Query psy15634
Match_columns 113
No_of_seqs 153 out of 796
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 17:43:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u2b_C Transcription factor SO 99.9 6.8E-26 2.3E-30 144.8 7.7 72 28-99 1-79 (79)
2 1i11_A Transcription factor SO 99.9 8.8E-26 3E-30 145.4 7.1 72 27-98 2-80 (81)
3 1j46_A SRY, sex-determining re 99.9 4.5E-25 1.5E-29 143.5 9.8 76 26-101 1-83 (85)
4 3f27_D Transcription factor SO 99.9 2.3E-25 7.9E-30 143.7 7.5 74 26-99 3-83 (83)
5 1hry_A Human SRY; DNA, DNA-bin 99.9 9.5E-25 3.2E-29 138.7 7.6 69 26-94 1-76 (76)
6 1gt0_D Transcription factor SO 99.9 2.2E-24 7.5E-29 138.4 9.0 72 28-99 1-79 (80)
7 2e6o_A HMG box-containing prot 99.9 1.7E-24 5.9E-29 141.4 8.4 72 21-92 9-87 (87)
8 4euw_A Transcription factor SO 99.9 1.7E-24 5.9E-29 146.4 8.4 76 23-98 23-105 (106)
9 2lef_A LEF-1 HMG, protein (lym 99.9 1.9E-23 6.3E-28 135.9 9.6 71 28-98 1-78 (86)
10 1wz6_A HMG-box transcription f 99.9 1.3E-23 4.6E-28 135.4 6.4 72 25-96 3-81 (82)
11 1k99_A Upstream binding factor 99.9 4.6E-23 1.6E-27 137.9 6.5 76 22-97 3-92 (99)
12 4a3n_A Transcription factor SO 99.9 5.1E-22 1.8E-26 124.1 5.4 64 28-91 1-71 (71)
13 1hme_A High mobility group pro 99.9 1.6E-21 5.5E-26 124.0 7.6 69 24-92 1-76 (77)
14 2crj_A SWI/SNF-related matrix- 99.9 8.8E-22 3E-26 129.7 6.4 72 24-95 2-80 (92)
15 2co9_A Thymus high mobility gr 99.8 1.4E-21 4.8E-26 131.1 7.0 78 21-98 9-93 (102)
16 1wgf_A Upstream binding factor 99.8 7.3E-21 2.5E-25 124.9 8.1 76 17-95 8-83 (90)
17 1wxl_A Single-strand recogniti 99.8 1.5E-20 5.3E-25 118.7 6.9 65 27-91 1-70 (73)
18 2eqz_A High mobility group pro 99.8 2.3E-20 7.8E-25 121.4 7.8 72 20-91 6-86 (86)
19 1cg7_A Protein (NON histone pr 99.8 2E-21 6.8E-26 128.3 1.5 77 15-91 6-89 (93)
20 2d7l_A WD repeat and HMG-box D 99.8 7.1E-20 2.4E-24 118.8 8.7 62 26-90 2-64 (81)
21 3nm9_A HMG-D, high mobility gr 99.8 1.9E-20 6.4E-25 118.3 5.7 64 28-91 2-70 (73)
22 2cs1_A PMS1 protein homolog 1; 99.8 3.7E-20 1.3E-24 121.9 6.7 72 25-96 3-81 (92)
23 1aab_A High mobility group pro 99.8 4.2E-20 1.4E-24 119.2 6.4 69 24-92 2-79 (83)
24 2lhj_A High mobility group pro 99.8 1.4E-20 4.9E-25 124.9 3.8 72 21-92 14-94 (97)
25 1ckt_A High mobility group 1 p 99.8 8.4E-19 2.9E-23 109.6 7.6 62 29-90 1-71 (71)
26 2gzk_A Sex-determining region 99.8 9.5E-19 3.2E-23 124.4 8.3 73 27-99 2-81 (159)
27 2yrq_A High mobility group pro 99.7 1.8E-18 6.3E-23 124.7 7.3 72 21-92 93-171 (173)
28 2gzk_A Sex-determining region 99.7 7.5E-18 2.6E-22 119.7 6.9 71 21-91 80-157 (159)
29 2yrq_A High mobility group pro 99.7 3.4E-17 1.2E-21 118.0 8.9 72 22-93 8-88 (173)
30 1v64_A Nucleolar transcription 99.7 5.1E-17 1.8E-21 110.1 5.2 68 21-92 8-83 (108)
31 2cto_A Novel protein; high mob 99.7 5.1E-17 1.7E-21 108.0 4.9 61 24-89 5-68 (93)
32 3fgh_A Transcription factor A, 99.6 1.9E-16 6.6E-21 98.1 4.6 59 28-90 1-66 (67)
33 1v63_A Nucleolar transcription 99.6 6.3E-16 2.1E-20 103.6 6.0 65 25-91 4-75 (101)
34 2yuk_A Myeloid/lymphoid or mix 99.6 1.8E-17 6.3E-22 109.7 -2.1 59 23-88 16-76 (90)
35 3tmm_A Transcription factor A, 99.6 3.1E-16 1.1E-20 118.8 3.6 68 24-91 36-110 (238)
36 1l8y_A Upstream binding factor 99.6 2.5E-15 8.7E-20 99.6 7.3 64 28-92 3-73 (91)
37 3tq6_A Transcription factor A, 99.6 1.1E-15 3.7E-20 114.2 4.5 67 25-91 5-78 (214)
38 3tq6_A Transcription factor A, 99.4 1.1E-14 3.8E-19 108.6 -0.1 65 25-93 110-181 (214)
39 3tmm_A Transcription factor A, 99.4 2E-14 6.8E-19 108.8 -0.2 65 25-93 142-213 (238)
40 2p7v_B Sigma-70, RNA polymeras 27.2 63 0.0022 18.1 3.1 25 44-68 10-39 (68)
41 1qbj_A Protein (double-strande 25.2 47 0.0016 20.2 2.4 32 36-67 3-40 (81)
No 1
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.93 E-value=6.8e-26 Score=144.84 Aligned_cols=72 Identities=40% Similarity=0.495 Sum_probs=66.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCCCCC
Q psy15634 28 QHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRDKGL 99 (113)
Q Consensus 28 ~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~k~~ 99 (113)
++||||+||||||++++|..|..++|+++++|||++||++|++ +|...|++.+..|.+++|+|+|+|+++++
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk~~k 79 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKVK 79 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCC
Confidence 5899999999999999999999999999999999999999985 79999999999999999999999998864
No 2
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=8.8e-26 Score=145.38 Aligned_cols=72 Identities=39% Similarity=0.484 Sum_probs=61.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCCCC
Q psy15634 27 EQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRDKG 98 (113)
Q Consensus 27 ~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~k~ 98 (113)
.++||||+||||||++++|..|..+||+++++|||++||++|++ +|...|++.+..|.++||+|+|.|++++
