCCCcccccC
Q psy1563 93 CHNSVKEWGELNKIND------CPVLEDLVFCGNPIV--ENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 93 ~~n~i~~~~~~~~~~~------l~~L~~l~l~~n~~~--~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++|.++.++.. .+.. ...++.+++.+|++. +..+. .+..+++|+.++.
T Consensus 272 ~~N~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~------~~~~l~~L~~l~l 327 (332)
T 2ft3_A 272 HTNNITKVGVN-DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA------TFRCVTDRLAIQF 327 (332)
T ss_dssp CSSCCCBCCTT-SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG------GGTTBCCSTTEEC
T ss_pred CCCCCCccChh-HccccccccccccccceEeecCcccccccCcc------cccccchhhhhhc
Confidence 88888876542 2222 356788888888876 33322 1456677776654
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=7.3e-12 Score=100.72 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=45.8
Q ss_pred CCCCCCCcEEEccCCccccccC---CcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CCCCCc-cc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IGSLKK-LK 88 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~~---l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~-L~ 88 (152)
+..+++|+.|++++|.++.+|. +..+++|+.|++++|.++.+|.+..+. +|+.|++++|.++.+|. +..+++ |+
T Consensus 544 ~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~-~L~~L~Ls~N~l~~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNV-KLTDLKLDYNQIEEIPEDFCAFTDQVE 622 (876)
T ss_dssp TTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTS-EESEEECCSSCCSCCCTTSCEECTTCC
T ss_pred ccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCC-cceEEECcCCccccchHHHhhccccCC
Confidence 3344455555555555554443 455555555555555555555444443 55555555555554442 444454 55
Q ss_pred EEEcCCCccCCcc
Q psy1563 89 VLYMCHNSVKEWG 101 (152)
Q Consensus 89 ~l~l~~n~i~~~~ 101 (152)
.|++++|.++.+|
T Consensus 623 ~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 623 GLGFSHNKLKYIP 635 (876)
T ss_dssp EEECCSSCCCSCC
T ss_pred EEECcCCCCCcCc
Confidence 5555555555443
No 112
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=1.3e-11 Score=94.85 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=31.5
Q ss_pred ccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563 64 CLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL 126 (152)
Q Consensus 64 ~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 126 (152)
+|+.+++++|.++.+|. +..+++|+.|++++|.++.++.. .+..+++|+.+++++|++....
T Consensus 451 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG-VFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT-STTTCTTCCCEECCSCCBCCCH
T ss_pred cCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH-HHhcCCCCCEEEecCCCcCCCc
Confidence 45555555555554433 33555555555555555554431 2444555555555555555443
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=8.9e-12 Score=96.13 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=39.7
Q ss_pred CCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcc-------cEEE
Q psy1563 19 PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL-------KVLY 91 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L-------~~l~ 91 (152)
+|+.|++++|.++.+|. .+++|+.|++++|.++.+|.+. ++|+.|++++|.++.+|.+.. +| +.|+
T Consensus 141 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~---~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP---ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFR 213 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCC----------CCEEEE
T ss_pred cccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh---CCCCEEECcCCCCCchhhHHH--hhhcccccceEEe
Confidence 34444444444433332 2334444444444444433311 244444444444444433211 33 4445
Q ss_pred cCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
+++|.|+.+|. .+..+++|+.+++++|++++
T Consensus 214 Ls~N~l~~lp~--~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 214 CRENRITHIPE--NILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCSSCCCCCCG--GGGGSCTTEEEECCSSSCCH
T ss_pred cCCCcceecCH--HHhcCCCCCEEEeeCCcCCC
Confidence 55555444432 22334455555555555544
No 114
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=2.6e-12 Score=91.97 Aligned_cols=127 Identities=13% Similarity=-0.034 Sum_probs=77.6
Q ss_pred CCCCcEEEccCCccccc-c-CC--cCCccCcEEEcCCCccccc-c-----CccccccccceeeccccccCCccC--CCCC
Q psy1563 17 PNPNTKLSLSTNLIEKI-S-GL--MSLKKLRILALGRNMIKTF-T-----GLEPLGDCLEELWISYNFIEKTKG--IGSL 84 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~-~-~l--~~~~~L~~l~l~~n~~~~~-~-----~~~~~~~~L~~l~l~~n~~~~l~~--~~~~ 84 (152)
++.|++|++++|.+... + .+ ..+++|++|++++|.++.. + .+..+. +|+.|++++|.++.++. +..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhhHHHhccC
Confidence 45578888888877644 3 44 6677788888888777642 1 112233 77777777777766643 5677
Q ss_pred CcccEEEcCCCccCC---cccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 85 KKLKVLYMCHNSVKE---WGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 85 ~~L~~l~l~~n~i~~---~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++|++|++++|.+.. ++....+..+++|+.|++++|.++..+ .....++..+++|+.||.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT---GVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH---HHHHHHHHHTCCCSSEEC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH---HHHHHHHhcCCCCCEEEC
Confidence 777777777777653 222223345667777777777775432 111223456666666643
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=3e-12 Score=101.31 Aligned_cols=103 Identities=20% Similarity=0.216 Sum_probs=86.6
Q ss_pred CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcccccccCCCCCc
Q psy1563 35 GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVL 112 (152)
Q Consensus 35 ~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L 112 (152)
.+..++.|+.|++++|.+..++ .+..+. +|+.|+|++|.++.+|. +..+++|+.|++++|.|+.+|. .+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYD-FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA--ELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCC-SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS--SGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCC-CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh--hhcCCCCC
Confidence 5678899999999999999887 566666 99999999999998875 8899999999999999998764 67889999
Q ss_pred cEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 113 EDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 113 ~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+.|++++|.+...+.. ++.+++|+.|+.
T Consensus 296 ~~L~L~~N~l~~lp~~-------~~~l~~L~~L~L 323 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWE-------FGNLCNLQFLGV 323 (727)
T ss_dssp SEEECCSSCCCCCCSS-------TTSCTTCCCEEC
T ss_pred CEEECCCCCCCccChh-------hhcCCCccEEeC
Confidence 9999999999866542 678888888854
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.31 E-value=2.7e-11 Score=91.14 Aligned_cols=109 Identities=19% Similarity=0.290 Sum_probs=69.6
Q ss_pred hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcc
Q psy1563 8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL 87 (152)
Q Consensus 8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L 87 (152)
++.+..+.++++|++|++++|+++.+|.. .++|+++++++|.++.+|.+..+. +|+.+++++|.++.++.. .++|
T Consensus 143 l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~-~L~~L~l~~N~l~~l~~~--~~~L 217 (454)
T 1jl5_A 143 LEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLP-FLTAIYADNNSLKKLPDL--PLSL 217 (454)
T ss_dssp CSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCT-TCCEEECCSSCCSSCCCC--CTTC
T ss_pred CCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCC-CCCEEECCCCcCCcCCCC--cCcc
Confidence 34455677888888888888888776632 247777777777777766665555 666677766666655432 2456
Q ss_pred cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563 88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
+.|++++|.++.++. +..+++|+.+++++|.+.+
T Consensus 218 ~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 218 ESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSS
T ss_pred cEEECcCCcCCcccc---cCCCCCCCEEECCCCcCCc
Confidence 666666666655442 4455556666666665554
No 117
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.30 E-value=1.2e-11 Score=98.36 Aligned_cols=101 Identities=26% Similarity=0.297 Sum_probs=56.4
Q ss_pred CCccCcEEEcCCCcccccc--C---ccccccccceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCc
Q psy1563 38 SLKKLRILALGRNMIKTFT--G---LEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVL 112 (152)
Q Consensus 38 ~~~~L~~l~l~~n~~~~~~--~---~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L 112 (152)
.+++|++|++++|.++... . +..+. +|+.+++++|.++.......+++|++|++++|.++.... .+..+++|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L 225 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCG-ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSAL 225 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCT-TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCC--BCTTCCSC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCC-CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCc--ccccCCCC
Confidence 4444444444444444322 1 22333 555555555555444334566777777777777665332 25667777
Q ss_pred cEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 113 EDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 113 ~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+.+++++|.+.+..+. .+..+++|+.|+.
