RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15632
(339 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 233 bits (596), Expect = 9e-73
Identities = 92/215 (42%), Positives = 117/215 (54%), Gaps = 21/215 (9%)
Query: 106 PEVNIDKLGKVRGRVTMSHWTKRLIYSFQGIPYAIPPVGKMRFQGVGISLPTWQGVGREF 165
P V GKVRG +Y+F GIPYA PPVG++RF+ W GV +
Sbjct: 1 PVVET-SYGKVRGLRVTVDGGP--VYAFLGIPYAKPPVGELRFK-KPQPPEPWTGV-LDA 55
Query: 166 LTFAHLPTRLIDYIS------TEALEDCLYLNVYTPMISTNVNQTEASQKLFPVIFYIHG 219
+ + D S T EDCLYLNVYTP + + K PV+ +IHG
Sbjct: 56 TKYGPACPQNNDLGSEMWNKNTGMSEDCLYLNVYTP-------KLASESKKLPVMVWIHG 108
Query: 220 GSFRVGSSHSMT---PHYLLEKDVVLVTIQYRLGILGFLSLETNEIPGNMGFLDMLLALE 276
G F+ GS+ P +DVV+VTI YRLG LGFLS +E+PGN G LD +LAL
Sbjct: 109 GGFQSGSASLDDYDGPDLAASEDVVVVTINYRLGALGFLSTGDSELPGNAGLLDQVLALR 168
Query: 277 WVNDHIRSFNGDKNCVTLMGQSAGGAAVTFFLTSP 311
WV D+I +F GD + VTL G+SAG A+V+ L SP
Sbjct: 169 WVKDNIAAFGGDPDNVTLFGESAGAASVSLLLLSP 203
Score = 52.7 bits (127), Expect = 1e-07
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 31 PEVNIDKLGKVRGRVTMSHWTKRLIYSFQGIPYAIPPVGKMRFQN 75
P V GKVRG +Y+F GIPYA PPVG++RF+
Sbjct: 1 PVVET-SYGKVRGLRVTVDGGP--VYAFLGIPYAKPPVGELRFKK 42
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 189 bits (483), Expect = 3e-56
Identities = 86/210 (40%), Positives = 111/210 (52%), Gaps = 23/210 (10%)
Query: 114 GKVRGRVTMSHWTKRLIYSFQGIPYAIPPVGKMRFQGVGISLPTWQGVGREFLTFAHL-- 171
GKVRG YSF GIPYA PPVG +RF+ W V + ++
Sbjct: 7 GKVRGVDEGGV------YSFLGIPYAEPPVGDLRFK-EPQPYEPWSDV-LDATSYPPSCM 58
Query: 172 -PTRLIDYISTEAL---EDCLYLNVYTPMISTNVNQTEASQKLFPVIFYIHGGSFRVGSS 227
+L + L EDCLYLNVYTP T+ L PV+ +IHGG F GS
Sbjct: 59 QWDQLGGGLWNAKLPGSEDCLYLNVYTP------KNTKPGNSL-PVMVWIHGGGFMFGSG 111
Query: 228 HSMTPHYLL--EKDVVLVTIQYRLGILGFLSLETNEIPGNMGFLDMLLALEWVNDHIRSF 285
L +V++V+I YRLG+LGFLS E+PGN G D LAL+WV D+I +F
Sbjct: 112 SLYPGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAF 171
Query: 286 NGDKNCVTLMGQSAGGAAVTFFLTSPLVRD 315
GD + VT+ G+SAGGA+V+ L SP +
Sbjct: 172 GGDPDSVTIFGESAGGASVSLLLLSPDSKG 201
Score = 45.4 bits (108), Expect = 3e-05
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 39 GKVRGRVTMSHWTKRLIYSFQGIPYAIPPVGKMRFQN 75
GKVRG YSF GIPYA PPVG +RF+
Sbjct: 7 GKVRGVDEGGV------YSFLGIPYAEPPVGDLRFKE 37
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 165 bits (419), Expect = 5e-47
Identities = 81/209 (38%), Positives = 113/209 (54%), Gaps = 28/209 (13%)
Query: 114 GKVRGRVTMSHWTKRLIYSFQGIPYAIPPVGKMRFQGVGISLPTWQGVGREFLTFAHLPT 173
GKV G T ++S+ GIPYA PPVG++RF+ + W GV R+ F
Sbjct: 10 GKVEGI------TVNGVHSWLGIPYAAPPVGELRFRR-PVPPEPWSGV-RDATQFGPACP 61
Query: 174 RLIDYISTEAL----EDCLYLNVYTPMISTNVNQTEASQKLFPVIFYIHGGSFRVGS-SH 228
+ + + + EDCLYLN++ P E + PV+ YIHGG + +GS S
Sbjct: 62 QPFNRMGSGEDFTGSEDCLYLNIWAP---------EVPAEKLPVMVYIHGGGYIMGSGSE 112
