Query psy15634
Match_columns 113
No_of_seqs 153 out of 796
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 17:43:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0527|consensus 100.0 1.5E-30 3.4E-35 207.2 8.5 83 20-102 53-142 (331)
2 cd01389 MATA_HMG-box MATA_HMG- 99.9 1.1E-24 2.4E-29 140.2 8.2 70 29-98 1-77 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.9 2.2E-22 4.8E-27 128.1 7.6 65 29-93 1-72 (72)
4 KOG0528|consensus 99.9 9.3E-23 2E-27 167.6 5.6 80 24-103 320-406 (511)
5 PTZ00199 high mobility group p 99.7 2.2E-17 4.8E-22 110.5 7.7 69 21-89 14-91 (94)
6 PF00505 HMG_box: HMG (high mo 99.7 5E-17 1.1E-21 101.2 5.4 62 30-91 1-69 (69)
7 smart00398 HMG high mobility g 99.7 3.4E-16 7.3E-21 96.9 7.1 63 29-91 1-70 (70)
8 cd00084 HMG-box High Mobility 99.6 3.4E-15 7.4E-20 91.4 6.9 59 30-88 1-66 (66)
9 cd01390 HMGB-UBF_HMG-box HMGB- 99.6 2.7E-15 5.9E-20 92.5 6.3 54 30-86 1-54 (66)
10 COG5648 NHP6B Chromatin-associ 99.5 3.2E-15 7E-20 112.5 3.0 72 21-95 62-133 (211)
11 KOG3248|consensus 99.5 3E-14 6.6E-19 113.9 5.5 67 25-91 187-260 (421)
12 KOG0381|consensus 99.3 5.8E-12 1.3E-16 83.3 6.7 61 26-86 17-86 (96)
13 PF09011 HMG_box_2: HMG-box do 99.3 5.3E-12 1.1E-16 80.3 5.2 57 27-86 1-58 (73)
14 KOG2746|consensus 99.2 4.2E-12 9.1E-17 108.2 3.3 62 22-86 174-237 (683)
15 KOG0526|consensus 99.2 3E-11 6.6E-16 101.2 7.1 73 21-96 527-604 (615)
16 KOG4715|consensus 97.9 1.6E-05 3.6E-10 63.9 4.8 48 23-70 58-105 (410)
17 PF04769 MAT_Alpha1: Mating-ty 97.3 0.00077 1.7E-08 51.0 5.7 43 24-70 38-80 (201)
18 PF08073 CHDNT: CHDNT (NUC034) 96.8 0.0015 3.3E-08 40.0 3.1 36 35-70 14-49 (55)
19 PF04690 YABBY: YABBY protein; 96.0 0.014 3E-07 43.2 4.9 46 25-70 117-162 (170)
20 PF06382 DUF1074: Protein of u 83.1 2.6 5.7E-05 31.5 4.5 45 34-85 83-127 (183)
21 COG5648 NHP6B Chromatin-associ 81.5 1.5 3.2E-05 33.6 2.7 43 28-70 142-184 (211)
22 PF06244 DUF1014: Protein of u 77.2 3.6 7.8E-05 28.9 3.4 45 25-69 67-112 (122)
23 KOG3223|consensus 58.3 12 0.00026 28.6 3.0 45 26-70 160-205 (221)
24 PF13412 HTH_24: Winged helix- 57.5 12 0.00025 21.0 2.3 21 49-69 12-32 (48)
25 PF10668 Phage_terminase: Phag 49.1 20 0.00044 22.1 2.5 24 35-66 11-34 (60)
26 PF09164 VitD-bind_III: Vitami 46.0 55 0.0012 20.7 4.1 33 35-67 9-41 (68)
27 PF14887 HMG_box_5: HMG (high 44.2 91 0.002 20.5 5.9 59 32-91 6-71 (85)
28 PF06242 DUF1013: Protein of u 36.0 26 0.00056 25.2 1.7 18 49-66 78-95 (140)
29 cd08317 Death_ank Death domain 34.6 20 0.00042 22.8 0.8 18 53-70 3-20 (84)
30 PRK15117 ABC transporter perip 32.4 53 0.0011 24.6 3.0 27 52-81 65-92 (211)
31 PF06417 DUF1077: Protein of u 29.7 20 0.00044 25.2 0.3 11 32-42 27-37 (124)
32 TIGR03481 HpnM hopanoid biosyn 24.6 73 0.0016 23.6 2.5 25 53-80 62-87 (198)
33 PF13542 HTH_Tnp_ISL3: Helix-t 21.4 1.1E+02 0.0024 16.9 2.4 27 43-69 15-42 (52)
34 KOG0528|consensus 20.9 77 0.0017 27.3 2.2 68 24-96 11-86 (511)
35 PRK10597 DNA damage-inducible 20.6 2.5E+02 0.0055 18.2 4.4 38 31-68 12-71 (81)
36 PF13404 HTH_AsnC-type: AsnC-t 20.5 1.1E+02 0.0023 17.1 2.1 18 49-66 12-29 (42)
No 1
>KOG0527|consensus
Probab=99.97 E-value=1.5e-30 Score=207.23 Aligned_cols=83 Identities=37% Similarity=0.414 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCcc
Q psy15634 20 TSHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNL 92 (113)
Q Consensus 20 ~~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky 92 (113)
+...++...||||||||||+|++++|++|.++||+|+|+||||.||.+||. ||.++|+++|..|+++||||||