T Consensus 226 ~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L 254 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSR------AISTCTELKLLNI 254 (768)
T ss_dssp CEEECCSSCCCSCHHH------HTTTCSSCCEEEC
T ss_pred CEEECcCCcCCCcccH------HHhcCCCCCEEEC
Confidence 7777777777655432 2566667766643
No 118
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=1.5e-11 Score=98.86 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=42.8
Q ss_pred CCcEEEccCCcccccc-C-CcCCccCcEEEcCCCccccccC-ccccc-------cccceeeccccccCCccC-CC--CCC
Q psy1563 19 PNTKLSLSTNLIEKIS-G-LMSLKKLRILALGRNMIKTFTG-LEPLG-------DCLEELWISYNFIEKTKG-IG--SLK 85 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~-~-l~~~~~L~~l~l~~n~~~~~~~-~~~~~-------~~L~~l~l~~n~~~~l~~-~~--~~~ 85 (152)
+|+.|++++|.++.+| . +..+++|+.|++++|.++.+|. +.... ++|+.|++++|.++.+|. +. .++
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 4444444444444443 1 2234445555555554444431 11100 145555555555544432 22 445
Q ss_pred cccEEEcCCCccCCcccccccCCCCCccEEEecC
Q psy1563 86 KLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCG 119 (152)
Q Consensus 86 ~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~ 119 (152)
+|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 754 ~L~~L~Ls~N~L~~lp~--~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSFPT--QPLNSSQLKAFGIRH 785 (876)
T ss_dssp TCCEEECCSSCCSSCCC--GGGGCTTCCEEECCC
T ss_pred CcCEEEeCCCCCCccch--hhhcCCCCCEEECCC
Confidence 55555555555544332 233444444444433
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=1e-11 Score=95.85 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=89.9
Q ss_pred CCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCccC
Q psy1563 19 PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVK 98 (152)
Q Consensus 19 ~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~ 98 (152)
+|+.|++++|.++.+|. .+++|+.|++++|.++.+|. .+. +|+.|++++|.++.+|.+. ++|+.|++++|.|+
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~-~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPT-SLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE 193 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCT-TCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCC-CcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC
Confidence 88899999999888876 67899999999999998876 344 9999999999999987744 89999999999999
Q ss_pred CcccccccCCCCCc-------cEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 99 EWGELNKINDCPVL-------EDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 99 ~~~~~~~~~~l~~L-------~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
.+|. +.. +| +.|++++|.++..+.. +..+++|+.|+.
T Consensus 194 ~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-------l~~l~~L~~L~L 237 (571)
T 3cvr_A 194 SLPA---VPV--RNHHSEETEIFFRCRENRITHIPEN-------ILSLDPTCTIIL 237 (571)
T ss_dssp SCCC---CC----------CCEEEECCSSCCCCCCGG-------GGGSCTTEEEEC
T ss_pred chhh---HHH--hhhcccccceEEecCCCcceecCHH-------HhcCCCCCEEEe
Confidence 8875 332 56 9999999999976642 456888887754
No 120
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.28 E-value=1.7e-11 Score=86.11 Aligned_cols=113 Identities=28% Similarity=0.354 Sum_probs=85.9
Q ss_pred CCccCcE--EEcCCCccccccCcc----ccccccceeeccccccCCccCC----CCCCcccEEEcCCCccCCcccccccC
Q psy1563 38 SLKKLRI--LALGRNMIKTFTGLE----PLGDCLEELWISYNFIEKTKGI----GSLKKLKVLYMCHNSVKEWGELNKIN 107 (152)
Q Consensus 38 ~~~~L~~--l~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~~~~l~~~----~~~~~L~~l~l~~n~i~~~~~~~~~~ 107 (152)
..+.|.. ++++.|....++... ...++|+.|+|++|.++.++.+ ..+++|+.|+|++|.|+++..+..+.
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~ 218 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 218 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc
Confidence 3344443 555666544433211 1224899999999999987643 47899999999999999987666666
Q ss_pred CCCCccEEEecCCCCccccc-hhHHHHHHHHhCCCcccccCcccC
Q psy1563 108 DCPVLEDLVFCGNPIVENLE-ESAYRVEIKKRLPRLKKLDGEVLP 151 (152)
Q Consensus 108 ~l~~L~~l~l~~n~~~~~~~-~~~~~~~~~~~l~~L~~l~~~~~~ 151 (152)
.+ .|+.|++.+|++++..+ .+.|+..++..+|+|+.||+.+|+
T Consensus 219 ~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 219 GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP 262 (267)
T ss_dssp TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCC
Confidence 66 89999999999987544 347899999999999999999886
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.23 E-value=9.6e-11 Score=91.29 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=30.9
Q ss_pred ccceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563 64 CLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 64 ~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 125 (152)
+|+.|++++|.++.+|. .+++|+.|++++|.++.+|. .+..+++|+.+++++|++.+.
T Consensus 242 ~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~--~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 242 ELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCG--GGGGSCTTCEEECCSCCCCHH
T ss_pred cCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCH--HHhhccccCEEEecCCCCCCc
Confidence 45555555555554443 34555555555555555442 344555566666666665543
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=9.8e-11 Score=77.28 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=74.1
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+.++.|++++|.++.++ .+..+++|+.|++++|.++.++. +..+. +|+.|++++|.++.++. +..+++|+.|
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT-QLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc-hhhEEECCCCccceeCHHHhccccCCCEE
Confidence 478999999999999884 68899999999999999999873 35666 99999999999998865 7889999999
Q ss_pred EcCCCccCCcc
Q psy1563 91 YMCHNSVKEWG 101 (152)
Q Consensus 91 ~l~~n~i~~~~ 101 (152)
++++|.+...+
T Consensus 111 ~L~~N~~~c~~ 121 (174)
T 2r9u_A 111 YLYNNPWDCEC 121 (174)
T ss_dssp ECCSSCBCTTB
T ss_pred EeCCCCccccc
Confidence 99999998655
No 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=1.1e-10 Score=76.71 Aligned_cols=84 Identities=24% Similarity=0.310 Sum_probs=73.7
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL 90 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l 90 (152)
.+.++.|++++|.++.++ .+..+++|++|++++|.++.++ . +..+. +|+.|++++|.++.++. +..+++|+.|
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT-QLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC-CCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence 478999999999999884 6889999999999999999887 3 45665 99999999999998864 7889999999
Q ss_pred EcCCCccCCcc
Q psy1563 91 YMCHNSVKEWG 101 (152)
Q Consensus 91 ~l~~n~i~~~~ 101 (152)
++++|.++...
