Query psy15633
Match_columns 129
No_of_seqs 201 out of 1066
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:41:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0527|consensus 100.0 9.2E-28 2E-32 187.2 12.1 93 14-106 53-145 (331)
2 cd01389 MATA_HMG-box MATA_HMG- 99.9 3.6E-27 7.8E-32 149.3 10.6 76 23-98 1-76 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.9 3.9E-25 8.4E-30 138.4 10.2 72 23-94 1-72 (72)
4 PTZ00199 high mobility group p 99.9 1.6E-23 3.4E-28 137.5 9.7 81 12-92 11-93 (94)
5 PF00505 HMG_box: HMG (high mo 99.9 7E-22 1.5E-26 121.9 6.0 69 24-92 1-69 (69)
6 smart00398 HMG high mobility g 99.8 8.9E-21 1.9E-25 116.7 9.2 70 23-92 1-70 (70)
7 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 1.2E-20 2.6E-25 115.3 9.3 66 24-89 1-66 (66)
8 cd00084 HMG-box High Mobility 99.8 2.2E-19 4.7E-24 109.3 9.4 66 24-89 1-66 (66)
9 PF09011 HMG_box_2: HMG-box do 99.8 1.7E-19 3.6E-24 113.1 6.6 71 21-91 1-72 (73)
10 COG5648 NHP6B Chromatin-associ 99.8 1.8E-18 3.8E-23 126.3 7.5 79 15-93 62-140 (211)
11 KOG0381|consensus 99.7 1.6E-17 3.6E-22 108.7 9.5 73 20-92 17-92 (96)
12 KOG3248|consensus 99.7 7.8E-18 1.7E-22 130.2 7.7 90 18-107 186-275 (421)
13 KOG0528|consensus 99.7 5.6E-18 1.2E-22 135.9 4.6 85 15-99 317-401 (511)
14 KOG0526|consensus 99.6 1.9E-15 4.2E-20 122.7 6.4 76 13-92 525-600 (615)
15 KOG4715|consensus 99.2 2.5E-11 5.5E-16 93.7 7.3 79 17-95 58-136 (410)
16 KOG2746|consensus 99.1 1.4E-10 3.1E-15 96.6 4.9 77 15-93 173-251 (683)
17 PF14887 HMG_box_5: HMG (high 98.2 7.5E-06 1.6E-10 51.4 6.8 71 23-94 3-73 (85)
18 PF06382 DUF1074: Protein of u 97.8 6.9E-05 1.5E-09 54.0 5.8 49 28-80 83-131 (183)
19 COG5648 NHP6B Chromatin-associ 97.5 0.00016 3.5E-09 53.4 4.1 68 23-90 143-210 (211)
20 PF04690 YABBY: YABBY protein; 97.4 0.00041 8.8E-09 50.0 5.8 49 18-66 116-164 (170)
21 PF04769 MAT_Alpha1: Mating-ty 97.0 0.0025 5.4E-08 47.2 6.0 59 15-79 35-93 (201)
22 PF08073 CHDNT: CHDNT (NUC034) 96.5 0.0055 1.2E-07 36.1 4.1 39 29-67 14-52 (55)
23 PF06244 DUF1014: Protein of u 93.8 0.15 3.2E-06 34.9 4.6 49 19-67 67-116 (122)
24 TIGR03481 HpnM hopanoid biosyn 91.8 0.34 7.3E-06 35.7 4.5 46 48-93 63-110 (198)
25 PRK15117 ABC transporter perip 89.7 0.74 1.6E-05 34.2 4.6 47 47-93 66-114 (211)
26 PF05494 Tol_Tol_Ttg2: Toluene 85.0 0.99 2.2E-05 32.0 2.9 46 47-92 36-83 (170)
27 KOG3223|consensus 81.2 2.4 5.2E-05 31.3 3.6 47 22-68 162-209 (221)
28 PF12881 NUT_N: NUT protein N 78.2 7.3 0.00016 30.8 5.6 65 18-82 193-283 (328)
29 PF05388 Carbpep_Y_N: Carboxyp 69.5 23 0.0005 23.8 5.8 34 51-84 45-78 (113)
30 PF06945 DUF1289: Protein of u 69.0 9.1 0.0002 21.9 3.3 26 50-80 23-48 (51)
31 PF13875 DUF4202: Domain of un 67.5 19 0.00041 26.4 5.3 40 30-72 131-170 (185)
32 KOG1610|consensus 64.8 24 0.00051 28.1 5.7 57 33-89 187-256 (322)
33 PF01352 KRAB: KRAB box; Inte 63.5 7.7 0.00017 21.2 2.1 29 51-79 3-32 (41)
34 PRK10236 hypothetical protein; 61.6 11 0.00023 28.8 3.2 26 54-79 118-143 (237)
35 PRK12751 cpxP periplasmic stre 61.1 27 0.00058 25.0 5.1 33 54-86 119-151 (162)
36 PRK12750 cpxP periplasmic repr 59.3 26 0.00056 25.2 4.8 33 56-88 128-160 (170)
37 COG2854 Ttg2D ABC-type transpo 59.1 12 0.00025 27.9 3.0 50 47-96 68-119 (202)
38 PF09164 VitD-bind_III: Vitami 58.0 41 0.00089 20.5 4.7 32 29-60 9-40 (68)
39 PRK10363 cpxP periplasmic repr 57.8 34 0.00073 24.7 5.1 39 52-91 111-149 (166)
40 PF12650 DUF3784: Domain of un 54.7 9.1 0.0002 24.5 1.7 15 62-76 26-40 (97)
41 PF11304 DUF3106: Protein of u 50.7 39 0.00084 22.3 4.3 25 53-77 11-35 (107)
42 PF06628 Catalase-rel: Catalas 49.4 21 0.00046 21.4 2.6 20 56-75 11-30 (68)
43 PRK09706 transcriptional repre 47.1 25 0.00055 23.7 3.0 39 53-91 87-125 (135)
44 PRK09897 hypothetical protein; 45.4 95 0.0021 26.4 6.7 33 52-84 354-386 (534)
45 PRK14283 chaperone protein Dna 44.4 63 0.0014 26.0 5.3 42 35-76 23-68 (378)
46 PRK14296 chaperone protein Dna 42.3 62 0.0013 26.0 5.0 41 36-76 23-67 (372)
47 PRK14291 chaperone protein Dna 41.0 65 0.0014 26.0 4.9 40 36-75 22-65 (382)
48 PRK14299 chaperone protein Dna 39.3 81 0.0018 24.4 5.1 41 35-75 22-66 (291)
49 PTZ00037 DnaJ_C chaperone prot 38.8 78 0.0017 26.1 5.1 42 35-76 46-88 (421)
50 PRK14279 chaperone protein Dna 38.7 58 0.0013 26.4 4.3 41 36-76 28-73 (392)
51 PRK10266 curved DNA-binding pr 38.5 97 0.0021 24.1 5.4 41 35-75 22-66 (306)
52 PRK10455 periplasmic protein; 37.7 92 0.002 22.1 4.8 27 54-80 119-145 (161)
53 cd07081 ALDH_F20_ACDH_EutE-lik 37.4 73 0.0016 26.2 4.8 38 54-91 7-44 (439)
54 PF02026 RyR: RyR domain; Int 36.4 41 0.00089 21.7 2.6 21 62-82 61-81 (94)
55 PF11304 DUF3106: Protein of u 35.7 1.3E+02 0.0028 19.8 6.1 36 41-76 33-70 (107)
56 PRK14287 chaperone protein Dna 35.5 99 0.0021 24.9 5.2 41 36-76 23-67 (371)
57 PRK14281 chaperone protein Dna 35.0 72 0.0016 25.9 4.4 41 35-75 21-66 (397)
58 PF12347 HJURP_C: Holliday jun 34.7 13 0.00028 22.4 0.0 43 74-127 21-63 (64)
59 PRK14285 chaperone protein Dna 34.5 76 0.0016 25.4 4.4 41 35-75 21-66 (365)
60 KOG2880|consensus 34.5 1E+02 0.0022 25.2 4.9 62 28-92 52-116 (424)
61 PRK14280 chaperone protein Dna 34.4 1E+02 0.0022 24.9 5.0 41 35-75 22-66 (376)
62 PF08367 M16C_assoc: Peptidase 34.4 1E+02 0.0023 23.0 4.9 31 52-82 13-43 (248)
63 PF13945 NST1: Salt tolerance 33.9 1.2E+02 0.0026 22.3 5.0 29 51-79 100-128 (190)
64 PF07813 LTXXQ: LTXXQ motif fa 33.2 91 0.002 19.2 3.8 25 52-76 75-99 (100)
65 PF06183 DinI: DinI-like famil 33.1 1.1E+02 0.0024 18.3 4.1 38 27-64 2-59 (65)
66 smart00271 DnaJ DnaJ molecular 33.1 41 0.0009 18.8 2.0 34 35-68 19-58 (60)
67 PRK14295 chaperone protein Dna 32.7 1.2E+02 0.0026 24.5 5.3 42 35-76 27-73 (389)
68 PF00226 DnaJ: DnaJ domain; I 32.6 86 0.0019 17.8 3.4 39 35-73 18-63 (64)
69 PF12290 DUF3802: Protein of u 32.4 1.3E+02 0.0028 20.3 4.5 39 41-79 49-101 (113)
70 KOG0713|consensus 32.2 1.3E+02 0.0028 24.2 5.1 43 36-78 35-82 (336)
71 PRK14284 chaperone protein Dna 31.3 99 0.0021 25.0 4.6 42 35-76 19-65 (391)
72 PHA03102 Small T antigen; Revi 31.0 1E+02 0.0022 21.8 4.1 36 35-70 25-61 (153)
73 PRK14288 chaperone protein Dna 30.5 1.4E+02 0.0031 23.9 5.3 40 36-75 22-66 (369)
74 cd08317 Death_ank Death domain 30.0 31 0.00067 21.5 1.2 21 47-67 3-23 (84)
75 PRK14294 chaperone protein Dna 29.9 1.4E+02 0.003 23.9 5.2 40 36-75 23-67 (366)
76 TIGR00787 dctP tripartite ATP- 29.5 85 0.0019 23.4 3.7 25 59-83 213-237 (257)
77 cd07132 ALDH_F3AB Aldehyde deh 29.3 1.1E+02 0.0024 25.0 4.6 35 54-88 6-40 (443)
78 PRK14286 chaperone protein Dna 29.3 1.5E+02 0.0032 23.9 5.2 41 35-75 22-67 (372)
79 PRK14276 chaperone protein Dna 28.6 1.3E+02 0.0028 24.2 4.8 40 36-75 23-66 (380)
80 PF00887 ACBP: Acyl CoA bindin 27.2 1.6E+02 0.0035 18.2 4.9 53 31-84 30-86 (87)
81 PRK14298 chaperone protein Dna 27.0 1.3E+02 0.0029 24.2 4.6 41 36-76 24-68 (377)
82 KOG0715|consensus 26.5 1.6E+02 0.0035 22.9 4.8 45 36-80 62-110 (288)
