Query psy15633
Match_columns 129
No_of_seqs 201 out of 1066
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:42:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4euw_A Transcription factor SO 100.0 6.1E-29 2.1E-33 165.5 11.0 93 8-100 14-106 (106)
2 1j46_A SRY, sex-determining re 100.0 2.5E-28 8.4E-33 156.5 12.4 84 20-103 1-84 (85)
3 3u2b_C Transcription factor SO 100.0 2.1E-28 7.1E-33 154.5 10.8 78 22-99 1-78 (79)
4 3f27_D Transcription factor SO 100.0 2.8E-28 9.6E-33 155.3 10.8 80 20-99 3-82 (83)
5 2lef_A LEF-1 HMG, protein (lym 100.0 8.2E-28 2.8E-32 154.3 12.3 84 22-105 1-84 (86)
6 1gt0_D Transcription factor SO 100.0 8.2E-28 2.8E-32 152.2 11.5 79 22-100 1-79 (80)
7 1hry_A Human SRY; DNA, DNA-bin 100.0 6.8E-28 2.3E-32 151.2 9.8 76 20-95 1-76 (76)
8 2e6o_A HMG box-containing prot 100.0 1.9E-27 6.4E-32 153.0 12.1 78 16-93 10-87 (87)
9 1i11_A Transcription factor SO 99.9 6.2E-28 2.1E-32 153.2 9.0 79 21-99 2-80 (81)
10 1wz6_A HMG-box transcription f 99.9 2.2E-27 7.5E-32 151.0 9.6 80 19-98 3-82 (82)
11 1k99_A Upstream binding factor 99.9 3.9E-26 1.3E-30 150.2 8.8 83 15-97 2-91 (99)
12 1hme_A High mobility group pro 99.9 5.9E-26 2E-30 142.6 8.8 76 18-93 1-76 (77)
13 2co9_A Thymus high mobility gr 99.9 8.5E-26 2.9E-30 149.2 9.0 84 14-97 8-91 (102)
14 4a3n_A Transcription factor SO 99.9 1.4E-25 4.8E-30 138.6 9.0 71 22-92 1-71 (71)
15 2eqz_A High mobility group pro 99.9 2.1E-25 7.4E-30 143.0 9.5 80 13-92 5-86 (86)
16 2crj_A SWI/SNF-related matrix- 99.9 6.7E-26 2.3E-30 147.1 7.0 79 18-96 2-80 (92)
17 1wgf_A Upstream binding factor 99.9 3.4E-25 1.2E-29 143.2 8.8 82 10-91 7-88 (90)
18 1aab_A High mobility group pro 99.9 4.1E-25 1.4E-29 140.7 7.2 76 18-93 2-79 (83)
19 2cs1_A PMS1 protein homolog 1; 99.9 7.8E-25 2.7E-29 142.1 8.4 77 19-95 3-79 (92)
20 1wxl_A Single-strand recogniti 99.9 5.5E-24 1.9E-28 132.5 8.5 71 21-93 1-71 (73)
21 1cg7_A Protein (NON histone pr 99.9 2.9E-25 9.8E-30 144.4 2.5 79 14-92 11-89 (93)
22 1ckt_A High mobility group 1 p 99.9 6.4E-24 2.2E-28 131.2 8.0 69 23-91 1-71 (71)
23 3nm9_A HMG-D, high mobility gr 99.9 4.8E-24 1.6E-28 132.7 6.2 69 22-92 2-70 (73)
24 2lhj_A High mobility group pro 99.9 8.7E-25 3E-29 143.1 -0.1 79 14-92 13-93 (97)
25 2gzk_A Sex-determining region 99.9 1.2E-21 3.9E-26 138.2 13.0 83 21-103 2-84 (159)
26 2yrq_A High mobility group pro 99.9 8.7E-22 3E-26 140.7 11.9 80 15-94 7-88 (173)
27 1v64_A Nucleolar transcription 99.9 1.7E-22 5.8E-27 134.7 7.6 78 12-93 5-83 (108)
28 3fgh_A Transcription factor A, 99.9 1.4E-22 4.8E-27 124.1 6.1 66 22-91 1-66 (67)
29 2gzk_A Sex-determining region 99.9 2.5E-22 8.6E-27 141.6 7.6 77 16-92 81-157 (159)
30 2yrq_A High mobility group pro 99.9 2.4E-22 8.1E-27 143.6 7.5 78 16-93 94-171 (173)
31 2d7l_A WD repeat and HMG-box D 99.9 2.5E-22 8.5E-27 127.6 6.6 63 19-81 1-64 (81)
32 1l8y_A Upstream binding factor 99.9 1E-21 3.5E-26 126.8 8.2 71 22-93 3-73 (91)
33 2yuk_A Myeloid/lymphoid or mix 99.8 3.7E-22 1.3E-26 128.8 2.2 69 16-88 15-85 (90)
34 2cto_A Novel protein; high mob 99.8 4.8E-21 1.6E-25 124.5 7.0 70 18-89 5-77 (93)
35 1v63_A Nucleolar transcription 99.8 5.9E-21 2E-25 125.8 6.9 73 19-93 4-76 (101)
36 3tmm_A Transcription factor A, 99.8 4.6E-21 1.6E-25 143.4 5.3 76 17-92 35-110 (238)
37 3tq6_A Transcription factor A, 99.8 6E-20 2.1E-24 135.4 6.2 73 20-92 6-78 (214)
38 3tq6_A Transcription factor A, 99.7 2.1E-19 7.3E-24 132.5 1.1 72 19-94 110-181 (214)
39 3tmm_A Transcription factor A, 99.7 1.6E-19 5.4E-24 135.0 -0.3 73 18-94 141-213 (238)
40 2qgu_A Probable signal peptide 83.5 0.95 3.2E-05 32.5 3.4 46 47-92 70-117 (211)
41 2yua_A Williams-beuren syndrom 61.8 19 0.00067 22.1 5.1 38 35-72 35-77 (99)
42 2o37_A Protein SIS1; HSP40, J- 51.7 30 0.001 20.9 4.7 41 35-75 26-68 (92)
43 1hdj_A Human HSP40, HDJ-1; mol 49.8 35 0.0012 19.6 5.4 37 35-71 21-61 (77)
44 2och_A Hypothetical protein DN 49.0 30 0.001 19.8 4.2 37 35-71 26-64 (73)
45 2dn9_A DNAJ homolog subfamily 47.1 27 0.00093 20.2 3.8 36 35-70 25-65 (79)
46 2ctw_A DNAJ homolog subfamily 46.2 35 0.0012 21.3 4.5 41 35-75 35-80 (109)
47 2ctq_A DNAJ homolog subfamily 44.0 37 0.0013 21.3 4.3 41 35-75 38-83 (112)
48 2cug_A Mkiaa0962 protein; DNAJ 42.0 45 0.0015 19.8 4.4 45 26-70 15-74 (88)
49 3o39_A Periplasmic protein rel 42.0 39 0.0013 21.5 4.2 26 54-79 80-105 (108)
50 2ctp_A DNAJ homolog subfamily 41.9 44 0.0015 19.2 4.2 36 35-70 25-64 (78)
51 3itf_A Periplasmic adaptor pro 41.2 38 0.0013 22.7 4.2 32 54-85 108-139 (145)
52 2dmx_A DNAJ homolog subfamily 36.9 51 0.0017 19.7 4.0 36 35-70 27-68 (92)
53 2ctr_A DNAJ homolog subfamily 34.7 37 0.0013 20.2 3.1 36 35-70 25-64 (88)
54 2lgw_A DNAJ homolog subfamily 33.7 73 0.0025 19.5 4.4 38 35-72 20-63 (99)
55 3nm8_A Tyrosinase; TYPE3 coppe 32.7 39 0.0013 25.4 3.5 23 60-82 9-31 (303)
56 2ys8_A RAB-related GTP-binding 30.4 49 0.0017 19.8 3.1 34 36-69 46-83 (90)
57 1j1d_B Troponin T, TNT; THIN f 30.3 1.1E+02 0.0036 19.5 5.7 50 34-85 29-78 (106)