T Consensus 108 ~L~~N~~~c~c 118 (170)
T 3g39_A 108 WLLNNPWDCAC 118 (170)
T ss_dssp ECCSSCBCTTB
T ss_pred EeCCCCCCCCc
Confidence 99999988654
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=2.2e-10 Score=82.97 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=70.7
Q ss_pred EEEccCC-ccccccCCcCCccCcEEEcCC-Ccccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcCCC
Q psy1563 22 KLSLSTN-LIEKISGLMSLKKLRILALGR-NMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHN 95 (152)
Q Consensus 22 ~L~l~~n-~l~~~~~l~~~~~L~~l~l~~-n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n 95 (152)
.++.+++ .++.+|.+..+++|+.|++++ |.++.++ .+..+. +|+.|+|++|.++.++. +..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 677776666677778888875 7777665 355565 78888888887777643 567778888888888
Q ss_pred ccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563 96 SVKEWGELNKINDCPVLEDLVFCGNPIVENLE 127 (152)
Q Consensus 96 ~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 127 (152)
.++.++.. .+..+. |+.|++.+|++.....
T Consensus 91 ~l~~~~~~-~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWK-TVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCST-TTCSCC-CCEEECCSSCCCCCGG
T ss_pred ccceeCHH-HcccCC-ceEEEeeCCCccCCCc
Confidence 87776632 333344 7788888887775543
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.17 E-value=1.1e-10 Score=90.98 Aligned_cols=112 Identities=22% Similarity=0.141 Sum_probs=89.6
Q ss_pred CCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCc
Q psy1563 17 PNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNS 96 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~ 96 (152)
+++|+.|++++|.++.++.. .++|+.|++++|.++.++.. . ++|+.|++++|.++.++ ..+++|+.|++++|.
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~--~-~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--P-SGLKELIVSGNRLTSLP--VLPSELKELMVSGNR 252 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC--C-TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSC
T ss_pred CCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC--C-CCCCEEEccCCccCcCC--CCCCcCcEEECCCCC
Confidence 47788888888888777632 46788888888888877643 2 48999999999999887 456899999999999
Q ss_pred cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 97 VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 97 i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
++.++. .+++|+.|++++|.+...+. . +..+++|+.|+.
T Consensus 253 L~~lp~-----~~~~L~~L~Ls~N~L~~lp~-~------l~~l~~L~~L~L 291 (622)
T 3g06_A 253 LTSLPM-----LPSGLLSLSVYRNQLTRLPE-S------LIHLSSETTVNL 291 (622)
T ss_dssp CSCCCC-----CCTTCCEEECCSSCCCSCCG-G------GGGSCTTCEEEC
T ss_pred CCcCCc-----ccccCcEEeCCCCCCCcCCH-H------HhhccccCEEEe
Confidence 998774 56789999999999996643 2 678888887754
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=7.3e-14 Score=94.04 Aligned_cols=119 Identities=26% Similarity=0.260 Sum_probs=92.4
Q ss_pred CcEEEccCC--cccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CCCCCcccEEEcCCC
Q psy1563 20 NTKLSLSTN--LIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYMCHN 95 (152)
Q Consensus 20 l~~L~l~~n--~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n 95 (152)
+....+.+. .++.++ .+..+++|+.|++++|.++.+|.+..+. +|+.+++++|.++.++. +..+++|+.|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 444444433 334444 5778899999999999999888666676 99999999999998876 456689999999999
Q ss_pred ccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 96 SVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 96 ~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
.+++++ .+..+++|+.+++++|.+...+.. ..+..+++|+.|+.
T Consensus 104 ~l~~l~---~~~~l~~L~~L~l~~N~i~~~~~~-----~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 104 QIASLS---GIEKLVNLRVLYMSNNKITNWGEI-----DKLAALDKLEDLLL 147 (198)
T ss_dssp ECCCHH---HHHHHHHSSEEEESEEECCCHHHH-----HHHTTTTTCSEEEE
T ss_pred cCCcCC---ccccCCCCCEEECCCCcCCchhHH-----HHHhcCCCCCEEEe
Confidence 999876 456788999999999999864321 13677888887753
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.15 E-value=1.7e-10 Score=83.85 Aligned_cols=127 Identities=16% Similarity=0.103 Sum_probs=72.0
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCC-Ccccccc--CccccccccceeeccccccCCccC-CCCCCcc
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGR-NMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKL 87 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~-n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L 87 (152)
+..+++|+.|++++|.++.++ .+....++..+++.+ +.+..++ .+......++.+++++|.++.++. .....++
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 344444555555544444433 122222333344322 2333333 122222257778888888887754 4455678
Q ss_pred cEEEcC-CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 88 KVLYMC-HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 88 ~~l~l~-~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
+.+.+. +|.++.++. ..+..+++|+.+++++|.++..++.. +..+++|+.++.
T Consensus 180 ~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~~lp~~~------~~~L~~L~~l~~ 233 (350)
T 4ay9_X 180 DELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSLPSYG------LENLKKLRARST 233 (350)
T ss_dssp EEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCCCCCSSS------CTTCCEEECTTC
T ss_pred hHHhhccCCcccCCCH-HHhccCcccchhhcCCCCcCccChhh------hccchHhhhccC
Confidence 888876 467887764 35677888999999999888766532 344555554443
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.7e-10 Score=83.53 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=78.2
Q ss_pred hhhhhccCCCCCCCcEEEccC-Ccccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-
Q psy1563 7 EKENLYKFKGPNPNTKLSLST-NLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG- 80 (152)
Q Consensus 7 ~~~~~~~~~~l~~l~~L~l~~-n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~- 80 (152)
.++.+..+..+++|+.|++++ |.++.++ .+..+++|+.|++++|.++.++ .+..+. +|+.|+|++|.++.++.
