RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1563
(152 letters)
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 64.5 bits (156), Expect = 2e-14
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 23 LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI- 81
+L + L++ +L +M T +E L L +S N + + +
Sbjct: 25 QALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMS 84
Query: 82 ---GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE-SAYRVEIKK 137
LK+L + N +K EL+K LE+L GN + + + S Y I++
Sbjct: 85 SIVQKAPNLKILNLSGNELKSERELDK-IKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143
Query: 138 RLPRLKKLDGEVLP 151
R P+L +LDG LP
Sbjct: 144 RFPKLLRLDGHELP 157
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 56.6 bits (136), Expect = 9e-12
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 23 LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG 82
L L+ + + L L + L L N ++ CLE L S N +E G+
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 83 SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRL 142
+L +L+ L +C+N +++ + + CP L L GN + +E + + + LP +
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC---QEEGIQERLAEMLPSV 119
Query: 143 KKL 145
+
Sbjct: 120 SSI 122
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 52.2 bits (124), Expect = 7e-10
Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 25 LSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSL 84
L+ LIE+ + + + R L L I L D + + S N I K G L
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62
Query: 85 KKLKVLYMCHN---------------------SVKEWGELNKINDCPVLEDLVFCGNPIV 123
++LK L + +N + EL ++ L+ L +
Sbjct: 63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122
Query: 124 ENLEESAYRVEIKKRLPRLKKLDGE 148
+ YR+ + ++P+++ LD +
Sbjct: 123 PVTNKKHYRLYVIYKVPQVRVLDFQ 147
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 53.1 bits (126), Expect = 1e-09
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
T L+L N I IS + SL KL+ L N + + + L + + L +N I
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKV---SDVSSLANLTNINWLSAGHNQISDL 366
Query: 79 KGIGSLKKLKVLYMCHN 95
+ +L ++ L +
Sbjct: 367 TPLANLTRITQLGLNDQ 383
Score = 44.2 bits (103), Expect = 1e-06
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 20 NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
K L + L ++ L R IK+ G+E L + L ++ S N +
Sbjct: 24 KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLTDIT 82
Query: 80 GIGSLKKLKVLYMCHNSVKEW 100
+ +L KL + M +N + +
Sbjct: 83 PLKNLTKLVDILMNNNQIADI 103
Score = 43.8 bits (102), Expect = 2e-06
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 32/146 (21%)
Query: 22 KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLG------------------- 62
L L+ N I ++ L L KL L LG N I + L L
Sbjct: 245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304
Query: 63 --DCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGN 120
L L + +N I + SL KL+ L+ +N V +++ + + + L N
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS---DVSSLANLTNINWLSAGHN 361
Query: 121 PIVENLEESAYRVEIKKRLPRLKKLD 146
I + + L R+ +L
Sbjct: 362 QISDLTPLA--------NLTRITQLG 379
Score = 38.8 bits (89), Expect = 1e-04
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 38 SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSV 97
+L + LG+ + L + L I+ G+ L L + +N +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 78
Query: 98 KEWGELNKINDCPVLEDLVFC 118
++ + + L D++
Sbjct: 79 T---DITPLKNLTKLVDILMN 96
Score = 38.8 bits (89), Expect = 1e-04
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 16/128 (12%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
+LSL+ N ++ I L SL L L L N I + L PL L EL + N I
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQI---SNLAPLSGLTKLTELKLGANQISNI 278
Query: 79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
+ L L L + N +++ + I++ L L N I + S
Sbjct: 279 SPLAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISPVS--------S 327
Query: 139 LPRLKKLD 146
L +L++L
Sbjct: 328 LTKLQRLF 335
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 48.1 bits (113), Expect = 4e-08
Identities = 69/132 (52%), Positives = 86/132 (65%), Gaps = 4/132 (3%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
L+LSTN IEKIS L ++ LRIL+LGRN+IK L+ + D LEELWISYN I G
Sbjct: 51 KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110
Query: 81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV----ENLEESAYRVEIK 136
I L L+VLYM +N + WGE++K+ LEDL+ GNP+ EN S YR+E+
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170
Query: 137 KRLPRLKKLDGE 148
KRLP LKKLDG
Sbjct: 171 KRLPNLKKLDGM 182
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 38.8 bits (89), Expect = 8e-05
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 22 KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
K +L + L + + + IK+ G++ L + + +L+++ N + K +
Sbjct: 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLNGNKLTDIKPL 86
Query: 82 GSLKKLKVLYMCHNSVKEW 100
+LK L L++ N VK+
Sbjct: 87 ANLKNLGWLFLDENKVKDL 105
Score = 32.3 bits (72), Expect = 0.015
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 50 NMIKTFTGLEPLGDC--LEELWISYNFIEKTKGIGSLKKLKVLYM 92
