RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1563
(152 letters)
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 125 bits (315), Expect = 4e-37
Identities = 67/132 (50%), Positives = 87/132 (65%), Gaps = 4/132 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
L+LSTN IEKIS L ++ LRIL+LGRN+IK L+ + D LEELWISYN I G
Sbjct: 51 KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESA----YRVEIK 136
I L L+VLYM +N + WGE++K+ LEDL+ GNP+ + +E+ YR+E+
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170
Query: 137 KRLPRLKKLDGE 148
KRLP LKKLDG
Sbjct: 171 KRLPNLKKLDGM 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 92.1 bits (228), Expect = 1e-22
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 17 PNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTF-TGLEPLGDCLEELWISYNFI 75
L L+ + + L L + L L N ++ L L CLE L S N +
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR-CLEVLQASDNAL 498
Query: 76 EKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEI 135
E G+ +L +L+ L +C+N +++ + + CP L L GN + +E + +
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC---QEEGIQERL 555
Query: 136 KKRLPRLKKLD 146
+ LP + +
Sbjct: 556 AEMLPSVSSIL 566
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 88.5 bits (219), Expect = 2e-22
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 18 NPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK 77
+ + + +L + L++ +L M T +E L L +S N + +
Sbjct: 126 DGSQQ-ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYR 184
Query: 78 TKGIGSL----KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL-EESAYR 132
+ S+ LK+L + N +K EL+KI LE+L GN + + ++S Y
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYI 243
Query: 133 VEIKKRLPRLKKLDGEVLP 151
I++R P+L +LDG LP
Sbjct: 244 SAIRERFPKLLRLDGHELP 262
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 85.9 bits (213), Expect = 4e-22
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 21 TKLSLSTNLIEKISGLMS-LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
+L L I I L + L + + N I+ G L L+ L ++ N I +
Sbjct: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL-RRLKTLLVNNNRICRIG 80
Query: 80 GI--GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKK 137
+L L L + +NS+ E G+L+ + L L NP+ + YR+ +
Sbjct: 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT---NKKHYRLYVIY 137
Query: 138 RLPRLKKLDGE 148
++P+++ LD +
Sbjct: 138 KVPQVRVLDFQ 148
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 76.3 bits (188), Expect = 1e-18
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 10/152 (6%)
Query: 1 MEGEEREKENLYKFKGPNPNTKLSL---STNLIEKISGLMSLKKLRILALGRNMIKTFTG 57
ME R L + + P+ +L L +N + ++L L+ + +
Sbjct: 1 MEMGRRIHLEL-RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN 59
Query: 58 LEPLGDCLEELWISYNFIEKTKGI--GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDL 115
L L L++L +S N + + L L + N +K+ + + L+ L
Sbjct: 60 LPKLNK-LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118
Query: 116 VFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147
+ + YR + K LP+L LDG
Sbjct: 119 DLFNCEVT---NLNDYRENVFKLLPQLTYLDG 147
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 80.2 bits (197), Expect = 2e-18
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 7/127 (5%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
LSL N I I+GL+ L +L L LG N I T L L L+ L + N I
Sbjct: 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL-TKLDTLSLEDNQISDIVP 170
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
+ L KL+ LY+ N + + L + + L+ L +
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRALAGLKN---LDVLELFSQECLNKPI---NHQSNLVVPN 224
Query: 141 RLKKLDG 147
+K DG
Sbjct: 225 TVKNTDG 231
Score = 72.8 bits (178), Expect = 5e-16
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
++ + + I+ + G+ L + L L N + L L + L L++ N I+
Sbjct: 46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKN-LGWLFLDENKIKDLSS 104
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
+ LKKLK L + HN + ++N + P LE L N I + L
Sbjct: 105 LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDITVLSR---------- 151
Query: 139 LPRLKKLD 146
L +L L
Sbjct: 152 LTKLDTLS 159
Score = 68.6 bits (167), Expect = 2e-14
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
K +L + L + + + IK+ G++ L + + +L+++ N + K
Sbjct: 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLNGNKLTDIKP 82
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
+ +LK L L++ N +K +L+ + D L+ L N I + L
Sbjct: 83 LTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISDINGLVH---------- 129
Query: 139 LPRLKKLD 146
LP+L+ L
Sbjct: 130 LPQLESLY 137
Score = 64.0 bits (155), Expect = 7e-13
Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
+ + I++I + + L + + L + ++++ + + I+ +G
Sbjct: 2 GETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQG 60
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
I L + L++ N + + L L L N I + +L++
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLTN---LKNLGWLFLDENKIKDLSSLKD---------- 107
Query: 139 LPRLKKLD 146
L +LK L
Sbjct: 108 LKKLKSLS 115
Score = 30.8 bits (69), Expect = 0.16
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 15/84 (17%)
Query: 65 LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI-- 122
+ E I++ + + + SV + N+ ++ ++ + I
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS 57
Query: 123 VENLEESAYRVEIKKRLPRLKKLD 146
V+ ++ LP + KL
Sbjct: 58 VQGIQY----------LPNVTKLF 71
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 75.9 bits (187), Expect = 2e-18
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 23 LSLSTNLIEKISGLMS-LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
L + KI GL + L L+L + + + L L L++L +S N I +
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKL-PKLKKLELSENRIFGGLDM 89
Query: 82 --GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRL 139
L L L + N +K+ L + L+ L + + YR + K L
Sbjct: 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT---NLNDYRESVFKLL 146
Query: 140 PRLKKLDG 147
P+L LDG
Sbjct: 147 PQLTYLDG 154
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 71.2 bits (175), Expect = 7e-16
Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 24/150 (16%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
+L LS N I +S L L KL L++ RN +K G+ CL L++ N + T
Sbjct: 66 KELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA--CLSRLFLDNNELRDTDS 123
Query: 81 IGSLKKLKVLYMCHNSVKEWGEL-------------NKIND------CPVLEDLVFCGNP 121
+ LK L++L + +N +K L N+I + + + G
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183
Query: 122 IVENLEESAYRVEIKKRLPRLKKLDGEVLP 151
V E +K DG +
Sbjct: 184 CV---NEPVKYQPELYITNTVKDPDGRWIS 210
Score = 64.3 bits (157), Expect = 2e-13
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 17/128 (13%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
K +L + + L ++ + I++ G++ + L+EL +S+N I
Sbjct: 22 VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTN-LKELHLSHNQISDLSP 80
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
+ L KL+ L + N +K + L L N + ++L
Sbjct: 81 LKDLTKLEELSVNRNRLKNLNGIPSAC----LSRLFLDNNELRDTDSLIH---------- 126
Query: 139 LPRLKKLD 146
L L+ L
Sbjct: 127 LKNLEILS 134
Score = 58.1 bits (141), Expect = 4e-11
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 25 LSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSL 84
I ++ L LG+ + + L ++ + I+ G+
Sbjct: 4 QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSG-VQNFNGDNSNIQSLAGMQFF 62
Query: 85 KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLE 127
LK L++ HN + +L+ + D LE+L N + + +
Sbjct: 63 TNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGIP 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 70.1 bits (172), Expect = 3e-15
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 7/131 (5%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
L L N I IS L L L+ L++G + T L L L L N I
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK-LTTLKADDNKISDISP 190
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
+ SL L +++ +N + +++ + + L + I + +
Sbjct: 191 LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPN 244
Query: 141 RLKKLDGEVLP 151
+K G +
Sbjct: 245 VVKGPSGAPIA 255
Score = 67.4 bits (165), Expect = 2e-14
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
T+L LS N ++ +S + L+ ++ L L I T L L L+ L++ N I
Sbjct: 88 TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL-SNLQVLYLDLNQITNISP 146
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ L L+ L + + V +L + + L L N I
Sbjct: 147 LAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNKI 185
Score = 64.3 bits (157), Expect = 3e-13
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
L L N I ++ L +L K+ L L N +K + + L ++ L ++ I
Sbjct: 66 IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS-IKTLDLTSTQITDVTP 124
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
+ L L+VLY+ N + ++ + L+ L + + L
Sbjct: 125 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLTPLAN---------- 171
Query: 139 LPRLKKLD 146
L +L L
Sbjct: 172 LSKLTTLK 179
Score = 63.9 bits (156), Expect = 4e-13
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
T LS + I G+ L L L L N I L+ L + EL +S N ++
Sbjct: 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTK-ITELELSGNPLKNVSA 102
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
I L+ +K L + + ++ + L+ L N I + L
Sbjct: 103 IAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITNISPLAG---------- 149
Query: 139 LPRLKKLD 146
L L+ L
Sbjct: 150 LTNLQYLS 157
Score = 58.2 bits (141), Expect = 5e-11
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
K++ + + L + L+ + T G++ L + L L + N I
Sbjct: 22 IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN-LIGLELKDNQITDLAP 80
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ +L K+ L + N +K ++ I ++ L I
Sbjct: 81 LKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQI 119
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 68.2 bits (167), Expect = 1e-14
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
++ + + I+ + G+ L + L L N + L L L L++ N ++
Sbjct: 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANL-KNLGWLFLDENKVKDLSS 107
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
+ LKKLK L + HN + ++N + P LE L N I + L
Sbjct: 108 LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDITVLSR---------- 154
Query: 139 LPRLKKLD 146
L +L L
Sbjct: 155 LTKLDTLS 162
Score = 64.7 bits (158), Expect = 2e-13
Identities = 35/171 (20%), Positives = 53/171 (30%), Gaps = 43/171 (25%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGL-------------------EPL 61
TKL L+ N + I L +LK L L L N +K + L L
Sbjct: 71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130
Query: 62 GDC--LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGEL-------------NKI 106
LE L++ N I + L KL L + N + + L N I
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190
Query: 107 ND------CPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLP 151
+D L+ L + + +K DG ++
Sbjct: 191 SDLRALAGLKNLDVLELFSQECL---NKPINHQSNLVVPNTVKNTDGSLVT 238
Score = 64.3 bits (157), Expect = 3e-13
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
K +L + L + + + IK+ G++ L + + +L+++ N + K
Sbjct: 27 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLNGNKLTDIKP 85
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
+ +LK L L++ N VK +L+ + D L+ L N I + L
Sbjct: 86 LANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDINGLVH---------- 132
Query: 139 LPRLKKLD 146
LP+L+ L
Sbjct: 133 LPQLESLY 140
Score = 57.8 bits (140), Expect = 5e-11
Identities = 18/129 (13%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 20 NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
++ I++I + + L + + L + ++++ + + I+ +
Sbjct: 4 GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ 62
Query: 80 GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKK 137
GI L + L++ N + ++ + + L L N + + +L++
Sbjct: 63 GIQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKD--------- 110
Query: 138 RLPRLKKLD 146
L +LK L
Sbjct: 111 -LKKLKSLS 118
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 67.6 bits (166), Expect = 3e-14
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
+ N I I+ + ++ +L L +G N I T L PL + L L I N I
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKI---TDLSPLANLSQLTWLEIGTNQISDI 258
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
+ L KLK+L + N + +++ +N+ L L N + E I
Sbjct: 259 NAVKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDME-----VIGG- 309
Query: 139 LPRLKKLD 146
L L L
Sbjct: 310 LTNLTTLF 317
Score = 64.1 bits (157), Expect = 4e-13
Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
L+++ + ++ ++ + +L L L+L N I+ + L L L N I
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYFTAYVNQITDITP 216
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
+ ++ +L L + +N + +L+ + + L L N I + +++
Sbjct: 217 VANMTRLNSLKIGNNKIT---DLSPLANLSQLTWLEIGTNQISDINAVKD---------- 263
Query: 139 LPRLKKLD 146
L +LK L+
Sbjct: 264 LTKLKMLN 271
Score = 64.1 bits (157), Expect = 4e-13
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT-- 78
T L + TN I I+ + L KL++L +G N I + L L L L+++ N +
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQ-LNSLFLNNNQLGNEDM 304
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ IG L L L++ N + ++ + ++ F I
Sbjct: 305 EVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345
Score = 61.4 bits (150), Expect = 4e-12
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
TKL ++ + I G+ L L L L N I T + PL + L L+I N I
Sbjct: 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI---TDISPLSNLVKLTNLYIGTNKITDI 103
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
+ +L L+ LY+ +++ +++ + + + L N + +L +