58 2ej7_A HCG3 gene; HCG3 protein 27.2 39 0.0013 19.7 2.2 36 35-70 27-68 (82)
59 1b0n_A Protein (SINR protein); 25.8 1.1E+02 0.0037 18.1 4.3 32 52-83 76-108 (111)
60 3oeo_A Spheroplast protein Y; 23.8 67 0.0023 21.1 3.1 28 54-81 96-123 (138)
61 2atm_A Hyaluronoglucosaminidas 23.6 2.4E+02 0.0083 21.5 6.5 44 30-84 121-164 (331)
62 3fxb_A Trap dicarboxylate tran 22.8 91 0.0031 23.1 4.0 22 60-81 232-253 (326)
63 3awu_A Tyrosinase; tyrosinase, 22.6 71 0.0024 23.6 3.3 21 61-81 6-26 (281)
64 1fcq_A Hyaluronoglucosaminidas 22.3 2.6E+02 0.009 21.5 6.5 43 30-83 125-167 (350)
65 1x2l_A CUT-like 2, homeobox pr 22.0 95 0.0033 19.5 3.3 32 47-78 45-78 (101)
66 1bq0_A DNAJ, HSP40; chaperone, 22.0 44 0.0015 20.5 1.8 36 35-70 21-61 (103)
67 3mhp_C TIC62_peptide, ferredox 21.1 12 0.00042 17.7 -0.8 11 24-34 2-12 (26)
68 3u65_B TP33 protein; tetratric 20.9 91 0.0031 23.2 3.6 22 60-81 235-256 (328)
69 3lns_A Benzaldehyde dehydrogen 20.4 1.4E+02 0.0046 23.4 4.7 46 42-87 18-69 (457)
70 2xwv_A Sialic acid-binding per 20.1 1.3E+02 0.0043 22.1 4.3 22 59-80 220-241 (312)
No 1
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.96 E-value=6.1e-29 Score=165.50 Aligned_cols=93 Identities=54% Similarity=0.993 Sum_probs=71.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHh
Q psy15633 8 TYPNTLLSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKD 87 (129)
Q Consensus 8 ~~p~~~~~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~ 87 (129)
+..+++.....+++++||||+||||||++++|.+++.++|++++.+|+++||++|+.|+++||++|.++|++++++|+++
T Consensus 14 ~~~~~~~~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e 93 (106)
T 4euw_A 14 KMSENLYFQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKD 93 (106)
T ss_dssp --------------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCc
Q psy15633 88 HPDYKYRPRRKPK 100 (129)
Q Consensus 88 ~~~yk~~p~~~~~ 100 (129)
+++|+|+|+++++
T Consensus 94 ~~~Yky~PrrkKs 106 (106)
T 4euw_A 94 HPDYKYQPRRRKS 106 (106)
T ss_dssp CTTCCC-------
T ss_pred hhhcCcCCCCCCC
Confidence 9999999998763
No 2
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.96 E-value=2.5e-28 Score=156.46 Aligned_cols=84 Identities=63% Similarity=1.087 Sum_probs=80.3
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q psy15633 20 IDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRKP 99 (129)
Q Consensus 20 ~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~~~ 99 (129)
.+++||||+||||||++++|..|+.+||++++.+|+++||++|+.|+++||++|.++|+.++++|..++++|+|+|++++
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr~~ 80 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKA 80 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCcc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q psy15633 100 KTLR 103 (129)
Q Consensus 100 ~~~~ 103 (129)
+..+
T Consensus 81 ~~~~ 84 (85)
T 1j46_A 81 KMLP 84 (85)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7654
No 3
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.96 E-value=2.1e-28 Score=154.49 Aligned_cols=78 Identities=67% Similarity=1.182 Sum_probs=74.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q psy15633 22 DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRKP 99 (129)
Q Consensus 22 ~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~~~ 99 (129)
++||||+||||||++++|..|+.++|++++.+|+++||++|+.|+++||++|.++|++++++|.+++++|+|+|+++.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk~~ 78 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKV 78 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999865
No 4
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.96 E-value=2.8e-28 Score=155.29 Aligned_cols=80 Identities=59% Similarity=1.129 Sum_probs=73.5
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q psy15633 20 IDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRKP 99 (129)
Q Consensus 20 ~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~~~ 99 (129)
.+++||||+||||||++++|..|+.+||++++.+|+++||++|+.|+++||++|.++|+.++++|.+++++|+|+|++++
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~kk 82 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 82 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC--
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999876
No 5
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.95 E-value=8.2e-28 Score=154.27 Aligned_cols=84 Identities=30% Similarity=0.547 Sum_probs=78.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcc
Q psy15633 22 DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRKPKT 101 (129)
Q Consensus 22 ~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~~~~~ 101 (129)
++|+||+||||||++++|..|+.+||++++.+|+++||++|+.|+++||++|.++|+.++++|..++++|+|+|+.+++.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~~~k 80 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKK 80 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999877655
Q ss_pred cccC
Q psy15633 102 LRKD 105 (129)