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECCSSCCSCCCST
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc-CCCEEeCCCCccceeCHH
Confidence 455565578888999999996 9999886 5889999999999999999886 346676 99999999999998864
Q ss_pred -CCCCCcccEEEcCCCccCCcccc
Q psy1563 81 -IGSLKKLKVLYMCHNSVKEWGEL 103 (152)
Q Consensus 81 -~~~~~~L~~l~l~~n~i~~~~~~ 103 (152)
+..+. |+.|++.+|.+.....+
T Consensus 99 ~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp TTCSCC-CCEEECCSSCCCCCGGG
T ss_pred HcccCC-ceEEEeeCCCccCCCcc
Confidence 44444 99999999999864443
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.09 E-value=2e-11 Score=87.87 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=5.9
Q ss_pred CCCCcEEEccCCcc
Q psy1563 17 PNPNTKLSLSTNLI 30 (152)
Q Consensus 17 l~~l~~L~l~~n~l 30 (152)
+++|+.|++++|.+
T Consensus 92 ~~~L~~L~L~~~~l 105 (336)
T 2ast_B 92 PFRVQHMDLSNSVI 105 (336)
T ss_dssp CBCCCEEECTTCEE
T ss_pred CCCCCEEEccCCCc
Confidence 34444444444443
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.05 E-value=1.5e-10 Score=84.47 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=37.9
Q ss_pred CCCCC-CCcEEEccCCcccccc--CCcCC-----ccCcEEEcCCCcccccc--C----ccccccccceeeccccccCCcc
Q psy1563 14 FKGPN-PNTKLSLSTNLIEKIS--GLMSL-----KKLRILALGRNMIKTFT--G----LEPLGDCLEELWISYNFIEKTK 79 (152)
Q Consensus 14 ~~~l~-~l~~L~l~~n~l~~~~--~l~~~-----~~L~~l~l~~n~~~~~~--~----~~~~~~~L~~l~l~~n~~~~l~ 79 (152)
+..++ +|++|++++|.++... .+..+ ++|+.|++++|.++..+ . +....++|+.|++++|.++..+
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 33444 5555555555554431 22221 55555555555554322 1 1111025555555555554332
Q ss_pred C------CCC-CCcccEEEcCCCccC
Q psy1563 80 G------IGS-LKKLKVLYMCHNSVK 98 (152)
Q Consensus 80 ~------~~~-~~~L~~l~l~~n~i~ 98 (152)
. +.. .++|+.|++++|.++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCC
Confidence 1 112 235555555555554
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.04 E-value=4.5e-11 Score=87.83 Aligned_cols=127 Identities=19% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCCcEEEccCCccc--ccc----CCcCCccCcEEEcCCCcccc------cc-CccccccccceeeccccccC-----Ccc
Q psy1563 18 NPNTKLSLSTNLIE--KIS----GLMSLKKLRILALGRNMIKT------FT-GLEPLGDCLEELWISYNFIE-----KTK 79 (152)
Q Consensus 18 ~~l~~L~l~~n~l~--~~~----~l~~~~~L~~l~l~~n~~~~------~~-~~~~~~~~L~~l~l~~n~~~-----~l~ 79 (152)
++|+.|++++|.++ .++ .+..+++|++|++++|.++. ++ .+..+. +|+.|++++|.++ .++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHH
Confidence 56777777777664 222 33455667777777776651 23 344444 6677777776663 222
Q ss_pred C-CCCCCcccEEEcCCCccCCcccc---ccc--CCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 80 G-IGSLKKLKVLYMCHNSVKEWGEL---NKI--NDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 80 ~-~~~~~~L~~l~l~~n~i~~~~~~---~~~--~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
. +..+++|+.|++++|.+++.... ..+ +.+++|+.|++++|.+..... ..+...+...+++|+.|+
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~-~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV-RTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH-HHHHHHHHHHCTTCCEEE
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH-HHHHHHHHhcCCCceEEE
Confidence 2 45566677777777666643110 122 235666677777766654200 011122224566666654
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.04 E-value=2.5e-10 Score=82.08 Aligned_cols=124 Identities=11% Similarity=0.122 Sum_probs=85.1
Q ss_pred CCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccc--cc-CccccccccceeeccccccCCc-c-CCCCCCcccEEE
Q psy1563 18 NPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKT--FT-GLEPLGDCLEELWISYNFIEKT-K-GIGSLKKLKVLY 91 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~--~~-~~~~~~~~L~~l~l~~n~~~~l-~-~~~~~~~L~~l~ 91 (152)
+.++.+++++|.+.... .+..+++|+.+++++|.++. ++ .+..+. +|+.|++++|.++.. + .+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 67889999999887664 66678999999999998864 44 334454 889999988877633 2 256688888888
Q ss_pred cCCC-ccCCcccccccCCCCCccEEEecCC-CCccccchhHHHHHHHHhCC-CcccccC
Q psy1563 92 MCHN-SVKEWGELNKINDCPVLEDLVFCGN-PIVENLEESAYRVEIKKRLP-RLKKLDG 147 (152)
Q Consensus 92 l~~n-~i~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~~~~~~~l~-~L~~l~~ 147 (152)
+++| .+++......+..+++|+.+++++| .+.+. .....+..++ +|+.|+.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETITQLNL 202 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCCEEEC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCCEEEe
Confidence 8888 6764221223456777888888888 66532 1122355666 6666644
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.01 E-value=3.6e-10 Score=83.01 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=50.6
Q ss_pred CCCCCcEEEccCCcccc------cc-CCcCCccCcEEEcCCCccc-----ccc-CccccccccceeeccccccCCc----
Q psy1563 16 GPNPNTKLSLSTNLIEK------IS-GLMSLKKLRILALGRNMIK-----TFT-GLEPLGDCLEELWISYNFIEKT---- 78 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~------~~-~l~~~~~L~~l~l~~n~~~-----~~~-~~~~~~~~L~~l~l~~n~~~~l---- 78 (152)
.+++|+.|++++|.++. .+ .+..+++|+.|++++|.++ .++ .+..+. +|+.|++++|.++..
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEEECCCCCCchhhHHH
Confidence 34455555555555541 22 4445555555555555553 222 223333 555555555555432
Q ss_pred -cC-C--CCCCcccEEEcCCCccCC-----ccccccc-CCCCCccEEEecCCCCccc
Q psy1563 79 -KG-I--GSLKKLKVLYMCHNSVKE-----WGELNKI-NDCPVLEDLVFCGNPIVEN 125 (152)
Q Consensus 79 -~~-~--~~~~~L~~l~l~~n~i~~-----~~~~~~~-~~l~~L~~l~l~~n~~~~~ 125 (152)
+. + +.+++|+.|++++|.++. ++. .+ ..+++|+.+++.+|++.+.
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--VIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH--HHHhcCCCceEEEccCCcCCcc
Confidence 11 1 224555555555555554 221 12 2345555555555555543
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=3.8e-10 Score=82.35 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=90.1
Q ss_pred CCCCCCcEEEccCCcccccc------CCcCCc-cCcEEEcCCCcccccc--Ccccc----ccccceeeccccccCCccC-
Q psy1563 15 KGPNPNTKLSLSTNLIEKIS------GLMSLK-KLRILALGRNMIKTFT--GLEPL----GDCLEELWISYNFIEKTKG- 80 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~------~l~~~~-~L~~l~l~~n~~~~~~--~~~~~----~~~L~~l~l~~n~~~~l~~- 80 (152)
...++|++|++++|.++..+ .+..++ +|+.|++++|.++... .+... .++|+.|++++|.++....
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 34456999999999998653 355777 8999999999998653 33332 1389999999999876532
Q ss_pred -----CCCC-CcccEEEcCCCccCCccccc---ccCC-CCCccEEEecCCCCccccchhHHHHHHHHhCC-CcccccC
Q psy1563 81 -----IGSL-KKLKVLYMCHNSVKEWGELN---KIND-CPVLEDLVFCGNPIVENLEESAYRVEIKKRLP-RLKKLDG 147 (152)
Q Consensus 81 -----~~~~-~~L~~l~l~~n~i~~~~~~~---~~~~-l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~-~L~~l~~ 147 (152)
+..+ ++|+.|++++|.+++.+... .+.. .+.|+.|++++|.+.+... ......+..++ +|+.|+.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS--DELIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH--HHHHHHHhcCCccccEeee
Confidence 3344 79999999999998765321 1233 3578888888888875432 22222334444 6666643
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=8.9e-09 Score=74.13 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=28.6
Q ss_pred ccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCcc-EEEecC
Q psy1563 64 CLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLE-DLVFCG 119 (152)
Q Consensus 64 ~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~-~l~l~~ 119 (152)
+|+.+++++|.++.++. +..+++|+.+.+.+| ++.++. ..|..+.+|+ .+.+..
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA 283 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc
Confidence 55556666555555543 455555666655554 444442 2444555555 555554
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.90 E-value=5.6e-10 Score=83.43 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=62.7
Q ss_pred CCCCCCcEEEccCCccccc-----c-CCcCCccCcEEEcCCCccccc--cCccccc----cccceeeccccccCCc----
Q psy1563 15 KGPNPNTKLSLSTNLIEKI-----S-GLMSLKKLRILALGRNMIKTF--TGLEPLG----DCLEELWISYNFIEKT---- 78 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~-----~-~l~~~~~L~~l~l~~n~~~~~--~~~~~~~----~~L~~l~l~~n~~~~l---- 78 (152)
..+++++.|++++|.++.. + .+..+++|+++++++|.++.. ..+.... ++|+.+++++|.++..