Query: 229 SMTPHYLLEK--DVVLVTIQYRLGILGFL---SLETNEI-PGNMGFLDMLLALEWVNDHI 282
+ L DVV+V++ YRLG LGFL SL+T + N+G LD +LAL+WV D+I
Sbjct: 113 PLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLDQILALKWVRDNI 172
Query: 283 RSFNGDKNCVTLMGQSAGGAAVTFFLTSP 311
+F GD VTL G+SAG A++ L P
Sbjct: 173 EAFGGDPQNVTLFGESAGAASILTLLAVP 201
Score = 36.6 bits (85), Expect = 0.015
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Query: 39 GKVRGRVTMSHWTKRLIYSFQGIPYAIPPVGKMRFQ 74
GKV G T ++S+ GIPYA PPVG++RF+
Sbjct: 10 GKVEGI------TVNGVHSWLGIPYAAPPVGELRFR 39
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 60.7 bits (147), Expect = 2e-10
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 212 PVIFYIHGGSFRVGS---SHSMTPHYLLEKDVVLVTIQYRLGILGFLSLETNEIPGNMGF 268
PV+ Y+HGG + +GS ++ V+V++ YRL E P
Sbjct: 80 PVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA---------PEHPFPAAL 130
Query: 269 LDMLLALEWVNDHIRSFNGDKNCVTLMGQSAGG--AAVT 305
D A W+ + D + + + G SAGG A
Sbjct: 131 EDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALAL 169
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 50.7 bits (122), Expect = 2e-07
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 214 IFYIHGGSFRVGSSHSMTPHYLLEK-----DVVLVTIQYRLGILGFLSLETNEIPGNMGF 268
+ Y HGG F +GS+ T L + V+V++ YRL + E + P
Sbjct: 1 LVYFHGGGFVLGSAD--THDRLCRRLAAAAGAVVVSVDYRL------APE-HPFPA--AI 49
Query: 269 LDMLLALEWVNDHIRSFNGDKNCVTLMGQSAGG--AAVT 305
D AL W+ +H D + + + G SAGG AA
Sbjct: 50 EDAYAALRWLAEHAWELGADPSRIAVAGDSAGGNLAAAV 88
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 38.7 bits (90), Expect = 0.004
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 209 KLFPVIFYIHGG-SFRVGSSHSMTPHYLLEKDVVLVTIQYRLGILGFLSLETNEIPGNMG 267
K +P+I YIHGG S +VG S + L ++ YR G G+ + I G+ G
Sbjct: 392 KKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYR-GSTGYGREFADAIRGDWG 450
Query: 268 ---FLDMLLALEWVNDHIRSFNGDKNCVTLMGQSAGG 301
D++ A++ + D + + G S GG
Sbjct: 451 GVDLEDLIAAVDALVKLPLV---DPERIGITGGSYGG 484
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 33.5 bits (77), Expect = 0.053
Identities = 19/118 (16%), Positives = 28/118 (23%), Gaps = 25/118 (21%)
Query: 212 PVIFYIHGGSFRVGSSHSMTP--HYLLEKDVVLVTIQYRLGILGFLSLETNEIPGNMGFL 269
V+ HG G + P L + +V + Y PG+ L
Sbjct: 1 LVVLL-HGAG---GDPEAYAPLARALASRGYNVVAVDY---------------PGHGASL 41
Query: 270 DMLLALEWVNDHIRSFNGDKNCVTLMGQSAGGAAVTFFLTSPLVRDGEFFEIGFIYAF 327
A + D D + L+G S GG
Sbjct: 42 GAPDAEAVLADAPL----DPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAGDPPD 95
>gnl|CDD|192243 pfam09287, CEP1-DNA_bind, CEP-1, DNA binding. Members of this
family of DNA-binding domains are found the
transcription factor CEP-1. They adopt a beta sandwich
structure, with nine strands in two beta-sheets, in a
Greek-key topology.