Q Consensus 102 ~~~~ 105 (129)
+++.
T Consensus 81 krkk 84 (86)
T 2lef_A 81 KRKR 84 (86)
T ss_dssp CSSC
T ss_pred cccc
Confidence 5443
No 6
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.95 E-value=8.2e-28 Score=152.22 Aligned_cols=79 Identities=86% Similarity=1.389 Sum_probs=76.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCc
Q psy15633 22 DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRKPK 100 (129)
Q Consensus 22 ~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~~~~ 100 (129)
++||||+||||||++++|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|..++++|+|+|+++++
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~~k 79 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK 79 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999998765
No 7
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.95 E-value=6.8e-28 Score=151.16 Aligned_cols=76 Identities=63% Similarity=1.122 Sum_probs=72.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy15633 20 IDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRP 95 (129)
Q Consensus 20 ~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p 95 (129)
|+++||||+||||||++++|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|..++++|+|+|
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999987
No 8
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=152.99 Aligned_cols=78 Identities=35% Similarity=0.478 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 16 PEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 16 ~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
.+.+|+++||||+||||||++++|.+|+.+||++++.+|+++||++|+.|+++||++|+++|++++++|.+++|+|+|
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yky 87 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK 87 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 577899999999999999999999999999999999999999999999999999999999999999999999999986
No 9
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.95 E-value=6.2e-28 Score=153.18 Aligned_cols=79 Identities=58% Similarity=0.996 Sum_probs=69.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q psy15633 21 DDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRKP 99 (129)
Q Consensus 21 ~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~~~ 99 (129)
.++||||+||||||++++|..|+.+||++++.+|+++||++|+.|+++||++|.++|++++++|.+++|+|+|+|++++
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~~~ 80 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 80 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--------
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998764
No 10
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.95 E-value=2.2e-27 Score=150.96 Aligned_cols=80 Identities=31% Similarity=0.588 Sum_probs=77.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q psy15633 19 KIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRK 98 (129)
Q Consensus 19 k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~~ 98 (129)
.++++||||+||||||++++|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|.+++++|+|+|++.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~~~ 82 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSSG 82 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999874
No 11
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.93 E-value=3.9e-26 Score=150.17 Aligned_cols=83 Identities=29% Similarity=0.458 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-------HHHh
Q psy15633 15 SPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAM-------HMKD 87 (129)
Q Consensus 15 ~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~-------y~~~ 87 (129)
.++++|++.||||+||||||+++.|.+|+.+||++++.+|+++||++|+.||++||++|.++|+.++++ |...
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999 5556
Q ss_pred CCCCCCCCCC
Q psy15633 88 HPDYKYRPRR 97 (129)
Q Consensus 88 ~~~yk~~p~~ 97 (129)
+|+|+|+|+.
T Consensus 82 ~P~~~~~~~~ 91 (99)
T 1k99_A 82 HPDLIQNAKK 91 (99)
T ss_dssp CCCCSCCCCC
T ss_pred CCCccCCCcc
Confidence 6777676654
No 12
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.93 E-value=5.9e-26 Score=142.61 Aligned_cols=76 Identities=29% Similarity=0.513 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 18 ~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
++|++.||||+||||||+++.|..++.+||++++.+|+++||++|+.|++++|++|.++|+.++++|.+++++|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999964
No 13
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.93 E-value=8.5e-26 Score=149.24 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=79.1
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 14 LSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 14 ~~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
..++++|++.||||+||||||++++|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|..+|++|++
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q psy15633 94 RPRR 97 (129)
Q Consensus 94 ~p~~ 97 (129)
.+..