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 3455666666666666522 2 344556666666666665532 1111111 1466666666665531
Q ss_pred -c-CCCCCCcccEEEcCCCccCCcccc--c--ccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 79 -K-GIGSLKKLKVLYMCHNSVKEWGEL--N--KINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 79 -~-~~~~~~~L~~l~l~~n~i~~~~~~--~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+ .+..+++|+.|++++|.+++.... . .....++|+.+++++|.+.+... ......+..+++|+.|+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--EPLASVLRAKPDFKELT 176 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--HHHHHHHHHCTTCCEEE
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--HHHHHHHhhCCCCCEEE
Confidence 1 145566666666666665532110 0 01123345566666555554321 11222344455555543
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.84 E-value=6.4e-10 Score=83.15 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=5.7
Q ss_pred CCcccEEEcCCCcc
Q psy1563 84 LKKLKVLYMCHNSV 97 (152)
Q Consensus 84 ~~~L~~l~l~~n~i 97 (152)
+++|+.|++++|.+
T Consensus 283 ~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 283 KESLKELSLAGNEL 296 (461)
T ss_dssp CTTCCEEECTTCCC
T ss_pred CCCcceEECCCCCC
Confidence 33444444444433
No 138
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.84 E-value=9.9e-09 Score=74.54 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=57.5
Q ss_pred CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccc-cc--Cccccccccc-eeeccccccCCccC--CCCCCccc
Q psy1563 17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKT-FT--GLEPLGDCLE-ELWISYNFIEKTKG--IGSLKKLK 88 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~-~~--~~~~~~~~L~-~l~l~~n~~~~l~~--~~~~~~L~ 88 (152)
.+++++|++++|+|+.++ .+..+++|++|++++|.+.. ++ .+..+. ++. .+.++.|.++.++. +..+++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCCcccccCchhhhhccccc
Confidence 357889999999998886 57888999999999888743 44 233444 443 34555666666633 56677777
Q ss_pred EEEcCCCccCCcc
Q psy1563 89 VLYMCHNSVKEWG 101 (152)
Q Consensus 89 ~l~l~~n~i~~~~ 101 (152)
++++++|.++..+
T Consensus 108 ~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 108 YLLISNTGIKHLP 120 (350)
T ss_dssp EEEEEEECCSSCC
T ss_pred cccccccccccCC
Confidence 7777777666544
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.76 E-value=1.8e-09 Score=79.35 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=75.2
Q ss_pred CCCCcEEEccCCccccc--cC-CcCCccCcEEEcCCCcccccc--Ccc----ccccccceeeccccccCCccC------C
Q psy1563 17 PNPNTKLSLSTNLIEKI--SG-LMSLKKLRILALGRNMIKTFT--GLE----PLGDCLEELWISYNFIEKTKG------I 81 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~--~~-l~~~~~L~~l~l~~n~~~~~~--~~~----~~~~~L~~l~l~~n~~~~l~~------~ 81 (152)
.+.|+.|++++|.++.. .. ...+++|+.|++++|.++... .+. ...+.|+.|++++|.++.... +
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 35777777777777543 22 223456777777777776432 111 111367888888887754211 3
Q ss_pred CCCCcccEEEcCCCccCCccc---ccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 82 GSLKKLKVLYMCHNSVKEWGE---LNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 82 ~~~~~L~~l~l~~n~i~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
...++|++|++++|.|++... ...+...+.|+.|++++|.+.+... ......+...++|+.||.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~--~~l~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA--LALARAAREHPSLELLHL 246 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--HHHHHHHHHCSSCCEEEC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--HHHHHHHHhCCCCCEEec
Confidence 456778888888887765321 1123445677888888887764322 222333456677777654
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=5.3e-08 Score=70.06 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=39.7
Q ss_pred CccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCccc-EEEcCCCccCCcccccccCCCCCcc
Q psy1563 39 LKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLK-VLYMCHNSVKEWGELNKINDCPVLE 113 (152)
Q Consensus 39 ~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~-~l~l~~n~i~~~~~~~~~~~l~~L~ 113 (152)
+++|+.+++++|.++.++ .+..+. +|+.++++.| ++.++. +..+.+|+ .+.+.+ .++.++. ..|..|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~-~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKK-YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCC-CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhCCccCC
Confidence 444555555555555444 233333 5555555544 443432 44555555 555544 4444432 2444555555
Q ss_pred EEEecCCCCcccc
Q psy1563 114 DLVFCGNPIVENL 126 (152)
Q Consensus 114 ~l~l~~n~~~~~~ 126 (152)
.+++.+|.+....
T Consensus 301 ~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 301 YVLATGDKITTLG 313 (329)
T ss_dssp EEEECSSCCCEEC
T ss_pred EEEeCCCccCccc
Confidence 5555555554433
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=7.1e-09 Score=76.15 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=91.0
Q ss_pred CCCCcEEEccCCcccccc--C----Cc-CCccCcEEEcCCCccccc--cCccccccccceeeccccccCCccC--C----
Q psy1563 17 PNPNTKLSLSTNLIEKIS--G----LM-SLKKLRILALGRNMIKTF--TGLEPLGDCLEELWISYNFIEKTKG--I---- 81 (152)
Q Consensus 17 l~~l~~L~l~~n~l~~~~--~----l~-~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~~~~l~~--~---- 81 (152)
++.++.|++++|.++... . +. ..++|+.|++++|.++.. ..+....++|+.|++++|.++.... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999999997542 2 22 336899999999998743 2343332389999999999875421 2
Q ss_pred -CCCCcccEEEcCCCccCCcccc---cccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCc
Q psy1563 82 -GSLKKLKVLYMCHNSVKEWGEL---NKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGE 148 (152)
Q Consensus 82 -~~~~~L~~l~l~~n~i~~~~~~---~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 148 (152)
...++|+.|++++|.+++.... ..+...+.|+.|++++|.+.+... ......+...++|+.||..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~--~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL--ELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH--HHHHHHGGGCSCCCEEECC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH--HHHHHHHhcCCCcCeEECC
Confidence 3468899999999999863311 123567889999999999875321 2223345667788888653
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1e-07 Score=63.32 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=81.2
Q ss_pred cCCCCCCCcEEEccCC-ccccc-----c-CCcCCccCcEEEcCCCcccccc------CccccccccceeeccccccCCc-
Q psy1563 13 KFKGPNPNTKLSLSTN-LIEKI-----S-GLMSLKKLRILALGRNMIKTFT------GLEPLGDCLEELWISYNFIEKT- 78 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n-~l~~~-----~-~l~~~~~L~~l~l~~n~~~~~~------~~~~~~~~L~~l~l~~n~~~~l- 78 (152)
.+...+.|++|++++| .+... . .+...++|++|++++|.+..-. .+.... .|+.|++++|.++.-
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHH
Confidence 3567889999999999 88642 2 4566789999999999987421 223333 899999999998752
Q ss_pred -----cCCCCCCcccEEEc--CCCccCCccc---ccccCCCCCccEEEecCCCCcc
Q psy1563 79 -----KGIGSLKKLKVLYM--CHNSVKEWGE---LNKINDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 79 -----~~~~~~~~L~~l~l--~~n~i~~~~~---~~~~~~l~~L~~l~l~~n~~~~ 124 (152)
..+...++|+.|++ +.|.|++... ...+...+.|+.+++++|.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 22566788999999 8899886331 1134456789999999998763
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.39 E-value=8.5e-07 Score=68.17 Aligned_cols=38 Identities=8% Similarity=-0.050 Sum_probs=20.7
Q ss_pred CCCCCcEEEccCCcccccc------CCcCCccCcEEEcCCCccc
Q psy1563 16 GPNPNTKLSLSTNLIEKIS------GLMSLKKLRILALGRNMIK 53 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~------~l~~~~~L~~l~l~~n~~~ 53 (152)
++++|++|++++|.++... .+..+++|+.|++++|.++
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence 4566777777666654221 1234455666666655554
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.27 E-value=1.3e-06 Score=67.05 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=35.6