Sbjct: 104 SALQNLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGANHNLSDLSPLSN------- 153
Query: 139 LPRLKKLD 146
+ L L
Sbjct: 154 MTGLNYLT 161
Score = 59.9 bits (146), Expect = 1e-11
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYN-FIEK 77
T L + TN I IS L +L LR L L + I + + PL + + L + N +
Sbjct: 91 TNLYIGTNKITDISALQNLTNLRELYLNEDNI---SDISPLANLTKMYSLNLGANHNLSD 147
Query: 78 TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ ++ L L + + VK ++ I + L L N I
Sbjct: 148 LSPLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQI 189
Score = 59.9 bits (146), Expect = 1e-11
Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
+ L + + L+ + L + + + G+E L + LE L ++ N I
Sbjct: 25 IRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTN-LEYLNLNGNQITDISP 83
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
+ +L KL LY+ N + +++ + + L +L + I + L
Sbjct: 84 LSNLVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISDISPLAN---------- 130
Query: 139 LPRLKKLD 146
L ++ L+
Sbjct: 131 LTKMYSLN 138
Score = 58.3 bits (142), Expect = 5e-11
Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
L+ I +I L + L + + T + + + +L ++ +
Sbjct: 3 ATLATLPAPINQIFPDADLAEGIRAVLQKASV---TDVVTQEELESITKLVVAGEKVASI 59
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
+GI L L+ L + N + +++ +++ L +L N I + + +
Sbjct: 60 QGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITD--------ISALQN 108
Query: 139 LPRLKKLD 146
L L++L
Sbjct: 109 LTNLRELY 116
Score = 54.1 bits (131), Expect = 1e-09
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
L++ +N I IS L +L +L L L N + +E +G L L++S N I
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHITDI 326
Query: 79 KGIGSLKKLKVLYMCHNSVKE 99
+ + SL K+ + +K+
Sbjct: 327 RPLASLSKMDSADFANQVIKK 347
Score = 29.0 bits (66), Expect = 0.56
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 65 LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
L I + L + + SV ++ + + LV G +
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVT---DVVTQEELESITKLVVAGEKV-A 57
Query: 125 NLEESAYRVEIKKRLPRLKKLD 146
+++ Y L L+ L+
Sbjct: 58 SIQGIEY-------LTNLEYLN 72
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 67.3 bits (165), Expect = 5e-14
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
L + N I I+ L L L L+L N +K L L L +L ++ N I
Sbjct: 202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAP 260
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ L KL L + N + ++ + L +L N +
Sbjct: 261 LSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQL 299
Score = 66.9 bits (164), Expect = 5e-14
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
T L L+ N I ++ L L KL L LG N I + L L L L ++ N +E
Sbjct: 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL-TALTNLELNENQLEDISP 304
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
I +LK L L + N++ +++ ++ L+ L F N +
Sbjct: 305 ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNNKV 343
Score = 65.4 bits (160), Expect = 2e-13
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
T L L+ N +E IS + +LK L L L N I + + L L+ L+ N +
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK-LQRLFFYNNKVSDVSS 348
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ +L + L HN + + L + L
Sbjct: 349 LANLTNINWLSAGHNQISDLTPLAN---LTRITQLGLNDQAW 387
Score = 62.7 bits (153), Expect = 2e-12
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
+L +S+N + IS L L L L N I + + PLG L+EL ++ N ++
Sbjct: 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELSLNGNQLKDI 236
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ SL L L + +N + L ++ L +L N I
Sbjct: 237 GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQI 277
Score = 61.1 bits (149), Expect = 5e-12
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
T L I+ I G+ L L + N + T + PL + L ++ ++ N I
Sbjct: 49 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQL---TDITPLKNLTKLVDILMNNNQIADI 105
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ +L L L + +N + +++ + + L L N I
Sbjct: 106 TPLANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTI 146
Score = 61.1 bits (149), Expect = 6e-12
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
+L LS+N I IS L L L+ L+ G T L+PL + LE L IS N +
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQ----VTDLKPLANLTTLERLDISSNKVSDI 192
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
+ L L+ L +N + ++ + L++L GN + + +
Sbjct: 193 SVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKD--------IGTLAS 241
Query: 139 LPRLKKLD 146
L L LD
Sbjct: 242 LTNLTDLD 249
Score = 59.6 bits (145), Expect = 2e-11
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
T+++ S N + I+ L +L KL + + N I + PL + L L + N I
Sbjct: 71 TQINFSNNQLTDITPLKNLTKLVDILMNNNQI---ADITPLANLTNLTGLTLFNNQITDI 127
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
+ +L L L + N++ +++ ++ L+ L GN + +
Sbjct: 128 DPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQL-SFGNQVTD 169
Score = 56.9 bits (138), Expect = 2e-10
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
K L + L ++ L R IK+ G+E L + L ++ S N +
Sbjct: 27 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLTDITP 85
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
+ +L KL + M +N + ++ + + L L N I + ++ K L
Sbjct: 86 LKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITD--------IDPLKNLT 134
Query: 141 RLKKLD 146
L +L+
Sbjct: 135 NLNRLE 140
Score = 55.7 bits (135), Expect = 4e-10
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 20 NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
+ I +I +L + LG+ + L + L I+
Sbjct: 4 GSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGIKSID 62
Query: 80 GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
G+ L L + +N + ++ + + L D++ N I
Sbjct: 63 GVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQI 102
Score = 51.9 bits (125), Expect = 1e-08
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
+L N + +S L +L + L+ G N I T L L + +L ++
Sbjct: 334 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR-ITQLGLNDQAWT-NAP 391
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEES 129
+ + + N I+D + N E S
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVS 440
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 60.0 bits (146), Expect = 5e-12
Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFI--EKT 78
T ++L+ + ++G+ ++ L + + + L + LE L I + +K
Sbjct: 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSN-LERLRIMGKDVTSDKI 105
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
+ L L +L + H++ + L KIN P + + N + ++ +K
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM------PLKT- 157
Query: 139 LPRLKKLD 146
LP LK L+
Sbjct: 158 LPELKSLN 165
Score = 55.7 bits (135), Expect = 2e-10
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 21 TKLSLSTNLI--EKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYN-FI 75
+L + + +KI L L L +L + + + L + + + +SYN I
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH-DDSILTKINTLPKVNSIDLSYNGAI 149
Query: 76 EKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ +L +LK L + + V + I D P L L I
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTI 193
Score = 39.6 bits (93), Expect = 1e-04
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 19/113 (16%)
Query: 38 SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSV 97
+ K LG++ T + L + ++ + GI +K L + +
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQMNS--LTYITLANINVTDLTGIEYAHNIKDLTINNIHA 78
Query: 98 KEWGELNKINDCPVLEDLVFCGNPI----VENLEESAYRVEIKKRLPRLKKLD 146
N I+ LE L G + + NL L L LD
Sbjct: 79 T---NYNPISGLSNLERLRIMGKDVTSDKIPNLSG----------LTSLTLLD 118
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 54.2 bits (131), Expect = 1e-09
Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 19/135 (14%)
Query: 21 TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKT------FTGLEPLGDCLEELWISYN 73
L LS N + + S + L++L L + +K F L L L IS+
Sbjct: 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR----NLIYLDISHT 136
Query: 74 FIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
GI L L+VL M NS +E + + L L + E L +A+
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAF 195
Query: 132 RVEIKKRLPRLKKLD 146
L L+ L+
Sbjct: 196 N-----SLSSLQVLN 205
Score = 37.7 bits (88), Expect = 6e-04
Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 42 LRILALGRNMIKT-----FTGLEPLGDCLEELWISYNFIEKTKGIGS-----LKKLKVLY 91
L L N +++ F L L +L +S N + KG S LK L
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQL----TKLSLSSNGLS-FKGCCSQSDFGTTSLKYLD 84
Query: 92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
+ N V + LE L F + + + E S + L L LD
Sbjct: 85 LSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFL-----SLRNLIYLD 132
Score = 35.8 bits (83), Expect = 0.003
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
T L LS +E++S SL L++L + N + + L L+ L S N
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS----LQVLDYSLN 233
Query: 74 FIEK-TKGI--GSLKKLKVLYMCHN 95
I K L L + N
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQN 258
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 53.9 bits (130), Expect = 2e-09
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 23/140 (16%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
+L L N I+ I L+ KL L LG N I+ + + L L EL + N
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP----TLRELHLDNN 251
Query: 74 FIEK-TKGIGSLKKLKVLYMCHNSVKE-----WGELNKINDCPVLEDLVFCGNPI-VENL 126
+ + G+ LK L+V+Y+ N++ + + + + NP+ +
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311
Query: 127 EESAYRVEIKKRLPRLKKLD 146
+ + +R + +
Sbjct: 312 QPATFR-----CVTDRLAIQ 326
Score = 41.2 bits (97), Expect = 4e-05
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK- 77
L L N I KI L+KL+ L + +N + P L EL I N I K
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS--LVELRIHDNRIRKV 138
Query: 78 TKGI-GSLKKLKVLYMCHNSVKE 99
KG+ L+ + + M N ++
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLEN 161
Score = 39.2 bits (92), Expect = 2e-04
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 21 TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDC--LEELWISY 72
+L L N + ++ +GL LK L+++ L N I F + + +
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303
Query: 73 NFIEKTKGIGS-----LKKLKVLYMCHN 95
N + + + + +
Sbjct: 304 NPV-PYWEVQPATFRCVTDRLAIQFGNY 330
Score = 28.8 bits (65), Expect = 0.58
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 21 TKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT 78
T L L N I ++ L+ L L L N I + +
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI---SKIHE------------------ 95
Query: 79 KGIGSLKKLKVLYMCHN 95
K L+KL+ LY+ N
Sbjct: 96 KAFSPLRKLQKLYISKN 112
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 52.7 bits (127), Expect = 5e-09
Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 11/131 (8%)
Query: 21 TKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEK 77
L LS N + +S + L++L L + +K + L L IS+
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 78 T--KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEI 135
L L+VL M NS +E + + L L + + +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF----- 490
Query: 136 KKRLPRLKKLD 146
L L+ L+
Sbjct: 491 -NSLSSLQVLN 500
Score = 42.3 bits (100), Expect = 2e-05
Identities = 27/150 (18%), Positives = 43/150 (28%), Gaps = 31/150 (20%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
+ SL + IE++ + L L F L+ L+ L + N
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNAFS 342
Query: 81 IGSLKKLKVLYMCHNSVKEWGEL-----------------NKIND-------CPVLEDLV 116
L L+ L + N + G N + LE L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402
Query: 117 FCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
F + + + E S + L L LD
Sbjct: 403 FQHSNLKQMSEFSVFL-----SLRNLIYLD 427
Score = 40.0 bits (94), Expect = 1e-04
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 21 TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
L +S L L +L + N + + + L L +S +E
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 77 K--TKGIGSLKKLKVLYMCHNS 96
+ SL L+VL M HN+
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNN 505
Score = 39.2 bits (92), Expect = 2e-04
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
KL + + + LK L+ L + N+I++F E + LE L +S N I+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 77 KTKG--IGSLKKLKV----LYMCHNSVK--EWGELNKINDCPVLEDLVFCGNPI 122
+ L ++ + L + N + + G +I L L N
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR----LHKLTLRNNFD 212
Score = 33.5 bits (77), Expect = 0.021
Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 30/128 (23%)
Query: 21 TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT 78
L LS N + + S +L++L L R I +E
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIED------------------ 69
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
SL L L + N ++ L + L+ LV + +LE
Sbjct: 70 GAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNL-ASLENFPIG-----H 122
Query: 139 LPRLKKLD 146
L LK+L+
Sbjct: 123 LKTLKELN 130
Score = 32.3 bits (74), Expect = 0.049
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTF--TGLEPLGDCLEELWISYN 73
L++S N + L L++L N I T L+ L L ++ N
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 31.5 bits (72), Expect = 0.091
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNF 74
T L LS +E++S SL L++L + N L+ L+ L S N
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTFPYKCLNSLQVLDYSLNH 529
Query: 75 IE---KTKGIGSLKKLKVLYMCHN 95
I K + L L + N
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQN 553
Score = 28.8 bits (65), Expect = 0.75
Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 22/122 (18%)
Query: 17 PNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMI------KTFTGLEPLGDCLEELW 69