T Consensus 53 ~~~~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKY 132 (331)
T KOG0527|consen 53 GMKDKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKY 132 (331)
T ss_pred cccCCCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCccc
Confidence 444678899999999999999999999999999999999999999999985 8999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy15634 93 FDRDKGLDIT 102 (113)
Q Consensus 93 ~pr~k~~~~~ 102 (113)
+||||.+...
T Consensus 133 RPRRKkk~~~ 142 (331)
T KOG0527|consen 133 RPRRKKKKRP 142 (331)
T ss_pred cccccccccc
Confidence 9999987643
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.92 E-value=1.1e-24 Score=140.21 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=67.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCCCC
Q psy15634 29 HIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRDKG 98 (113)
Q Consensus 29 ~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~k~ 98 (113)
|||||+||||||+++.|..|+.+||+++++|||++||++|+. +|...|++.+..|..++|+|+|.|++++
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p~~~~ 77 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTPRKSS 77 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCC
Confidence 699999999999999999999999999999999999999986 7999999999999999999999999874
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.88 E-value=2.2e-22 Score=128.10 Aligned_cols=65 Identities=32% Similarity=0.445 Sum_probs=62.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccC
Q psy15634 29 HIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLF 93 (113)
Q Consensus 29 ~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~ 93 (113)
|||||+||||+|++++|..|+.+||++++.|||++||++|+. +|.+.+++.+..|.+++|||+|+
T Consensus 1 ~iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~y~ 72 (72)
T cd01388 1 HIKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKWR 72 (72)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 699999999999999999999999999999999999999986 79999999999999999999996
No 4
>KOG0528|consensus
Probab=99.87 E-value=9.3e-23 Score=167.61 Aligned_cols=80 Identities=36% Similarity=0.462 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCC
Q psy15634 24 NLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRD 96 (113)
Q Consensus 24 ~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~ 96 (113)
...+.||||||||||+|+++.|++|...+|+|+|..||||||.+||. ||+++-+++-..|.+.||||+|.||-
T Consensus 320 ~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPRP 399 (511)
T KOG0528|consen 320 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPRP 399 (511)
T ss_pred CCCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCCC
Confidence 46778999999999999999999999999999999999999999984 89999999999999999999999999
Q ss_pred CCCCCCC
Q psy15634 97 KGLDITN 103 (113)
Q Consensus 97 k~~~~~~ 103 (113)
|+.|+.+
T Consensus 400 KRTCvvd 406 (511)
T KOG0528|consen 400 KRTCVVD 406 (511)
T ss_pred Cceeeec
Confidence 9998765
No 5
>PTZ00199 high mobility group protein; Provisional
Probab=99.72 E-value=2.2e-17 Score=110.49 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCC--hHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcC
Q psy15634 21 SHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMH--NSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRK 89 (113)
Q Consensus 21 ~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~--~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~ 89 (113)
.+..+|++.||||+||||||++++|..|..+||+++ +++||++||++|+. +|...|++.+..|..+...
