RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15631
(213 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 61.4 bits (149), Expect = 2e-13
Identities = 31/33 (93%), Positives = 32/33 (96%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKT 34
EKRPFIDEAKRLRA+HMKEHPDYKYRPRRK KT
Sbjct: 48 EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 80
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 56.4 bits (136), Expect = 2e-11
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTP 35
EK PF EA++L+AMH +++P+YKYRPRRK K
Sbjct: 50 EKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKML 83
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 53.3 bits (128), Expect = 2e-10
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTP 35
E+ + + A++ R +HM+ +P + R K
Sbjct: 48 EQAKYYELARKERQLHMQLYPGWSARDNYGKKKK 81
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 42.1 bits (99), Expect = 2e-06
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDY 24
EK+P+ +E RL H++++PDY
Sbjct: 48 EKQPYYEEQARLSKQHLEKYPDY 70
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 41.8 bits (98), Expect = 3e-06
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRK 31
+K+P+ +A +L+ + K+ Y+ + +
Sbjct: 48 DKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 77
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 38.8 bits (90), Expect = 5e-05
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPK 33
EK + + + + + E + + +
Sbjct: 59 EKDAYHKKCDQKKKDYEVELLRFLESLPEEEQ 90
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 38.0 bits (88), Expect = 8e-05
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 2 EKRPFIDEAKRLRAMHMKE-------HPDYKYRPRR 30
+K +I + +R + + HPD ++
Sbjct: 56 KKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 91
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 37.1 bits (86), Expect = 1e-04
Identities = 2/25 (8%), Positives = 12/25 (48%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDYKY 26
+K + +A + + + + +++
Sbjct: 47 DKSEWEAKAAKAKDDYDRAVKEFEA 71
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 34.9 bits (80), Expect = 0.001
Identities = 2/32 (6%), Positives = 10/32 (31%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPK 33
+K + A+ + + + + +
Sbjct: 52 QKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDR 83
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 34.1 bits (78), Expect = 0.001
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDY 24
EK F D AK +A + +E Y
Sbjct: 49 EKGKFEDMAKADKARYEREMKTY 71
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 33.7 bits (77), Expect = 0.003
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 2 EKRPFIDEAKRLRAMHMKEHPDYKYRP 28
EK+P+ +A+ + + E Y
Sbjct: 66 EKQPYEAKAQADKKRYESEKELYNATL 92
>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum
[TaxId: 6182]}
Length = 140
Score = 25.7 bits (56), Expect = 2.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 55 ASNAFPSFPLPPYFANHGGGSHPHPLD 81
S+ + ++PL + A GGG HP D
Sbjct: 113 KSSKYIAWPLQGWQATFGGGDHPPKSD 139
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 24.9 bits (54), Expect = 3.4
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 2 EKRPFIDEAKRLRAMHMKE 20
+K + L+A ++
Sbjct: 66 KKAKYKAREAALKAQSERK 84
>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId:
5507]}
Length = 400
Score = 25.9 bits (57), Expect = 3.6
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 36 GQSIPNNKSPNQGAPAPTSASNAFPSFPLPPYFANHGGGSH 76
+ I + G P ++ + + + GG
Sbjct: 291 NKVIESAVVNISGPPKINFINDKYCAATGANEYMRLGGTKQ 331
>d1wd3a1 b.29.1.21 (A:19-337) Alpha-L-arabinofuranosidase B,
N-terminal domain {Aspergillus kawachii [TaxId: 40384]}
Length = 319
Score = 25.9 bits (57), Expect = 3.9
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 19/88 (21%)
Query: 67 YFAN-----HGGGSHPHPLDSL--------SAAYPPMNMPHYFGSPFDAMNFSKLVQGQT 113
Y N +G G P + + Y + F + V+G
Sbjct: 181 YLGNSTTWGYGAGDGPWIMVDMENNLFSGADEGYNSGDPS--ISYRF----VTAAVKGGA 234
Query: 114 SQADTKSSNAAAAVVSSFYSSLYPSVTS 141
+ + +NAA+ +S++YS P +
Sbjct: 235 DKWAIRGANAASGSLSTYYSGARPDYSG 262
>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2
{Escherichia coli [TaxId: 562]}
Length = 95
Score = 24.8 bits (54), Expect = 4.1
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 76 HPHPLDSLSAA 86
PHPL++L+A
Sbjct: 2 RPHPLNALTAD 12
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.125 0.369
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 754,086
Number of extensions: 30993
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 22
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)