P N L LS N + I G +L L L N GL LE
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA----GLEVHR 231
Query: 70 ISYNFIEKTKGI-----GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
+ + +L+ L L + L ++ +F V
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR------LAYLDYYLDDIIDLFNCLTNVS 285
Query: 125 NL 126
+
Sbjct: 286 SF 287
Score = 28.5 bits (64), Expect = 0.86
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 65 LEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ L +S+N + S +L+VL + + + E L L+ GNPI
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI 88
Query: 123 VENLEESAYRVEIKKRLPRLKKLD 146
++L A+ L L+KL
Sbjct: 89 -QSLALGAFS-----GLSSLQKLV 106
Score = 28.5 bits (64), Expect = 1.1
Identities = 20/132 (15%), Positives = 33/132 (25%), Gaps = 21/132 (15%)
Query: 22 KLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNFIE 76
+ NL + L L L I + + + + IE
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 77 KTKGIGSLKKLKVLYMCHNSVKEWGELNKI--NDCPVLEDLVFCGNPIVENLEESAYRVE 134
+ K + L + + + L+ L F N E
Sbjct: 296 RVKDFSYNFGWQHLELVNCK------FGQFPTLKLKSLKRLTFTSNKGGNAFSEVD---- 345
Query: 135 IKKRLPRLKKLD 146
LP L+ LD
Sbjct: 346 ----LPSLEFLD 353
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 52.0 bits (125), Expect = 1e-08
Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 11/131 (8%)
Query: 21 TKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEK 77
L LS N +S M L++L+ L + +K T L L ISY +
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 78 --TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEI 135
L L L M NS K+ N + L L + E + +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-EQISWGVFD--- 494
Query: 136 KKRLPRLKKLD 146
L RL+ L+
Sbjct: 495 --TLHRLQLLN 503
Score = 47.7 bits (114), Expect = 2e-07
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
+ +SL+ I+ + + K + L++ R +K F L+ L+ L ++ N +
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL--PFLKSLTLTMNKGSISFK 345
Query: 81 IGSLKKLKVLYMCHNS 96
+L L L + N+
Sbjct: 346 KVALPSLSYLDLSRNA 361
Score = 42.3 bits (100), Expect = 2e-05
Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 21 TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
L +S + + L L L + N K T + L L +S +E
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486
Query: 77 KTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVE 134
+ +L +L++L M HN++ + N L L N I E +
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRI-ETSKGI----- 539
Query: 135 IKKRLPRLKKLD 146
++ L +
Sbjct: 540 LQHFPKSLAFFN 551
Score = 38.5 bits (90), Expect = 4e-04
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 21 TKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
+ L L+ N I+ S L L L + L L++L +++N
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI----TLKKLNVAHN 138
Query: 74 FIEKTK---GIGSLKKLKVLYMCHNS 96
FI K +L L + + +N
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNY 164
Score = 31.9 bits (73), Expect = 0.059
Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 34/130 (26%)
Query: 21 TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT 78
+ LS N ++ + + +L+ L L R I +E
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI---ETIED------------------ 73
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNK--INDCPVLEDLVFCGNPIVENLEESAYRVEIK 136
K L L L + N ++ + + LE+LV + +LE
Sbjct: 74 KAWHGLHHLSNLILTGNPIQ---SFSPGSFSGLTSLENLVAVETKL-ASLESFPI----- 124
Query: 137 KRLPRLKKLD 146
+L LKKL+
Sbjct: 125 GQLITLKKLN 134
Score = 30.8 bits (70), Expect = 0.17
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 25/138 (18%)
Query: 13 KFKGPNPNTKLSLST--NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWI 70
+FK S L + L + + + +
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS-------AMSL 292
Query: 71 SYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKI--NDCPVLEDLVFCGNPIVENLEE 128
+ I+ + + K + L + L + D P L+ L N + ++
Sbjct: 293 AGVSIKYLEDVPKHFKWQSLSIIRCQ------LKQFPTLDLPFLKSLTLTMNKGSISFKK 346
Query: 129 SAYRVEIKKRLPRLKKLD 146
A LP L LD
Sbjct: 347 VA--------LPSLSYLD 356
Score = 30.0 bits (68), Expect = 0.30
Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 41/164 (25%)
Query: 21 TKLSLSTNLIEKI---SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDC-------- 64
KL+++ N I + +L L + L N I+ L
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 65 ---------------LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDC 109
L EL + NF L+ L L++ + E+ + +
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL--- 247
Query: 110 PVLEDLVFCGNPIVENLEESAYRVEIK-------KRLPRLKKLD 146
+ E + G V E L + +
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291
Score = 28.5 bits (64), Expect = 0.92
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 65 LEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ + +S+N ++ K + +L+ L + + E E + L +L+ GNPI
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPI 92
Query: 123 VENLEESAYRVEIKKRLPRLKKLD 146
++ ++ L L+ L
Sbjct: 93 -QSFSPGSFS-----GLTSLENLV 110
Score = 26.5 bits (59), Expect = 4.1
Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 12/118 (10%)
Query: 17 PNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYN 73
P N L +S N I+ I KL L L N + L + L +
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 74 FIEKTKGIGSLKKLKVLYMCHNSVKE---------WGELNKINDCPVLEDLVFCGNPI 122
+ + + + + +C ++ E ++ K + + + G I
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 50.8 bits (122), Expect = 2e-08
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
++ N +E++ L +L L + N +K L L LE + N +E+
Sbjct: 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK---LPDLPLSLESIVAGNNILEELPE 232
Query: 81 IGSLKKLKVLYMCHNSVKE 99
+ +L L +Y +N +K
Sbjct: 233 LQNLPFLTTIYADNNLLKT 251
Score = 48.8 bits (117), Expect = 9e-08
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
L +S N +EK+ L + L+I+ + N +K L L LE + N +E+
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK---LPDLPPSLEFIAAGNNQLEELPE 190
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPV-LEDLVFCGNPIVE 124
+ +L L +Y +NS L K+ D P+ LE +V N + E
Sbjct: 191 LQNLPFLTAIYADNNS------LKKLPDLPLSLESIVAGNNILEE 229
Score = 43.4 bits (103), Expect = 8e-06
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 21 TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
L S N + ++ SLK L + + L LE L +S N +EK
Sbjct: 94 ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQLEKLP 147
Query: 80 GIGSLKKLKVLYMCHNSVKE 99
+ + LK++ + +NS+K+
Sbjct: 148 ELQNSSFLKIIDVDNNSLKK 167
Score = 33.8 bits (78), Expect = 0.016
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TK 79
L+ S+N I + L L L + N + L L LE L S+N + + +
Sbjct: 300 YYLNASSNEIRSLCDL--PPSLEELNVSNNKL---IELPALPPRLERLIASFNHLAEVPE 354
Query: 80 GIGSLKKLKVLY 91
+LK+L V Y
Sbjct: 355 LPQNLKQLHVEY 366
Score = 29.2 bits (66), Expect = 0.59
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 23/119 (19%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
+L S N + ++ L + L+ L + N ++ + + +E+L ++ + E +
Sbjct: 340 ERLIASFNHLAEVPEL--PQNLKQLHVEYNPLRE---FPDIPESVEDLRMNSHLAEVPEL 394
Query: 81 IGSLKKL-----------------KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+LK+L + L M V + E LED VF +
Sbjct: 395 PQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFA-HETTDKLEDDVFEHHHH 452
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 50.0 bits (120), Expect = 4e-08
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 21/132 (15%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNFI 75
T L L N + + L++ L + L N ++ F ++ LE L+IS N +
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR----LERLYISNNRL 284
Query: 76 EK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVE 134
+ LKVL + HN + LE+L N IV L+ S
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVT-LKLST---- 337
Query: 135 IKKRLPRLKKLD 146
LK L
Sbjct: 338 ----HHTLKNLT 345
Score = 45.4 bits (108), Expect = 2e-06
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 29/145 (20%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLE------------PL 61
T LS+S N +E+I + L+ L L N + L +
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203
Query: 62 GDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121
+EEL S+N I +G +L +L + HN++ + + + P L ++ N
Sbjct: 204 PIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNE 259
Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
+ E + + ++ RL++L
Sbjct: 260 L-EKIMYHPFV-----KMQRLERLY 278
Score = 44.3 bits (105), Expect = 3e-06
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
T L L N + + + KL L++ N ++ TF L+ L +S N
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS----LQNLQLSSN 175
Query: 74 FIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ + + L + +N L+ + +E+L N I
Sbjct: 176 RLT-HVDLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSI 217
Score = 44.3 bits (105), Expect = 4e-06
Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
++S NL+ ++ +++++L N I P+ L L + +N + T
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELD---ASHNSINVVR--GPVNVELTILKLQHNNLTDTAW 243
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
+ + L + + +N +++ + LE L N + L + +P
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRL-VALNLYG------QPIP 295
Query: 141 RLKKLD 146
LK LD
Sbjct: 296 TLKVLD 301
Score = 39.3 bits (92), Expect = 2e-04
Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 18/134 (13%)
Query: 20 NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYNF 74
+ + + T + ++L +I+ + ++ +E L ++
Sbjct: 25 DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR----QVELLNLNDLQ 80
Query: 75 IE--KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
IE T ++ LYM N+++ + + P+L LV N + +L +
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDL-SSLPRGIFH 138
Query: 133 VEIKKRLPRLKKLD 146
P+L L
Sbjct: 139 -----NTPKLTTLS 147
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 50.0 bits (120), Expect = 4e-08
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 13/130 (10%)
Query: 21 TKLSLSTNLIEKISGLM--SLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
+ L+ N I + L +++ L L N I T E LE L + YNFI
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 77 KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIK 136
KG KLK L + N + G + + + N + +E++
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKL-VLIEKAL------ 233
Query: 137 KRLPRLKKLD 146
+ L+ D
Sbjct: 234 RFSQNLEHFD 243
Score = 49.6 bits (119), Expect = 5e-08
Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 27/145 (18%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPL-----------------GD 63
L+LS+N++ + L SL LR L L N ++ + G
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ 120
Query: 64 CLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121
+ ++++ N I + G +++ L + N + LE L N
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
I +++ +LK LD
Sbjct: 181 I-YDVKGQVV-------FAKLKTLD 197
Score = 48.1 bits (115), Expect = 2e-07
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMI----KTFTGLEPLGDCLEELWISYNFIE 76
L+L N I + G + KL+ L L N + F + + + N +
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG----VTWISLRNNKLV 227
Query: 77 K-TKGIGSLKKLKVLYMCHN 95
K + + L+ + N
Sbjct: 228 LIEKALRFSQNLEHFDLRGN 247
Score = 45.4 bits (108), Expect = 1e-06
Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 26/145 (17%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIE 76
++ + +++ S ++ L L N + + L P LE L +S N +
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLY 71
Query: 77 KTKGIGSLKKLKVLYMCHNSVKEWGEL----------NKINDCPV-----LEDLVFCGNP 121
+T + SL L+ L + +N V+E N I+ +++ N
Sbjct: 72 ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131
Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
I L + R++ LD
Sbjct: 132 I-TMLRDLDE-----GCRSRVQYLD 150
Score = 29.2 bits (66), Expect = 0.48
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 21 TKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK 77
T +SL N + I L + L L N T + ++ ++K
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 50.3 bits (120), Expect = 4e-08
Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 14/134 (10%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTF-TGLEPLGDCLEELWISYNFIE--- 76
L N + + + KL L L N I+ D +E L S+N ++
Sbjct: 576 GLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635
Query: 77 KTKGIGSLKKLKVLYMCHNS----VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
S+ + + +N + + N I +
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI------QKFP 689
Query: 133 VEIKKRLPRLKKLD 146
E+ + +
Sbjct: 690 TELFATGSPISTII 703
Score = 46.4 bits (110), Expect = 7e-07
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%)
Query: 20 NTKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT 78
+T++ TN I I + L KL+I+ + T D + E
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF---TYDNIAVDWEDANSDYAKQYENE 483
Query: 79 -KGIGSLKKLKVLYMCHNSVKEWGEL-NKINDCPVLEDLVFCGNPIVENLEESAYRVEIK 136
+LK L + + + +L + + D P L+ L N + + A +
Sbjct: 484 ELSWSNLKDLTDVELYNC--PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541
Query: 137 KRLPRLKKL 145
K+
Sbjct: 542 DDEDTGPKI 550
Score = 44.9 bits (106), Expect = 2e-06
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 29/144 (20%)
Query: 21 TKLSLSTNLIEKI-----------SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEE 67
L+++ N + K++I +G N ++ F L L
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 68 LWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPI 122
L +N + + G+ KL L + +N + +I +E L F N +
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQ------IEEIPEDFCAFTDQVEGLGFSHNKL 631
Query: 123 VENLEESAYRVEIKKRLPRLKKLD 146
+ + + +D
Sbjct: 632 KYIPNIFNAK-----SVYVMGSVD 650