T Consensus 14 ~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~ 91 (94)
T PTZ00199 14 KRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAE 91 (94)
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999986 79999999999987 4444444444444444333
No 6
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.68 E-value=5e-17 Score=101.24 Aligned_cols=62 Identities=26% Similarity=0.354 Sum_probs=55.3
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 30 IKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 30 ~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
||||+||||||+++.+..|..+||++++.+|+++||++|++ +|...+++.+..|.+++++|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999986 688888888888888888774
No 7
>smart00398 HMG high mobility group.
Probab=99.66 E-value=3.4e-16 Score=96.95 Aligned_cols=63 Identities=29% Similarity=0.366 Sum_probs=58.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 29 HIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 29 ~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
.||||+||||+|+++.|..+..++|++++++|+++||.+|+. +|...+++.+..|..++++|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999999999999999999999986 688888888888999888875
No 8
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.60 E-value=3.4e-15 Score=91.43 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhc
Q psy15634 30 IKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACR 88 (113)
Q Consensus 30 ~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p 88 (113)
||||+||||+|+++.|..+..++|+++..+|+++||.+|+. +|...+++.+..|..++|
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~~ 66 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEMP 66 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999999999986 566777777777766653
No 9
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.60 E-value=2.7e-15 Score=92.45 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=47.0
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCChhHhhHHHHHHHHHHH
Q psy15634 30 IKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLCPQKIELKSKRDIHVEA 86 (113)
Q Consensus 30 ~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~~y~~~a~~~k~~h~~a 86 (113)
||||+||||+|+++.|..+..++|++++.+|+++||++|+. +.++++..|...+
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~---ls~~eK~~y~~~a 54 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKE---LSEEEKKKYEEKA 54 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986 5555555555444
No 10
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.54 E-value=3.2e-15 Score=112.53 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCChhHhhHHHHHHHHHHHhcCCccCCC
Q psy15634 21 SHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLCPQKIELKSKRDIHVEACRKSNLFDR 95 (113)
Q Consensus 21 ~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~~y~~~a~~~k~~h~~a~p~yky~pr 95 (113)
.+..+|++.||||++|||+|+.+.|.+|..++|++.+++|+++||++|++ ++++++++|..+++-++..+-+
T Consensus 62 ~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~---Ltd~eke~y~k~~~~~~erYq~ 133 (211)
T COG5648 62 VRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKE---LTDEEKEPYYKEANSDRERYQR 133 (211)
T ss_pred HHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh---ccHhhhhhHHHHHhhHHHHHHH
Confidence 34568999999999999999999999999999999999999999999988 8899999999999888875554
No 11
>KOG3248|consensus
Probab=99.49 E-value=3e-14 Score=113.90 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=62.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 25 LGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 25 k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
....|||.||||||||++++|.+|.+++.....++|.+|||++|.+ .|++.|...+..|++.||+|.
T Consensus 187 ~KkphiKKPLNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WS 260 (421)
T KOG3248|consen 187 AKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS 260 (421)
T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3677899999999999999999999999988899999999999975 688999999999999999885
No 12
>KOG0381|consensus
Probab=99.32 E-value=5.8e-12 Score=83.25 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=49.8
Q ss_pred CC--CCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHH
Q psy15634 26 GE--QHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEA 86 (113)
Q Consensus 26 ~~--~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a 86 (113)
++ +.++||++||++|+.+.|..++.+||+++..||++.||++|++ +|...+...+..+...