83 PF03480 SBP_bac_7: Bacterial 25.6 1.1E+02 0.0025 23.0 3.8 26 60-85 214-239 (286)
84 cd07085 ALDH_F6_MMSDH Methylma 25.0 1.6E+02 0.0035 24.2 4.9 34 56-89 48-81 (478)
85 COG1638 DctP TRAP-type C4-dica 25.0 1.4E+02 0.0029 23.8 4.2 33 58-90 243-275 (332)
86 KOG1827|consensus 24.5 3.8 8.3E-05 35.3 -4.8 44 27-70 552-595 (629)
87 PRK14278 chaperone protein Dna 24.2 1.6E+02 0.0036 23.6 4.6 41 35-75 21-65 (378)
88 cd07122 ALDH_F20_ACDH Coenzyme 24.1 1.7E+02 0.0036 24.1 4.7 34 56-89 9-42 (436)
89 cd07084 ALDH_KGSADH-like ALDH 23.9 1.6E+02 0.0034 24.1 4.6 37 53-89 6-42 (442)
90 cd07087 ALDH_F3-13-14_CALDH-li 23.9 1.6E+02 0.0034 23.9 4.6 34 55-88 7-40 (426)
91 cd07133 ALDH_CALDH_CalB Conife 23.7 1.6E+02 0.0035 24.0 4.6 35 55-89 7-41 (434)
92 PF15581 Imm35: Immunity prote 23.7 1.9E+02 0.0042 18.7 3.9 23 50-72 31-53 (93)
93 cd06257 DnaJ DnaJ domain or J- 23.6 1.4E+02 0.0029 16.2 3.7 32 35-66 18-54 (55)
94 PF11521 TFIIE-A_C-term: C-ter 23.4 1.7E+02 0.0038 18.6 3.7 29 51-80 52-80 (86)
95 PRK13252 betaine aldehyde dehy 23.1 1.8E+02 0.0038 24.1 4.7 34 56-89 54-87 (488)
96 KOG0493|consensus 23.0 1.8E+02 0.004 22.8 4.4 36 8-46 229-265 (342)
97 COG0484 DnaJ DnaJ-class molecu 22.9 1.8E+02 0.004 23.7 4.6 40 36-75 23-67 (371)
98 PF13412 HTH_24: Winged helix- 22.8 96 0.0021 16.6 2.2 24 43-66 12-35 (48)
99 PRK14292 chaperone protein Dna 22.8 1.8E+02 0.0039 23.3 4.6 40 36-75 21-64 (371)
100 PRK14290 chaperone protein Dna 22.6 1.7E+02 0.0037 23.4 4.4 40 36-75 22-67 (365)
101 PRK14277 chaperone protein Dna 22.5 2.1E+02 0.0046 23.0 5.0 41 35-75 23-68 (386)
102 cd07129 ALDH_KGSADH Alpha-Keto 22.3 1.8E+02 0.004 23.8 4.7 34 55-88 8-41 (454)
103 cd07118 ALDH_SNDH Gluconobacte 22.1 2.3E+02 0.005 23.2 5.2 28 62-89 37-64 (454)
104 cd07150 ALDH_VaniDH_like Pseud 22.1 1.9E+02 0.0042 23.4 4.7 33 56-88 31-63 (451)
105 cd07152 ALDH_BenzADH NAD-depen 21.9 2E+02 0.0044 23.3 4.8 35 55-89 22-56 (443)
106 PRK10767 chaperone protein Dna 21.5 2.2E+02 0.0048 22.7 4.9 40 36-75 23-67 (371)
107 PLN02150 terpene synthase/cycl 21.5 53 0.0012 21.2 1.1 19 51-69 25-43 (96)
108 COG3313 Predicted Fe-S protein 21.4 96 0.0021 19.3 2.2 21 50-75 28-48 (74)
109 PRK14297 chaperone protein Dna 21.3 1.5E+02 0.0032 23.9 3.9 40 36-75 23-67 (380)
110 PRK11241 gabD succinate-semial 21.3 2E+02 0.0044 23.9 4.7 32 59-90 61-92 (482)
111 cd07077 ALDH-like NAD(P)+-depe 21.3 1.6E+02 0.0035 23.6 4.1 32 56-87 4-35 (397)
112 cd07131 ALDH_AldH-CAJ73105 Unc 21.0 2.1E+02 0.0046 23.4 4.8 33 56-88 47-79 (478)
113 cd07137 ALDH_F3FHI Plant aldeh 20.9 2E+02 0.0044 23.4 4.6 34 55-88 8-41 (432)
114 TIGR01780 SSADH succinate-semi 20.8 2.1E+02 0.0046 23.3 4.7 34 55-88 28-61 (448)
115 cd07108 ALDH_MGR_2402 Magnetos 20.6 2.2E+02 0.0047 23.2 4.8 33 56-88 29-61 (457)
116 PRK13968 putative succinate se 20.5 2.2E+02 0.0048 23.4 4.8 34 57-90 40-73 (462)
117 TIGR02574 stabl_TIGR02574 puta 20.5 2E+02 0.0043 16.8 4.1 39 48-86 2-45 (63)
118 TIGR02349 DnaJ_bact chaperone 20.5 2.2E+02 0.0047 22.6 4.6 38 35-72 18-59 (354)
119 cd07104 ALDH_BenzADH-like ALDH 20.4 2.3E+02 0.0049 22.8 4.8 34 55-88 9-42 (431)
No 1
>KOG0527|consensus
Probab=99.95 E-value=9.2e-28 Score=187.24 Aligned_cols=93 Identities=71% Similarity=1.071 Sum_probs=87.8
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 14 LSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 14 ~~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
....++..+++||||||||+|.+..|.+|..+||++.+.||||.||..||.|+++||.+|+++|++++..|++++|+|+|
T Consensus 53 ~~~~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKY 132 (331)
T KOG0527|consen 53 GMKDKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKY 132 (331)
T ss_pred cccCCCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCccc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCC
Q psy15633 94 RPRRKPKTLRKDG 106 (129)
Q Consensus 94 ~p~~~~~~~~~~~ 106 (129)
+||||+++.....
T Consensus 133 RPRRKkk~~~~~~ 145 (331)
T KOG0527|consen 133 RPRRKKKKRPKLL 145 (331)
T ss_pred ccccccccccccc
Confidence 9999988777764
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.95 E-value=3.6e-27 Score=149.35 Aligned_cols=76 Identities=33% Similarity=0.657 Sum_probs=74.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q psy15633 23 HIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRK 98 (129)
Q Consensus 23 ~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~~ 98 (129)
+||||+||||||+++.|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|.+++|+|+|+|+++
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p~~~ 76 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTPRKS 76 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.93 E-value=3.9e-25 Score=138.40 Aligned_cols=72 Identities=57% Similarity=0.976 Sum_probs=70.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy15633 23 HIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYR 94 (129)
Q Consensus 23 ~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~ 94 (129)
++|||+||||+|+++.|.+++.+||++++.+|+++||++|+.|++++|++|.++|+.++++|.+++|+|+|+
T Consensus 1 ~iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~y~ 72 (72)
T cd01388 1 HIKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKWR 72 (72)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999985
No 4
>PTZ00199 high mobility group protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=137.54 Aligned_cols=81 Identities=27% Similarity=0.500 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 12 TLLSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMH--NSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 12 ~~~~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~--~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
-....+.+|++.||||+||||||+.++|..|..+||+++ +.+|+++||++|+.|+++||++|+++|+.++++|..++.
T Consensus 11 k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~ 90 (94)
T PTZ00199 11 RKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKA 90 (94)
T ss_pred cccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567889999999999999999999999999999986 899999999999999999999999999999999999999
Q ss_pred CCC
Q psy15633 90 DYK 92 (129)
Q Consensus 90 ~yk 92 (129)
.|+
T Consensus 91 ~Y~ 93 (94)
T PTZ00199 91 EYA 93 (94)
T ss_pred HHh
Confidence 884
No 5
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.86 E-value=7e-22 Score=121.86 Aligned_cols=69 Identities=45% Similarity=0.746 Sum_probs=65.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 24 IKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 24 pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
||||+|||+||+.+.+..++.+||+++..+|+++||++|+.|++++|++|.++|.+++++|.+++++|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999999999999999999999998873
No 6
>smart00398 HMG high mobility group.