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~~~ 80 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 80 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--------
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCCCC
Confidence 57899999999999999999999999999999999999999986 7999999999999999999999999876
No 3
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.92 E-value=4.5e-25 Score=143.48 Aligned_cols=76 Identities=38% Similarity=0.509 Sum_probs=72.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCCCC
Q psy15634 26 GEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRDKG 98 (113)
Q Consensus 26 ~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~k~ 98 (113)
.+++||||+||||||++++|..|..+||+++++|||++||++|++ +|...|++.+..|..++|+|+|.|++++
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr~~ 80 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKA 80 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCcc
Confidence 378999999999999999999999999999999999999999986 7999999999999999999999999988
Q ss_pred CCC
Q psy15634 99 LDI 101 (113)
Q Consensus 99 ~~~ 101 (113)
+..
T Consensus 81 ~~~ 83 (85)
T 1j46_A 81 KML 83 (85)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 4
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.92 E-value=2.3e-25 Score=143.70 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=65.3
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCCCC
Q psy15634 26 GEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRDKG 98 (113)
Q Consensus 26 ~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~k~ 98 (113)
.+++||||+||||||++++|..|..+||+++++|||++||++|++ +|...|++.+..|.+++|+|+|+|++++
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~kk 82 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 82 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC--
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCccCC
Confidence 577899999999999999999999999999999999999999985 7999999999999999999999999886
Q ss_pred C
Q psy15634 99 L 99 (113)
Q Consensus 99 ~ 99 (113)
+
T Consensus 83 ~ 83 (83)
T 3f27_D 83 Q 83 (83)
T ss_dssp -
T ss_pred C
Confidence 4
No 5
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.91 E-value=9.5e-25 Score=138.73 Aligned_cols=69 Identities=39% Similarity=0.533 Sum_probs=64.3
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCC
Q psy15634 26 GEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFD 94 (113)
Q Consensus 26 ~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~p 94 (113)
|+++||||+||||||++++|..|+.+||+++++|||++||++|++ +|...|++.+..|.+++|+|+|+|
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 688999999999999999999999999999999999999999986 799999999999999999999987
No 6
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.91 E-value=2.2e-24 Score=138.39 Aligned_cols=72 Identities=44% Similarity=0.559 Sum_probs=69.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCCCCC
Q psy15634 28 QHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRDKGL 99 (113)
Q Consensus 28 ~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~k~~ 99 (113)
++||||+||||||++++|..|..+||+++++|||++||++|++ +|...|++.+..|.+++|+|+|.|+++++
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~~k 79 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK 79 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCCCC
Confidence 4799999999999999999999999999999999999999986 79999999999999999999999999876
No 7
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=1.7e-24 Score=141.39 Aligned_cols=72 Identities=19% Similarity=0.123 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCcc
Q psy15634 21 SHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNL 92 (113)
Q Consensus 21 ~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky 92 (113)
.+..+|+++||||+||||||++++|..|+.+||++++.|||++||++|++ +|...|++.+..|.++||+|+|
T Consensus 9 ~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yky 87 (87)
T 2e6o_A 9 TVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK 87 (87)
T ss_dssp SCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 34568999999999999999999999999999999999999999999985 8999999999999999999998
No 8
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.91 E-value=1.7e-24 Score=146.43 Aligned_cols=76 Identities=30% Similarity=0.412 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCC
Q psy15634 23 LNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDR 95 (113)
Q Consensus 23 ~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr 95 (113)
..+++++||||+||||||++++|..|+.++|+++++|||++||++|+. +|...|++.+..|.+++|+|+|+|+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~Pr 102 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPR 102 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC---
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCCC