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~ 86 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKE 86 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55 5899999999999999999999999999999999999999986 3444444444444433
No 13
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.29 E-value=5.3e-12 Score=80.29 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=42.8
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhh-CCCCChHHHHHHhhhhcCChhHhhHHHHHHHHHHH
Q psy15634 27 EQHIKRPMNAFMVWSRIQRRKIALD-NPKMHNSIIFNCHIMHFLCPQKIELKSKRDIHVEA 86 (113)
Q Consensus 27 ~~~~KRPlNAFmlf~~~~R~~v~~~-~P~~~~~eISk~LG~~Wk~~y~~~a~~~k~~h~~a 86 (113)
|++||||+|||+||+.+++..+..+ .+.....|+++.||..|++ ++.+++..|..+|
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~---Ls~~EK~~Y~~~A 58 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKS---LSEEEKEPYEERA 58 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHH---S-HHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHH
Confidence 5789999999999999999999998 7888899999999999986 4444444444433
No 14
>KOG2746|consensus
Probab=99.24 E-value=4.2e-12 Score=108.23 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHH--HHHHhhCCCCChHHHHHHhhhhcCChhHhhHHHHHHHHHHH
Q psy15634 22 HLNLGEQHIKRPMNAFMVWSRIQR--RKIALDNPKMHNSIIFNCHIMHFLCPQKIELKSKRDIHVEA 86 (113)
Q Consensus 22 ~~~k~~~~~KRPlNAFmlf~~~~R--~~v~~~~P~~~~~eISk~LG~~Wk~~y~~~a~~~k~~h~~a 86 (113)
..+.+..||.|||||||+|++.+| ..+.+.+|+.+|..||+|||++| |.+.+.|+..||+.+
T Consensus 174 pnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewW---ytL~~~Ekq~yhdLa 237 (683)
T KOG2746|consen 174 PNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWW---YTLGPNEKQKYHDLA 237 (683)
T ss_pred CCcCcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhH---hhhCchhhhhHHHHH
Confidence 345789999999999999999999 99999999999999999999999 445555555555433
No 15
>KOG0526|consensus
Probab=99.21 E-value=3e-11 Score=101.24 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-----hhHhhHHHHHHHHHHHhcCCccCCC
Q psy15634 21 SHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-----PQKIELKSKRDIHVEACRKSNLFDR 95 (113)
Q Consensus 21 ~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-----~y~~~a~~~k~~h~~a~p~yky~pr 95 (113)
++++|||++|||+++|||||.+..|..|+.+ +.+.+||+|.+|++|++ +|...|+.-+..+..+..+|+ .++
T Consensus 527 ~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~k~~we~ka~~dk~ry~~em~~yk-~g~ 603 (615)
T KOG0526|consen 527 GKKKKDPNAPKRATSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSAKEEWEDKAAVDKQRYEDEMKEYK-NGQ 603 (615)
T ss_pred cccCCCCCCCccchhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcccchhhHHHHHHHHHHHHHHHhhc-CCC
Confidence 4567899999999999999999999999998 99999999999999985 799999998888888888998 444
Q ss_pred C
Q psy15634 96 D 96 (113)
Q Consensus 96 ~ 96 (113)
.
T Consensus 604 ~ 604 (615)
T KOG0526|consen 604 M 604 (615)
T ss_pred c
Confidence 3
No 16
>KOG4715|consensus
Probab=97.91 E-value=1.6e-05 Score=63.85 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC
Q psy15634 23 LNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC 70 (113)
Q Consensus 23 ~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~ 70 (113)
..+.+..|-+||-.||-|++..-..|++.||++.--||+|++|.+|+.
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~d 105 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLD 105 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhh
Confidence 345677788999999999999999999999999999999999999975
No 17
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=97.25 E-value=0.00077 Score=50.98 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC
Q psy15634 24 NLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC 70 (113)
Q Consensus 24 ~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~ 70 (113)
+....+.+||+|+||+|+.-.- ...|+....++|.+|+..|..
T Consensus 38 ~~~~~~~kr~lN~Fm~FRsyy~----~~~~~~~Qk~~S~~l~~lW~~ 80 (201)
T PF04769_consen 38 KRSPEKAKRPLNGFMAFRSYYS----PIFPPLPQKELSGILTKLWEK 80 (201)
T ss_pred cccccccccchhHHHHHHHHHH----hhcCCcCHHHHHHHHHHHHhC
Confidence 4566678999999999976554 667888899999999999974
No 18
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.80 E-value=0.0015 Score=39.96 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC
Q psy15634 35 NAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC 70 (113)
Q Consensus 35 NAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~ 70 (113)
..|=+|.+..|+.|.+.||+...+.|-.+++.+||+
T Consensus 14 t~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrE 49 (55)
T PF08073_consen 14 TNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWRE 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999986
No 19
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=96.03 E-value=0.014 Score=43.21 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=41.1
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC
Q psy15634 25 LGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC 70 (113)
Q Consensus 25 k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~ 70 (113)
+.+.+-.|-++||=.|.++.=.+|++.||+++..|+-+...+.|..