Score = 44.9 bits (106), Expect = 3e-06
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 22/143 (15%)
Query: 21 TKLSLSTNLIEKI---SGLMSLKKLRILALGRNMIKTF--TGLEPLGDC----LEELWIS 71
L S N ++ I S+ + + N I + + D + +S
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681
Query: 72 YNFIEK--TKGIGSLKKLKVLYMCHNSVKE------WGELNKINDCPVLEDLVFCGNPIV 123
YN I+K T+ + + + + +N + + + +L + N +
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741
Query: 124 ENLEESAYRVEIKKRLPRLKKLD 146
++ LP L +D
Sbjct: 742 SLSDDFRAT-----TLPYLSNMD 759
Score = 42.9 bits (101), Expect = 1e-05
Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 26/143 (18%)
Query: 21 TKLSLSTNLIEKI---------SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELW 69
+ + LS NL+ I + L + L N + + + L +
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759
Query: 70 ISYNFIEK-TKGIGSLKKLKVLYMCHNSVKEWGELNK-----INDCPVLEDLVFCGNPIV 123
+SYN + +LK + H E + + I CP L L N I
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818
Query: 124 ENLEESAYRVEIKKRLPRLKKLD 146
++E P+L LD
Sbjct: 819 RKVDEKL--------TPQLYILD 833
Score = 26.4 bits (58), Expect = 5.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 65 LEELWISYNFIEKT--KGIGSLKKLKVLYMCHNS 96
+ L ++ + IG L +LKVL +S
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS 358
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 50.1 bits (120), Expect = 4e-08
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 11/138 (7%)
Query: 14 FKGPNPNTKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWI 70
G L LS N + + S + L++L L + +K + L L I
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 71 SYNFIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128
S+ L L+VL M NS +E + + L L + E L
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSP 487
Query: 129 SAYRVEIKKRLPRLKKLD 146
+A+ L L+ L+
Sbjct: 488 TAF-----NSLSSLQVLN 500
Score = 47.8 bits (114), Expect = 2e-07
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
L LS I+ I SL L L L N I+ F+GL L ++L
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL----QKLVAVET 110
Query: 74 FIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ + IG LK LK L + HN ++ + ++ LE L N I
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 47.0 bits (112), Expect = 5e-07
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 18/134 (13%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIK-------TFTGLEPLGDCLEELWISYN 73
+L+ ++N + L L L L RN + + G L+ L +S+N
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT----SLKYLDLSFN 383
Query: 74 FIEK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
+ + L++L+ L H+++K+ E + L L +
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIF- 441
Query: 133 VEIKKRLPRLKKLD 146
L L+ L
Sbjct: 442 ----NGLSSLEVLK 451
Score = 43.9 bits (104), Expect = 5e-06
Identities = 28/157 (17%), Positives = 44/157 (28%), Gaps = 31/157 (19%)
Query: 14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYN 73
F + SL + IE++ + L L F L+ L+ L + N
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL--KSLKRLTFTSN 335
Query: 74 FIEKTKGIGSLKKLKVLYMCHNSVKEWGEL-----------------NKINDCPV----- 111
L L+ L + N + G N +
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395
Query: 112 --LEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
LE L F + + + E S + L L LD
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVF-----LSLRNLIYLD 427
Score = 40.9 bits (96), Expect = 6e-05
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 21 TKLSLSTNLIEKI---SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISY 72
+L+++ NLI+ +L L L L N I+ L + L +S
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 73 NFIEK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDL 115
N + G +L L + +N I LE
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Score = 40.9 bits (96), Expect = 6e-05
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 14 FKGPNPNTKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELW 69
F L +S L L +L + N + + + L L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 70 ISYNFIEK-TKGI-GSLKKLKVLYMCHNS 96
+S +E+ + SL L+VL M N
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Score = 31.6 bits (72), Expect = 0.073
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRI----LALGRNMIKT-----FTGLEPLGDCLEELW 69
L LS+N I+ I L L ++ + L L N + F + L +L
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-----LHKLT 206
Query: 70 ISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKIND 108
+ NF ++ L L + + E+ +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245
Score = 30.1 bits (68), Expect = 0.24
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
T L LS +E++S SL L++L + N +K+ F L L+++W+ N
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL----TSLQKIWLHTN 528
Score = 27.4 bits (61), Expect = 2.2
Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 22/120 (18%)
Query: 17 PNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIK------TFTGLEPLGDCLEELW 69
P N L LS N + I G +L L L N GL LE
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA----GLEVHR 231
Query: 70 ISYNFIEKTKGI-----GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
+ + +L+ L L + L ++ +F V
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR------LAYLDYYLDDIIDLFNCLTNVS 285
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 49.7 bits (119), Expect = 5e-08
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYNFI 75
L+L+ + +I L L KL L L N + F GL L++LW+ + I
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL----MHLQKLWMIQSQI 243
Query: 76 EK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123
+ +L+ L + + HN++ + LE + NP
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPWN 292
Score = 49.7 bits (119), Expect = 6e-08
Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 19/134 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGR-NMIK-----TFTGLEPLGDCLEELWISY 72
+L L N IE I + LR L LG + F GL L L ++
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS----NLRYLNLAM 194
Query: 73 NFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
+ + + L KL L + N + L+ L + I + +E +A+
Sbjct: 195 CNLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQI-QVIERNAFD 252
Query: 133 VEIKKRLPRLKKLD 146
L L +++
Sbjct: 253 -----NLQSLVEIN 261
Score = 49.0 bits (117), Expect = 1e-07
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 23/136 (16%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWIS-Y 72
L L N + I + L KL+ L L N I+ F + L L +
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP----SLRRLDLGEL 170
Query: 73 NFIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESA 130
+ ++G L L+ L + +++ E+ + L++L GN + + +
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL-SAIRPGS 226
Query: 131 YRVEIKKRLPRLKKLD 146
++ L L+KL
Sbjct: 227 FQ-----GLMHLQKLW 237
Score = 48.2 bits (115), Expect = 2e-07
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 29/140 (20%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
L+L N I+ I L+ L IL L RN I+T F GL L L + N
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA----NLNTLELFDN 122
Query: 74 FIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPIVENL 126
+ L KLK L++ +N + I N P L L + +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNP------IESIPSYAFNRIPSLRRLDLGELKRLSYI 176
Query: 127 EESAYRVEIKKRLPRLKKLD 146
E A+ L L+ L+
Sbjct: 177 SEGAFE-----GLSNLRYLN 191
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 49.5 bits (118), Expect = 6e-08
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 21/132 (15%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNFI 75
T L L N + + L++ L + L N ++ F ++ LE L+IS N +
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR----LERLYISNNRL 290
Query: 76 EK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVE 134
+ LKVL + HN + LE+L N IV L+ S
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVT-LKLST---- 343
Query: 135 IKKRLPRLKKLD 146
LK L
Sbjct: 344 ----HHTLKNLT 351
Score = 44.9 bits (106), Expect = 3e-06
Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
++S NL+ ++ +++++L N I P+ L L + +N + T
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELD---ASHNSINVVR--GPVNVELTILKLQHNNLTDTAW 249
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
+ + L + + +N +++ + LE L N + L + +P
Sbjct: 250 LLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRL-VALNLYG------QPIP 301
Query: 141 RLKKLD 146
LK LD
Sbjct: 302 TLKVLD 307
Score = 44.5 bits (105), Expect = 4e-06
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
T L L N + + + KL L++ N ++ TF L+ L +S N
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS----LQNLQLSSN 181
Query: 74 FIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ + + L + +N L+ + +E+L N I
Sbjct: 182 RLT-HVDLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSI 223
Score = 43.8 bits (103), Expect = 6e-06
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 29/145 (20%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLE------------PL 61
T LS+S N +E+I + L+ L L N + L +
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209
Query: 62 GDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121
+EEL S+N I +G +L +L + HN++ + + + P L ++ N
Sbjct: 210 PIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNE 265
Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
+ E + + ++ RL++L
Sbjct: 266 L-EKIMYHPFV-----KMQRLERLY 284
Score = 37.2 bits (86), Expect = 0.001
Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 18/134 (13%)
Query: 20 NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYNF 74
+ + + T + ++L +I+ + ++ +E L ++
Sbjct: 31 DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR----QVELLNLNDLQ 86
Query: 75 IE--KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
IE T ++ LYM N+++ + + P+L LV N + +L +
Sbjct: 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDL-SSLPRGIFH 144
Query: 133 VEIKKRLPRLKKLD 146
P+L L
Sbjct: 145 -----NTPKLTTLS 153
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 48.3 bits (115), Expect = 1e-07
Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 27/145 (18%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPL-----------------GD 63
L+LS+N++ + L SL LR L L N ++ + G
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ 120
Query: 64 CLEELWISYNFIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121
+ ++++ N I G +++ L + N + LE L N
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
I +++ +LK LD
Sbjct: 181 I-YDVKGQVV-------FAKLKTLD 197
Score = 46.8 bits (111), Expect = 5e-07
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 32/148 (21%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMI-----KTFTGLEPLGDCLEELWISYN 73
++ + +++ S ++ L L N + LE L +S N
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF----TKLELLNLSSN 68
Query: 74 FIEKTKGIGSLKKLKVLYMCHNSVKEWGEL----------NKINDCPV-----LEDLVFC 118
+ +T + SL L+ L + +N V+E N I+ +++
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128
Query: 119 GNPIVENLEESAYRVEIKKRLPRLKKLD 146
N I L + R++ LD
Sbjct: 129 NNKI-TMLRDLDE-----GCRSRVQYLD 150
Score = 46.4 bits (110), Expect = 7e-07
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 13/130 (10%)
Query: 21 TKLSLSTNLIEKISGLM--SLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
+ L+ N I + L +++ L L N I T E LE L + YNFI
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 77 KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIK 136
KG KLK L + N + G + + + N + +E++
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKL-VLIEKAL------ 233
Query: 137 KRLPRLKKLD 146
+ L+ D
Sbjct: 234 RFSQNLEHFD 243
Score = 45.6 bits (108), Expect = 1e-06
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMI----KTFTGLEPLGDCLEELWISYNFIE 76
L+L N I + G + KL+ L L N + F + + + N +
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG----VTWISLRNNKLV 227
Query: 77 K-TKGIGSLKKLKVLYMCHN 95
K + + L+ + N
Sbjct: 228 LIEKALRFSQNLEHFDLRGN 247
Score = 30.6 bits (69), Expect = 0.18
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 21 TKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
T +SL N + I L + L L N T + ++ ++K
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276
Query: 80 G--IGSLKKLKVLYMCHNSVKE 99
G + + ++
Sbjct: 277 GQNEEECTVPTLGHYGAYCCED 298
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 48.2 bits (115), Expect = 2e-07
Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 19/134 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGR-NMIK-----TFTGLEPLGDCLEELWISY 72
+L L N IE I + L L LG ++ F GL L+ L +
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF----NLKYLNLGM 205
Query: 73 NFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
I+ + L L+ L M N E + L+ L + + +E +A+
Sbjct: 206 CNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQV-SLIERNAFD 263
Query: 133 VEIKKRLPRLKKLD 146
L L +L+
Sbjct: 264 -----GLASLVELN 272
Score = 46.7 bits (111), Expect = 5e-07
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNFI 75
L+L I+ + L L L L + N +F GL L++LW+ + +
Sbjct: 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS----LKKLWVMNSQV 254
Query: 76 EK--TKGIGSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPIV 123
L L L + HN+ L+ + L +L NP
Sbjct: 255 SLIERNAFDGLASLVELNLAHNN------LSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 45.1 bits (107), Expect = 2e-06
Identities = 35/160 (21%), Positives = 49/160 (30%), Gaps = 47/160 (29%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
L L N I +I L L L L N + F L L ELW+ N
Sbjct: 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK----LRELWLRNN 157
Query: 74 FIEK-------------------TKGIGS--------LKKLKVLYMCHNSVKEWGELNKI 106
IE K + L LK L + ++K ++ +
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNL 214
