Query psy15631
Match_columns 213
No_of_seqs 111 out of 237
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 17:39:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i11_A Transcription factor SO 98.7 5.2E-09 1.8E-13 74.0 2.8 31 2-32 50-80 (81)
2 3u2b_C Transcription factor SO 98.6 1.4E-08 4.8E-13 70.9 2.6 32 2-33 48-79 (79)
3 1j46_A SRY, sex-determining re 98.6 3.1E-08 1.1E-12 70.9 3.7 35 2-36 50-84 (85)
4 3f27_D Transcription factor SO 98.6 2.4E-08 8.3E-13 70.5 2.7 32 2-33 52-83 (83)
5 1gt0_D Transcription factor SO 98.5 5.5E-08 1.9E-12 68.4 3.2 33 2-34 48-80 (80)
6 2lef_A LEF-1 HMG, protein (lym 98.2 8.5E-07 2.9E-11 63.4 3.6 33 2-34 48-80 (86)
7 1hry_A Human SRY; DNA, DNA-bin 98.1 1.4E-06 4.8E-11 60.5 2.2 27 2-28 50-76 (76)
8 1wz6_A HMG-box transcription f 98.0 1.8E-06 6.2E-11 61.0 1.9 29 2-30 53-81 (82)
9 1k99_A Upstream binding factor 97.4 8.1E-05 2.8E-09 55.0 2.6 30 2-31 56-92 (99)
10 2gzk_A Sex-determining region 97.0 0.00034 1.2E-08 54.3 2.9 33 2-34 50-82 (159)
11 4a3n_A Transcription factor SO 96.8 0.00044 1.5E-08 46.8 1.9 24 2-25 48-71 (71)
12 1hme_A High mobility group pro 95.4 0.0075 2.6E-07 41.6 2.2 25 2-26 52-76 (77)
13 2co9_A Thymus high mobility gr 95.3 0.0031 1.1E-07 46.5 0.2 33 2-34 63-95 (102)
14 2crj_A SWI/SNF-related matrix- 95.1 0.0021 7.2E-08 46.4 -1.4 31 2-32 53-83 (92)
15 2cs1_A PMS1 protein homolog 1; 94.0 0.009 3.1E-07 43.0 -0.2 31 2-32 53-83 (92)
16 1wxl_A Single-strand recogniti 93.6 0.026 9E-07 38.8 1.6 24 2-25 47-70 (73)
17 1aab_A High mobility group pro 92.5 0.06 2E-06 37.7 2.2 24 2-25 55-78 (83)
18 3nm9_A HMG-D, high mobility gr 89.6 0.06 2E-06 36.9 -0.2 24 2-25 47-70 (73)
19 1v63_A Nucleolar transcription 89.1 0.052 1.8E-06 40.2 -0.8 25 2-26 52-76 (101)
20 1ckt_A High mobility group 1 p 88.8 0.22 7.7E-06 33.4 2.2 23 2-24 49-71 (71)
21 1v64_A Nucleolar transcription 83.8 0.15 5.1E-06 38.2 -0.8 26 2-27 59-84 (108)
22 2cto_A Novel protein; high mob 82.2 1.4 4.9E-05 32.6 4.0 19 2-20 57-75 (93)
23 2yrq_A High mobility group pro 79.4 0.55 1.9E-05 36.8 0.9 25 2-26 63-87 (173)
24 2d7l_A WD repeat and HMG-box D 75.1 0.33 1.1E-05 34.8 -1.3 27 2-31 52-78 (81)
25 3fgh_A Transcription factor A, 72.2 0.78 2.7E-05 30.7 0.0 23 2-24 44-66 (67)
26 3tq6_A Transcription factor A, 58.2 1.5 5.2E-05 36.1 -0.8 27 2-28 156-182 (214)
27 3tmm_A Transcription factor A, 47.8 2.8 9.6E-05 35.0 -0.8 24 2-25 87-110 (238)
28 1l8y_A Upstream binding factor 47.6 5.4 0.00018 29.8 0.8 24 2-25 49-72 (91)
29 3tq6_A Transcription factor A, 45.3 3.2 0.00011 34.1 -0.8 24 2-25 55-78 (214)
30 8tfv_A Protein (thanatin); bac 30.9 11 0.00038 21.9 0.1 8 206-213 3-10 (21)
31 2dt7_A Splicing factor 3A subu 22.3 72 0.0025 20.3 2.8 20 5-25 14-33 (38)
No 1
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.71 E-value=5.2e-09 Score=74.00 Aligned_cols=31 Identities=48% Similarity=0.963 Sum_probs=22.5
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKP 32 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~ 32 (213)
||++|+++|++++++|+++||||+|+||||+
T Consensus 50 eK~~y~~~A~~~k~~~~~~~p~Yky~pr~~~ 80 (81)
T 1i11_A 50 EKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 80 (81)
T ss_dssp GGHHHHHHHHHHHHHHHTTCSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeeccCCCC
Confidence 7999999999999999999999999999875
No 2
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=98.61 E-value=1.4e-08 Score=70.95 Aligned_cols=32 Identities=66% Similarity=1.111 Sum_probs=28.3
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPK 33 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~k 33 (213)
||.+|.++|++++++|.++||+|+|+|||+.|
T Consensus 48 eK~~y~~~A~~~k~~y~~~~p~Yky~Prk~~k 79 (79)
T 3u2b_C 48 DKIPFIQEAERLRLKHMADYPDYKYRPRKKVK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCCCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCC
Confidence 68999999999999999999999999999865
No 3
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=98.58 E-value=3.1e-08 Score=70.92 Aligned_cols=35 Identities=57% Similarity=0.962 Sum_probs=32.8
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTPG 36 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~k~~~ 36 (213)
||.+|.++|++++++|.++||+|+|+|||+++...