T Consensus 117 kPPEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h 162 (170)
T PF04690_consen 117 KPPEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAH 162 (170)
T ss_pred CCccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 4455556779999999999999999999999999999999999965
No 20
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=83.11 E-value=2.6 Score=31.54 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCChhHhhHHHHHHHHHH
Q psy15634 34 MNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLCPQKIELKSKRDIHVE 85 (113)
Q Consensus 34 lNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~~y~~~a~~~k~~h~~ 85 (113)
-||||-|.++.|. .|.+|+..|+-...+..|.. +...++..|-.+
T Consensus 83 nnaYLNFLReFRr----kh~~L~p~dlI~~AAraW~r---LSe~eK~rYrr~ 127 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCGLSPQDLIQRAARAWCR---LSEAEKNRYRRM 127 (183)
T ss_pred chHHHHHHHHHHH----HccCCCHHHHHHHHHHHHHh---CCHHHHHHHHhh
Confidence 5899999987776 57899999999999999964 666666555443
No 21
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=81.54 E-value=1.5 Score=33.59 Aligned_cols=43 Identities=14% Similarity=-0.002 Sum_probs=38.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC
Q psy15634 28 QHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC 70 (113)
Q Consensus 28 ~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~ 70 (113)
-..++|.-.|+-+....|..+...+|+-.-.++.+++|..|.+
T Consensus 142 ~~~~~~~~~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~e 184 (211)
T COG5648 142 LPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSE 184 (211)
T ss_pred cCCCCCCchhhhccHHhccccCCCCcchhhhHHhhhhhhhhhh
Confidence 3457888999999999999999999999999999999999976
No 22
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=77.21 E-value=3.6 Score=28.90 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=38.4
Q ss_pred CCCCCC-CCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcC
Q psy15634 25 LGEQHI-KRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFL 69 (113)
Q Consensus 25 k~~~~~-KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk 69 (113)
....|| +|=--||--|.-.+=+.|+++||++.-+.+-.+|-..|.
T Consensus 67 ~~drHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~ 112 (122)
T PF06244_consen 67 PIDRHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQ 112 (122)
T ss_pred CCCCCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHh
Confidence 344555 444579999999999999999999999999999999995
No 23
>KOG3223|consensus
Probab=58.31 E-value=12 Score=28.56 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=39.1
Q ss_pred CCCCC-CCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC
Q psy15634 26 GEQHI-KRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC 70 (113)
Q Consensus 26 ~~~~~-KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~ 70 (113)
+..|| +|=.-||--|-...-+.|+.+||++..++.-.+|-.+|..
T Consensus 160 ddrHPEkRmrAA~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~K 205 (221)
T KOG3223|consen 160 DDRHPEKRMRAAFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQK 205 (221)
T ss_pred cccChHHHHHHHHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhh
Confidence 33454 6667899999999999999999999999999999999963
No 24
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=57.54 E-value=12 Score=20.99 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=16.1
Q ss_pred HhhCCCCChHHHHHHhhhhcC
Q psy15634 49 ALDNPKMHNSIIFNCHIMHFL 69 (113)
Q Consensus 49 ~~~~P~~~~~eISk~LG~~Wk 69 (113)
..++|.++..|||+.+|--+.
T Consensus 12 l~~~~~~t~~ela~~~~is~~ 32 (48)
T PF13412_consen 12 LRENPRITQKELAEKLGISRS 32 (48)
T ss_dssp HHHCTTS-HHHHHHHHTS-HH
T ss_pred HHHcCCCCHHHHHHHhCCCHH
Confidence 456999999999999997663
No 25
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=49.14 E-value=20 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHhhCCCCChHHHHHHhhh
Q psy15634 35 NAFMVWSRIQRRKIALDNPKMHNSIIFNCHIM 66 (113)
Q Consensus 35 NAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~ 66 (113)
.||.|| .+.+-.+.+.||+..||-
T Consensus 11 kA~e~y--------~~~~g~i~lkdIA~~Lgv 34 (60)
T PF10668_consen 11 KAFEIY--------KESNGKIKLKDIAEKLGV 34 (60)
T ss_pred HHHHHH--------HHhCCCccHHHHHHHHCC
Confidence 588888 356678899999999984
No 26
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=45.97 E-value=55 Score=20.72 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHhhCCCCChHHHHHHhhhh
Q psy15634 35 NAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMH 67 (113)
Q Consensus 35 NAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~ 67 (113)
|-|.-|-+.-+..++...|+++..+|..++.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~at~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDATPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 678999999999999999999999999888765
No 27
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=44.22 E-value=91 Score=20.49 Aligned_cols=59 Identities=7% Similarity=0.002 Sum_probs=42.3
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 32 RPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 32 RPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
-|-+|==||-+.......+.++.-...+ -+.++..|++ +|...|.+.+..++....+|.