Q ss_pred CCCCCCcEEEccCCccccc-----c-CCcCCccCcEEEcCCCcccccc-Cccccccccceeecc
Q psy1563 15 KGPNPNTKLSLSTNLIEKI-----S-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWIS 71 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~-----~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~ 71 (152)
.+++.|+.|++++|.++.+ + .+..+++|+.|++++|.+..++ .+..+. +|+.++++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~-~L~~L~l~ 251 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA-NLEEFCGG 251 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT-TCCEEEEC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh-HHHhhccc
Confidence 3577888888888887622 2 3446788888888888766554 222232 55555554
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.24 E-value=3.8e-07 Score=70.10 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=58.9
Q ss_pred cCCccCcEEEcCCCccccc--cCccccccccceeeccccccCCcc--CC-CCCCcccEEEcCCCccCCcccccccCCCCC
Q psy1563 37 MSLKKLRILALGRNMIKTF--TGLEPLGDCLEELWISYNFIEKTK--GI-GSLKKLKVLYMCHNSVKEWGELNKINDCPV 111 (152)
Q Consensus 37 ~~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~~~~l~--~~-~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~ 111 (152)
..+++|+.|++++ .++.. +.+....++|+.|++++|.++... .+ ..+++|+.|++++|.+++.........+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3455666666655 33321 122332237888888888765431 12 457888888888888864432223345778
Q ss_pred ccEEEecCCCCccccchhHHHHHHHHhCCCcc
Q psy1563 112 LEDLVFCGNPIVENLEESAYRVEIKKRLPRLK 143 (152)
Q Consensus 112 L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~ 143 (152)
|+.+++.+|+++.. . ...+...+|+++
T Consensus 508 L~~L~l~~~~~~~~----~-~~~l~~~lp~l~ 534 (594)
T 2p1m_B 508 MRSLWMSSCSVSFG----A-CKLLGQKMPKLN 534 (594)
T ss_dssp SSEEEEESSCCBHH----H-HHHHHHHCTTEE
T ss_pred CCEEeeeCCCCCHH----H-HHHHHHhCCCCE
Confidence 88888888887321 1 222346677763
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.22 E-value=1.1e-05 Score=59.82 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=16.9
Q ss_pred CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALG 48 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~ 48 (152)
|.+|++|+.+++..|.++.++ ....+..|+.+.+.
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 445555555555555555443 11123444444444
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=7.2e-07 Score=62.62 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=63.4
Q ss_pred EEccCCcccccc-----CCcCCccCcEEEcCCCccccccCcc----ccccccceeeccccccCCccCCCCCC--cccEEE
Q psy1563 23 LSLSTNLIEKIS-----GLMSLKKLRILALGRNMIKTFTGLE----PLGDCLEELWISYNFIEKTKGIGSLK--KLKVLY 91 (152)
Q Consensus 23 L~l~~n~l~~~~-----~l~~~~~L~~l~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~~~~l~~~~~~~--~L~~l~ 91 (152)
++++.|..+.++ ....+++|+.|++++|.++.++.+. .+ ++|+.|+|++|.++.+..+..+. +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l-~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSERELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHS-TTCCEEECTTSCCCSGGGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhC-CCCCEEECCCCccCCchhhhhcccCCcceEE
Confidence 455566444332 1135789999999999998776443 34 49999999999998775544444 899999
Q ss_pred cCCCccCC-ccc-----ccccCCCCCccEEE
Q psy1563 92 MCHNSVKE-WGE-----LNKINDCPVLEDLV 116 (152)
Q Consensus 92 l~~n~i~~-~~~-----~~~~~~l~~L~~l~ 116 (152)
+++|.+.. .+. ...+..+++|+.|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999874 221 01234577777654
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.18 E-value=7.7e-07 Score=68.37 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=56.3
Q ss_pred CCCCCcEEEccCCcccccc--CCc-CCccCcEEEcCCC-cccc--ccCcc-ccccccceeeccccccCCc-----cC-CC
Q psy1563 16 GPNPNTKLSLSTNLIEKIS--GLM-SLKKLRILALGRN-MIKT--FTGLE-PLGDCLEELWISYNFIEKT-----KG-IG 82 (152)
Q Consensus 16 ~l~~l~~L~l~~n~l~~~~--~l~-~~~~L~~l~l~~n-~~~~--~~~~~-~~~~~L~~l~l~~n~~~~l-----~~-~~ 82 (152)
.++.|++|+++++.++... .+. .+++|+.|++++| .++. ++.+. .+ ++|+.|++++|.++.. +. ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHC-TTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhC-CCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4566777777776665331 232 4667777777766 4443 23333 23 3777777777765432 11 23
Q ss_pred CCCcccEEEcCCCc--cCCcccccccCCCCCccEEEecCC
Q psy1563 83 SLKKLKVLYMCHNS--VKEWGELNKINDCPVLEDLVFCGN 120 (152)
Q Consensus 83 ~~~~L~~l~l~~n~--i~~~~~~~~~~~l~~L~~l~l~~n 120 (152)
.+++|+.|+++.|. ++..........+++|+.+++.+|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 55677777777665 221100001123567777777766
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.12 E-value=1.5e-06 Score=57.57 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=79.2
Q ss_pred CCcCCccCcEEEcCCC-ccccc-----c-CccccccccceeeccccccCCcc------CCCCCCcccEEEcCCCccCCcc
Q psy1563 35 GLMSLKKLRILALGRN-MIKTF-----T-GLEPLGDCLEELWISYNFIEKTK------GIGSLKKLKVLYMCHNSVKEWG 101 (152)
Q Consensus 35 ~l~~~~~L~~l~l~~n-~~~~~-----~-~~~~~~~~L~~l~l~~n~~~~l~------~~~~~~~L~~l~l~~n~i~~~~ 101 (152)
.+...++|+.|++++| .+..- . .+.... +|+.|++++|.+..-. .+...++|++|++++|.|++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 4556789999999999 88742 1 333444 8999999999986431 1445678999999999998632
Q ss_pred c---ccccCCCCCccEEEe--cCCCCccccchhHHHHHHHHhCCCcccccCc
Q psy1563 102 E---LNKINDCPVLEDLVF--CGNPIVENLEESAYRVEIKKRLPRLKKLDGE 148 (152)
Q Consensus 102 ~---~~~~~~l~~L~~l~l--~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 148 (152)
. ...+...+.|+.|++ .+|.+..... ......+...+.|+.|+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~--~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVE--MEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHH--HHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHH--HHHHHHHHhCCCcCEEecc
Confidence 1 124556778999999 8899875432 3344556777888888653
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=1.8e-06 Score=56.83 Aligned_cols=101 Identities=19% Similarity=0.242 Sum_probs=66.4
Q ss_pred ccCcEEEcCCCccccc--cCccccccccceeeccccc-cCCc--cCCCC----CCcccEEEcCCC-ccCCcccccccCCC
Q psy1563 40 KKLRILALGRNMIKTF--TGLEPLGDCLEELWISYNF-IEKT--KGIGS----LKKLKVLYMCHN-SVKEWGELNKINDC 109 (152)
Q Consensus 40 ~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~-~~~l--~~~~~----~~~L~~l~l~~n-~i~~~~~~~~~~~l 109 (152)
..|+.++++++.++.. ..+..+. +|+.|++++|. +++- ..+.. +++|+.|++++| .|++.. +..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence 3578888888877643 3555555 88888888874 5432 11333 357999999998 588754 3456778
Q ss_pred CCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563 110 PVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK 144 (152)
Q Consensus 110 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~ 144 (152)
++|+.|++++++-..... .....+-..+|++++
T Consensus 139 ~~L~~L~L~~c~~Itd~g--l~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKE--KIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHH--HHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchH--HHHHHHHHHCCCcEE
Confidence 999999999986443321 223344567887753
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=2.1e-06 Score=56.54 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=64.0
Q ss_pred CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCc-cccc--cCcccc---ccccceeeccccc-cCCc--cCCCCCCc
Q psy1563 18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNM-IKTF--TGLEPL---GDCLEELWISYNF-IEKT--KGIGSLKK 86 (152)
Q Consensus 18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~-~~~~--~~~~~~---~~~L~~l~l~~n~-~~~l--~~~~~~~~ 86 (152)
..|+.|+++++.++... .+..+++|+.|++++|. ++.. ..+... .++|+.|++++|. +|+- ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 36899999999987553 67899999999999995 7643 234432 2379999999985 6643 33678899
Q ss_pred ccEEEcCCC-ccCCc
Q psy1563 87 LKVLYMCHN-SVKEW 100 (152)
Q Consensus 87 L~~l~l~~n-~i~~~ 100 (152)
|++|+++++ .|++.