T Consensus 50 eK~~y~~~A~~~k~~y~~~~~~Yk~~prr~~~~~~ 84 (85)
T 1j46_A 50 EKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLP 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCcccccCCCCcccccc
Confidence 68999999999999999999999999999998754
No 4
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=98.56 E-value=2.4e-08 Score=70.47 Aligned_cols=32 Identities=66% Similarity=1.311 Sum_probs=28.3
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPK 33 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~k 33 (213)
||.+|.++|++++++|.+++|+|+|+||||++
T Consensus 52 eK~~y~~~A~~~k~~y~~~~~~Yky~P~~kk~ 83 (83)
T 3f27_D 52 EKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeeCCccCCC
Confidence 68999999999999999999999999999875
No 5
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=98.50 E-value=5.5e-08 Score=68.40 Aligned_cols=33 Identities=94% Similarity=1.487 Sum_probs=30.9
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKT 34 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~k~ 34 (213)
||.+|.++|++++++|.+++|+|+|+|||++|+
T Consensus 48 eK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~~k~ 80 (80)
T 1gt0_D 48 EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHCcccccCCCCCCCC
Confidence 689999999999999999999999999999874
No 6
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.20 E-value=8.5e-07 Score=63.36 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=29.9
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKT 34 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~k~ 34 (213)
||.+|.++|++++++|+++||+|+|+|+.++++
T Consensus 48 eK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~~~k 80 (86)
T 2lef_A 48 EQAKYYELARKERQLHMQLYPGWSARDNYGKKK 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCSCSSTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCCCCCCCCc
Confidence 689999999999999999999999999966543
No 7
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=98.06 E-value=1.4e-06 Score=60.47 Aligned_cols=27 Identities=59% Similarity=1.104 Sum_probs=25.3
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRP 28 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrP 28 (213)
||++|.++|+++|++|+++||+|||+|
T Consensus 50 eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 50 EKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 689999999999999999999999998
No 8
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=98.00 E-value=1.8e-06 Score=60.98 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=28.1
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRR 30 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRR 30 (213)
||++|.++|++++++|.+++|+|+|+|||
T Consensus 53 eK~~y~~~A~~~k~~y~~~~~~yk~~p~~ 81 (82)
T 1wz6_A 53 EKQKYTDMAKEYKDAFMKANPGYRSGPSS 81 (82)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSSCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCCCC
Confidence 68999999999999999999999999997
No 9
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.37 E-value=8.1e-05 Score=55.03 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=27.8
Q ss_pred CcchhHHHHHHHHHH-------HHhhCCCCcccCCCC
Q psy15631 2 EKRPFIDEAKRLRAM-------HMKEHPDYKYRPRRK 31 (213)
Q Consensus 2 EK~PyideAkrLKa~-------H~k~YPdYKYrPRRK 31 (213)
||++|.++|++++++ |.++||||+|+||+-
T Consensus 56 eK~~Y~~~A~~~k~~Y~~e~~~y~~~~P~~~~~~~~~ 92 (99)
T 1k99_A 56 KKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKL 92 (99)
T ss_dssp THHHHHHHHHHHHHHHHHHHGGGGGCCCCCSCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCccc
Confidence 799999999999999 999999999999864
No 10
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.00 E-value=0.00034 Score=54.29 Aligned_cols=33 Identities=48% Similarity=0.843 Sum_probs=29.9
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKT 34 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~k~ 34 (213)
||.+|.++|++++++|.+++++|+|++|++++.