Probab=99.85 E-value=8.9e-21 Score=116.69 Aligned_cols=70 Identities=49% Similarity=0.848 Sum_probs=68.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 23 HIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 23 ~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
.|+||+|+|++|+.+.|..+..+||++++.+|+++||.+|+.|++++|++|.++|+.++++|..+++.|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999984
No 7
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.85 E-value=1.2e-20 Score=115.28 Aligned_cols=66 Identities=35% Similarity=0.632 Sum_probs=64.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 24 IKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 24 pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
||||+|||++|+++.|..++.+||++++.+|++.||++|+.|++++|++|.+.|++++++|..++.
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~~ 66 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEMK 66 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 799999999999999999999999999999999999999999999999999999999999998863
No 8
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.81 E-value=2.2e-19 Score=109.27 Aligned_cols=66 Identities=36% Similarity=0.649 Sum_probs=64.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 24 IKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 24 pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
||||+|+|++|+++.+..++.++|+++..+|++.+|.+|+.|++++|++|.+.|+.++.+|.++++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~~ 66 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEMP 66 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 799999999999999999999999999999999999999999999999999999999999998764
No 9
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.80 E-value=1.7e-19 Score=113.07 Aligned_cols=71 Identities=25% Similarity=0.492 Sum_probs=62.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy15633 21 DDHIKRPMNAFMVWSRLQRRKIAQD-NPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDY 91 (129)
Q Consensus 21 ~~~pkrP~naf~lf~~~~r~~~~~~-~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 91 (129)
|++||+|+|||+||+.+++..++.. ++.....++++.|+..|+.||++||++|.++|+.++++|..++..|
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~ 72 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEW 72 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999988 6778899999999999999999999999999999999999998766
No 10
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.76 E-value=1.8e-18 Score=126.30 Aligned_cols=79 Identities=34% Similarity=0.585 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 15 SPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 15 ~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
..+++|++.||||++||++|+.+.|+++..++|++.+.+|++++|+.|++|+++||++|...|..++++|+.+...|.-
T Consensus 62 ~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~~ 140 (211)
T COG5648 62 VRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYNK 140 (211)
T ss_pred HHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhhc
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999999999954
No 11
>KOG0381|consensus
Probab=99.74 E-value=1.6e-17 Score=108.65 Aligned_cols=73 Identities=40% Similarity=0.672 Sum_probs=69.8
Q ss_pred CC--CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC-CCC
Q psy15633 20 ID--DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP-DYK 92 (129)
Q Consensus 20 ~~--~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~-~yk 92 (129)
++ +.|+||++||++|+.+.+..++.+||+++..+|++++|++|++|++++|++|...+..++++|..++. .|+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~ 92 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYK 92 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 59999999999999999999999999999999999999999999999999999999999999999999 774
No 12
>KOG3248|consensus
Probab=99.73 E-value=7.8e-18 Score=130.18 Aligned_cols=90 Identities=29% Similarity=0.504 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q psy15633 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRR 97 (129)
Q Consensus 18 ~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~ 97 (129)
.....++|+|+||||||++|+|.+|.+++--....+|.++||+.|..|+.||.++|+|+|+++++.|.+.||+|..+..-
T Consensus 186 e~KkphiKKPLNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdNY 265 (421)
T KOG3248|consen 186 EAKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNY 265 (421)
T ss_pred cccCccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhh
Confidence 33578999999999999999999999999877789999999999999999999999999999999999999999887765
Q ss_pred CCcccccCCC
Q psy15633 98 KPKTLRKDGY 107 (129)
Q Consensus 98 ~~~~~~~~~~ 107 (129)
.++++++.+-
T Consensus 266 gKKkKrkReK 275 (421)
T KOG3248|consen 266 GKKKKRKREK 275 (421)
T ss_pred hhhhhhhhhc
Confidence 4444444433
No 13
>KOG0528|consensus
Probab=99.71 E-value=5.6e-18 Score=135.85 Aligned_cols=85 Identities=52% Similarity=0.944 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy15633 15 SPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYR 94 (129)
Q Consensus 15 ~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~ 94 (129)
..+...+.++|||+||||+|.++.|.+|...+|++.+..|+++||..|+.|+..||++|+++-.+.-..|.+.+|+|+|+
T Consensus 317 rg~~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYk 396 (511)
T KOG0528|consen 317 RGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYK 396 (511)
T ss_pred cCcCCCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccC
Confidence 33455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy15633 95 PRRKP 99 (129)
Q Consensus 95 p~~~~ 99 (129)
|+-|.
T Consensus 397 PRPKR 401 (511)
T KOG0528|consen 397 PRPKR 401 (511)
T ss_pred CCCCc
Confidence 98554
No 14
>KOG0526|consensus
Probab=99.59 E-value=1.9e-15 Score=122.68 Aligned_cols=76 Identities=25% Similarity=0.453 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 13 LLSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 13 ~~~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
...+++|||+.|||+++|||+|++..|+.|+.+ +.++++|++.+|++|+.|+. |++|++.|+.++++|+.+|.+|+
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk 600 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYK 600 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999988 88999999999999999999 99999999999999999999997
No 15
>KOG4715|consensus
Probab=99.24 E-value=2.5e-11 Score=93.68 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy15633 17 EKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRP 95 (129)
Q Consensus 17 ~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p 95 (129)
..+.+..|-+|+-+||.|.+..+++|+..||++..-||.++||.+|..|+++||+.|...++.++..|.+.|..|.-.|
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~sp 136 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNSP 136 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 3456777889999999999999999999999999999999999999999999999999999999999999999998655
No 16
>KOG2746|consensus
Probab=99.07 E-value=1.4e-10 Score=96.62 Aligned_cols=77 Identities=43% Similarity=0.700 Sum_probs=71.0
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHH--HHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 15 SPEKKIDDHIKRPMNAFMVWSRLQR--RKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 15 ~~~~k~~~~pkrP~naf~lf~~~~r--~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
.+-+.+..+++||||+|++|++.+| ..+...||+..+..|+++||+.|-.|.+.||+.|.++|.+.++.|.++ +|.
T Consensus 173 spnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka--e~~ 250 (683)
T KOG2746|consen 173 SPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA--EWK 250 (683)
T ss_pred CCCcCcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh--hcc
Confidence 3457788999999999999999999 899999999999999999999999999999999999999999999997 554
Q ss_pred C
Q psy15633 93 Y 93 (129)
Q Consensus 93 ~ 93 (129)
+
T Consensus 251 k 251 (683)
T KOG2746|consen 251 K 251 (683)
T ss_pred c
Confidence 3
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.23 E-value=7.5e-06 Score=51.38 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=58.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy15633 23 HIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYR 94 (129)
Q Consensus 23 ~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~ 94 (129)
-|-.|-++--+|.+.......+.++.....+ .+.+...|++|++.+|-+|+..|.++..+|+.++-+|+-.
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~ 73 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRNDRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSA 73 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTSTHHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-C
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHhHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3667888999999999888888898877766 4589999999999999999999999999999999999753
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.78 E-value=6.9e-05 Score=54.02 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy15633 28 MNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRL 80 (129)
Q Consensus 28 ~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~ 80 (129)
-|+||-|+.+++. .|.++...|+....+.+|..|++++|..|..++...
T Consensus 83 nnaYLNFLReFRr----kh~~L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~ 131 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCGLSPQDLIQRAARAWCRLSEAEKNRYRRMAPSV 131 (183)
T ss_pred chHHHHHHHHHHH----HccCCCHHHHHHHHHHHHHhCCHHHHHHHHhhcchh
Confidence 5789999999877 558899999999999999999999999999876543
No 19
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=97.47 E-value=0.00016 Score=53.42 Aligned_cols=68 Identities=26% Similarity=0.379 Sum_probs=61.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15633 23 HIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPD 90 (129)
Q Consensus 23 ~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 90 (129)
.++.|.-+|+-+-.+.|..+...+++....+++++++..|+.|++.-|.+|.+.+..++++|...++.
T Consensus 143 ~~~~~~~~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~~ 210 (211)
T COG5648 143 PNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYPE 210 (211)
T ss_pred CCCCCCchhhhccHHhccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhccc
Confidence 45667777888888888888888899899999999999999999999999999999999999988864
No 20
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.44 E-value=0.00041 Score=49.98 Aligned_cols=49 Identities=16% Similarity=0.330 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy15633 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLT 66 (129)
Q Consensus 18 ~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls 66 (129)
.|.+.+-.|-++||-.|+++.-..|+..+|+++..|.-..++..|...+
T Consensus 116 ~kPPEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 116 NKPPEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred cCCccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhCc
Confidence 4556666777999999999999999999999999999999999998765
No 21
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=96.98 E-value=0.0025 Score=47.20 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q psy15633 15 SPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKR 79 (129)
Q Consensus 15 ~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~ 79 (129)
..++.....++||.|+||+|+.-+- ...++....++|.+|+..|..=+- |..|.-.|..