+ + PL L+ L++S N I + + LK L VL +
Sbjct: 163 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 28.8 bits (63), Expect = 0.19
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILAL 47
L LS N I + L LK L +L L
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 28.8 bits (63), Expect = 0.24
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 30 IEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWIS 71
I I L L KL+ L L +N I L L + L+ L +
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKN-LDVLELF 208
Score = 24.2 bits (51), Expect = 8.1
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 69 WISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDL 115
+ N I + L KL+ LY+ N + +L + L+ L
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVL 205
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 37.9 bits (86), Expect = 2e-04
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TK 79
+L++S N + ++ +L L N + + L L++L + YN + +
Sbjct: 287 EELNVSNNKLIELPA--LPPRLERLIASFNHLAE---VPELPQNLKQLHVEYNPLREFPD 341
Query: 80 GIGSLKKLKV 89
S++ L++
Sbjct: 342 IPESVEDLRM 351
Score = 29.0 bits (63), Expect = 0.22
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 65 LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
LEEL +S N + + +L+ L N + E EL L+ L NP+ E
Sbjct: 286 LEELNVSNNKL--IELPALPPRLERLIASFNHLAEVPEL-----PQNLKQLHVEYNPLRE 338
Score = 26.7 bits (57), Expect = 1.4
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 40 KKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TKGIGSLKKLKVLYMCHNSVK 98
++ L L + + L L LE L S N + + + SLK L V ++
Sbjct: 38 RQAHELELNNLGLSS---LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 99 EWGELNKINDC 109
+ L +
Sbjct: 95 DLPPLLEYLGV 105
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 37.0 bits (84), Expect = 3e-04
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 39 LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVK 98
L + LG+ + L D + L I+ G+ L L + +N +
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 75
Query: 99 EWGELNKINDC 109
+ L +
Sbjct: 76 DITPLKNLTKL 86
Score = 35.0 bits (79), Expect = 0.001
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 22 KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
K L + L ++ L R IK+ G+E L + L ++ S N + +
Sbjct: 22 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLTDITPL 80
Query: 82 GSLKKLKVLYMCHNSVKEW 100
+L KL + M +N + +
Sbjct: 81 KNLTKLVDILMNNNQIADI 99
Score = 31.9 bits (71), Expect = 0.018
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 55 FTGLEPLGDC--LEELWISYNFIEKTKGIGSLKKLKVL 90
T L+PL + LE L IS N + + L L+ L
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
Score = 25.8 bits (55), Expect = 2.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRIL 45
+L +S+N + IS L L L L
Sbjct: 175 ERLDISSNKVSDISVLAKLTNLESL 199
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 35.0 bits (79), Expect = 0.002
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 36 LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKTKGIGSLKKLKVLYMC 93
L +L KL L N I + + PL L E+ + N I + + L ++ +
Sbjct: 169 LANLSKLTTLKADDNKI---SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225
Query: 94 H 94
+
Sbjct: 226 N 226
Score = 30.8 bits (68), Expect = 0.045
Identities = 14/54 (25%), Positives = 17/54 (31%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNF 74
T LS + I G+ L L L L N I L+ L E
Sbjct: 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97
Score = 27.7 bits (60), Expect = 0.49
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 21 TKLSLSTNLIEKISGLMSLKKLRILAL 47
++ L N I +S L + L I+ L
Sbjct: 198 IEVHLKNNQISDVSPLANTSNLFIVTL 224
>d2ixna1 a.268.1.1 (A:3-299) Serine/threonine-protein phosphatase 2A
regulatory subunit B', PTPA {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 297
Score = 26.0 bits (57), Expect = 1.9
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 73 NFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNK----------INDCPVLEDLVFC 118
FI K K SL+ + + VK W ++ + ++ P+++ F
Sbjct: 237 AFINKVKSSASLRWHSPMLDDISGVKTWSKVAEGMIKMYKAEVLSKLPIMQHFYFS 292
>d1u9da_ d.80.1.5 (A:) Hypothetical protein VC0714 {Vibrio
cholerae [TaxId: 666]}
Length = 122
Score = 24.0 bits (52), Expect = 6.9
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 3 GEEREKENLY---------KFKGPNPNTKLSLSTNLIEKISGLMSLKK 41
G + ENLY +F+ + SL L+ ++S L+S +
Sbjct: 1 GVDLGTENLYFSSNAMPHLRFRAVEAHIVESLVPTLLNELSSLLSTAR 48
>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain
{Clostridium perfringens [TaxId: 1502]}
Length = 317
Score = 24.1 bits (52), Expect = 8.2
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 97 VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
VK G++ + P + +V N + AY + +
Sbjct: 141 VKAKGDVKPLITVP----TEYDTGAMVSNGQPRAYTRIFAETVD 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.138 0.403
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,337
Number of extensions: 27486
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 32
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.4 bits)