T Consensus 50 eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~kk~ 82 (159)
T 2gzk_A 50 EKWPFFQEAQKLQAMHREKYPNYKYRKGETKKK 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCCCCCCGGG
T ss_pred HhccHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 689999999999999999999999999876544
No 11
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=96.81 E-value=0.00044 Score=46.76 Aligned_cols=24 Identities=67% Similarity=1.288 Sum_probs=20.4
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYK 25 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYK 25 (213)
||.+|.++|++++++|.+++|+||
T Consensus 48 eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 48 EKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHCcCcC
Confidence 689999999999999999999996
No 12
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=95.37 E-value=0.0075 Score=41.56 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=23.7
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKY 26 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKY 26 (213)
||.+|.++|++++++|.+++++|+.
T Consensus 52 eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 52 DKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp GSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999974
No 13
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.35 E-value=0.0031 Score=46.49 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=29.7
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKT 34 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~k~ 34 (213)
||++|.++|++++++|.+++++|+|+...+...
T Consensus 63 eK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~~~~~ 95 (102)
T 2co9_A 63 QKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYT 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 689999999999999999999999998876544
No 14
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=95.08 E-value=0.0021 Score=46.37 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=27.9
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKP 32 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~ 32 (213)
||++|.++|++++++|.+++++|++++..+.
T Consensus 53 eK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~~~ 83 (92)
T 2crj_A 53 EKQRYLDEAEKEKQQYLKELWAYQQSEAYKV 83 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 6899999999999999999999998876543
No 15
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.99 E-value=0.009 Score=43.02 Aligned_cols=31 Identities=10% Similarity=-0.029 Sum_probs=27.1
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKP 32 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK~ 32 (213)
||++|.++|+++|++|.+++++|+++..++.
T Consensus 53 eK~~y~~~A~~~k~~y~~e~~~y~~~~~~~~ 83 (92)
T 2cs1_A 53 EKLKYEEKATKDLERYNSQMKRAIEQESQMS 83 (92)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHTSTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6899999999999999999999997754443
No 16
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=93.60 E-value=0.026 Score=38.76 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=23.0
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYK 25 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYK 25 (213)
||.+|.++|+++|++|.+++++|+
T Consensus 47 eK~~y~~~A~~~k~~y~~e~~~Y~ 70 (73)
T 1wxl_A 47 DKSKWEDAAAKDKQRYHDEMRNYK 70 (73)
T ss_dssp THHHHHHHHHHHHHHHHTTTGGGT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999996
No 17
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=92.53 E-value=0.06 Score=37.67 Aligned_cols=24 Identities=38% Similarity=0.314 Sum_probs=23.0
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYK 25 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYK 25 (213)
||.+|.++|++++++|.+++++|+
T Consensus 55 eK~~y~~~A~~~k~~y~~e~~~y~ 78 (83)
T 1aab_A 55 EKGKFEDMAKADKARYEREMKTYI 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999995
No 18
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=89.64 E-value=0.06 Score=36.94 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=22.3
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYK 25 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYK 25 (213)
+|++|.++|++++++|.+++++|+
T Consensus 47 ~K~~y~~~A~~~k~~y~~~~~~Y~ 70 (73)
T 3nm9_A 47 DKSEWEAKAAKAKDDYDRAVKEFE 70 (73)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999996
No 19
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=89.09 E-value=0.052 Score=40.18 Aligned_cols=25 Identities=8% Similarity=-0.051 Sum_probs=23.3
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKY 26 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKY 26 (213)
||+||.++|+++|++|.+++++|+-
T Consensus 52 eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 76 (101)
T 1v63_A 52 QKEHYKKLAEEQQRQYKVHLDLWVK 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999973
No 20
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=88.75 E-value=0.22 Score=33.43 Aligned_cols=23 Identities=39% Similarity=0.358 Sum_probs=21.3
Q ss_pred CcchhHHHHHHHHHHHHhhCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDY 24 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdY 24 (213)
||.+|.++|+++|++|.++...|
T Consensus 49 eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 49 EKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999988776