T Consensus 6 ~PKt~qe~Wqq~vi~dYla~~~~dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r 71 (85)
T PF14887_consen 6 TPKTAQEIWQQSVIGDYLAKFRNDRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMR 71 (85)
T ss_dssp ---THHHHHHHHHHHHHHHHTTSTHHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHhhHhHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3557777999999998888888876666 4499999976 577677776666666655554
No 28
>PF06242 DUF1013: Protein of unknown function (DUF1013); InterPro: IPR010421 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=35.96 E-value=26 Score=25.23 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=16.2
Q ss_pred HhhCCCCChHHHHHHhhh
Q psy15634 49 ALDNPKMHNSIIFNCHIM 66 (113)
Q Consensus 49 ~~~~P~~~~~eISk~LG~ 66 (113)
...||.++.+.|++++|.
T Consensus 78 vk~hPel~DaQI~kLiGT 95 (140)
T PF06242_consen 78 VKNHPELSDAQIAKLIGT 95 (140)
T ss_pred HhcCCcccHHHHHHHhcC
Confidence 467999999999999995
No 29
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=34.59 E-value=20 Score=22.84 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=15.7
Q ss_pred CCCChHHHHHHhhhhcCC
Q psy15634 53 PKMHNSIIFNCHIMHFLC 70 (113)
Q Consensus 53 P~~~~~eISk~LG~~Wk~ 70 (113)
|++....|++.||.-|+.
T Consensus 3 ~~~~l~~ia~~lG~dW~~ 20 (84)
T cd08317 3 ADIRLADISNLLGSDWPQ 20 (84)
T ss_pred ccchHHHHHHHHhhHHHH
Confidence 567889999999999975
No 30
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=32.40 E-value=53 Score=24.65 Aligned_cols=27 Identities=4% Similarity=-0.181 Sum_probs=19.8
Q ss_pred CCCCChHHHHH-HhhhhcCChhHhhHHHHHH
Q psy15634 52 NPKMHNSIIFN-CHIMHFLCPQKIELKSKRD 81 (113)
Q Consensus 52 ~P~~~~~eISk-~LG~~Wk~~y~~~a~~~k~ 81 (113)
.|..+...||+ .||.-|+. .+++++..
T Consensus 65 ~p~~Df~~~s~~vLG~~wr~---as~eQr~~ 92 (211)
T PRK15117 65 LPYVQVKYAGALVLGRYYKD---ATPAQREA 92 (211)
T ss_pred cccCCHHHHHHHHhhhhhhh---CCHHHHHH
Confidence 47788999977 89999986 55555433
No 31
>PF06417 DUF1077: Protein of unknown function (DUF1077); InterPro: IPR009445 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=29.71 E-value=20 Score=25.18 Aligned_cols=11 Identities=45% Similarity=0.833 Sum_probs=9.1
Q ss_pred CCCchHHHHHH
Q psy15634 32 RPMNAFMVWSR 42 (113)
Q Consensus 32 RPlNAFmlf~~ 42 (113)
=|||+||.|..
T Consensus 27 ipMn~FMmyMs 37 (124)
T PF06417_consen 27 IPMNLFMMYMS 37 (124)
T ss_pred hhHHHHHHHHh
Confidence 48999999963
No 32
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=24.61 E-value=73 Score=23.63 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=18.3
Q ss_pred CCCChHHHHH-HhhhhcCChhHhhHHHHH
Q psy15634 53 PKMHNSIIFN-CHIMHFLCPQKIELKSKR 80 (113)
Q Consensus 53 P~~~~~eISk-~LG~~Wk~~y~~~a~~~k 80 (113)
|..+...|++ .||..|+. ..++++.