T Consensus 35 ~~~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak~ 93 (201)
T PF04769_consen 35 SSRKRSPEKAKRPLNGFMAFRSYYS----PIFPPLPQKELSGILTKLWEKDPF--KNKWSLMAKA 93 (201)
T ss_pred ccccccccccccchhHHHHHHHHHH----hhcCCcCHHHHHHHHHHHHhCCcc--HhHHHHHhhh
Confidence 3456667889999999999988776 345788899999999999987433 4556655443
No 22
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.54 E-value=0.0055 Score=36.13 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCH
Q psy15633 29 NAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTE 67 (129)
Q Consensus 29 naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~ 67 (129)
+.|=+|.+..|+.|.+.||++..+.|..+++.+|+.-++
T Consensus 14 t~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 14 TNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999987543
No 23
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=93.81 E-value=0.15 Score=34.94 Aligned_cols=49 Identities=27% Similarity=0.457 Sum_probs=42.0
Q ss_pred CCCCCCCCCC-cHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCH
Q psy15633 19 KIDDHIKRPM-NAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTE 67 (129)
Q Consensus 19 k~~~~pkrP~-naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~ 67 (129)
....+|-|-+ -||.-|.....+.++.++|++..+++-.+|-..|..-++
T Consensus 67 ~~drHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 67 PIDRHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred CCCCCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCC
Confidence 4455665555 689999999999999999999999999999999987665
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=91.82 E-value=0.34 Score=35.65 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=38.7
Q ss_pred CCCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHH-HHHHHHHhCCCCCC
Q psy15633 48 KMHNSEISK-RLGAEWKLLTENEKRPYIDEAKR-LRAMHMKDHPDYKY 93 (129)
Q Consensus 48 ~~~~~eisk-~l~~~Wk~ls~~eK~~y~~~a~~-~k~~y~~~~~~yk~ 93 (129)
..++..+++ .||..|+.+++++|+.|.+.... ....|-..+..|.-
T Consensus 63 ~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~ 110 (198)
T TIGR03481 63 AFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAG 110 (198)
T ss_pred hCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 457788877 68999999999999999998888 67889888887753
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=89.65 E-value=0.74 Score=34.18 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=38.6
Q ss_pred CCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHH-HHHHHHHhCCCCCC
Q psy15633 47 PKMHNSEISK-RLGAEWKLLTENEKRPYIDEAKR-LRAMHMKDHPDYKY 93 (129)
Q Consensus 47 p~~~~~eisk-~l~~~Wk~ls~~eK~~y~~~a~~-~k~~y~~~~~~yk~ 93 (129)
|..++..+++ .||..|+.+++++|+.|.+.... ....|...+..|.-
T Consensus 66 p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~ 114 (211)
T PRK15117 66 PYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHG 114 (211)
T ss_pred ccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5567777876 68999999999999999987776 46788888888863
No 26
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=85.05 E-value=0.99 Score=31.97 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=35.1
Q ss_pred CCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHHHH-HHHHHHHhCCCCC
Q psy15633 47 PKMHNSEISKR-LGAEWKLLTENEKRPYIDEAKR-LRAMHMKDHPDYK 92 (129)
Q Consensus 47 p~~~~~eisk~-l~~~Wk~ls~~eK~~y~~~a~~-~k~~y~~~~~~yk 92 (129)
|...+..+++. ||.-|+.+++++++.|.+.... ....|...+..|.
T Consensus 36 ~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~ 83 (170)
T PF05494_consen 36 PYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYS 83 (170)
T ss_dssp GGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 55677777765 7889999999999999987766 4677888888885
No 27
>KOG3223|consensus
Probab=81.23 E-value=2.4 Score=31.29 Aligned_cols=47 Identities=23% Similarity=0.433 Sum_probs=39.7
Q ss_pred CCCC-CCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHH
Q psy15633 22 DHIK-RPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEN 68 (129)
Q Consensus 22 ~~pk-rP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~ 68 (129)
.+|- |=.-||.-|-...-+.|+.++|++..+++-.+|-..|..-++.
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPDN 209 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPDN 209 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCCC
Confidence 3443 3456799998889999999999999999999999999987765
No 28
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=78.18 E-value=7.3 Score=30.84 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHH--------------------------HHhhCCCCCHHHHHHHHHHHhhcCCHHHHH
Q psy15633 18 KKIDDHIKRPMNAFMVWSRLQRRK--------------------------IAQDNPKMHNSEISKRLGAEWKLLTENEKR 71 (129)
Q Consensus 18 ~k~~~~pkrP~naf~lf~~~~r~~--------------------------~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~ 71 (129)
+..++.--.|.+-|--|+...+-+ +....|.|+..|-....-+.|...|.-+|.
T Consensus 193 ~s~~d~sc~~ksVYeNfRrWQ~~K~LarrHlpQsPD~EAlSCFLIpvLrsLar~kPtMtlEeGl~ra~qEW~~~SnfdRm 272 (328)
T PF12881_consen 193 KSSPDDSCNPKSVYENFRRWQHYKALARRHLPQSPDAEALSCFLIPVLRSLARLKPTMTLEEGLWRAVQEWQHTSNFDRM 272 (328)
T ss_pred CCCcccccccHhHHHHHHHHHHhHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCccHHHHHHHHHHHhhccccccHH
Confidence 334555566777788887655422 234456677778778888999999999999
Q ss_pred HHHHHHHHHHH
Q psy15633 72 PYIDEAKRLRA 82 (129)
Q Consensus 72 ~y~~~a~~~k~ 82 (129)
.|+++|++..+
T Consensus 273 ifyemaekFmE 283 (328)
T PF12881_consen 273 IFYEMAEKFME 283 (328)
T ss_pred HHHHHHHHHcc
Confidence 99999988643
No 29
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=69.51 E-value=23 Score=23.78 Aligned_cols=34 Identities=24% Similarity=0.123 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy15633 51 NSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMH 84 (129)
Q Consensus 51 ~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y 84 (129)
...+++.+++.++.|+.|.|+.|.|.....-+..
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~fP~~~ 78 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLLFPDAV 78 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHCcHHH
Confidence 4567788999999999999999999888754544
No 30
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=69.00 E-value=9.1 Score=21.88 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy15633 50 HNSEISKRLGAEWKLLTENEKRPYIDEAKRL 80 (129)
Q Consensus 50 ~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~ 80 (129)
+..||.. |+.|++++|....+.....
T Consensus 23 T~dEI~~-----W~~~s~~er~~i~~~l~~R 48 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRAILARLRAR 48 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHHHHHHH
Confidence 4566766 9999999988777654443
No 31
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=67.52 E-value=19 Score=26.44 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q psy15633 30 AFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRP 72 (129)
Q Consensus 30 af~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~ 72 (129)
+-++|...+.+.+...| +...+..+|..-|+.||+.-++.
T Consensus 131 acLVFL~~~f~~F~~~~---deeK~v~Il~KTw~KMS~~g~~~ 170 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKH---DEEKIVDILRKTWRKMSERGHEA 170 (185)
T ss_pred HHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHCCHHHHHH
Confidence 46889999999998887 55788999999999999987653
No 32
>KOG1610|consensus
Probab=64.76 E-value=24 Score=28.14 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhC-------CC------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 33 VWSRLQRRKIAQDN-------PK------MHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 33 lf~~~~r~~~~~~~-------p~------~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
.|+...|.++..-+ |+ .+...+.+.+.++|..|+++.|+.|-+.+..+...-.+.+.
T Consensus 187 af~D~lR~EL~~fGV~VsiiePG~f~T~l~~~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~~~~~~~~ 256 (322)
T KOG1610|consen 187 AFSDSLRRELRPFGVKVSIIEPGFFKTNLANPEKLEKRMKEIWERLPQETKDEYGEDYFEDYKKSLEKYL 256 (322)
T ss_pred HHHHHHHHHHHhcCcEEEEeccCccccccCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46667777765322 21 23578899999999999999999999887776655554443
No 33
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=63.55 E-value=7.7 Score=21.23 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=16.6
Q ss_pred HHHHHHHHH-HHhhcCCHHHHHHHHHHHHH
Q psy15633 51 NSEISKRLG-AEWKLLTENEKRPYIDEAKR 79 (129)
Q Consensus 51 ~~eisk~l~-~~Wk~ls~~eK~~y~~~a~~ 79 (129)
+.+|+.-.+ +.|..|.+.+|..|.+.-.+
T Consensus 3 f~Dvav~fs~eEW~~L~~~Qk~ly~dvm~E 32 (41)
T PF01352_consen 3 FEDVAVYFSQEEWELLDPAQKNLYRDVMLE 32 (41)
T ss_dssp ----TT---HHHHHTS-HHHHHHHHHHHHH
T ss_pred EEEEEEEcChhhcccccceecccchhHHHH
Confidence 445555555 56999999999999876543
No 34
>PRK10236 hypothetical protein; Provisional
Probab=61.63 E-value=11 Score=28.76 Aligned_cols=26 Identities=19% Similarity=0.506 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q psy15633 54 ISKRLGAEWKLLTENEKRPYIDEAKR 79 (129)
Q Consensus 54 isk~l~~~Wk~ls~~eK~~y~~~a~~ 79 (129)
+.+++.+.|+.|+++|++.+.+.-..
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~~ 143 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVDA 143 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhh
Confidence 67889999999999999887754433
No 35
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=61.09 E-value=27 Score=25.02 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy15633 54 ISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMK 86 (129)
Q Consensus 54 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~ 86 (129)
..++..+++..|++++|..|.+..++..++...