T Consensus 88 ~~~~ 91 (102)
T 2co9_A 88 SLVS 91 (102)
T ss_dssp HHTS
T ss_pred hccc
Confidence 6544
No 14
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.93 E-value=1.4e-25 Score=138.62 Aligned_cols=71 Identities=59% Similarity=1.113 Sum_probs=63.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 22 DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 22 ~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
++||||+||||||++++|..++.++|++++.+|+++||++|+.|++++|++|.++|+.++++|.+++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999995
No 15
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=142.99 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15633 13 LLSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMH--NSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPD 90 (129)
Q Consensus 13 ~~~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~--~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 90 (129)
.....++|++.||||+||||||++++|.+|+.+||+++ +.||+++||++|+.|+++||++|+++|+.++++|..+|+.
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456889999999999999999999999999999987 6999999999999999999999999999999999999988
Q ss_pred CC
Q psy15633 91 YK 92 (129)
Q Consensus 91 yk 92 (129)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 84
No 16
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.92 E-value=6.7e-26 Score=147.10 Aligned_cols=79 Identities=28% Similarity=0.458 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy15633 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPR 96 (129)
Q Consensus 18 ~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~ 96 (129)
.+|+++||||+||||||++++|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|.+++++|++.+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999987653
No 17
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=3.4e-25 Score=143.23 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 10 PNTLLSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 10 p~~~~~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
+-....++++|+++||||+||||||++++|..|+.+||++++.+|+++||++|+.|+++||++|+++|+.++++|.++|.
T Consensus 7 ~k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 7 GKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp CSSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567789999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy15633 90 DY 91 (129)
Q Consensus 90 ~y 91 (129)
.+
T Consensus 87 ~~ 88 (90)
T 1wgf_A 87 PS 88 (90)
T ss_dssp SC
T ss_pred Hh
Confidence 75
No 18
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.92 E-value=4.1e-25 Score=140.69 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=72.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMH--NSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 18 ~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~--~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
++|++.||||+||||||++++|.+|+.+||+++ +.+|+++||++|+.|+++||++|.++|+.++++|..++++|+-
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 79 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 79 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999987 5999999999999999999999999999999999999999953
No 19
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=7.8e-25 Score=142.05 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=74.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy15633 19 KIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRP 95 (129)
Q Consensus 19 k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p 95 (129)
.++++||||+||||||++++|.+|+.+||++++.+|+++||++|+.|+++||++|.++|++++++|.+++++|+.+.
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~ 79 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQE 79 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999997754
No 20
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.90 E-value=5.5e-24 Score=132.46 Aligned_cols=71 Identities=31% Similarity=0.513 Sum_probs=68.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 21 DDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 21 ~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
|+.||||+||||||++++|.+|+.+||++++.||+++||++|+.| ++|++|.++|+.++++|..++++|+-
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999999999999999 89999999999999999999999953
No 21
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.90 E-value=2.9e-25 Score=144.41 Aligned_cols=79 Identities=28% Similarity=0.499 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 14 LSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 14 ~~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
..++++|++.|+||+||||||++++|..|+.+||++++.+|+++||++|+.|+++||++|.++|+.++++|..++++|+
T Consensus 11 ~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455789999999999999999999999999999999999999999999999999999999999999999999999985
No 22
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.90 E-value=6.4e-24 Score=131.25 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=66.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy15633 23 HIKRPMNAFMVWSRLQRRKIAQDNPKMHN--SEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDY 91 (129)
Q Consensus 23 ~pkrP~naf~lf~~~~r~~~~~~~p~~~~--~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 91 (129)
+||||+||||||++++|..++.+||++++ .+|+++||++|+.|++++|++|.++|+.++++|.+++..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999875 9999999999999999999999999999999999999987
No 23
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.90 E-value=4.8e-24 Score=132.74 Aligned_cols=69 Identities=25% Similarity=0.551 Sum_probs=67.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 22 DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 22 ~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
+.||||+||||||++++|..|+.+||++++.+|+++||++|+.|++ |++|.++|++++++|++++++|+
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~ 70 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFE 70 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998 99999999999999999999985
No 24
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.89 E-value=8.7e-25 Score=143.10 Aligned_cols=79 Identities=27% Similarity=0.519 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy15633 14 LSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMH--NSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDY 91 (129)
Q Consensus 14 ~~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~--~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 91 (129)
...+++|++.||||+||||||++++|..|+.+||+++ +.+|+++||++|+.|+++||++|.++|+.++++|..++++|
T Consensus 13 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 13 PRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp TTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred C
Q psy15633 92 K 92 (129)
Q Consensus 92 k 92 (129)
+
T Consensus 93 ~ 93 (97)
T 2lhj_A 93 A 93 (97)
T ss_dssp H
T ss_pred H
Confidence 5
No 25
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.87 E-value=1.2e-21 Score=138.15 Aligned_cols=83 Identities=58% Similarity=1.010 Sum_probs=77.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCc
Q psy15633 21 DDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRKPK 100 (129)
Q Consensus 21 ~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~p~~~~~ 100 (129)
+++||||+||||||+.+.+.+|..+||++++.||+++||++|+.|+++||++|.++|..++++|..++++|.+.++++++
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~kk 81 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKK 81 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCCCGG
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999998876544
Q ss_pred ccc
Q psy15633 101 TLR 103 (129)
Q Consensus 101 ~~~ 103 (129)
..+
T Consensus 82 ~~k 84 (159)
T 2gzk_A 82 KFK 84 (159)
T ss_dssp GSC
T ss_pred ccc
Confidence 433
No 26
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=8.7e-22 Score=140.65 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 15 SPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPK--MHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 15 ~~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~--~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
...++|+++||||+|||+||++++|.+|+.+||+ +++.+|+++||++|+.|+++||++|.++|..++++|..++++|.