Query: 107 NDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
LE+L GN + ++ L LKKL
Sbjct: 215 TPLVGLEELEMSGNHF-PEIRPGSFH-----GLSSLKKLW 248
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 48.2 bits (115), Expect = 2e-07
Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 21 TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
L LS N I I L + L++L L + I T F L LE L +S N
Sbjct: 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG----SLEHLDLSDN 84
Query: 74 FIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
+ + G L LK L + N + G + + L+ L + +
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 132 RVEIKKRLPRLKKLD 146
L L +L+
Sbjct: 145 A-----GLTSLNELE 154
Score = 43.9 bits (104), Expect = 5e-06
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 20/130 (15%)
Query: 21 TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
T L +S N + +K+R L L I+ P LE L +S N +
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT--LEVLDVSNNNL--DS 445
Query: 80 GIGSLKKLKVLYMCHNSVKEWGELNKINDC---PVLEDLVFCGNPIVENLEESAYRVEIK 136
L +L+ LY+ N L + D PVL + N + +++ + +
Sbjct: 446 FSLFLPRLQELYISRNK------LKTLPDASLFPVLLVMKISRNQL-KSVPDGIFD---- 494
Query: 137 KRLPRLKKLD 146
RL L+K+
Sbjct: 495 -RLTSLQKIW 503
Score = 36.2 bits (84), Expect = 0.002
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNF 74
++++ + + + LK L L L N++ G L+ L +S N
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Query: 75 IEKTKGIG----SLKKLKVLYMCHNSVKE 99
+ + G +LK L L + N+
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHP 401
Score = 35.9 bits (83), Expect = 0.003
Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 16/135 (11%)
Query: 21 TKLSLSTNLIEKISGLM--SLKKLRILALGRNMIKTFTGLEPLG-DCLEELWISYNFI-- 75
+L + + + L+K++ + + + + LE L +S N +
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 76 ---EKTKGIGSLKKLKVLYMCHNSVKE-WGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
+ + G+ L+ L + N ++ + L L N + +S
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSC- 406
Query: 132 RVEIKKRLPRLKKLD 146
+ +++ L+
Sbjct: 407 -----QWPEKMRFLN 416
Score = 35.5 bits (82), Expect = 0.005
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 21 TKLSLSTNLIEKISG---LMSLKKLRILALGRNMI------KTFTGLEPLGDCLEELWIS 71
L+L N + + +L L+ L +G F GL L EL I
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT----SLNELEIK 156
Query: 72 YNFIEK--TKGIGSLKKLKVLYMCHNS 96
+ ++ + S++ + L + +
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSE 183
Score = 34.3 bits (79), Expect = 0.009
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYN 73
+L +S N ++ + L ++ + RN +K+ L+++W+ N
Sbjct: 454 QELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP-DGIFDRLTSLQKIWLHTN 507
Score = 28.9 bits (65), Expect = 0.59
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
Query: 65 LEELWISYNFIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKIND-----CPVLEDLVF 117
++ L +S+N I + + L+VL + + +N I LE L
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSS------RINTIEGDAFYSLGSLEHLDL 81
Query: 118 CGNPIVENLEESAYRVEIKKRLPRLKKLD 146
N + +L S + L LK L+
Sbjct: 82 SDNHL-SSLSSSWFG-----PLSSLKYLN 104
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 46.1 bits (110), Expect = 9e-07
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 21 TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
T+L L +N I+KI + + K L L L N + T LE L+EL +S N
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE----NLQELLLSNN 155
Query: 74 FIEKTK----GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEES 129
I+ K I + LK L + N +KE+ + L L + +L E
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEK 214
Query: 130 AYRVEIKKRLPRLKKLD 146
+ ++ ++ L
Sbjct: 215 ---LCLELANTSIRNLS 228
Score = 43.8 bits (104), Expect = 7e-06
Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 13/133 (9%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
L+L+ N I KI L L +L LG N I + + E+++SYN
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 77 KT--KGIGSLKKLKVLYMCHNSVKE-WGELNKINDCPVLEDLVFCGNPIVENLEESAYRV 133
+ + L+ L + ++K + L L N I N+ +
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI-ANINDDML-- 500
Query: 134 EIKKRLPRLKKLD 146
+ L +L+ LD
Sbjct: 501 ---EGLEKLEILD 510
Score = 43.5 bits (103), Expect = 8e-06
Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 24 SLSTNLIEKISGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNFIEKT 78
L +L EK+ ++ +R L+L + + TF GL+ L L +SYN +
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN--LTMLDLSYNNLNVV 263
Query: 79 --KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIK 136
L +L+ ++ +N+++ + ++ + L + +++ ++
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322
Query: 137 ---KRLPRLKKLD 146
+ L L+ L+
Sbjct: 323 FSFQWLKCLEHLN 335
Score = 42.7 bits (101), Expect = 1e-05
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 19/137 (13%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-------TFTGLEPLGDCLEELWIS 71
L++ N I I L L+ L+L + TF L L L ++
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP--LHILNLT 389
Query: 72 YNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEES 129
N I K + L L+VL + N + + + + ++ N L +
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTRN 448
Query: 130 AYRVEIKKRLPRLKKLD 146
++ +P L++L
Sbjct: 449 SFA-----LVPSLQRLM 460
Score = 40.8 bits (96), Expect = 8e-05
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 24/142 (16%)
Query: 21 TKLSLSTNLIEKI----SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNF 74
+L L ++ + S L+ L IL L N I + L LE L + +N
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNN 515
Query: 75 IEK----------TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
+ + + L L +L + N E D L+ + N +
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNL-N 573
Query: 125 NLEESAYRVEIKKRLPRLKKLD 146
L S + LK L+
Sbjct: 574 TLPASVFN-----NQVSLKSLN 590
Score = 37.3 bits (87), Expect = 0.001
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLE-----PLGDCLEEL 68
T L LS N + + L +L L N I+ + GL L +
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310
Query: 69 WISYNFIEKTKG--IGSLKKLKVLYMCHNSVKE 99
IS + K LK L+ L M N +
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Score = 33.8 bits (78), Expect = 0.013
Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 19/134 (14%)
Query: 20 NTKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
+ S + ++ L + +L L N ++ L L + +N I
Sbjct: 6 HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTIS 62
Query: 77 KT--KGIGSLKKLKVLYMCHNSVKEWGELNK--INDCPVLEDLVFCGNPIVENLEESAYR 132
K + L LKVL + HN + +L+ C L +L N I + ++ + +
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELS---QLSDKTFAFCTNLTELHLMSNSI-QKIKNNPFV 118
Query: 133 VEIKKRLPRLKKLD 146
+ L LD
Sbjct: 119 -----KQKNLITLD 127
Score = 31.5 bits (72), Expect = 0.079
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTF--TGLEPLGDCLEELWISYN 73
+ L N + + + L+ L L +N+I + P L EL + +N
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 45.8 bits (109), Expect = 1e-06
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 20/136 (14%)
Query: 21 TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNF 74
+L L+ + ++ SGL+ L L+ L L N + + + L L I N
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF----PSLTHLSIKGNT 336
Query: 75 IE---KTKGIGSLKKLKVLYMCHNSVKEWGELNK-INDCPVLEDLVFCGNPIVENLEESA 130
T + +L+ L+ L + H+ ++ N + + L+ L N +L+
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKT-- 393
Query: 131 YRVEIKKRLPRLKKLD 146
E K P+L+ LD
Sbjct: 394 ---EAFKECPQLELLD 406
Score = 45.0 bits (107), Expect = 3e-06
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 21 TKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
T L L+ I I S +L L L N + L L+ L+ I
Sbjct: 60 TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGIS 118
Query: 77 KTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ + K L+ LY+ N + +L K L+ L F N I
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAI 165
Score = 41.9 bits (99), Expect = 3e-05
Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 13/111 (11%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
L I I L + K L L LG N I E L+ L N
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK----LKVLDFQNN 163
Query: 74 FIE--KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
I + + SL++ L + N G D V + L F G
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214
Score = 41.9 bits (99), Expect = 3e-05
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNF 74
L+LS +L++ S L L+ L L N + L LE L +S+
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 75 IEK--TKGIGSLKKLKVLYMCHNS 96
+ SLK + + + HN
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNR 511
Score = 40.0 bits (94), Expect = 1e-04
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 21 TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTF--TGLEPLGDCLEELWISYNFIE 76
L S N++ I + L L L L R I + L+ L ++ N +
Sbjct: 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLI 94
Query: 77 K--TKGIGSLKKLKVLYMCHNS 96
+ K LK L+
Sbjct: 95 FMAETALSGPKALKHLFFIQTG 116
Score = 39.2 bits (92), Expect = 2e-04
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 38/158 (24%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
KL LS N E + + L L++ N + G L + L EL +S++ IE
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 77 K----------------------------TKGIGSLKKLKVLYMCHNSVKEWGELNKIND 108
T+ +L++L + +K + +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423
Query: 109 CPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
+L+ L + + + E + LP L+ L+
Sbjct: 424 LHLLKVLNLSHSLL-DISSEQLFD-----GLPALQHLN 455
Score = 32.3 bits (74), Expect = 0.055
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 16/113 (14%)
Query: 21 TKLSLSTNLIEKISGLMS-----LKKLRILALGRNMIK-----TFTGLEPLGDCLEELWI 70
L+L N K + + L +L IL L + FT L+ + + +
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK----MMNHVDL 507
Query: 71 SYNFIEK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
S+N + + S K L + N + + + + NP+
Sbjct: 508 SHNRLTSSSIEALSHLKGIYLNLASNHISII-LPSLLPILSQQRTINLRQNPL 559
Score = 26.1 bits (58), Expect = 6.5
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 65 LEELWISYNFIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
E L S+N + L L L + + + L+ LV NP+
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPL 93
Query: 123 VENLEESAYRVEIKKRLPRLKKLD 146
+ E+A LK L
Sbjct: 94 -IFMAETALS-----GPKALKHLF 111
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 45.1 bits (107), Expect = 2e-06
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
T L + I ++G+ L L L N I T L L L N +
Sbjct: 45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL 100
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
+ L KL L N + + ++ P+L L N + E
Sbjct: 101 D-VTPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLTE 141
Score = 44.7 bits (106), Expect = 2e-06
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 11/108 (10%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
L I ++ L KL L L + + L+ L I+
Sbjct: 300 YLLDCQAAGITELD-LSQNPKLVYLYLNNTELTEL----DVSHNTKLKSLSCVNAHIQDF 354
Query: 79 KGIGSLKKLKVLYMCHNSV----KEWGELNKINDCPVLEDLVFCGNPI 122
+G + L + KE N + + L GNP+
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402
Score = 42.8 bits (101), Expect = 1e-05
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
T L+ TN + K+ + L L RN + + L EL N
Sbjct: 109 TYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITK 163
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ +L L N + EL+ ++ +L L N I
Sbjct: 164 LDVTPQTQLTTLDCSFNKIT---ELD-VSQNKLLNRLNCDTNNI 203
Score = 40.1 bits (94), Expect = 1e-04
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
T L S N I ++ + K L L N I L L L S N +
Sbjct: 173 TTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKL-TE 226
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
+ L +L N + E ++ L L ++E
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTE----LDVSTLSKLTTLHCIQTDLLE 268
Score = 35.4 bits (82), Expect = 0.005
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
T S N + ++ + +L KL L + + L L K
Sbjct: 236 TYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEI----DLTHNTQLIYFQAEGCRKIKE 290
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
+ +L +L + EL+ ++ P L L + E
Sbjct: 291 LDVTHNTQLYLLDCQAAGIT---ELD-LSQNPKLVYLYLNNTELTE 332
Score = 33.9 bits (78), Expect = 0.014
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 65 LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
L L + I GI L L L N++ L+ ++ L L N +
Sbjct: 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT---TLD-LSQNTNLTYLACDSNKL 97
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 45.1 bits (107), Expect = 2e-06
Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 20/135 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
L + N + IS L L L L + + + + L L L + +
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH----GLIVLRLRHL 186
Query: 74 FIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
I L +LKVL + H + N L L + + A
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTA-VPYLAV 244
Query: 132 RVEIKKRLPRLKKLD 146
R L L+ L+
Sbjct: 245 R-----HLVYLRFLN 254
Score = 44.3 bits (105), Expect = 3e-06
Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 42/158 (26%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
+L L+ N++ + +L LR L L N +K FTGL L +L IS N
Sbjct: 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL----SNLTKLDISEN 114
Query: 74 FIEKTKGI--GSLKKLKVLYMCHNSVKE------WG---------ELNKI--------ND 108
I L LK L + N + G E + +
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 109 CPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
L L I + + +++ RL RLK L+