T Consensus 62 ~~~Df~~mar~vLG~~W~~---~s~~Qr~ 87 (198)
T TIGR03481 62 EAFDLPAMARLTLGSSWTS---LSPEQRR 87 (198)
T ss_pred HhCCHHHHHHHHhhhhhhh---CCHHHHH
Confidence 4678999987 79999986 5555443
No 33
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=21.38 E-value=1.1e+02 Score=16.91 Aligned_cols=27 Identities=4% Similarity=-0.293 Sum_probs=19.4
Q ss_pred HHHHHHHhhCCCC-ChHHHHHHhhhhcC
Q psy15634 43 IQRRKIALDNPKM-HNSIIFNCHIMHFL 69 (113)
Q Consensus 43 ~~R~~v~~~~P~~-~~~eISk~LG~~Wk 69 (113)
.....|....-+. +..+|++.+|--|.
T Consensus 15 ~~~~~i~~~~~~~~s~~~vA~~~~vs~~ 42 (52)
T PF13542_consen 15 RLEQYILKLLRESRSFKDVARELGVSWS 42 (52)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHCCCHH
Confidence 3344555555555 89999999999994
No 34
>KOG0528|consensus
Probab=20.92 E-value=77 Score=27.34 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCCCCCCCCC-CchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCC
Q psy15634 24 NLGEQHIKRP-MNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDR 95 (113)
Q Consensus 24 ~k~~~~~KRP-lNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr 95 (113)
....+..++| +|+|+++. .....+.|.+-+..|+ +.|..|.. .+..........|..+.+.+.+.+.
T Consensus 11 ~~~~~s~~~~e~~~~qe~~----~~~~~e~~~s~~q~i~-~~~ql~~~~s~q~~~a~~~~s~~~~q~h~~~q~~~~i~~~ 85 (511)
T KOG0528|consen 11 KLQKNSVKLPEVNGTQESL----AEKELELPTSIHQLIS-LRGQLLANHSEQKKLAASDSSAQEQQMHLAEQQQEQIAPQ 85 (511)
T ss_pred cccccchhcccccccHHhh----hhhhhccCCCcceeee-cchhhcccccccchhhhhhhhHHHHHHHHHHhHHHhhhHH
Confidence 3455667888 99999885 3445567777777888 88888875 3445555666778888888887765
Q ss_pred C
Q psy15634 96 D 96 (113)
Q Consensus 96 ~ 96 (113)
.
T Consensus 86 ~ 86 (511)
T KOG0528|consen 86 Q 86 (511)
T ss_pred H
Confidence 3
No 35
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=20.63 E-value=2.5e+02 Score=18.19 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=30.9
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCCCC--------------h--------HHHHHHhhhhc
Q psy15634 31 KRPMNAFMVWSRIQRRKIALDNPKMH--------------N--------SIIFNCHIMHF 68 (113)
Q Consensus 31 KRPlNAFmlf~~~~R~~v~~~~P~~~--------------~--------~eISk~LG~~W 68 (113)
+=|.+|+-....+.-++|...+|+.. . ..|+.+|-++|
T Consensus 12 ~lp~ga~~AL~~EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLqE~w 71 (81)
T PRK10597 12 PLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQETW 71 (81)
T ss_pred CCChhHHHHHHHHHHHHHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHHHHH
Confidence 45679999999999999999999863 1 34778888888
No 36
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=20.46 E-value=1.1e+02 Score=17.06 Aligned_cols=18 Identities=0% Similarity=-0.125 Sum_probs=12.9
Q ss_pred HhhCCCCChHHHHHHhhh
Q psy15634 49 ALDNPKMHNSIIFNCHIM 66 (113)
Q Consensus 49 ~~~~P~~~~~eISk~LG~ 66 (113)
...++..+..+|+..+|-
T Consensus 12 Lq~d~r~s~~~la~~lgl 29 (42)
T PF13404_consen 12 LQEDGRRSYAELAEELGL 29 (42)
T ss_dssp HHH-TTS-HHHHHHHHTS
T ss_pred HHHcCCccHHHHHHHHCc
Confidence 456788999999999883
Done!