RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1563
(152 letters)
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 65 LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNK 105
LE L +S N I + +L L+ L + N + + L+
Sbjct: 3 LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLE 59
L LS N I + L +L L L L N I + L
Sbjct: 4 ETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLS 42
Score = 27.5 bits (62), Expect = 0.49
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 40 KKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
L L L N I L L LE L +S N I +
Sbjct: 1 TNLETLDLSNNQITDLPPLSNL-PNLETLDLSGNKITDLSPL 41
Score = 24.8 bits (55), Expect = 4.1
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 85 KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
L+ L + +N + +L +++ P LE L GN I
Sbjct: 1 TNLETLDLSNNQIT---DLPPLSNLPNLETLDLSGNKI 35
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 35.3 bits (81), Expect = 0.008
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 21 TKLSLSTNLIEKISGLMS-LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
L LS N + + L+S L L L L N I L LEEL +S N I +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL 225
Query: 80 -GIGSLKKLKVLYMCHNSVKE 99
+ +LK L L + +N +++
Sbjct: 226 SSLSNLKNLSGLELSNNKLED 246
Score = 32.6 bits (74), Expect = 0.052
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 23 LSLSTNLIEKISGLMS-LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
L LS N I ++ +S LK L L L N ++ LE L +S N I +
Sbjct: 214 LDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSL 273
Query: 82 GSLKKLKVLYMCHNSVKE 99
GSL L+ L + NS+
Sbjct: 274 GSLTNLRELDLSGNSLSN 291
>gnl|CDD|188086 TIGR00819, ydaH, p-Aminobenzoyl-glutamate transporter family. The
p-Aminobenzoyl-glutamate transporter family includes two
transporters, the AbgT (YdaH) protein of E. coli and
MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic
in wild type cells, but when expressed on a high copy
number plasmid, or when expressed at higher levels due
to mutation, it allows utilization of
p-aminobenzoyl-glutamate as a source of p-aminobenzoate
for p-aminobenzoate auxotrophs. p-Aminobenzoate is a
constituent of and a precursor for the biosynthesis of
folic acid [Hypothetical proteins, Conserved].
Length = 525
Score = 29.9 bits (67), Expect = 0.57
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNF 74
P K LI + L + + + I + IK F+G PLG L L +
Sbjct: 55 DNPPVGAKGRADDGLIHVVKLLDADEGIHIFL--PHTIKNFSGFAPLGAILALL-LGAGI 111
Query: 75 IEKTKGIGSLKKLKVLYMCHNSVK 98
EK G + L H++ K
Sbjct: 112 AEK---SGLIPALMRKLASHSNAK 132
>gnl|CDD|233049 TIGR00608, radc, DNA repair protein radc. The genes in this
family for which the functions are known have an as yet
porrly defined role in determining sensitivity to DNA
damaging agents such as UV irradiation. This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 218
Score = 27.8 bits (62), Expect = 2.3
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 29 LIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLK 88
L+ I + K L +L+L + ++ F + LG L + GIG K ++
Sbjct: 19 LLAIILRTGTPKGLDVLSLSKRLLDVFGRQDSLGHLLS---APPEELSSVPGIGEAKAIQ 75
Query: 89 VL 90
+
Sbjct: 76 LK 77
>gnl|CDD|219962 pfam08668, HDOD, HDOD domain.
Length = 195
Score = 27.2 bits (61), Expect = 3.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 39 LKKLRILALGRNMIKTFTGLEPLGDCLEELW 69
L+ +R L L ++ + F G LG L+ W
Sbjct: 66 LRTVRNLVLSLSVKRIFRGTPSLGFDLKGFW 96
>gnl|CDD|217741 pfam03806, ABG_transport, AbgT putative transporter family.
Length = 502
Score = 27.3 bits (61), Expect = 3.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 50 NMIKTFTGLEPLG 62
NM+K FT PLG
Sbjct: 70 NMVKNFTSFAPLG 82
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 25.2 bits (56), Expect = 4.1
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 65 LEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
L+ L +S N + L LKVL + N++ + P L L GN +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNNL 60
Score = 24.4 bits (54), Expect = 8.3
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
L LS N + I L L++L L N + + F+GL L L +S N
Sbjct: 3 KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLP----SLRSLDLSGN 58
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 26.9 bits (59), Expect = 6.2
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 27 TNLIEKISGLMSLKKLRILALGR--NMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSL 84
T +I+ ++ KL ++ + M G +P+ L + FI+ +G S+
Sbjct: 478 TTMIQYLAL-KLHFKLTVINKSQQTEMSDDLGGYKPINGSTLGLPLHERFIDIFEGTFSM 536
Query: 85 KK-LKVLYMCH---------NSVKEWGELNKI 106
KK +K + M N K W E NKI
Sbjct: 537 KKNIKFICMEQRVSVPVCWKNKEKLWWEANKI 568
>gnl|CDD|217421 pfam03200, Glyco_hydro_63, Mannosyl oligosaccharide glucosidase.
This is a family of eukaryotic enzymes belonging to
glycosyl hydrolase family 63. They catalyze the specific
cleavage of the non-reducing terminal glucose residue
from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide
glucosidase EC:3.2.1.106 is the first enzyme in the
N-linked oligosaccharide processing pathway.
Length = 775
Score = 26.6 bits (59), Expect = 7.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 58 LEPLGDCL---EELWISYNFIEKTKGIGSLKKLKVLYMCHNS 96
LE L D + EELW Y G+ SL K LYM N+
Sbjct: 647 LEKLLDLIRDPEELWSDY-------GLRSLSKSSPLYMTRNT 681
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 26.2 bits (58), Expect = 7.1
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 35 GLMSLKKLRILALGRNMI------KTFTGLEPLGDCLEELWISYNFIE 76
L SLK L +L LG N + + L L L +S N I
Sbjct: 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.138 0.403
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,800,010
Number of extensions: 709224
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 28
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (24.8 bits)