T Consensus 119 ~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~ 151 (162)
T PRK12751 119 MAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ 151 (162)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 345556788999999999999988888777655
No 36
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=59.29 E-value=26 Score=25.18 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 56 KRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 56 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
+...+++..|++++|+.|.+.-++..+.+.+.+
T Consensus 128 ~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 128 EKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999888888887766
No 37
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.11 E-value=12 Score=27.90 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=37.8
Q ss_pred CCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHHH-HHHHHHHhCCCCCCCCC
Q psy15633 47 PKMHNSEIS-KRLGAEWKLLTENEKRPYIDEAKR-LRAMHMKDHPDYKYRPR 96 (129)
Q Consensus 47 p~~~~~eis-k~l~~~Wk~ls~~eK~~y~~~a~~-~k~~y~~~~~~yk~~p~ 96 (129)
|-.++.-+. ..||.-|+.+++++++.|.+.... ....|...+..|+-+.-
T Consensus 68 p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~ 119 (202)
T COG2854 68 PYVDFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTL 119 (202)
T ss_pred hhhcHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 334444443 458999999999999999987766 56789999999976543
No 38
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=57.99 E-value=41 Score=20.54 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy15633 29 NAFMVWSRLQRRKIAQDNPKMHNSEISKRLGA 60 (129)
Q Consensus 29 naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~ 60 (129)
+-|.-|-+.-.+.++...|+.+..+|..++.+
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDATPTELKELVEK 40 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 67888989999999999999999999887765
No 39
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=57.84 E-value=34 Score=24.67 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy15633 52 SEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDY 91 (129)
Q Consensus 52 ~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 91 (129)
.+..++-.++++.|++|+|..|.+..++...++.. ++.+
T Consensus 111 Vem~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~-~~~~ 149 (166)
T PRK10363 111 VEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD-VTQW 149 (166)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 34566667899999999999999999888888865 5554
No 40
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=54.67 E-value=9.1 Score=24.55 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=13.1
Q ss_pred hhcCCHHHHHHHHHH
Q psy15633 62 WKLLTENEKRPYIDE 76 (129)
Q Consensus 62 Wk~ls~~eK~~y~~~ 76 (129)
|+.||+|||+.|.+.
T Consensus 26 yntms~eEk~~~D~~ 40 (97)
T PF12650_consen 26 YNTMSKEEKEKYDKK 40 (97)
T ss_pred cccCCHHHHHHhhHH
Confidence 899999999999754
No 41
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=50.73 E-value=39 Score=22.31 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHH
Q psy15633 53 EISKRLGAEWKLLTENEKRPYIDEA 77 (129)
Q Consensus 53 eisk~l~~~Wk~ls~~eK~~y~~~a 77 (129)
++..-+...|+.|+++.|..+.+.+
T Consensus 11 ~~L~pl~~~W~~l~~~qr~k~l~~a 35 (107)
T PF11304_consen 11 QALAPLAERWNSLPPEQRRKWLQIA 35 (107)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344455555555555555555544
No 42
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=49.44 E-value=21 Score=21.43 Aligned_cols=20 Identities=10% Similarity=0.428 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q psy15633 56 KRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 56 k~l~~~Wk~ls~~eK~~y~~ 75 (129)
...+..|+.|++++|+.+..
T Consensus 11 ~Qa~~ly~~l~~~er~~lv~ 30 (68)
T PF06628_consen 11 SQARDLYRVLSDEERERLVE 30 (68)
T ss_dssp HHHHHHHHHSSHHHHHHHHH
T ss_pred hhHHHHHHHCCHHHHHHHHH
Confidence 35678899999998888775
No 43
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=47.11 E-value=25 Score=23.75 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy15633 53 EISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDY 91 (129)
Q Consensus 53 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 91 (129)
+-.+.|-..|+.|++++++......+...+.|.+.+.+|
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~ 125 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEEL 125 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999999988888888877
No 44
>PRK09897 hypothetical protein; Provisional
Probab=45.39 E-value=95 Score=26.36 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy15633 52 SEISKRLGAEWKLLTENEKRPYIDEAKRLRAMH 84 (129)
Q Consensus 52 ~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y 84 (129)
..+...+...|..|++++|+.|.......-..+
T Consensus 354 ~~l~~~~~~iw~~l~~~d~~rf~~~l~~~~~~~ 386 (534)
T PRK09897 354 LRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDN 386 (534)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhhhHHHHHh
Confidence 445667789999999999999987665554433
No 45
>PRK14283 chaperone protein DnaJ; Provisional
Probab=44.43 E-value=63 Score=25.99 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYIDE 76 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~ 76 (129)
.+.+|...++-||+.+ ..+..+.|.+.|..|++.+|..-++.
T Consensus 23 k~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 23 KKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 4566777788889875 56788899999999998887655554
No 46
>PRK14296 chaperone protein DnaJ; Provisional
Probab=42.32 E-value=62 Score=26.04 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYIDE 76 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~ 76 (129)
+.+|...++-||+.+ ..+--+.|.+.|..|++++|..-++.
T Consensus 23 ~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 23 QAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred HHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 455666677788865 45677889999999998887655544
No 47
>PRK14291 chaperone protein DnaJ; Provisional
Probab=41.01 E-value=65 Score=25.96 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+.+|...+.-||+.+ ..+.-+.|.+.|..|++.+|..-++
T Consensus 22 ~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD 65 (382)
T PRK14291 22 KAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65 (382)
T ss_pred HHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 556777777888865 4577889999999999887655444
No 48
>PRK14299 chaperone protein DnaJ; Provisional
Probab=39.26 E-value=81 Score=24.37 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|..-++
T Consensus 22 k~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD 66 (291)
T PRK14299 22 KKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66 (291)
T ss_pred HHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3556777777788865 4567788999999999877654443
No 49
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=38.75 E-value=78 Score=26.07 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH-NSEISKRLGAEWKLLTENEKRPYIDE 76 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~-~~eisk~l~~~Wk~ls~~eK~~y~~~ 76 (129)
.+.+|...++-||+.+ ..+.-+.|.+.|..|++.+|...++.
T Consensus 46 KkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 46 KKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 5677888888999976 34788899999999998887665554
No 50
>PRK14279 chaperone protein DnaJ; Provisional
Probab=38.74 E-value=58 Score=26.40 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYIDE 76 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~~ 76 (129)
+.+|...+.-||+.+ ..+.-+.|.+.|..|++++|..-++.
T Consensus 28 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 28 KAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred HHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 456777788899875 34677889999999998887655544
No 51
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=38.53 E-value=97 Score=24.11 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|...++-||+.+ ..+..+.+.+.|..|++.+|..-++
T Consensus 22 k~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD 66 (306)
T PRK10266 22 KTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66 (306)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3456777778888865 6678889999999998776654443
No 52
>PRK10455 periplasmic protein; Reviewed
Probab=37.66 E-value=92 Score=22.13 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=20.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy15633 54 ISKRLGAEWKLLTENEKRPYIDEAKRL 80 (129)
Q Consensus 54 isk~l~~~Wk~ls~~eK~~y~~~a~~~ 80 (129)
..+....++..|++++|+.|.+..++.
T Consensus 119 ~~~~~~qiy~vLTPEQr~q~~~~~ekr 145 (161)
T PRK10455 119 HMETQNKIYNVLTPEQKKQFNANFEKR 145 (161)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344456789999999999998766444
No 53
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=37.41 E-value=73 Score=26.23 Aligned_cols=38 Identities=8% Similarity=-0.098 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy15633 54 ISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDY 91 (129)
Q Consensus 54 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 91 (129)
.++..-..|+.++.++|..+.....+..+++.+++...
T Consensus 7 ~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~ 44 (439)
T cd07081 7 AAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKL 44 (439)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567888888888888877777767666665544
No 54
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=36.39 E-value=41 Score=21.69 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.3
Q ss_pred hhcCCHHHHHHHHHHHHHHHH
Q psy15633 62 WKLLTENEKRPYIDEAKRLRA 82 (129)
Q Consensus 62 Wk~ls~~eK~~y~~~a~~~k~ 82 (129)
|..|++++|+.+.+.+.+...
T Consensus 61 y~~L~e~eK~~dr~~~~e~lk 81 (94)
T PF02026_consen 61 YDELSEEEKEKDRDMVRETLK 81 (94)
T ss_dssp GGGS-HHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHhHHHHHHHHH
Confidence 999999999999998877643
No 55
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=35.74 E-value=1.3e+02 Score=19.79 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=22.8
Q ss_pred HHHhhCCCCCHHHHHHHHH--HHhhcCCHHHHHHHHHH
Q psy15633 41 KIAQDNPKMHNSEISKRLG--AEWKLLTENEKRPYIDE 76 (129)
Q Consensus 41 ~~~~~~p~~~~~eisk~l~--~~Wk~ls~~eK~~y~~~ 76 (129)
.+...++.++..+-.++.. ..|..||+++|..-.+.
T Consensus 33 ~~a~r~~~mspeqq~r~~~rm~~W~~LspeqR~~~R~~ 70 (107)
T PF11304_consen 33 QIAERWPSMSPEQQQRLRERMRRWAALSPEQRQQAREN 70 (107)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556667777655554443 47888888887655443
No 56
>PRK14287 chaperone protein DnaJ; Provisional
Probab=35.52 E-value=99 Score=24.85 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=30.0
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYIDE 76 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~ 76 (129)
+.+|...+.-||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 23 ~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 23 KAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred HHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 456666677788865 34677889999999998876655554
No 57
>PRK14281 chaperone protein DnaJ; Provisional
Probab=35.02 E-value=72 Score=25.87 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMHN-----SEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|...+.-||+.+. .+..+.|.+.|..|++.+|..-++
T Consensus 21 kkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD 66 (397)
T PRK14281 21 KKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYD 66 (397)
T ss_pred HHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 45677777888998753 467899999999999877654444
No 58
>PF12347 HJURP_C: Holliday junction regulator protein family C-terminal repeat; InterPro: IPR022102 Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, PF10384 from PFAM, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. ; PDB: 3P57_A 3KOV_A.