Sbjct: 175 LHGLIVLRLRHLNI-NAIRDYSFK-----RLYRLKVLE 206
Score = 41.6 bits (98), Expect = 3e-05
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLE 66
G N T LS++ + + + L LR L L N I L L+
Sbjct: 221 LYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR----LQ 275
Query: 67 ELWISYNFIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123
E+ + + L L+VL + N + E + + LE L+ NP+
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLETLILDSNPLA 333
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 45.3 bits (108), Expect = 2e-06
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 23 LSLSTNLIE---KISGLMSLKKLRILALGRNMI--KTFTGLEPLGDC--LEELWISYNFI 75
L++S+N ++ K+SG + L L +L L N I G C L+ L IS N I
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190
Query: 76 EKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGN 120
+ L+ L + N+ + + DC L+ L GN
Sbjct: 191 SGDVDVSRCVNLEFLDVSSNNFS--TGIPFLGDCSALQHLDISGN 233
Score = 41.0 bits (97), Expect = 6e-05
Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 18/138 (13%)
Query: 21 TKLSLSTNLIEKISG-----LMSLKKLRILALGRNMIKTFTG-LEPLGDC--LEELWISY 72
T + LS+ + L+SL L L L + G + L L +S
Sbjct: 53 TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH---INGSVSGFKCSASLTSLDLSR 109
Query: 73 NF----IEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128
N + +GS LK L + N++ G+++ LE L N I
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 129 SAYRVEIKKRLPRLKKLD 146
+ LK L
Sbjct: 170 G---WVLSDGCGELKHLA 184
Score = 39.1 bits (92), Expect = 2e-04
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 22/134 (16%)
Query: 21 TKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKTFTGLEP-LGDC--LEELWISYNF 74
L++S N KISG + L L + N F+ P LGDC L+ L IS N
Sbjct: 181 KHLAISGN---KISGDVDVSRCVNLEFLDVSSNN---FSTGIPFLGDCSALQHLDISGNK 234
Query: 75 IEKT--KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
+ + I + +LK+L + N G + + L+ L N + +
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFV--GPIPPLP-LKSLQYLSLAENKFTGEIPDF--- 288
Query: 133 VEIKKRLPRLKKLD 146
+ L LD
Sbjct: 289 --LSGACDTLTGLD 300
Score = 38.7 bits (91), Expect = 3e-04
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 21 TKLSLSTNLIE-KI-SGLMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNF 74
L L N++E +I LM +K L L L N TG P L +C L + +S N
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFND---LTGEIPSGLSNCTNLNWISLSNNR 501
Query: 75 IEKT--KGIGSLKKLKVLYMCHNS 96
+ K IG L+ L +L + +NS
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNS 525
Score = 37.2 bits (87), Expect = 0.001
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
Query: 21 TKLSLSTNLIEKISG------LMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWI 70
LSL+ N K +G + L L L N F G P G C LE L +
Sbjct: 272 QYLSLAEN---KFTGEIPDFLSGACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLAL 325
Query: 71 SYNFIE---KTKGIGSLKKLKVLYMCHNS 96
S N + ++ LKVL + N
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Score = 36.8 bits (86), Expect = 0.001
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 21 TKLSLSTNLIEKISGLM---SLKKLRILALGRNMIKTFTGLEP---LGDC--LEELWISY 72
L++S+N + G + LK L+ L+L N FTG P G C L L +S
Sbjct: 250 KLLNISSN---QFVGPIPPLPLKSLQYLSLAENK---FTGEIPDFLSGACDTLTGLDLSG 303
Query: 73 NFIEKT--KGIGSLKKLKVLYMCHNS 96
N GS L+ L + N+
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNN 329
Score = 30.3 bits (69), Expect = 0.25
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 14/108 (12%)
Query: 21 TKLSLSTNLIEKISG-----LMSLKKLRILALGRNMIKTFTGLEP--LGDCLEELWISYN 73
L LS N SG L + L L L N+ F G P + ++ ++
Sbjct: 517 AILKLSNN---SFSGNIPAELGDCRSLIWLDLNTNL---FNGTIPAAMFKQSGKIAANFI 570
Query: 74 FIEKTKGIGSLKKLKVLYMCHNSVKEWGEL-NKINDCPVLEDLVFCGN 120
++ I + K + N ++ G ++N
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Score = 29.5 bits (67), Expect = 0.43
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 10 NLYKFKGPNPNTKLSLSTNLIEKISG----------LMSLKKLRILALGRNMIKTFTGLE 59
NL +F+G LST I+ + + L + NM +G
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM---LSGYI 648
Query: 60 P--LGDC--LEELWISYNFIEKT--KGIGSLKKLKVLYMCHNS 96
P +G L L + +N I + +G L+ L +L + N
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 45.2 bits (107), Expect = 2e-06
Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 22/147 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGD--------------- 63
+ L N I I L+KL+ L L N + T + + D
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 64 -CLEELWISYNFIE---KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCG 119
+ +S N +E + + L++L + N ++ P LE L
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 120 NPIVENLEESAYRVEIKKRLPRLKKLD 146
N + + E+ ++ + L L+ L
Sbjct: 461 NML-QLAWETELCWDVFEGLSHLQVLY 486
Score = 43.3 bits (102), Expect = 1e-05
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 20/144 (13%)
Query: 14 FKGPNPNTKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK------TFTGLEPLGDCL 65
+ N +L LS N I ++ L++L++L LG F L L
Sbjct: 20 PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN----L 75
Query: 66 EELWISYNFIEK--TKGIGSLKKLKVLYMCHNSVKEWG-ELNKINDCPVLEDLVFCGNPI 122
L + + I L L L + + + + + L L N I
Sbjct: 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135
Query: 123 VENLEESAYRVEIKKRLPRLKKLD 146
++ +L LK +D
Sbjct: 136 RSLYLHPSFG-----KLNSLKSID 154
Score = 42.1 bits (99), Expect = 2e-05
Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 16/114 (14%)
Query: 21 TKLSLSTNLIEKI---SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISY 72
L L + +L LRIL LG + I F GL L EL + +
Sbjct: 51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF----HLFELRLYF 106
Query: 73 NFIEK----TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ +LK L L + N ++ L+ + F N I
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
Score = 38.2 bits (89), Expect = 5e-04
Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 20/141 (14%)
Query: 21 TKLSLSTNLIEKISG-------LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEEL 68
+L L N+++ L L++L L N + F+ L L L
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT----ALRGL 509
Query: 69 WISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128
++ N + L++L + N + + L L N + E
Sbjct: 510 SLNSNRLTVLSHNDLPANLEILDISRNQLLAPNP----DVFVSLSVLDITHNKFICECEL 565
Query: 129 SAYRVEIKKRLPRLKKLDGEV 149
S + + + ++
Sbjct: 566 STFINWLNHTNVTIAGPPADI 586
Score = 36.3 bits (84), Expect = 0.002
Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 18/122 (14%)
Query: 21 TKLSLSTNLIEKI---SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISY 72
T+L LS N I + L L+ + N I L+ L ++
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT--LSFFSLAA 183
Query: 73 NFIEKTKGIGSLK--------KLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
N + + K L++L + N N N + +
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243
Query: 125 NL 126
Sbjct: 244 GA 245
Score = 35.6 bits (82), Expect = 0.004
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 26/150 (17%)
Query: 10 NLYKFKGPNPNTKLSLSTNLIEKISG--LMSLKK--LRILALGRNMIK-----TFTGLEP 60
+ + + I+ L + +R L L + F L+
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK- 290
Query: 61 LGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKIN--DCPVLEDLV 116
L+ L ++YN I K L L+VL + +N + EL N P + +
Sbjct: 291 ---DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG---ELYSSNFYGLPKVAYID 344
Query: 117 FCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
N I +++ + K L +L+ LD
Sbjct: 345 LQKNHI-AIIQDQTF-----KFLEKLQTLD 368
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 44.2 bits (105), Expect = 3e-06
Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 20/135 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
L L ++++ L L+ L L N ++ TF L L L++ N
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN----LTHLFLHGN 163
Query: 74 FIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
I + L L L + N V + D L L N + L A
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNL-SALPTEAL 221
Query: 132 RVEIKKRLPRLKKLD 146
L L+ L
Sbjct: 222 A-----PLRALQYLR 231
Score = 38.8 bits (91), Expect = 3e-04
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
T L L N I + L L L L +N + F L L L++ N
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR----LMTLYLFAN 211
Query: 74 FIEK--TKGIGSLKKLKVLYMCHN 95
+ T+ + L+ L+ L + N
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235
Score = 38.0 bits (89), Expect = 5e-04
Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 31/141 (21%)
Query: 21 TKLSLSTNL-IEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISY 72
+L LS N + + L +L L L R ++ F GL L+ L++
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA----ALQYLYLQD 138
Query: 73 NFIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKIND-----CPVLEDLVFCGNPIVEN 125
N ++ L L L++ N ++ + + L+ L+ N + +
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGN------RISSVPERAFRGLHSLDRLLLHQNRV-AH 191
Query: 126 LEESAYRVEIKKRLPRLKKLD 146
+ A+R L RL L
Sbjct: 192 VHPHAFR-----DLGRLMTLY 207
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 44.2 bits (105), Expect = 3e-06
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK- 77
L L N I KIS L KL L L +N +K P L+EL + N I K
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVHENEITKV 136
Query: 78 TKGI-GSLKKLKVLYMCHNSVKEWG-ELNKINDCPVLEDLVFCGNPI 122
K + L ++ V+ + N +K G E L + I
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183
Score = 43.5 bits (103), Expect = 7e-06
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 37/134 (27%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
T+L L N I K+ L L L L L N I + L EL ++ N
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL----RELHLNNN 250
Query: 74 FIEK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
+ K G+ K ++V+Y+ +N++ + FC
Sbjct: 251 KLVKVPGGLADHKYIQVVYLHNNNISA------------IGSNDFCPPGYNTKK------ 292
Query: 133 VEIKKRLPRLKKLD 146
+
Sbjct: 293 -------ASYSGVS 299
Score = 37.3 bits (87), Expect = 8e-04
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 21 TKLSLSTNLIEKIS----GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIE 76
+ L TN ++ +KKL + + I T P L EL + N I
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKIT 205
Query: 77 K--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
K + L L L + NS+ + + P L +L N +
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKL 252
Score = 28.0 bits (63), Expect = 1.3
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 19/68 (27%)
Query: 21 TKLSLSTNLIEKISG--------LMSLKKLRILALGRNMIK-------TFTGLEPLGDCL 65
+ L N I I ++L N ++ TF +
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV----YVR 321
Query: 66 EELWISYN 73
+ +
Sbjct: 322 AAVQLGNY 329
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 44.3 bits (105), Expect = 4e-06
Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
L LS N I IS L L+ L L N I T F+ L L E L +SYN
Sbjct: 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL----EHLDLSYN 110
Query: 74 FIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
++ + L L L + N K GE + + L+ L ++ +
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 132 RVEIKKRLPRLKKLD 146
L L++L+
Sbjct: 171 A-----GLTFLEELE 180
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 44.1 bits (104), Expect = 5e-06
Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 28/141 (19%)
Query: 21 TKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISY 72
L LS N + ++ L L L L N + F + L L +S
Sbjct: 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP----NLRYLDLSS 97
Query: 73 NFIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPIVEN 125
N + + + L+ L+VL + +N + + D L+ L N I
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNN------HIVVVDRNAFEDMAQLQKLYLSQNQI-SR 150
Query: 126 LEESAYRVEIKKRLPRLKKLD 146
+ +LP+L LD
Sbjct: 151 FPVELIKD--GNKLPKLMLLD 169
Score = 42.9 bits (101), Expect = 1e-05
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
L LS N + IS + + LR L L N + F+ L+ LE L + N
Sbjct: 67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA----LEVLLLYNN 122
Query: 74 FIEK-TKGI-GSLKKLKVLYMCHNSVK--EWGELNKINDCPVLEDLVFCGNPI 122
I + + +L+ LY+ N + + N P L L N +
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 43.9 bits (104), Expect = 5e-06
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 14/113 (12%)
Query: 18 NPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFI 75
N + + ++ +K++I+ +G N +KTF L L L YN +
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342
Query: 76 EKT-KGIGSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPI 122
E GS KL L + +N + +I +E+L F N +
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQ------ITEIPANFCGFTEQVENLSFAHNKL 389
Score = 43.1 bits (102), Expect = 1e-05
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 21 TKLSLSTN-LIEKISGLMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNFI 75
L N L K+ S KL L L N I T + G +E L ++N +
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI---TEIPANFCGFTEQVENLSFAHNKL 389
Query: 76 E---KTKGIGSLKKLKVLYMCHN 95
+ S+ + + +N
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYN 412
Score = 38.5 bits (90), Expect = 4e-04
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 21 TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
L+L+ N I +I + +++ L+ N +K + + + SYN I
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 77 K---------TKGIGSLKKLKVLYMCHNS 96
+ + + +N
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQ 444
Score = 38.5 bits (90), Expect = 4e-04
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 21 TKLSLSTNLIEKI---------SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELW 69
+ ++L N++ +I + L + L N + + L +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 70 ISYNFIEK-TKGIGSLKKLKVLYMCHN 95