T Consensus 141 L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESCTTCCCH
T ss_pred CCEEECCCCCCCCch
Confidence 999999998 57764
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=6.1e-06 Score=60.39 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=68.5
Q ss_pred CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccc--cCcc--ccccccceeeccc--cc------cCCccC-C
Q psy1563 15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTF--TGLE--PLGDCLEELWISY--NF------IEKTKG-I 81 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~--~~~~--~~~~~L~~l~l~~--n~------~~~l~~-~ 81 (152)
..+|.|+.|.++++.-..++.+ .+++|+.|++..+.++.- ..+. .+ |+|+.|+|+. +. +..+.. +
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~l-p~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDL-PNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBC-TTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccC-CCCcEEEEeccccccccchhHHHHHHHH
Confidence 4567777777766531122333 266777777776665421 1222 23 4777777742 11 111111 1
Q ss_pred --CCCCcccEEEcCCCccCCcc--cccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 82 --GSLKKLKVLYMCHNSVKEWG--ELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 82 --~~~~~L~~l~l~~n~i~~~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
..+++|++|.+++|.+.+.. .......++.|+.|+++.|.+.+.-. .....-+..+++|+.|+.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~--~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA--RLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH--HHHHTTHHHHTTCSEEEC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH--HHHHhhcccCCcceEEEC
Confidence 34678888888888776421 11112346778888888887764311 011111245677776654
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.82 E-value=0.00016 Score=53.57 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=46.1
Q ss_pred CCcCCccCcEEEcCCCccc-----ccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccc
Q psy1563 35 GLMSLKKLRILALGRNMIK-----TFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNK 105 (152)
Q Consensus 35 ~l~~~~~L~~l~l~~n~~~-----~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~ 105 (152)
.+..|++|+.+.+.++.+. .++ .+..+. +|+.+.+.. .++.++. +..+.+|+.+.+..+ ++.++. ..
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF-SA 341 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT-TS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH-Hh
Confidence 4555666666666555443 233 233343 666666663 3544432 556666777666443 555443 24
Q ss_pred cCCCCCccEEEecCCCCcc
Q psy1563 106 INDCPVLEDLVFCGNPIVE 124 (152)
Q Consensus 106 ~~~l~~L~~l~l~~n~~~~ 124 (152)
|..+ .|+.+.+.+|....
T Consensus 342 F~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp SSSS-CCCEEEECCSSCCB
T ss_pred CCCC-CCCEEEEcCCCCcc
Confidence 5556 67777777665443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.39 E-value=0.00023 Score=52.01 Aligned_cols=126 Identities=17% Similarity=0.072 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEccCCccc----------ccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCcc--C
Q psy1563 14 FKGPNPNTKLSLSTNLIE----------KIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK--G 80 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~----------~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~--~ 80 (152)
..++++|+.|.+...... .+. .+..+|+|+.|.++++.-..++.+. . ++|+.|++..+.++.-. .
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~-~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-R-PNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-C-TTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-C-CCCcEEEEecCCCChHHHHH
Confidence 456788999988654321 122 3456789999999887322334432 4 48999999888765321 1
Q ss_pred C--CCCCcccEEEcCC--Cc------cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHH---hCCCcccccC
Q psy1563 81 I--GSLKKLKVLYMCH--NS------VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKK---RLPRLKKLDG 147 (152)
Q Consensus 81 ~--~~~~~L~~l~l~~--n~------i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~---~l~~L~~l~~ 147 (152)
+ ..+++|+.|++.. +. +..+........+++|+.|.+.+|.+..... ..+. .+++|+.||.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~------~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV------EMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH------HHHHHCSSGGGCSEEEC
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH------HHHHhCccCCCCCEEEC
Confidence 2 3688999998742 21 2222211111347899999999998874221 1232 4667887765
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.33 E-value=0.0029 Score=46.34 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=70.6
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~ 86 (152)
.|.++..|+.+.+..+. ..++ .+..++.|+.+.+. +.++.++ .+..+. +|+.+.+..+ ++.+.. +..+.+
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCC
Confidence 46677778888776443 3443 56778888888885 3455565 344555 8888888754 555533 778888
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCC
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~ 121 (152)
|+.+.+-. .++.++. ..|..|.+|+.+.+.++.
T Consensus 336 L~~i~ip~-sv~~I~~-~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPS-SVTKIPE-SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECT-TCCBCCG-GGGTTCTTCCEEEESSCH
T ss_pred CCEEEECc-ccCEEhH-hHhhCCCCCCEEEECCce
Confidence 98888854 3776664 367788889998888764
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.0017 Score=47.25 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=25.0
Q ss_pred ccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEec
Q psy1563 64 CLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFC 118 (152)
Q Consensus 64 ~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~ 118 (152)
+|+.+.+..+.++.++. +.++.+|+.+.+..+ ++.++. ..|..|.+|+.+.+.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-YAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCCCCCC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEEC
Confidence 55555555554444432 445555555555332 444432 234445555555443
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.17 E-value=0.0013 Score=40.96 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=29.7
Q ss_pred EEEcCCCccc--cccCccccccccceeeccccccCCccC--CCCCCcccEEEcCCCccC
Q psy1563 44 ILALGRNMIK--TFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVK 98 (152)
Q Consensus 44 ~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~ 98 (152)
.++-+++.++ .+|.- +.++++.|+|++|.++.++. +..+++|+.|++++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555556555 55521 22256666666666666643 455566666666666554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.05 E-value=0.0071 Score=43.90 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=78.8
Q ss_pred CCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCccc
Q psy1563 15 KGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLK 88 (152)
Q Consensus 15 ~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~ 88 (152)
..+..++.+.+..+ +..++ .+..+..|+.+.+..+ ++.++ .+.... .|+.+.+..+ ++.++. +..+.+|+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccc
Confidence 34555666665433 34443 5667788888888765 55554 333444 7888887654 444533 67889999
Q ss_pred EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563 89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147 (152)
Q Consensus 89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~ 147 (152)
.+.+.++.++.++. ..+..+.+|+.+.+..+ +...... .+..+.+|+.+..