T Consensus 7 k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 86 (173)
T 2yrq_A 7 GMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 86 (173)
T ss_dssp SSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4567899999999999999999999999999999 68999999999999999999999999999999999999999997
Q ss_pred CC
Q psy15633 93 YR 94 (129)
Q Consensus 93 ~~ 94 (129)
..
T Consensus 87 ~~ 88 (173)
T 2yrq_A 87 PP 88 (173)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 27
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=1.7e-22 Score=134.73 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCCC-CCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Q psy15633 12 TLLSPEKKIDDHI-KRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPD 90 (129)
Q Consensus 12 ~~~~~~~k~~~~p-krP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~ 90 (129)
+....+.+++++| |||+|||+||++++|.+|+ ++++.||+++||++|+.|+++||++|.++|+.++++|..+++.
T Consensus 5 ~~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 80 (108)
T 1v64_A 5 SSGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLR 80 (108)
T ss_dssp SSCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999 9999999999999999886 7899999999999999999999999999999999999999999
Q ss_pred CCC
Q psy15633 91 YKY 93 (129)
Q Consensus 91 yk~ 93 (129)
|..
T Consensus 81 Y~~ 83 (108)
T 1v64_A 81 FLE 83 (108)
T ss_dssp HHH
T ss_pred HHh
Confidence 965
No 28
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=124.07 Aligned_cols=66 Identities=27% Similarity=0.420 Sum_probs=62.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy15633 22 DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDY 91 (129)
Q Consensus 22 ~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~y 91 (129)
++||||+|||+||++++|.+++.++| .+|+++||++|+.|+++||++|.++|+.++++|+.++.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999987765 7999999999999999999999999999999999999877
No 29
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.87 E-value=2.5e-22 Score=141.56 Aligned_cols=77 Identities=29% Similarity=0.518 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 16 PEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 16 ~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
++.+|++.||||+|||+||++++|..|+.+||++++.+|+++||++|++|++++|++|.++|..++++|..++++|+
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 157 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999985
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=143.60 Aligned_cols=78 Identities=28% Similarity=0.502 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 16 PEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 16 ~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
.+.+|++.||||+||||||++++|..|+.+||++++.+|+++||++|+.|++++|++|.++|+.++++|..++++|+.
T Consensus 94 k~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp CSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455799999999999999999999999999999999999999999999999999999999999999999999999965
No 31
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=127.58 Aligned_cols=63 Identities=24% Similarity=0.440 Sum_probs=60.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy15633 19 KIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMH-NSEISKRLGAEWKLLTENEKRPYIDEAKRLR 81 (129)
Q Consensus 19 k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k 81 (129)
++++.||||+||||||++++|.+|+.+||+++ +.||+++||++|+.|+++||++|+++|+.+.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999998 9999999999999999999999999999883
No 32
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.86 E-value=1e-21 Score=126.85 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=68.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 22 DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 22 ~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
+.|+||+|||+||+++.|..++.++|+ ++.+|++.||++|+.|+++||++|+++|..++++|++++..|+.
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~ 73 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA 73 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999999999999 99999999999999999999999999999999999999999954
No 33
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-22 Score=128.84 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q psy15633 16 PEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMH--NSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDH 88 (129)
Q Consensus 16 ~~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~--~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 88 (129)
+.++|++.||||+|||||||+++|.+|+.+||+++ +.||+ ++|+.|+++||++|+++|++++++|..+-
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~~ 85 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRINK 85 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 34689999999999999999999999999999999 99998 99999999999999999999999998753
No 34
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.8e-21 Score=124.47 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15633 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRL---GAEWKLLTENEKRPYIDEAKRLRAMHMKDHP 89 (129)
Q Consensus 18 ~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l---~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~ 89 (129)
..+.++||||+||||||++++|.+|+.+ ++++.||+++| |++|+.|+++||++|+++|++++++|++++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4567899999999999999999999998 78999999999 9999999999999999999999999999873
No 35
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.83 E-value=5.9e-21 Score=125.83 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=65.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy15633 19 KIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKY 93 (129)
Q Consensus 19 k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~ 93 (129)
....+||||+||||||+++++. ..+++++++.||+++||++|+.|+++||++|+++|++++++|+++|+.|.-
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 76 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVK 76 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467799999999999999965 345667889999999999999999999999999999999999999999974
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.82 E-value=4.6e-21 Score=143.37 Aligned_cols=76 Identities=18% Similarity=0.417 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 17 EKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 17 ~~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
..++++.||||+|||+||++++|.+|+.+||++++.||+++||++|+.|+++||++|+++|..++++|+++|..|.
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~ 110 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFK 110 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999995
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.79 E-value=6e-20 Score=135.38 Aligned_cols=73 Identities=19% Similarity=0.440 Sum_probs=70.8
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15633 20 IDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYK 92 (129)
Q Consensus 20 ~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk 92 (129)
.++.||||+|||+||+++.|.+|+.+||++++.||+++||++|+.|+++||++|+++|..++++|.+++..|.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~ 78 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFK 78 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhc
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999995
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.74 E-value=2.1e-19 Score=132.46 Aligned_cols=72 Identities=25% Similarity=0.380 Sum_probs=66.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy15633 19 KIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYR 94 (129)
Q Consensus 19 k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~ 94 (129)
+|++.||||+|||+||++++|..++.++| .+|+++||++|++|++++|++|.++|.+++++|..++++|+..
