RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15633
(129 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 105 bits (263), Expect = 1e-31
Identities = 69/80 (86%), Positives = 76/80 (95%)
Query: 22 DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLR 81
D +KRPMNAFMVWSR QRRK+AQ+NPKMHNSEISKRLGAEWKLL+E EKRP+IDEAKRLR
Sbjct: 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60
Query: 82 AMHMKDHPDYKYRPRRKPKT 101
A+HMK+HPDYKYRPRRK KT
Sbjct: 61 ALHMKEHPDYKYRPRRKTKT 80
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 101 bits (252), Expect = 7e-30
Identities = 54/85 (63%), Positives = 70/85 (82%)
Query: 20 IDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKR 79
+ D +KRPMNAF+VWSR QRRK+A +NP+M NSEISK+LG +WK+LTE EK P+ EA++
Sbjct: 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQK 60
Query: 80 LRAMHMKDHPDYKYRPRRKPKTLRK 104
L+AMH + +P+YKYRPRRK K L K
Sbjct: 61 LQAMHREKYPNYKYRPRRKAKMLPK 85
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 98.8 bits (246), Expect = 6e-29
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 23 HIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRA 82
HIK+P+NAFM++ + R + ++ ++ I++ LG W L+ E+ Y + A++ R
Sbjct: 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQ 61
Query: 83 MHMKDHPDYKYRPRRKPKTLRK 104
+HM+ +P + R K RK
Sbjct: 62 LHMQLYPGWSARDNYGKKKKRK 83
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 91.0 bits (226), Expect = 5e-26
Identities = 41/69 (59%), Positives = 51/69 (73%)
Query: 23 HIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRA 82
HIKRPMNAFMVW++ +RRKI Q P MHNS ISK LG+ WK +T EK+PY +E RL
Sbjct: 2 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSK 61
Query: 83 MHMKDHPDY 91
H++ +PDY
Sbjct: 62 QHLEKYPDY 70
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 83.0 bits (205), Expect = 7e-23
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 25 KRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRAMH 84
KRP +AF ++ R KI ++P + +++K+LG W ++K+PY +A +L+ +
Sbjct: 4 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 63
Query: 85 MKDHPDYKYRPRRK 98
KD Y+ + +
Sbjct: 64 EKDIAAYRAKGKPD 77
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 75.2 bits (185), Expect = 8e-20
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 22 DHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLR 81
D KRP++A+M+W R I ++NP + +E++KR G W+ +K + +A + +
Sbjct: 2 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAK 59
Query: 82 AMHMKDHPDYKY 93
+ + +++
Sbjct: 60 DDYDRAVKEFEA 71
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 72.2 bits (177), Expect = 2e-18
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEA 77
KK + KR ++A+M ++ R + +NP + ++ K+LG +WK LT EK+PY +A
Sbjct: 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKA 74
Query: 78 KRLRAMHMKDHPDYKYRP 95
+ + + + Y
Sbjct: 75 QADKKRYESEKELYNATL 92
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 71.5 bits (175), Expect = 4e-18
Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 23 HIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRA 82
K PMN + +S+ ++ + E +G+ W+ +++++K Y A+ +
Sbjct: 8 PKKPPMNGYQKFSQELLSNGELNHLPL--KERMVEIGSRWQRISQSQKEHYKKLAEEQQR 65
Query: 83 MHMKDHPDYKYRPRRKPKTLRKD 105
+ + + + K+
Sbjct: 66 QYKVHLDLWVKSLSPQDRAAYKE 88
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 70.8 bits (173), Expect = 7e-18
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEA 77
K + KRP++A ++S +RR++ ++ P++ SE+++ L W L+E +K Y
Sbjct: 15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKARE 74
Query: 78 KRLRAMHMKD 87
L+A +
Sbjct: 75 AALKAQSERK 84
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 70.4 bits (172), Expect = 9e-18
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 18 KKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTENEKRPYIDEA 77
KK D K+P+ + + +R K A+ +P+M N +++K L ++K L E +K YI +
Sbjct: 5 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDF 64
Query: 78 KRLRAMHMKD-------HPDYKYRPRR 97
+R + ++ HPD ++
Sbjct: 65 QREKQEFERNLARFREDHPDLIQNAKK 91
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 70.8 bits (173), Expect = 1e-17
Identities = 13/94 (13%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 7 GTYPNTLLSPEKKIDDHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLT 66
G+ ++ +K K P N++ ++ + + ++E +WKLL+
Sbjct: 1 GSSGSSGQLKDKFDGRPTKPPPNSYSLYCAELMANM----KDVPSTERMVLCSQQWKLLS 56
Query: 67 ENEKRPYIDEAKRLRAMHMKDHPDYKYRPRRKPK 100
+ EK Y + + + + + + + +
Sbjct: 57 QKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQ 90
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 68.7 bits (168), Expect = 2e-17
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 25 KRPMNAFMVWSRLQRRKIAQDNP--KMHNSEISKRLGAEWKLLTENEKRPYIDEAKRLRA 82
+ M+++ + + R + + +P ++ SE SK+ WK ++ EK + D AK +A
Sbjct: 3 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 62
Query: 83 MHMKDHPDY 91
+ ++ Y
Sbjct: 63 RYEREMKTY 71
>d1js8a1 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant octopus
(Octopus dofleini) [TaxId: 267067]}
Length = 289
Score = 25.2 bits (54), Expect = 2.8
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 49 MHNSEISKRLGAEWKLLTENEKRPYIDEA-------KRLRAMHMKDHPDYKYRPRRKPKT 101
+H+S R+ + W+ L + PY K L+ ++ +P+ + T
Sbjct: 198 LHHSNT-DRIWSVWQALQKYRGLPYNTANCEINKLVKPLKPFNLDTNPNAVTKAHSTGAT 256
Query: 102 L---RKDGYTYPAVSVPYQSVP 120
K GY Y ++ ++P
Sbjct: 257 SFDYHKLGYDYDNLNFHGMTIP 278
>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 196
Score = 24.1 bits (52), Expect = 6.0
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 74 IDEAKRLRAMHMKDHPDYKYRPRRKPKTLRK 104
+ A+ L+ + +K+ + P+ L K
Sbjct: 12 LQNARDLQDIRIKNKERHHLCPQPGSLYLTK 42
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 24.0 bits (52), Expect = 7.9
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 28 MNAFMVWSRLQRRKIAQDNPKMHNSEISKRLG-AEWKLL 65
MN + W L+ + NP + +I+ + E +L
Sbjct: 1 MNHYTRWLELK-----EQNPGKYARDIAGLMNIREAELA 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.406
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,392
Number of extensions: 23205
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 27
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.3 bits)