No 21
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=83.76 E-value=0.15 Score=38.19 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=23.9
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCccc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYR 27 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYr 27 (213)
||.+|.++|++++++|.+++++|+-+
T Consensus 59 eK~~Y~~~A~~~k~~Y~~e~~~Y~~~ 84 (108)
T 1v64_A 59 EKDAYHKKCDQKKKDYEVELLRFLES 84 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999753
No 22
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.21 E-value=1.4 Score=32.63 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=17.5
Q ss_pred CcchhHHHHHHHHHHHHhh
Q psy15631 2 EKRPFIDEAKRLRAMHMKE 20 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~ 20 (213)
||+||.++|+++|++|.++
T Consensus 57 EK~pYe~~A~~~K~~y~kd 75 (93)
T 2cto_A 57 EKEKYAEMAREWRAAQGKD 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999776
No 23
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.41 E-value=0.55 Score=36.79 Aligned_cols=25 Identities=36% Similarity=0.260 Sum_probs=23.4
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKY 26 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKY 26 (213)
||.+|+++|++++++|.+++++|+-
T Consensus 63 eK~~y~~~A~~~k~~y~~e~~~y~~ 87 (173)
T 2yrq_A 63 EKGKFEDMAKADKARYEREMKTYIP 87 (173)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 6899999999999999999999974
No 24
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.14 E-value=0.33 Score=34.79 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=21.7
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRK 31 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrPRRK 31 (213)
||+||.++|++.+ .+++.+||+|.|.+
T Consensus 52 eK~~y~~~A~~d~---~~~~~e~kkRkr~~ 78 (81)
T 2d7l_A 52 ERKVWANKAKGET---ASEGTEAKKRKSGP 78 (81)
T ss_dssp HHHHHHHHTTSSS---SSSCCCCGGGCCCS
T ss_pred HHHHHHHHHHHHh---hhhhhhhhhccccc
Confidence 6899999999885 46789998777654
No 25
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=72.17 E-value=0.78 Score=30.66 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=19.2
Q ss_pred CcchhHHHHHHHHHHHHhhCCCC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDY 24 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdY 24 (213)
||.+|.++|+++++++.++...|
T Consensus 44 eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 44 EKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999998765443
No 26
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=58.20 E-value=1.5 Score=36.06 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=24.5
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCcccC
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYKYRP 28 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYKYrP 28 (213)
||.||.++|+++++++.++..+|+.+-
T Consensus 156 eK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 182 (214)
T 3tq6_A 156 EKELYIQHAKEDETRYHNEMKSWEEQM 182 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999997544
No 27
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=47.81 E-value=2.8 Score=34.98 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=22.3
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYK 25 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYK 25 (213)
||.+|.++|++++++|.+++.+|+
T Consensus 87 EK~~y~~~A~~~k~~y~~e~~~y~ 110 (238)
T 3tmm_A 87 KKKIYQDAYRAEWQVYKEEISRFK 110 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999884
No 28
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=47.57 E-value=5.4 Score=29.77 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=22.6
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYK 25 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYK 25 (213)
||.||.++|+++|++..++--.|+
T Consensus 49 eK~pye~kA~~dK~rYekEm~~Y~ 72 (91)
T 1l8y_A 49 EKLMWIKKAAEDQKRYERELSEMR 72 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999995
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=45.34 E-value=3.2 Score=34.08 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=22.3
Q ss_pred CcchhHHHHHHHHHHHHhhCCCCc
Q psy15631 2 EKRPFIDEAKRLRAMHMKEHPDYK 25 (213)
Q Consensus 2 EK~PyideAkrLKa~H~k~YPdYK 25 (213)
||.+|.++|+++++++.+++.+|+
T Consensus 55 EK~~y~~~A~~~k~~y~~e~~~y~ 78 (214)
T 3tq6_A 55 KKKIYQDAYRAEWQVYKEEISRFK 78 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhc
Confidence 689999999999999999999884
No 30
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=30.88 E-value=11 Score=21.90 Aligned_cols=8 Identities=63% Similarity=1.618 Sum_probs=6.7
Q ss_pred cCCccccC
Q psy15631 206 RRPVPVIY 213 (213)
Q Consensus 206 rrpv~vi~ 213 (213)
..|||+||
T Consensus 3 kkpvpiiy 10 (21)
T 8tfv_A 3 KKPVPIIY 10 (26)
T ss_dssp CCCCCCEE
T ss_pred CCcccEEE
Confidence 57999997
No 31
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.29 E-value=72 Score=20.33 Aligned_cols=20 Identities=25% Similarity=0.665 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHhhCCCCc
Q psy15631 5 PFIDEAKRLRAMHMKEHPDYK 25 (213)
Q Consensus 5 PyideAkrLKa~H~k~YPdYK 25 (213)
-|+++-+++|+-| ++||+-.
T Consensus 14 ~FY~rlk~Ike~H-rr~P~~~ 33 (38)
T 2dt7_A 14 EFYNRLKQIKEFH-RKHPNEI 33 (38)
T ss_dssp HHHHHHHHHHHHH-HSCCSSC
T ss_pred HHHHHHHHHHHHH-HhCCCcc
Confidence 4788999999999 7888753
Done!