+SYN K + LK + +
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Score = 37.3 bits (87), Expect = 0.001
Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 35/157 (22%)
Query: 20 NTKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDC-------------- 64
+T++ +N I + +M L KLR +G + E +
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244
Query: 65 ------LEELWISYNFIEKT--KGIGSLKKLKVLYMCHNS-------VKEWGELNKINDC 109
L ++ + + +L +++++ + N +W L
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 110 PVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
++ + N NL+ ++K + +L L+
Sbjct: 305 EKIQIIYIGYN----NLKTFPVETSLQK-MKKLGMLE 336
Score = 26.9 bits (60), Expect = 2.7
Identities = 12/111 (10%), Positives = 30/111 (27%), Gaps = 7/111 (6%)
Query: 20 NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-T 78
++ ++ ++ K+ + ++ N I +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEES 129
K + L KL+ YM ++ N C E+ + +
Sbjct: 200 KAVMRLTKLRQFYMGNSP------FVAENICEAWENENSEYAQQYKTEDLK 244
Score = 26.5 bits (59), Expect = 4.0
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 65 LEELWISYNFIEKT--KGIGSLKKLKVLYMCHNSVK 98
+ L + IG L +L+VL + + K
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 41.9 bits (99), Expect = 2e-05
Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 25/126 (19%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMI------KTFTGLEPLGDCLEELWISY 72
L L + I +L + + + ++ +F L + + I
Sbjct: 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL----SKVTHIEIRN 89
Query: 73 NFIEKTKGIGS--------LKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
+ + L LK L + + +K + +L K+ + L NP +
Sbjct: 90 T-----RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144
Query: 125 NLEESA 130
++ +A
Sbjct: 145 SIPVNA 150
Score = 33.8 bits (78), Expect = 0.012
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 14 FKG-PNPNTKLSLSTNLIEKI-SGLMSLKKLRILALGRNMI------KTFTGLEPLGDCL 65
F+G N L L N + + KL + L +N F G+
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG---P 207
Query: 66 EELWISYNFIEK--TKGIGSLKKLKVL 90
L +S + +KG+ LK+L
Sbjct: 208 SLLDVSQTSVTALPSKGLEHLKELIAR 234
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 42.2 bits (99), Expect = 2e-05
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
T L++S N I ++ ++SL KLRIL + N I+ F + LE L +S+N
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE----LEYLDLSHN 79
Query: 74 FIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ LK L + N+ + + L+ L +
Sbjct: 80 KL-VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Score = 39.8 bits (93), Expect = 1e-04
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 21 TKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKT--FTGLEPLGDCLEELWISYNFI 75
+L +S N + K L L + N++ F L P ++ L + N I
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR---IKVLDLHSNKI 433
Query: 76 EK-TKGIGSLKKLKVLYMCHNSVK 98
+ K + L+ L+ L + N +K
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLK 457
Score = 38.7 bits (90), Expect = 3e-04
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 14 FKGPNPNTKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC---LEEL 68
+P L S NL+ L +L L L N +K + + + L++L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379
Query: 69 WISYNFIEKTKGIG---SLKKLKVLYMCHNS 96
IS N + + G K L L M N
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410
Score = 29.8 bits (67), Expect = 0.30
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTF-TGLEPLGDCLEELWISYNFIEK-T 78
L++S+N++ ++++L L N IK+ + L L+EL ++ N ++
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEA-LQELNVASNQLKSVP 460
Query: 79 KGI-GSLKKLKVLYMCHN 95
GI L L+ +++ N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478
Score = 27.9 bits (62), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 65 LEELWISYNFIEK--TKGIGSLKKLKVLYMCHN 95
L IS N+I + T I SL KL++L + HN
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHN 55
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 41.9 bits (98), Expect = 3e-05
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 12/109 (11%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TK 79
++ N + + L +L++ N + T L L + LE L +S N +E
Sbjct: 143 EYINADNNQLTMLPE--LPTSLEVLSVRNNQL---TFLPELPESLEALDVSTNLLESLPA 197
Query: 80 GIGSLKKLK----VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
+ N + E I ++ NP+
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSS 244
Score = 37.3 bits (86), Expect = 0.001
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 14/105 (13%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
L N + + L L+ L + N + L L LE + N +
Sbjct: 103 EYLDACDNRLSTLPEL--PASLKHLDVDNNQLTM---LPELPALLEYINADNNQLTMLP- 156
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPV-LEDLVFCGNPIVE 124
L+VL + +N +L + + P LE L N +
Sbjct: 157 -ELPTSLEVLSVRNN------QLTFLPELPESLEALDVSTNLLES 194
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 41.7 bits (98), Expect = 4e-05
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
+L+L+ N I KI L L L L +N + + F L+ LE L +SYN
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD----KLEVLDLSYN 357
Query: 74 FIE--KTKGIGSLKKLKVLYMCHNSVK 98
I + L LK L + N +K
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLK 384
Score = 34.0 bits (78), Expect = 0.015
Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 22/117 (18%)
Query: 21 TKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISY 72
L + + L L IL L N F GL LE L ++
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL----ANLEVLTLTQ 112
Query: 73 NFIEKTK---GI-GSLKKLKVLYMCHN---SVKEWGELNKINDCPVLEDLVFCGNPI 122
++ L L++L + N ++ + L N +
Sbjct: 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR---FHVLDLTFNKV 166
Score = 30.5 bits (69), Expect = 0.17
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 21 TKLSLSTNLIEKISGLM--SLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
L LS N I + L L+ LAL N +K+ F L L+++W+ N
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS----LQKIWLHTN 405
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 40.8 bits (96), Expect = 5e-05
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
T++ L N I+ I KKLR + L N I F GL L L + N
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS----LNSLVLYGN 90
Query: 74 FIEK-TKGI-GSLKKLKVLYMCHN 95
I + K + L L++L + N
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNAN 114
Score = 35.0 bits (81), Expect = 0.005
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
++ LS N I +++ L+ L L L N I F GL L+ L ++ N
Sbjct: 59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS----LQLLLLNAN 114
Query: 74 FIEKT-KGI-GSLKKLKVLYMCHN 95
I L L +L + N
Sbjct: 115 KINCLRVDAFQDLHNLNLLSLYDN 138
Score = 26.1 bits (58), Expect = 4.9
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 21 TKLSLSTNLIEKI-SGLM-SLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
L L+ N I + L L +L+L N ++T F+ L ++ + ++ N
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA----IQTMHLAQN 162
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 40.6 bits (95), Expect = 7e-05
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
LSLS N I ++ + L +LR+L L N I++ F + LE L +S+N
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD----LEYLDVSHN 110
Query: 74 FIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
+ + + L+ L + N + + L L
Sbjct: 111 RL-QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 32.2 bits (73), Expect = 0.055
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWIS 71
P+ T L+ + N+ G +LK+L+ L L RN +K F + + + L
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408
Query: 72 YNFIEK------TKGIGSLKKLKVLYMCHN 95
+ + + + VL + N
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Score = 31.4 bits (71), Expect = 0.094
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 39 LKKLRILALGRNMIKT--FTGLEPLGDCLEELWISYNFIEK-TKGIGSLKKLKVLYMCHN 95
+ + +L L NM+ F L P ++ L + N I K + L+ L+ L + N
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483
Query: 96 SVK 98
+K
Sbjct: 484 QLK 486
Score = 30.6 bits (69), Expect = 0.19
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 21 TKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYN 73
L L N I I + L+ L+ L + N +K+ + L L+ +W+ N
Sbjct: 453 KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS-LQYIWLHDN 507
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 39.5 bits (92), Expect = 2e-04
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TK 79
+L +S N + + L S +L+ L + N + T L L L L + N + + +
Sbjct: 224 KELIVSGNRLTSLPVLPS--ELKELMVSGNRL---TSLPMLPSGLLSLSVYRNQLTRLPE 278
Query: 80 GIGSLKKLKVLYMCHN 95
+ L + + N
Sbjct: 279 SLIHLSSETTVNLEGN 294
Score = 35.6 bits (82), Expect = 0.004
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 27/139 (19%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TK 79
L++ + + + + L + N + T L L L L +S N +
Sbjct: 43 AVLNVGESGLTTLP-DCLPAHITTLVIPDNNL---TSLPALPPELRTLEVSGNQLTSLPV 98
Query: 80 GIGSLKKLKVLYMCHNSVKE----WGEL----NKINDCPV----LEDLVFCGNPIVENLE 127
L +L + + +L N++ PV L++L N +
Sbjct: 99 LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL----- 153
Query: 128 ESAYRVEIKKRLPRLKKLD 146
+ L KL
Sbjct: 154 -----ASLPALPSELCKLW 167
Score = 34.9 bits (80), Expect = 0.008
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 25/122 (20%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
+LS+S N + + L S +L L N + T L L L+EL +S N +
Sbjct: 184 QELSVSDNQLASLPTLPS--ELYKLWAYNNRL---TSLPALPSGLKELIVSGNRLTSLP- 237
Query: 81 IGSLKKLKVLYMCHNSVKEWGEL-----------NKIND-------CPVLEDLVFCGNPI 122
+LK L + N + L N++ + GNP+
Sbjct: 238 -VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296
Query: 123 VE 124
E
Sbjct: 297 SE 298
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 38.2 bits (90), Expect = 2e-04
Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 21 TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEK 77
+KL + ++ + + L + L + +G+ +L Y + +
Sbjct: 76 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELK--AAVGELPEKSKLQEIYQELTQ 133
Query: 78 -TKGIGSLKKLKVLYMCHN 95
+G L +
Sbjct: 134 LKAAVGELPDQSKQQQIYQ 152
Score = 30.9 bits (71), Expect = 0.089
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 9/62 (14%)
Query: 39 LKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNFIEK-TKGIGSLKKLKVLYMC 93
L + L + +G+ +L Y + + +G L + L
Sbjct: 3 LPEKSKLQEIYQELTRL----KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEI 58
Query: 94 HN 95
+
Sbjct: 59 YQ 60
Score = 30.1 bits (69), Expect = 0.18
Identities = 6/59 (10%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 21 TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
+KL + ++ + + L + L + +G+ + Y +
Sbjct: 99 SKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLK--AAVGELPDQSKQQQIYQELT 155
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 38.5 bits (90), Expect = 3e-04
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 21 TKLSLSTNLIEKIS---GLMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISY 72
+L L+ N + L +LR + N I F G + E+ ++
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG----VNEILLTS 90
Query: 73 NFIEK-TKGI-GSLKKLKVLYMCHN 95
N +E + L+ LK L + N
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSN 115
Score = 36.2 bits (84), Expect = 0.002
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 14 FKGPNPNTKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLE 66
FK K++ S N I I + + L N ++ F GLE L+
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES----LK 108
Query: 67 ELWISYNFIEK-TKGI-GSLKKLKVLYMCHN 95
L + N I L +++L + N
Sbjct: 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139
Score = 27.7 bits (62), Expect = 1.4
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPL 61
L L +N I + + L +R+L+L N I T F L L
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 37.7 bits (88), Expect = 6e-04
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 14 FKGPNPNTKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLE 66
F +L L N ++ + SL KL L+LG N +++ F L L+
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS----LK 160
Query: 67 ELWISYNFIEK--TKGIGSLKKLKVLYMCHNSVK 98
EL + N +++ L +LK L + +N +K
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 29.2 bits (66), Expect = 0.47
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 21 TKLSLSTNLIEKISGLM--SLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
+L L N ++++ L +L+ L L N +K F LE L+ L + N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK----LKMLQLQEN 215
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 37.6 bits (88), Expect = 7e-04
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 29/104 (27%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGD---------- 63
L LS N + + S +L++L L R I+T + L L
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 64 ----------CLEELWISYNFIEK--TKGIGSLKKLKVLYMCHN 95
L++L + IG LK LK L + HN
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Score = 32.6 bits (75), Expect = 0.031
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 21 TKLSLSTNLIEKISGLM--SLKKLRILALGRNMIK------TFTGLEPLGDCLEELWISY 72
KL + + LK L+ L + N+I+ F+ L LE L +S
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN----LEHLDLSS 158
Query: 73 NFIEK--TKGIGSLKKLKV----LYMCHNSVKE 99
N I+ + L ++ + L + N +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 36.2 bits (84), Expect = 0.002
Identities = 30/158 (18%), Positives = 46/158 (29%), Gaps = 31/158 (19%)
Query: 21 TKLSLSTNLIEKI------SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--------LE 66
L L N + L S LR L L ++ G + D L+
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA-RGAAAVVDAFSKLENIGLQ 277
Query: 67 ELWISYNFIEKTKGIGSL--------KKLKVLYMCHNSVKEWG-------ELNKINDCPV 111