Probab=34.71 E-value=13 Score=22.40 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcccccCCCCCCCCccCCCCCCccccccC
Q psy15633 74 IDEAKRLRAMHMKDHPDYKYRPRRKPKTLRKDGYTYPAVSVPYQSVPVDALRAG 127 (129)
Q Consensus 74 ~~~a~~~k~~y~~~~~~yk~~p~~~~~~~~~~~~~~p~~s~p~~~~~~~~~~~g 127 (129)
++.+.+..++|...|..|.-.+.. +.+..++|. ++||+..++|
T Consensus 21 e~kY~eI~eeFD~l~q~y~~~~~~----------~p~~~~mp~-svpVs~~~~~ 63 (64)
T PF12347_consen 21 ENKYREINEEFDKLHQRYCLSPGK----------PPQNFSMPV-SVPVSNYNAG 63 (64)
T ss_dssp ------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCC----------CCCccCCCc-ceeccCccCC
Confidence 355677889999999999543311 122223333 6667666655
No 59
>PRK14285 chaperone protein DnaJ; Provisional
Probab=34.52 E-value=76 Score=25.44 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++++|..-++
T Consensus 21 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd 66 (365)
T PRK14285 21 KKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYD 66 (365)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHH
Confidence 3566777788899875 3467788999999999876544443
No 60
>KOG2880|consensus
Probab=34.45 E-value=1e+02 Score=25.18 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=27.7
Q ss_pred CcHHHHHHHHHH---HHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 28 MNAFMVWSRLQR---RKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 28 ~naf~lf~~~~r---~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
-|||+||.+-.- +++ ..|++.. -+-...-...+.|-+++-..-.++..+...+|..++.+|.
T Consensus 52 enafvLy~ry~tLfiEki-pkHrDy~--s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~ 116 (424)
T KOG2880|consen 52 ENAFVLYLRYITLFIEKI-PKHRDYR--SVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYD 116 (424)
T ss_pred chhhhHHHHHHHHHHHhc-ccCcchh--hhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 378888755432 222 2344432 1222222222333344444444455555555555555553
No 61
>PRK14280 chaperone protein DnaJ; Provisional
Probab=34.43 E-value=1e+02 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|..-++
T Consensus 22 k~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD 66 (376)
T PRK14280 22 KKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYD 66 (376)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHH
Confidence 3556666677788764 5678889999999999777544444
No 62
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=34.36 E-value=1e+02 Score=22.99 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q psy15633 52 SEISKRLGAEWKLLTENEKRPYIDEAKRLRA 82 (129)
Q Consensus 52 ~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~ 82 (129)
.+..+.|.+.+..|++++++...+.+++.++
T Consensus 13 ~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L~~ 43 (248)
T PF08367_consen 13 EEEKEKLAAYKASLSEEEKEKIIEQTKELKE 43 (248)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999998888743
No 63
>PF13945 NST1: Salt tolerance down-regulator
Probab=33.86 E-value=1.2e+02 Score=22.31 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q psy15633 51 NSEISKRLGAEWKLLTENEKRPYIDEAKR 79 (129)
Q Consensus 51 ~~eisk~l~~~Wk~ls~~eK~~y~~~a~~ 79 (129)
..+....|-+.|-.|+++||......-++
T Consensus 100 s~eEre~LkeFW~SL~eeERr~LVkIEKe 128 (190)
T PF13945_consen 100 SQEEREKLKEFWESLSEEERRSLVKIEKE 128 (190)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHhhHH
Confidence 44667789999999999999887754433
No 64
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=33.23 E-value=91 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHH
Q psy15633 52 SEISKRLGAEWKLLTENEKRPYIDE 76 (129)
Q Consensus 52 ~eisk~l~~~Wk~ls~~eK~~y~~~ 76 (129)
..+......++..|++++|+.|.++
T Consensus 75 ~~~~~~~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 75 EERAKAQHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 4456677789999999999988764
No 65
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=33.11 E-value=1.1e+02 Score=18.32 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=27.2
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCC--------------------HHHHHHHHHHHhhc
Q psy15633 27 PMNAFMVWSRLQRRKIAQDNPKMH--------------------NSEISKRLGAEWKL 64 (129)
Q Consensus 27 P~naf~lf~~~~r~~~~~~~p~~~--------------------~~eisk~l~~~Wk~ 64 (129)
|..++-.+..|.-..|...+|+.. -..|..+|-++|..
T Consensus 2 p~ga~~AL~~EL~kRl~~~yPd~~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe~we~ 59 (65)
T PF06183_consen 2 PAGALEALESELTKRLHRQYPDAEVRVRPGSANGLSVSGGKKDDKERIEEILQEMWED 59 (65)
T ss_dssp -TTHHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHCCCceEeeeecccCccccCCcCchHHHHHHHHHHHHHhc
Confidence 667888888888888998998842 14578888888864
No 66
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=33.09 E-value=41 Score=18.84 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhCCCCCH------HHHHHHHHHHhhcCCHH
Q psy15633 35 SRLQRRKIAQDNPKMHN------SEISKRLGAEWKLLTEN 68 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~------~eisk~l~~~Wk~ls~~ 68 (129)
.+.++..++.-||+... .+....|.+.|..|.+.
T Consensus 19 k~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 19 KKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 34556666777887654 35666677777776654
No 67
>PRK14295 chaperone protein DnaJ; Provisional
Probab=32.73 E-value=1.2e+02 Score=24.54 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYIDE 76 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~~ 76 (129)
.+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|...++.
T Consensus 27 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 27 KKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred HHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 3456666777788864 35778899999999998886655554
No 68
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=32.62 E-value=86 Score=17.83 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCC--H----HHHHHHHHHHhhcCCHHHH-HHH
Q psy15633 35 SRLQRRKIAQDNPKMH--N----SEISKRLGAEWKLLTENEK-RPY 73 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~--~----~eisk~l~~~Wk~ls~~eK-~~y 73 (129)
.+.++..++.-||+.. . .+....|.+.|..|++.++ +.|
T Consensus 18 k~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~Y 63 (64)
T PF00226_consen 18 KKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRY 63 (64)
T ss_dssp HHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhc
Confidence 4556777788888763 2 3788889999999975554 444
No 69
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=32.39 E-value=1.3e+02 Score=20.27 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=29.0
Q ss_pred HHHhhCCCCCH--------------HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q psy15633 41 KIAQDNPKMHN--------------SEISKRLGAEWKLLTENEKRPYIDEAKR 79 (129)
Q Consensus 41 ~~~~~~p~~~~--------------~eisk~l~~~Wk~ls~~eK~~y~~~a~~ 79 (129)
.+-.+||+++. .|+..+|+..|....-.+...|.+...-
T Consensus 49 ~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~V~~~~aT~eQ~~Fi~Ef~~ 101 (113)
T PF12290_consen 49 AVCEQNPELEFSQRFQIIREADAIVYDLEEVLASVWNQKATNEQIAFIEEFIG 101 (113)
T ss_pred HHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45577787764 5678889999999988888888765443
No 70
>KOG0713|consensus
Probab=32.23 E-value=1.3e+02 Score=24.22 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYIDEAK 78 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~~a~ 78 (129)
+.+|.-..+-||+.+ ..+--+.|+..|..|++++|.+-++.+-
T Consensus 35 kAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 35 KAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 455666667788755 5778888999999999888766665544
No 71
>PRK14284 chaperone protein DnaJ; Provisional
Probab=31.27 E-value=99 Score=25.01 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMHN-----SEISKRLGAEWKLLTENEKRPYIDE 76 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK~~y~~~ 76 (129)
.+.+|...+.-||+.+. .+..+.|.+.|..|++.+|..-++.
T Consensus 19 kkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 65 (391)
T PRK14284 19 KKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDR 65 (391)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 34567777778888753 5678899999999998776555544
No 72
>PHA03102 Small T antigen; Reviewed
Probab=31.00 E-value=1e+02 Score=21.81 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhCCCCC-HHHHHHHHHHHhhcCCHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH-NSEISKRLGAEWKLLTENEK 70 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~-~~eisk~l~~~Wk~ls~~eK 70 (129)
.+.+|..++.-||+.. ..+..+.|.+.|..|.+..+
T Consensus 25 KkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~ 61 (153)
T PHA03102 25 RKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVK 61 (153)
T ss_pred HHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHH
Confidence 4567777888899875 34567777888888776553
No 73
>PRK14288 chaperone protein DnaJ; Provisional
Probab=30.47 E-value=1.4e+02 Score=23.89 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMHN-----SEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+.+|...++-||+.+. .+.-+.|.+.+..|++.+|..-++
T Consensus 22 kayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD 66 (369)
T PRK14288 22 KSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYD 66 (369)
T ss_pred HHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 5567777788898753 467788999999999877654443
No 74
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=29.99 E-value=31 Score=21.47 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCH
Q psy15633 47 PKMHNSEISKRLGAEWKLLTE 67 (129)
Q Consensus 47 p~~~~~eisk~l~~~Wk~ls~ 67 (129)
+++.+..|++.||.-|+.|..
T Consensus 3 ~~~~l~~ia~~lG~dW~~LAr 23 (84)
T cd08317 3 ADIRLADISNLLGSDWPQLAR 23 (84)
T ss_pred ccchHHHHHHHHhhHHHHHHH
Confidence 566788999999999988753
No 75
>PRK14294 chaperone protein DnaJ; Provisional
Probab=29.95 E-value=1.4e+02 Score=23.90 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+.+|...+.-||+.+ ..+.-+.|.+.|..|++.++..-++
T Consensus 23 ~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD 67 (366)
T PRK14294 23 KSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYD 67 (366)
T ss_pred HHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 456777777888875 3467788999999999777554444
No 76
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=29.52 E-value=85 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=20.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHH
Q psy15633 59 GAEWKLLTENEKRPYIDEAKRLRAM 83 (129)
Q Consensus 59 ~~~Wk~ls~~eK~~y~~~a~~~k~~ 83 (129)
.+.|..|+++.|+...+.+.+..+.