T Consensus 110 kdp~~PKrP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 110 TLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSSCSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccccchhhhhHHHHHHhhccCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999998866655 5999999999999999999999999999999999999999854
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.6e-19 Score=135.04 Aligned_cols=73 Identities=25% Similarity=0.365 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy15633 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHMKDHPDYKYR 94 (129)
Q Consensus 18 ~k~~~~pkrP~naf~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~~~yk~~ 94 (129)
.+|++.||||+|||+||++++|.+++.++| .+|+++||++|++|++++|++|+++|.+++++|+++++.|+..
T Consensus 141 ~kdp~~PKrP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 141 LTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHTTTSCCSSH----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999999998876655 5999999999999999999999999999999999999999864
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=83.45 E-value=0.95 Score=32.45 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=36.8
Q ss_pred CCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHHHH-HHHHHHHhCCCCC
Q psy15633 47 PKMHNSEISKR-LGAEWKLLTENEKRPYIDEAKR-LRAMHMKDHPDYK 92 (129)
Q Consensus 47 p~~~~~eisk~-l~~~Wk~ls~~eK~~y~~~a~~-~k~~y~~~~~~yk 92 (129)
|..++..+++. ||..|+.+++++++.|.+.... ....|-..+..|.
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~ 117 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVR 117 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44566777665 6899999999999999987766 4677888888885
No 41
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.77 E-value=19 Score=22.07 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHhhcCCHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH-----NSEISKRLGAEWKLLTENEKRP 72 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~-----~~eisk~l~~~Wk~ls~~eK~~ 72 (129)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp HHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4566777888899876 3678899999999998776543
No 42
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=51.71 E-value=30 Score=20.87 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH--NSEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~--~~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..-.+
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4566777888899864 4678889999999998766544333
No 43
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=49.78 E-value=35 Score=19.63 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEKR 71 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~ 71 (129)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++.
T Consensus 21 k~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 21 KRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp HHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 3556777778888864 568889999999999876643
No 44
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=49.01 E-value=30 Score=19.78 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhCCCCCH--HHHHHHHHHHhhcCCHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMHN--SEISKRLGAEWKLLTENEKR 71 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~--~eisk~l~~~Wk~ls~~eK~ 71 (129)
.+.+|..++.-||+... .+..+.|.+.|..|++.++.
T Consensus 26 k~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 26 KKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp HHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 35567777788998653 57888999999999866543
No 45
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.10 E-value=27 Score=20.21 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCCHHHH
Q psy15633 35 SRLQRRKIAQDNPKMHN-----SEISKRLGAEWKLLTENEK 70 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK 70 (129)
.+.+|..++.-||+... .+..+.|.+.|..|++..+
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 65 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 45667777888888553 5788889999999876554
No 46
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.21 E-value=35 Score=21.29 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMHN-----SEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|..++.-||+... .+..+.|.+.|..|++..+..-.+
T Consensus 35 k~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 35 KKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp HHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 45667778888998763 578889999999998665544443
No 47
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.02 E-value=37 Score=21.28 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMHN-----SEISKRLGAEWKLLTENEKRPYID 75 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK~~y~~ 75 (129)
.+.+|...+.-||+... .+..+.|.+.|..|++.++..-++
T Consensus 38 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 83 (112)
T 2ctq_A 38 LAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYD 83 (112)
T ss_dssp HHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 45667778888888663 678899999999997666544333
No 48
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=42.02 E-value=45 Score=19.79 Aligned_cols=45 Identities=11% Similarity=0.272 Sum_probs=32.5
Q ss_pred CCCcHHHHH-----------HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHH
Q psy15633 26 RPMNAFMVW-----------SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEK 70 (129)
Q Consensus 26 rP~naf~lf-----------~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK 70 (129)
...+.|-++ .+.+|..++.-||+.. ..+..+.|.+.|..|++.++
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 74 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHH
Confidence 345667665 4566777778889864 56788899999999976554
No 49
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=42.00 E-value=39 Score=21.46 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q psy15633 54 ISKRLGAEWKLLTENEKRPYIDEAKR 79 (129)
Q Consensus 54 isk~l~~~Wk~ls~~eK~~y~~~a~~ 79 (129)
..++-.+++..|++++|+.|.+..++
T Consensus 80 ~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 80 HMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34555689999999999999876543
No 50
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.91 E-value=44 Score=19.23 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEK 70 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK 70 (129)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++
T Consensus 25 k~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 64 (78)
T 2ctp_A 25 KKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64 (78)
T ss_dssp HHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 3556777778889875 45678889999999976654
No 51
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=41.22 E-value=38 Score=22.72 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q psy15633 54 ISKRLGAEWKLLTENEKRPYIDEAKRLRAMHM 85 (129)
Q Consensus 54 isk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~ 85 (129)
..+.-.+++..|++|+|+.|.+..++...++.