T Consensus 290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~------aF~~C~~L~~i~i 340 (379)
T 4h09_A 290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY------AFKNCKALSTISY 340 (379)
T ss_dssp EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT------TTTTCTTCCCCCC
T ss_pred cccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH------HhhCCCCCCEEEE
Confidence 99998888888775 37788999999999754 4433222 2566777776643
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.0017 Score=40.42 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=25.3
Q ss_pred EEEccCCccc--ccc-CCcCCccCcEEEcCCCcccccc-C-ccccccccceeecccccc
Q psy1563 22 KLSLSTNLIE--KIS-GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFI 75 (152)
Q Consensus 22 ~L~l~~n~l~--~~~-~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~ 75 (152)
.++-+++.++ .+| .+ .++++.|++++|.++.++ . +..+. +|+.++|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALP-ALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCT-TCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhcc-ccCEEEecCCCe
Confidence 4445555554 444 22 224556666666665554 2 22333 556666665544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.70 E-value=0.0053 Score=44.98 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=68.1
Q ss_pred cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK 86 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~ 86 (152)
.+.+++.|+.+.+. +.++.++ .+..+.+|+.+.+..+ ++.++ .+..+. +|+.+.+..+ ++.+.. +.++.+
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~-~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE-QLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC-CCCEEEECcc-cCEEhHhHhhCCCC
Confidence 46678999999986 5667775 7888999999999865 66665 455566 8999999754 666643 789999
Q ss_pred ccEEEcCCCccCCcccccccCCCCCccEEEecCCC
Q psy1563 87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121 (152)
Q Consensus 87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~ 121 (152)
|+.+.+.++.... ..+..+..|+.+.+..+.
T Consensus 359 L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 359 LNNIEYSGSRSQW----NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCEEEESSCHHHH----HTCBCCCCC---------
T ss_pred CCEEEECCceeeh----hhhhccCCCCEEEeCCCC
Confidence 9999998774331 134456667777665543
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.59 E-value=0.012 Score=43.12 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=15.6
Q ss_pred CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEec
Q psy1563 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFC 118 (152)
Q Consensus 81 ~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~ 118 (152)
+.++.+|+.+.+..+ ++.++. ..+..|.+|+.+.+.
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGA-NAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECT-TTBTTCTTCCEEEEE
T ss_pred ccCCCCCCEEEECcc-ccEehH-HHhhCCCCCCEEEEC
Confidence 344445554444333 333332 234444445554443
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.46 E-value=0.02 Score=41.89 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=81.2
Q ss_pred cCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563 13 KFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV 89 (152)
Q Consensus 13 ~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~ 89 (152)
.+.++..++.+.+..+...-.. .+..+..++.+......+.. ..+.... +|+.+.+..+ ++.++. +..+.+|+.
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~-~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCS-SLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCT-TCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccceeEEcCCCcceeeccccccccccceeccCceeecc-ccccccc-cccccccccc-cceechhhhcCCCCCCE
Confidence 4567888898888766443222 67778888888776654321 1333444 7888888654 555543 778899999
Q ss_pred EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563 90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146 (152)
Q Consensus 90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~ 146 (152)
+.+.+ .++.++. ..+..|.+|+.+.+..+ +...... .+..+.+|+.++
T Consensus 325 i~lp~-~v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~------aF~~C~~L~~i~ 372 (394)
T 4fs7_A 325 IDLPY-LVEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN------AFQGCINLKKVE 372 (394)
T ss_dssp ECCCT-TCCEECT-TTTTTCTTCCEECCCTT-CCEECTT------TBTTCTTCCEEE
T ss_pred EEeCC-cccEEhH-HhccCCCCCCEEEECcc-ccEehHH------HhhCCCCCCEEE
Confidence 98864 4777664 36788999999999776 5433322 256777777664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.35 E-value=0.0045 Score=41.33 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=65.3
Q ss_pred CCCCCCcEEEccCC-ccccc------cCCcCCccCcEEEcCCCcccccc--Cc----cccccccceeeccccccCCcc--
Q psy1563 15 KGPNPNTKLSLSTN-LIEKI------SGLMSLKKLRILALGRNMIKTFT--GL----EPLGDCLEELWISYNFIEKTK-- 79 (152)
Q Consensus 15 ~~l~~l~~L~l~~n-~l~~~------~~l~~~~~L~~l~l~~n~~~~~~--~~----~~~~~~L~~l~l~~n~~~~l~-- 79 (152)
.+-+.|++|+++++ .|... ..+..-++|+.|++++|.+.... .+ .... .|+.|+|+.|.|..-.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHHHH
Confidence 34567888888875 66532 14555677888888888887432 22 2333 7888888888876331
Q ss_pred ----CCCCCCcccEEEcCCC---ccCCccc---ccccCCCCCccEEEecCCCC
Q psy1563 80 ----GIGSLKKLKVLYMCHN---SVKEWGE---LNKINDCPVLEDLVFCGNPI 122 (152)
Q Consensus 80 ----~~~~~~~L~~l~l~~n---~i~~~~~---~~~~~~l~~L~~l~l~~n~~ 122 (152)
.+..-+.|+.|++++| .+.+... ...+..-+.|..+++..|..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1455567888888755 3332110 11233445677888876654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.33 E-value=0.0037 Score=41.78 Aligned_cols=109 Identities=9% Similarity=-0.012 Sum_probs=72.0
Q ss_pred cCCccCcEEEcCCC-ccccc------cCccccccccceeeccccccCCcc--C----CCCCCcccEEEcCCCccCCcccc
Q psy1563 37 MSLKKLRILALGRN-MIKTF------TGLEPLGDCLEELWISYNFIEKTK--G----IGSLKKLKVLYMCHNSVKEWGEL 103 (152)
Q Consensus 37 ~~~~~L~~l~l~~n-~~~~~------~~~~~~~~~L~~l~l~~n~~~~l~--~----~~~~~~L~~l~l~~n~i~~~~~~ 103 (152)
..-++|+.|+++++ .+..- ..+.... .|+.|+|++|.+.... . +..-+.|+.|+++.|.|++..-.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 45678999999986 77632 2344455 8999999999986442 1 34557999999999999863321
Q ss_pred ---cccCCCCCccEEEecCCCC---ccccchhHHHHHHHHhCCCcccccCc
Q psy1563 104 ---NKINDCPVLEDLVFCGNPI---VENLEESAYRVEIKKRLPRLKKLDGE 148 (152)
Q Consensus 104 ---~~~~~l~~L~~l~l~~n~~---~~~~~~~~~~~~~~~~l~~L~~l~~~ 148 (152)
..+..-+.|+.|++++|.. .... .....+++..-+.|+.|+..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g--~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQV--EMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHH--HHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHH--HHHHHHHHHhCCCcCeEecc
Confidence 1344556799999986533 2211 12344556666777776543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.28 E-value=19 Score=20.75 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=16.1
Q ss_pred CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCC
Q psy1563 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGR 49 (152)
Q Consensus 14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~ 49 (152)
|.+|..|+.+.+-. .++.+. .|..|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 44555555555442 233332 344555555544443
Done!