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~ 237 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEY 237 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999998877765433
No 77
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=29.30 E-value=1.1e+02 Score=25.03 Aligned_cols=35 Identities=6% Similarity=-0.085 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 54 ISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 54 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
..+..-..|+.++..+|..+........+++.+++
T Consensus 6 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l 40 (443)
T cd07132 6 RAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEI 40 (443)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555567888888888887776666555555444
No 78
>PRK14286 chaperone protein DnaJ; Provisional
Probab=29.27 E-value=1.5e+02 Score=23.86 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|..-++
T Consensus 22 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 67 (372)
T PRK14286 22 KSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYD 67 (372)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3456777778889875 3467889999999999877554333
No 79
>PRK14276 chaperone protein DnaJ; Provisional
Probab=28.59 E-value=1.3e+02 Score=24.22 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+.+|...++-||+.+ ..+..+.|.+.|..|++.+|..-++
T Consensus 23 ~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 66 (380)
T PRK14276 23 KAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66 (380)
T ss_pred HHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHh
Confidence 456666677788754 4678889999999999877654444
No 80
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=27.24 E-value=1.6e+02 Score=18.23 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHH
Q psy15633 31 FMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLT----ENEKRPYIDEAKRLRAMH 84 (129)
Q Consensus 31 f~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls----~~eK~~y~~~a~~~k~~y 84 (129)
|-||.+.....+....|+.- .-+.+.--+.|+.|. ++-++.|.++..+....|
T Consensus 30 YalyKQAt~Gd~~~~~P~~~-d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 30 YALYKQATHGDCDTPRPGFF-DIEGRAKWDAWKALKGMSKEEAMREYIELVEELIPKY 86 (87)
T ss_dssp HHHHHHHHTSS--S-CTTTT-CHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCcch-hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 55666555544444445422 333444457798875 677888998888877766
No 81
>PRK14298 chaperone protein DnaJ; Provisional
Probab=26.95 E-value=1.3e+02 Score=24.20 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYIDE 76 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~ 76 (129)
+.+|...+.-||+.+ ..+.-+.|.+.|..|++.+|..-++.
T Consensus 24 ~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (377)
T PRK14298 24 KAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDR 68 (377)
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence 455666677788765 34566789999999998886555543
No 82
>KOG0715|consensus
Probab=26.51 E-value=1.6e+02 Score=22.89 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYIDEAKRL 80 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~ 80 (129)
..++...+.-||+.+ ..+....|.+.|..|++++|..=++.....
T Consensus 62 ~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 62 SAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred HHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 344555667788765 677888999999999988876666555444
No 83
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=25.55 E-value=1.1e+02 Score=23.00 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=18.9
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHH
Q psy15633 60 AEWKLLTENEKRPYIDEAKRLRAMHM 85 (129)
Q Consensus 60 ~~Wk~ls~~eK~~y~~~a~~~k~~y~ 85 (129)
+.|..||++.|+...+.+.+......
T Consensus 214 ~~w~~L~~e~q~~l~~~~~~~~~~~~ 239 (286)
T PF03480_consen 214 DWWDSLPDEDQEALDDAADEAEARAR 239 (286)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999998887776654433
No 84
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=25.01 E-value=1.6e+02 Score=24.21 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=24.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 56 KRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 56 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
+.....|+.++.++|..+...+.+..+++..++.
T Consensus 48 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~ 81 (478)
T cd07085 48 KAAFPAWSATPVLKRQQVMFKFRQLLEENLDELA 81 (478)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344679999999999988877776666655444
No 85
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.00 E-value=1.4e+02 Score=23.76 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=25.4
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15633 58 LGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPD 90 (129)
Q Consensus 58 l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 90 (129)
-...|..|++++|+...+.+.+......+...+
T Consensus 243 s~~~w~~L~~e~q~il~~aa~e~~~~~~~~~~~ 275 (332)
T COG1638 243 SKAFWDSLPEEDQTILLEAAKEAAEEQRKLVEE 275 (332)
T ss_pred cHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999988876655554433
No 86
>KOG1827|consensus
Probab=24.49 E-value=3.8 Score=35.33 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=40.2
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHH
Q psy15633 27 PMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEK 70 (129)
Q Consensus 27 P~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK 70 (129)
-+.+|++|..+.+..+-..+|+..+++++.++|.-|..|+..-|
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~v~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPTVGFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred CCccccccccccCceeeeeCCCcccceeEEeecCCcccCccccc
Confidence 56889999999999999999999999999999999999995444
No 87
>PRK14278 chaperone protein DnaJ; Provisional
Probab=24.23 E-value=1.6e+02 Score=23.65 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|...+.-||+.+ ..+.-+.|.+.|..|++.+|..-++
T Consensus 21 k~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD 65 (378)
T PRK14278 21 KRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVD 65 (378)
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhh
Confidence 3566777777888875 3456778999999998776554443
No 88
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=24.14 E-value=1.7e+02 Score=24.13 Aligned_cols=34 Identities=6% Similarity=0.148 Sum_probs=19.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 56 KRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 56 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
+..-..|+.++.++|..+...+.+..+++..++.
T Consensus 9 ~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~eela 42 (436)
T cd07122 9 RKAQREFATFSQEQVDKIVEAVAWAAADAAEELA 42 (436)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557777777776666655555555554443
No 89
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=23.88 E-value=1.6e+02 Score=24.11 Aligned_cols=37 Identities=8% Similarity=-0.032 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 53 EISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 53 eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
+..+.....|+.++.++|......+.+..+++..++.
T Consensus 6 ~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela 42 (442)
T cd07084 6 LAADISTKAARRLALPKRADFLARIIQRLAAKSYDIA 42 (442)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455566789999999998888777776666664443
No 90
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=23.85 E-value=1.6e+02 Score=23.88 Aligned_cols=34 Identities=9% Similarity=-0.014 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 55 SKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 55 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
.+..-..|..++..+|..+........+++..++
T Consensus 7 a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 40 (426)
T cd07087 7 LRETFLTGKTRSLEWRKAQLKALKRMLTENEEEI 40 (426)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444456777777777776666555555544443
No 91
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=23.74 E-value=1.6e+02 Score=23.99 Aligned_cols=35 Identities=17% Similarity=0.004 Sum_probs=19.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 55 SKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 55 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
.+..-..|+.++..+|..+.....+..+++..++.
T Consensus 7 a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~ 41 (434)
T cd07133 7 QKAAFLANPPPSLEERRDRLDRLKALLLDNQDALA 41 (434)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666555555554444433
No 92
>PF15581 Imm35: Immunity protein 35
Probab=23.72 E-value=1.9e+02 Score=18.66 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHH
Q psy15633 50 HNSEISKRLGAEWKLLTENEKRP 72 (129)
Q Consensus 50 ~~~eisk~l~~~Wk~ls~~eK~~ 72 (129)
+..-+..+|...|+.|++++=..
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~~ 53 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVLY 53 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Confidence 35668889999999999887433
No 93
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=23.64 E-value=1.4e+02 Score=16.18 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCC
Q psy15633 35 SRLQRRKIAQDNPKMHN-----SEISKRLGAEWKLLT 66 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls 66 (129)
.+.++..++.-||+... .+....|.+.|..|+
T Consensus 18 k~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 18 KKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 34566677777887653 345566666666654
No 94
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=23.41 E-value=1.7e+02 Score=18.63 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy15633 51 NSEISKRLGAEWKLLTENEKRPYIDEAKRL 80 (129)
Q Consensus 51 ~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~ 80 (129)
..+|+. --++=..|+++||+.|.+..++.
T Consensus 52 ~~eVtq-~p~LV~qMT~~EKEaYi~v~Q~~ 80 (86)
T PF11521_consen 52 YSEVTQ-RPELVAQMTPEEKEAYIQVGQEM 80 (86)
T ss_dssp HHHHHH--HHHHHHS-HHHHHHHHHHHHHH
T ss_pred hhhcCc-chHHHHHcCHHHHHHHHHHHHHH
Confidence 466661 12333689999999999877654
No 95
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=23.08 E-value=1.8e+02 Score=24.09 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 56 KRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 56 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
+.....|+.++.++|..+........+++.+++.