T Consensus 108 r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~~ 139 (145)
T 3itf_A 108 MAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLR 139 (145)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 34455689999999999999988777666554
No 52
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.92 E-value=51 Score=19.67 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhCCCCCH------HHHHHHHHHHhhcCCHHHH
Q psy15633 35 SRLQRRKIAQDNPKMHN------SEISKRLGAEWKLLTENEK 70 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~------~eisk~l~~~Wk~ls~~eK 70 (129)
.+.+|..++.-||+... .+..+.|.+.|..|++..+
T Consensus 27 k~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 68 (92)
T 2dmx_A 27 KKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68 (92)
T ss_dssp HHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHH
Confidence 45667777788898652 4677888999999876654
No 53
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.66 E-value=37 Score=20.19 Aligned_cols=36 Identities=6% Similarity=0.219 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENEK 70 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK 70 (129)
.+.+|..++.-||+.. ..+....|.+.|..|++.++
T Consensus 25 k~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~ 64 (88)
T 2ctr_A 25 KKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANR 64 (88)
T ss_dssp HHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHH
Confidence 4566777888899865 35677888999998865543
No 54
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=33.72 E-value=73 Score=19.48 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhCCCCC------HHHHHHHHHHHhhcCCHHHHHH
Q psy15633 35 SRLQRRKIAQDNPKMH------NSEISKRLGAEWKLLTENEKRP 72 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~------~~eisk~l~~~Wk~ls~~eK~~ 72 (129)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 20 k~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~ 63 (99)
T 2lgw_A 20 KKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63 (99)
T ss_dssp HHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3556677777888765 3467889999999997665443
No 55
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=32.65 E-value=39 Score=25.43 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.6
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHH
Q psy15633 60 AEWKLLTENEKRPYIDEAKRLRA 82 (129)
Q Consensus 60 ~~Wk~ls~~eK~~y~~~a~~~k~ 82 (129)
+.|+.|+.+||+.|.+.-...+.
T Consensus 9 ke~~~Ls~~Er~~yi~Av~~l~~ 31 (303)
T 3nm8_A 9 KNVLHLTDTEKRDFVRTVLILKE 31 (303)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHHH
T ss_pred cchHHCCHHHHHHHHHHHHHHHh
Confidence 35999999999999987666553
No 56
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.36 E-value=49 Score=19.80 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHhhcCCHHH
Q psy15633 36 RLQRRKIAQDNPKMH----NSEISKRLGAEWKLLTENE 69 (129)
Q Consensus 36 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~e 69 (129)
+.+|..++.-||+.. ..+..+.|.+.|..|++..
T Consensus 46 ~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~ 83 (90)
T 2ys8_A 46 KAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNI 83 (90)
T ss_dssp HHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcc
Confidence 455666677777754 4455666666666665544
No 57
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.30 E-value=1.1e+02 Score=19.46 Aligned_cols=50 Identities=8% Similarity=0.114 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q psy15633 34 WSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMHM 85 (129)
Q Consensus 34 f~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~ 85 (129)
|..+.+.-+ .-++++..++..++-++|..+..-|=+.|.-.....+..|+
T Consensus 29 iLaER~kpL--~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE 78 (106)
T 1j1d_B 29 ILAERRKVL--AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78 (106)
T ss_dssp HHHHHHHHH--HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence 344444433 44678889999999999998876655667655555444443
No 58
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.22 E-value=39 Score=19.66 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhCCCCCH------HHHHHHHHHHhhcCCHHHH
Q psy15633 35 SRLQRRKIAQDNPKMHN------SEISKRLGAEWKLLTENEK 70 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~------~eisk~l~~~Wk~ls~~eK 70 (129)
.+.+|..++.-||+... .+..+.|.+.|..|++..+
T Consensus 27 k~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 68 (82)
T 2ej7_A 27 KKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68 (82)
T ss_dssp HHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHH
Confidence 45566777778888653 3567788899988876554
No 59
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=25.79 E-value=1.1e+02 Score=18.12 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=24.3
Q ss_pred HHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHH
Q psy15633 52 SEISKRLGAEW-KLLTENEKRPYIDEAKRLRAM 83 (129)
Q Consensus 52 ~eisk~l~~~W-k~ls~~eK~~y~~~a~~~k~~ 83 (129)
.+....+...+ ..|++++++......+..+.+
T Consensus 76 ~~~~~~l~~~~~~~l~~e~~~~i~~~i~~l~~~ 108 (111)
T 1b0n_A 76 SEWEKLVRDAMTSGVSKKQFREFLDYQKWRKSQ 108 (111)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 45566777888 999999999888777665543
No 60
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=23.79 E-value=67 Score=21.09 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q psy15633 54 ISKRLGAEWKLLTENEKRPYIDEAKRLR 81 (129)
Q Consensus 54 isk~l~~~Wk~ls~~eK~~y~~~a~~~k 81 (129)
..+...+++..|++++|+.|.+..++..
T Consensus 96 ~~~~~~~~~~vLTPEQr~q~~~~~~kr~ 123 (138)
T 3oeo_A 96 HMETQNKIYNILTPEQKKQFNANFEKRL 123 (138)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3455678999999999999987655543
No 61
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}
Probab=23.56 E-value=2.4e+02 Score=21.51 Aligned_cols=44 Identities=7% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy15633 30 AFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMH 84 (129)
Q Consensus 30 af~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y 84 (129)
.-.+|...-++-++..||+++..+|.+. -++.|+..|+.-+++=
T Consensus 121 ~k~iYr~~S~~lv~~~hp~ws~~~v~~~-----------A~~~FE~aar~fM~eT 164 (331)
T 2atm_A 121 NMKIHKNFSIDLVRNEHPTWNKKXIELE-----------ASKRFEKYARFFMEET 164 (331)
T ss_dssp GGTHHHHHHHHHHHHHCTTSCHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3457888888999999999999988754 3566777776654443
No 62
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=22.80 E-value=91 Score=23.07 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=18.3
Q ss_pred HHhhcCCHHHHHHHHHHHHHHH
Q psy15633 60 AEWKLLTENEKRPYIDEAKRLR 81 (129)
Q Consensus 60 ~~Wk~ls~~eK~~y~~~a~~~k 81 (129)
+.|..||+++|+...+.+.+..