Length = 198
Score = 30.0 bits (67), Expect = 1.4
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 158 WQGVGREFLTFAHLPTRLIDYISTEALEDCLYLNVYTPMISTNVNQTEASQKL-FPVIFY 216
W+ F L R + Y + + +E+ + ++ N E + F FY
Sbjct: 45 WKLDKCHFNKNLFLKIRFVKYDAKDNIENAI--RNPRSDLAKCHNHREREEHFPFDSFFY 102
Query: 217 IHGGSFRVGSSHSMTPHYLLEKDVVLVTIQY 247
I S +P EKD I
Sbjct: 103 I------RKSEEEFSPQINAEKDQCFTAILA 127
>gnl|CDD|236660 PRK10162, PRK10162, acetyl esterase; Provisional.
Length = 318
Score = 29.3 bits (66), Expect = 3.2
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 213 VIFYIHGGSFRVGS--SHSMTPHYLL-EKDVVLVTIQYRL 249
+FY+HGG F +G+ +H L ++ I Y L
Sbjct: 83 TLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTL 122
>gnl|CDD|220701 pfam10340, DUF2424, Protein of unknown function (DUF2424). This is
a family of proteins conserved in yeasts. The function
is not known.
Length = 374
Score = 29.0 bits (65), Expect = 4.2
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 212 PVIFYIHGGSFRVGSSHSMTPHYLLEKDVVLVTIQYRLGILGFLSLE---TNEIPGNMGF 268
P++ Y HGG F + + P L V L + + L + T P + +
Sbjct: 123 PILLYYHGGGFALK----LIPVTL----VFLNNLGKYFPDMAILVSDYTVTANCPQSYTY 174
Query: 269 LDMLLALEWVNDHIRSFNGDKNCVTLMGQSAGGAAVTFFL 308
+L V D++ G KN VTLMG SAGG V L
Sbjct: 175 PLQVLQCLAVYDYLTLTKGCKN-VTLMGDSAGGNLVLNIL 213
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 27.9 bits (62), Expect = 8.2
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 74 QNMNAHHLLHLFLYLTVVSIGFCKVTNITDFVPEVNI-DKLGKVRGRVTMSHWTK-RLIY 131
Q + ++ YLT+ + + D + + DKLG+ +++ W + RL
Sbjct: 79 QQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAA 138
Query: 132 SFQGIPYAIPPVGKM 146
I P G++
Sbjct: 139 VVLQITPDANPAGQL 153
>gnl|CDD|179349 PRK01906, PRK01906, tetraacyldisaccharide 4'-kinase; Provisional.
Length = 338
Score = 27.8 bits (62), Expect = 9.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 233 HYLLEKDVVLVTIQYRLGILGFL 255
HY L +DV +V +RLG GFL
Sbjct: 161 HYRLARDVEIVVFDHRLGGNGFL 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.144 0.447
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,854,588
Number of extensions: 1749330
Number of successful extensions: 1730
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1717
Number of HSP's successfully gapped: 22
Length of query: 339
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 241
Effective length of database: 6,590,910
Effective search space: 1588409310
Effective search space used: 1588409310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.6 bits)