L + YN IE + +L L L + N E E+
Sbjct: 278 TLRLQYNEIEL-DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 336
Query: 112 LEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEV 149
L++L E E+ E + P + + E
Sbjct: 337 LDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKED 374
Score = 34.7 bits (80), Expect = 0.006
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 33/157 (21%)
Query: 21 TKLSLSTNLIEKI-------SGLMSLKKLRILALGRNMIKTFTGLEPLGDC------LEE 67
+ + N I GL ++L++L L N T G L L E
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKSWPNLRE 248
Query: 68 LWISYNFIEKTKGIGSL---------KKLKVLYMCHNSVKEWG-----ELNKINDCPVLE 113
L ++ + +G ++ L+ L + +N ++ + P L
Sbjct: 249 LGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK-MPDLL 306
Query: 114 DLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVL 150
L GN EE EI++ + + + L
Sbjct: 307 FLELNGNRF---SEEDDVVDEIREVFSTRGRGELDEL 340
Score = 28.5 bits (64), Expect = 0.92
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 32/133 (24%)
Query: 21 TKLSLSTNLI---------------EKISGLMSLKKLRILALGRNMIKTFTGLEPLGD-- 63
L L N + + LR + GRN + ++
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTF 183
Query: 64 ----CLEELWISYNFIEK-------TKGIGSLKKLKVLYMCHNSVKEWG--ELNK-INDC 109
L + + N I +G+ ++LKVL + N+ G L +
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243
Query: 110 PVLEDLVFCGNPI 122
P L +L +
Sbjct: 244 PNLRELGLNDCLL 256
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 35.9 bits (83), Expect = 0.002
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
T L +S N + + L L +L+ L L N +KT T LE+L ++ N
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK----LEKLSLANN 158
Query: 74 FIEK-TKGI-GSLKKLKVLYMCHNSVK 98
+ + G+ L+ L L + NS+
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 29.3 bits (66), Expect = 0.49
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 17/110 (15%)
Query: 42 LRILALGRNMIKT-----FTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNS 96
IL L N++ T L +L + + K + G+L L L + HN
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRL----TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ 88
Query: 97 VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
++ L P L L N + +L A R L L++L
Sbjct: 89 LQSLPLL--GQTLPALTVLDVSFNRL-TSLPLGALR-----GLGELQELY 130
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 35.2 bits (82), Expect = 0.004
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 18/88 (20%)
Query: 21 TKLSLSTNLIEKISG-----LMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWIS 71
L ++ +SG L +K L L N +G P + L +
Sbjct: 104 HYLYITHT---NVSGAIPDFLSQIKTLVTLDFSYNA---LSGTLPPSISSLPNLVGITFD 157
Query: 72 YNFIEKT--KGIGSLKKL-KVLYMCHNS 96
N I GS KL + + N
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNR 185
Score = 34.8 bits (81), Expect = 0.005
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 21 TKLSLSTNLIEKISG-----LMSLKKL-RILALGRNMIKTFTGLEP--LGDC-LEELWIS 71
++ N +ISG S KL + + RN TG P + L + +S
Sbjct: 152 VGITFDGN---RISGAIPDSYGSFSKLFTSMTISRNR---LTGKIPPTFANLNLAFVDLS 205
Query: 72 YNFIEKT--KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDL 115
N +E GS K + +++ NS+ +L K+ L L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSL--AFDLGKVGLSKNLNGL 249
Score = 31.0 bits (71), Expect = 0.10
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 21 TKLSLSTNLIE-KISGLMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNFI 75
T +++S N + KI + L + L RNM G G +++ ++ N +
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNM---LEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 76 EKTKG----IGSLKKLKVLYMCHN 95
+G K L L + +N
Sbjct: 234 A---FDLGKVGLSKNLNGLDLRNN 254
Score = 28.3 bits (64), Expect = 0.94
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 21 TKLSLSTNLIE---KIS-GLMSLKKLRILAL-GRNMIKTFTGLEP--LGDC--LEELWIS 71
L LS + I L +L L L + G N G P + L L+I+
Sbjct: 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYIT 109
Query: 72 YNFIEKT--KGIGSLKKLKVLYMCHNS 96
+ + + +K L L +N+
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNA 136
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 35.3 bits (82), Expect = 0.004
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 28/142 (19%)
Query: 21 TKLSLSTNLIEKI-SGLMSLKKLRILAL-GRNMIKTF-------TGLEPLGD--CLEELW 69
L+L+ N + + + + SL +LR L++ + L+ L
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189
Query: 70 ISYNFIEK-TKGIGSLKKLKVLYMCHNSVK----EWGELNKINDCPVLEDLVFCGNPIVE 124
+ + I I +L+ LK L + ++ + L K LE+L G +
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK------LEELDLRGCTALR 243
Query: 125 NLEESAYRVEIKKRLPRLKKLD 146
N LK+L
Sbjct: 244 NYPP-----IFGG-RAPLKRLI 259
Score = 34.9 bits (81), Expect = 0.005
Identities = 9/81 (11%), Positives = 21/81 (25%), Gaps = 7/81 (8%)
Query: 24 SLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC----LEELWISYNFIEK-T 78
+ N + +I +K + L D L + + +
Sbjct: 40 NADRNRWHSAWRQANSNNPQIETRTGRALKAT--ADLLEDATQPGRVALELRSVPLPQFP 97
Query: 79 KGIGSLKKLKVLYMCHNSVKE 99
L L+ + + + E
Sbjct: 98 DQAFRLSHLQHMTIDAAGLME 118
Score = 31.8 bits (73), Expect = 0.056
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 27/103 (26%)
Query: 21 TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTF-------TGLEPL----------- 61
L L I + + + +L+ L+ L + + + LE L
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 62 ----GDC--LEELWIS-YNFIEK-TKGIGSLKKLKVLYMCHNS 96
G L+ L + + + I L +L+ L +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288
Score = 28.0 bits (63), Expect = 1.2
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 13/88 (14%)
Query: 21 TKLSLS-----TNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYN 73
+L L N G LK+L + + + T + LE+L +
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILK--DCSNLLTLP--LDIHRLTQLEKLDLRGC 287
Query: 74 FIEKT--KGIGSLKKLKVLYMCHNSVKE 99
I L ++ + + +
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQ 315
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 35.3 bits (81), Expect = 0.004
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 14 FKGPNPNTKLSLSTNLIEKISGLMS---LKKLRILALGRNMIKTFTGLEPLGDCLEELWI 70
L LS N + +G S +L L L +K + L L L +
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP--KGLPAKLSVLDL 281
Query: 71 SYNFIEKTKGIGSLKKLKVLYMCHNS 96
SYN +++ L ++ L + N
Sbjct: 282 SYNRLDRNPSPDELPQVGNLSLKGNP 307
Score = 26.0 bits (57), Expect = 6.4
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMI 52
+ L LS N +++ L ++ L+L N
Sbjct: 277 SVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 34.3 bits (79), Expect = 0.009
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 26/127 (20%)
Query: 21 TKLSLSTNLI-----EKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGD------CLEEL 68
T L LS N + + GL + L+L + GLE L L+EL
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD-EGLELLAAQLDRNRQLQEL 216
Query: 69 WISYNFIEKTKGIGSL-------KKLKVLYMCHNSVKEWG-----ELNKINDCPVLEDLV 116
++YN +L L++L++ N + G +L + +
Sbjct: 217 NVAYNGAG-DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVS 275
Query: 117 FCGNPIV 123
V
Sbjct: 276 LTEGTAV 282
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 31.7 bits (72), Expect = 0.069
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWIS 71
F G + L +S I + GL +LKKLR + +K LE L L E ++
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVA-LMEASLT 254
Query: 72 YNF 74
Y
Sbjct: 255 YPS 257
Score = 27.5 bits (61), Expect = 1.9
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 28/99 (28%)
Query: 42 LRILALGRNMIKT-----FTGLEPLGDCLEELWISYNFIEKTKGIG---SLKKLKVLYMC 93
L ++ F+G L E++ IS N + + +L KL + +
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDL----EKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87
Query: 94 HNSVKEWGELNKI--------NDCPVLEDLVFCGNPIVE 124
N + + P L+ L+ I
Sbjct: 88 KA--------NNLLYINPEAFQNLPNLQYLLISNTGIKH 118
Score = 26.3 bits (58), Expect = 4.3
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 21 TKLSLS-TNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISY 72
++ + N + I+ +L L+ L + IK L I
Sbjct: 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ----KVLLDIQD 137
Query: 73 N----FIEKTKGIGSLKKLKVLYMCHNSVKE 99
N IE+ +G + +L++ N ++E
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQE 168
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 31.1 bits (71), Expect = 0.095
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 21 TKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYNF 74
T+L L N + L + K L ++ L N I T F+ + L L +SYN
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ----LLTLILSYN- 88
Query: 75 IEKTKGI-----GSLKKLKVLYMCHNSVK 98
+ + I LK L++L + N +
Sbjct: 89 --RLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 31.2 bits (71), Expect = 0.12
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 27/128 (21%)
Query: 21 TKLSLSTNLIEKI------SGLMSL-KKLRILALGRNMIKTFTGLEPLGDC-------LE 66
L+L N + L S+ + L L N++ L +
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVV 228
Query: 67 ELWISYNFIEKT------KGIGSLKKLKVLYMCHNSVKEWGE------LNKINDCPVLED 114
L + N + SLK L+ +Y+ ++ VK + + +
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288
Query: 115 LVFCGNPI 122
+ G I
Sbjct: 289 VDKNGKEI 296
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 30.7 bits (70), Expect = 0.17
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 26/107 (24%)
Query: 18 NPN-TKLSLSTNLIEKISGLMSL--------KKLRILALGRNMIKTFTGLEPLGD----- 63
N +L +S N +E +G+ L LR+L L + + + L
Sbjct: 340 NRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDV-SDSSCSSLAATLLAN 397
Query: 64 -CLEELWISYNFIEKTKGIGSLK--------KLKVLYMCHNSVKEWG 101
L EL +S N + GI L L+ L + E
Sbjct: 398 HSLRELDLSNNCLGD-AGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.21
Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 37/157 (23%)
Query: 4 EEREKENLY-------KFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILA---------- 46
E++ KE+ + K N + +L ++++ + + ++
Sbjct: 418 EKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 47 LGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKI 106
+G ++ +++ + F+E +K++ + W I
Sbjct: 477 IGHHLKNI--EHPERMTLFRMVFLDFRFLE--------QKIR------HDSTAWNASGSI 520
Query: 107 NDCPVLEDLVFCGNPIVENLEESAYRV-EIKKRLPRL 142
+ L+ L F I +N + V I LP++
Sbjct: 521 LN--TLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Score = 26.4 bits (57), Expect = 5.8
Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 53/167 (31%)
Query: 9 ENLYKFKGPNPNTKLSLSTNLIEKISGLMSLK-KLRILALGRNMIKTFTGLEPLGDCL-- 65
+ L PN ++ S+N+ +I S++ +LR L + P +CL
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRRLLKSK----------PYENCLLV 249
Query: 66 ------EELWISYNFIEK----TKGIGSLKKLKVLYMCHNSVKEWGE----------LNK 105
+ W ++N K T+ L H S+ L K
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 106 INDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLPE 152
DC +DL E+ PR + E + +
Sbjct: 310 YLDCRP-QDL----------------PREVLTTNPRRLSIIAESIRD 339
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 29.9 bits (66), Expect = 0.33
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 25 LSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC------LEELWISYNFI 75
++E L +L + + ++ T G L D L+ + + YN++
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNYL 319
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.67
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 14/37 (37%)
Query: 76 EKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVL 112
EK +LKKL+ S+K + + + P L
Sbjct: 18 EKQ----ALKKLQ------ASLKLYAD----DSAPAL 40
Score = 26.1 bits (56), Expect = 4.2
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 7 EKENLYKFKGP----NPNTKLSLSTNL-IE 31
EK+ L K + ++ +L+ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 28.1 bits (63), Expect = 1.2
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 21 TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLG--DCL---EELWISYN 73
T L L+ N ++ + L L+ L L N +++ P G D L L +++N
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL----PDGVFDKLTNLTYLNLAHN 143
Query: 74 FIEKT-KGI-GSLKKLKVLYMCHN 95
++ KG+ L L L + +N
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYN 167
>3mem_A Putative signal transduction protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 2.25A {Marinobacter
aquaeolei}
Length = 457
Score = 26.9 bits (59), Expect = 3.0
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 27 TNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELW 69
++ + +S ++ + LA+G + + + D + W
Sbjct: 238 HSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYW 280
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 25.6 bits (56), Expect = 8.0
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 33 ISGLMSLKKLRILALGRNMIKTFTGLEPLGDC---LEELWISYNFIEKTKG---IGSLKK 86
L K+LR L+ + L + L L +SY ++ + K
Sbjct: 258 SVALSGCKELRCLSGFWDA--VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315
Query: 87 LKVLYMCHN 95
L+ L++
Sbjct: 316 LQRLWVLDY 324
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase
activator prolyl isomerase PTPA, isomerase; 2.8A
{Saccharomyces cerevisiae} SCOP: a.268.1.1
Length = 310
Score = 25.3 bits (55), Expect = 10.0
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 73 NFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNK----------INDCPVLEDLVFCG 119
FI K K SL+ + + VK W ++ + ++ P+++ F
Sbjct: 239 AFINKVKSSASLRWHSPMLDDISGVKTWSKVAEGMIKMYKAEVLSKLPIMQHFYFSE 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.403
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,327,521
Number of extensions: 132437
Number of successful extensions: 957
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 268
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.0 bits)