T Consensus 232 ~~w~~L~~e~q~~i~~aa~~~~ 253 (326)
T 3fxb_A 232 DFYDGLSAEDQQLVQNAALAAY 253 (326)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHH
Confidence 5799999999999998776653
No 63
>3awu_A Tyrosinase; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A 1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A 2zwd_A 2zwe_A* 2zwf_A* 2zwg_A* 3aws_A 3awt_A 1wxc_A 3awv_A 3aww_A 3awx_A 3awy_A ...
Probab=22.65 E-value=71 Score=23.57 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=16.4
Q ss_pred HhhcCCHHHHHHHHHHHHHHH
Q psy15633 61 EWKLLTENEKRPYIDEAKRLR 81 (129)
Q Consensus 61 ~Wk~ls~~eK~~y~~~a~~~k 81 (129)
.|+.|+.+||+.|.+.-...+
T Consensus 6 e~~~Ls~~er~~yi~Av~~l~ 26 (281)
T 3awu_A 6 NQATLTADEKRRFVAAVLELK 26 (281)
T ss_dssp BGGGCCHHHHHHHHHHHHHHH
T ss_pred chHHCCHHHHHHHHHHHHHHH
Confidence 488999999999987655554
No 64
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=22.29 E-value=2.6e+02 Score=21.50 Aligned_cols=43 Identities=9% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q psy15633 30 AFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAM 83 (129)
Q Consensus 30 af~lf~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~ 83 (129)
.-.+|...-++-++..||+++..+|.+. -++.|+..|+.-+++
T Consensus 125 ~k~iYr~~S~~Lv~~~hp~ws~~~v~~~-----------A~~~FE~aAr~FM~e 167 (350)
T 1fcq_A 125 SLQPYKKLSVEVVRREHPFWDDQRVEQE-----------AKRRFEKYGQLFMEE 167 (350)
T ss_dssp GGHHHHHHHHHHHHHHCTTSCHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCCHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 4567888889999999999999988753 456677777665443
No 65
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=22.01 E-value=95 Score=19.50 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHH--HHhhcCCHHHHHHHHHHHH
Q psy15633 47 PKMHNSEISKRLG--AEWKLLTENEKRPYIDEAK 78 (129)
Q Consensus 47 p~~~~~eisk~l~--~~Wk~ls~~eK~~y~~~a~ 78 (129)
=+.+.+-++.+|. +-|..|....|+.|..+..
T Consensus 45 LgrsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~n 78 (101)
T 1x2l_A 45 LGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQ 78 (101)
T ss_dssp TCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHH
T ss_pred HccccchHHHHhcCCCCHHHHhHhhhHHHHHHHH
Confidence 3567778888888 6899999999999998764
No 66
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=21.97 E-value=44 Score=20.51 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCCHHHH
Q psy15633 35 SRLQRRKIAQDNPKMHN-----SEISKRLGAEWKLLTENEK 70 (129)
Q Consensus 35 ~~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK 70 (129)
.+.+|..++.-||+... .+..+.|.+.|..|++.++
T Consensus 21 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~ 61 (103)
T 1bq0_A 21 RKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61 (103)
T ss_dssp HHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHH
Confidence 34566777778887653 5678889999999987654
No 67
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=21.14 E-value=12 Score=17.70 Aligned_cols=11 Identities=9% Similarity=0.679 Sum_probs=5.9
Q ss_pred CCCCCcHHHHH
Q psy15633 24 IKRPMNAFMVW 34 (129)
Q Consensus 24 pkrP~naf~lf 34 (129)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 34566665543
No 68
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=20.89 E-value=91 Score=23.18 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=17.9
Q ss_pred HHhhcCCHHHHHHHHHHHHHHH
Q psy15633 60 AEWKLLTENEKRPYIDEAKRLR 81 (129)
Q Consensus 60 ~~Wk~ls~~eK~~y~~~a~~~k 81 (129)
+.|..||+++|+...+.+.+..
T Consensus 235 ~~w~~L~~e~q~~i~~a~~e~~ 256 (328)
T 3u65_B 235 GSWARIPSRYHDAMLQAATRVR 256 (328)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHH
Confidence 5799999999999988766553
No 69
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=20.38 E-value=1.4e+02 Score=23.37 Aligned_cols=46 Identities=7% Similarity=0.002 Sum_probs=28.1
Q ss_pred HHhhCCCCCHHHHHHHHH------HHhhcCCHHHHHHHHHHHHHHHHHHHHh
Q psy15633 42 IAQDNPKMHNSEISKRLG------AEWKLLTENEKRPYIDEAKRLRAMHMKD 87 (129)
Q Consensus 42 ~~~~~p~~~~~eisk~l~------~~Wk~ls~~eK~~y~~~a~~~k~~y~~~ 87 (129)
+..+.|..+..+|...+. ..|+.++.++|..+.....+..+++..+
T Consensus 18 ~i~~v~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 69 (457)
T 3lns_A 18 DDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEA 69 (457)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHH
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHH
Confidence 344556667666655543 5699999999998887666555544443
No 70
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=20.11 E-value=1.3e+02 Score=22.07 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHHH
Q psy15633 59 GAEWKLLTENEKRPYIDEAKRL 80 (129)
Q Consensus 59 ~~~Wk~ls~~eK~~y~~~a~~~ 80 (129)
.+.|..|+++.|+...+.+.+.
T Consensus 220 ~~~~~~L~~~~q~~i~~a~~~a 241 (312)
T 2xwv_A 220 NETYKELPEDLQKVVKDAAENA 241 (312)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHH
Confidence 3579999999999888866543
Done!