T Consensus 54 ~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela 87 (488)
T PRK13252 54 KQGQKIWAAMTAMERSRILRRAVDILRERNDELA 87 (488)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4445679999999998888776666666665544
No 96
>KOG0493|consensus
Probab=22.99 E-value=1.8e+02 Score=22.77 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCcHHHHHHHHHHHHHHhhC
Q psy15633 8 TYPNTLLSPEKK-IDDHIKRPMNAFMVWSRLQRRKIAQDN 46 (129)
Q Consensus 8 ~~p~~~~~~~~k-~~~~pkrP~naf~lf~~~~r~~~~~~~ 46 (129)
..|...+.++++ ....-|||.+||. .|....++.++
T Consensus 229 sGPR~Rk~kkkk~~~~eeKRPRTAFt---aeQL~RLK~EF 265 (342)
T KOG0493|consen 229 SGPRHRKPKKKKSSSKEEKRPRTAFT---AEQLQRLKAEF 265 (342)
T ss_pred CCcccccccccCCccchhcCcccccc---HHHHHHHHHHH
Confidence 345555555555 4567899999975 45555555554
No 97
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=1.8e+02 Score=23.67 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+.+|...++-||+.+ ..+--+.|.+.+..|+|.+|..-++
T Consensus 23 kAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD 67 (371)
T COG0484 23 KAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYD 67 (371)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhh
Confidence 345666667777765 4667888999999999888765554
No 98
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=22.81 E-value=96 Score=16.64 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=16.4
Q ss_pred HhhCCCCCHHHHHHHHHHHhhcCC
Q psy15633 43 AQDNPKMHNSEISKRLGAEWKLLT 66 (129)
Q Consensus 43 ~~~~p~~~~~eisk~l~~~Wk~ls 66 (129)
-.++|.++..+|++.++--+..++
T Consensus 12 l~~~~~~t~~ela~~~~is~~tv~ 35 (48)
T PF13412_consen 12 LRENPRITQKELAEKLGISRSTVN 35 (48)
T ss_dssp HHHCTTS-HHHHHHHHTS-HHHHH
T ss_pred HHHcCCCCHHHHHHHhCCCHHHHH
Confidence 356899999999999886554443
No 99
>PRK14292 chaperone protein DnaJ; Provisional
Probab=22.77 E-value=1.8e+02 Score=23.25 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+.+|...+.-||+.. ..+..+.|.+.+..|++.++...++
T Consensus 21 ~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd 64 (371)
T PRK14292 21 SAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64 (371)
T ss_pred HHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHh
Confidence 456666777788766 4567788999999998776544444
No 100
>PRK14290 chaperone protein DnaJ; Provisional
Probab=22.59 E-value=1.7e+02 Score=23.36 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCCCCC------HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH------NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~------~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+.+|...++-||+.+ ..+..+.|.+.|..|++.++..-++
T Consensus 22 ~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd 67 (365)
T PRK14290 22 KAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYD 67 (365)
T ss_pred HHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhc
Confidence 456666777888875 2366778999999999877554444
No 101
>PRK14277 chaperone protein DnaJ; Provisional
Probab=22.52 E-value=2.1e+02 Score=23.05 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|..-++
T Consensus 23 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD 68 (386)
T PRK14277 23 KKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYD 68 (386)
T ss_pred HHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3566777777888865 3457889999999999877654444
No 102
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=22.31 E-value=1.8e+02 Score=23.81 Aligned_cols=34 Identities=3% Similarity=0.062 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 55 SKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 55 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
.+.....|+.++.++|..+...+.+..+.+..++
T Consensus 8 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 41 (454)
T cd07129 8 AAAAFESYRALSPARRAAFLEAIADEIEALGDEL 41 (454)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444556888887777777766666555555443
No 103
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=22.11 E-value=2.3e+02 Score=23.16 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=20.2
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 62 WKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 62 Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
|..++-++|..+...+.+..+++..++.
T Consensus 37 w~~~~~~~R~~~l~~~a~~l~~~~~~la 64 (454)
T cd07118 37 WPRMSGAERAAVLLKVADLIRARRERLA 64 (454)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8888888888887776666666655543
No 104
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=22.07 E-value=1.9e+02 Score=23.44 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 56 KRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 56 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
+..-..|+.++.++|..+.....+..+.+.+++
T Consensus 31 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 63 (451)
T cd07150 31 YDAFPAWAATTPSERERILLKAAEIMERRADDL 63 (451)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 334457999998888888876666655555443
No 105
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=21.87 E-value=2e+02 Score=23.31 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 55 SKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 55 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
++..-..|+.++.++|..+.....+..+.+..++.
T Consensus 22 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela 56 (443)
T cd07152 22 AAAAQRAWAATPPRERAAVLRRAADLLEEHADEIA 56 (443)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445679999999999888777666665555543
No 106
>PRK10767 chaperone protein DnaJ; Provisional
Probab=21.52 E-value=2.2e+02 Score=22.75 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+.+|...+.-||+.+ ..+..+.|.+.|..|++.++..-++
T Consensus 23 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd 67 (371)
T PRK10767 23 KAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYD 67 (371)
T ss_pred HHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhh
Confidence 456777777888875 2357778999999998777644333
No 107
>PLN02150 terpene synthase/cyclase family protein
Probab=21.46 E-value=53 Score=21.19 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhcCCHHH
Q psy15633 51 NSEISKRLGAEWKLLTENE 69 (129)
Q Consensus 51 ~~eisk~l~~~Wk~ls~~e 69 (129)
..+|..++.+.|+.|+++-
T Consensus 25 ~~~i~~li~~~WK~iN~e~ 43 (96)
T PLN02150 25 VSELKKMIRDNYKIVMEEF 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5778999999999877653
No 108
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=21.38 E-value=96 Score=19.34 Aligned_cols=21 Identities=24% Similarity=0.639 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 50 HNSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 50 ~~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+..||.. |..|+++||..-..
T Consensus 28 t~~Ei~~-----W~~msd~Er~aVl~ 48 (74)
T COG3313 28 TRDEIFN-----WSSMSDDERRAVLR 48 (74)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHH
Confidence 3456665 99999998865443
No 109
>PRK14297 chaperone protein DnaJ; Provisional
Probab=21.34 E-value=1.5e+02 Score=23.86 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 36 RLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|..-++
T Consensus 23 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD 67 (380)
T PRK14297 23 KAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYD 67 (380)
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchh
Confidence 456666777788865 3467888999999999877554444
No 110
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=21.28 E-value=2e+02 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=24.4
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15633 59 GAEWKLLTENEKRPYIDEAKRLRAMHMKDHPD 90 (129)
Q Consensus 59 ~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 90 (129)
...|+.++-++|..+...+.+..+++.+++..
T Consensus 61 ~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~ 92 (482)
T PRK11241 61 LPAWRALTAKERANILRRWFNLMMEHQDDLAR 92 (482)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35699999999999888777777777666543
No 111
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=21.25 E-value=1.6e+02 Score=23.58 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=18.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHh
Q psy15633 56 KRLGAEWKLLTENEKRPYIDEAKRLRAMHMKD 87 (129)
Q Consensus 56 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~ 87 (129)
+.....|..++.++|..+.....+..+++.++
T Consensus 4 ~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 35 (397)
T cd07077 4 KNAQRTLAVNHDEQRDLIINAIANALYDTRQR 35 (397)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777776665555544444443
No 112
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=21.02 E-value=2.1e+02 Score=23.44 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=22.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 56 KRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 56 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
+.....|..++.++|..+...+....+++.+++
T Consensus 47 ~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~el 79 (478)
T cd07131 47 REAFPEWRKVPAPRRAEYLFRAAELLKKRKEEL 79 (478)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457888888888888776666555555554
No 113
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=20.91 E-value=2e+02 Score=23.44 Aligned_cols=34 Identities=9% Similarity=-0.024 Sum_probs=20.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 55 SKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 55 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
++..-..|+.++.++|..+...+....+++.+++
T Consensus 8 a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l 41 (432)
T cd07137 8 LRETFRSGRTRSAEWRKSQLKGLLRLVDENEDDI 41 (432)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556777777777776666555555554443
No 114
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=20.76 E-value=2.1e+02 Score=23.27 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 55 SKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 55 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
.+.....|+.++.++|..+...+.+..+.+..++
T Consensus 28 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l 61 (448)
T TIGR01780 28 AYEAFKTWKNTTAKERSSLLRKWYNLMMENKDDL 61 (448)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444567999999999888877766666666555
No 115
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=20.64 E-value=2.2e+02 Score=23.24 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=23.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 56 KRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 56 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
+.....|+.++.++|..+.....+..+++..++
T Consensus 29 ~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 61 (457)
T cd07108 29 KAAFPEWAATPARERGKLLARIADALEARSEEL 61 (457)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 334567999998888888777666666666555
No 116
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=20.49 E-value=2.2e+02 Score=23.42 Aligned_cols=34 Identities=3% Similarity=0.062 Sum_probs=23.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15633 57 RLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPD 90 (129)
Q Consensus 57 ~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 90 (129)
..-..|+.++.++|..+.....+..+++.+++..
T Consensus 40 ~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 73 (462)
T PRK13968 40 AGFRDWRETNIDYRAQKLRDIGKALRARSEEMAQ 73 (462)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3345699998888888777766666666655543
No 117
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=20.48 E-value=2e+02 Score=16.84 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHhhcCCHHH---H--HHHHHHHHHHHHHHHH
Q psy15633 48 KMHNSEISKRLGAEWKLLTENE---K--RPYIDEAKRLRAMHMK 86 (129)
Q Consensus 48 ~~~~~eisk~l~~~Wk~ls~~e---K--~~y~~~a~~~k~~y~~ 86 (129)
.++..|-..++...|.+|+.+. - .-|.+.+.+....|..
T Consensus 2 ~L~~~ERl~Lve~LwdSL~~~~~~~~~~~~~~~el~~R~~~~~~ 45 (63)
T TIGR02574 2 ALSPDERIQLVEDIWDSIAAEAKHLILTEAQKAELDRRLADYKA 45 (63)
T ss_pred CCCHHHHHHHHHHHHHHhccCcccCCCCHHHHHHHHHHHHHHHc
Confidence 3567888899999999998332 1 4566666666666654
No 118
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=20.48 E-value=2.2e+02 Score=22.56 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKRP 72 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~ 72 (129)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 18 k~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 18 KKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred HHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence 3456666677788875 4567788999999998877543
No 119
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=20.35 E-value=2.3e+02 Score=22.79 Aligned_cols=34 Identities=9% Similarity=0.188 Sum_probs=21.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 55 SKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 55 sk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
++..-..|+.++.++|..+.....+..+.+.+++
T Consensus 9 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 42 (431)
T cd07104 9 AAAAQKAWAATPPQERAAILRKAAEILEERRDEI 42 (431)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 4445567888888887777766555544444433
Done!