Confidence 358999999999999999999999999999999999999999999986 7999999999999999999999999
Q ss_pred CCC
Q psy15634 96 DKG 98 (113)
Q Consensus 96 ~k~ 98 (113)
+++
T Consensus 103 rkK 105 (106)
T 4euw_A 103 RRK 105 (106)
T ss_dssp ---
T ss_pred CCC
Confidence 875
No 9
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.90 E-value=1.9e-23 Score=135.95 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=67.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCCCC
Q psy15634 28 QHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRDKG 98 (113)
Q Consensus 28 ~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~k~ 98 (113)
.+||||+||||||++++|..|..+||+++++|||++||++|++ +|...|++.+..|.+++|+|+|.|+..+
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~~ 78 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK 78 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC
Confidence 3799999999999999999999999999999999999999986 7999999999999999999999998554
No 10
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.89 E-value=1.3e-23 Score=135.41 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=68.9
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCC
Q psy15634 25 LGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRD 96 (113)
Q Consensus 25 k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~ 96 (113)
.++++||||+||||||++++|..|+.+||+++++|||++||++|++ +|...|++.+..|.+++|+|+|.|++
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~~ 81 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSS 81 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCC
Confidence 5789999999999999999999999999999999999999999986 79999999999999999999999986
No 11
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.88 E-value=4.6e-23 Score=137.91 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHH-------HHHHh
Q psy15634 22 HLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDI-------HVEAC 87 (113)
Q Consensus 22 ~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~-------h~~a~ 87 (113)
++.+|+++||||+||||||+++.|..|+.+||+++++|||++||++|++ +|...|++.+.. |...+
T Consensus 3 kk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 82 (99)
T 1k99_A 3 KLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDH 82 (99)
T ss_dssp CCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4568999999999999999999999999999999999999999999985 788889888887 67779
Q ss_pred cCCccCCCCC
Q psy15634 88 RKSNLFDRDK 97 (113)
Q Consensus 88 p~yky~pr~k 97 (113)
|||+|.|+..
T Consensus 83 P~~~~~~~~~ 92 (99)
T 1k99_A 83 PDLIQNAKKL 92 (99)
T ss_dssp CCCSCCCCC-
T ss_pred CCccCCCccc
Confidence 9999999864
No 12
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.85 E-value=5.1e-22 Score=124.11 Aligned_cols=64 Identities=31% Similarity=0.514 Sum_probs=55.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 28 QHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 28 ~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
++||||+||||||+++.|..|..++|+++++|||++||++|+. +|...|++.+..|.+++|+|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 4799999999999999999999999999999999999999985 799999999999999999996
No 13
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.85 E-value=1.6e-21 Score=123.97 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCcc
Q psy15634 24 NLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNL 92 (113)
Q Consensus 24 ~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky 92 (113)
++|+++||||+||||||++++|..|..+||+++++|||++||++|++ +|...|++.+..|.+++++|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999999999999975 7999999999999999999974
No 14
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.85 E-value=8.8e-22 Score=129.66 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCC
Q psy15634 24 NLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDR 95 (113)
Q Consensus 24 ~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr 95 (113)
.+|+++||||+||||||++++|..|+.+||++++.|||++||++|++ +|...|++.+..|.+++++|++.+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 37999999999999999999999999999999999999999999986 7999999999999999999988764
No 15
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.4e-21 Score=131.05 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccC
Q psy15634 21 SHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLF 93 (113)
Q Consensus 21 ~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~ 93 (113)
.+..+|+++||||+||||||++++|..|+.+||++++.|||++||++|++ +|...|++.+..|.+++++|++.
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 88 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRAS 88 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34468999999999999999999999999999999999999999999986 79999999999999999999987
Q ss_pred CCCCC
Q psy15634 94 DRDKG 98 (113)
Q Consensus 94 pr~k~ 98 (113)
+..+.
T Consensus 89 ~~~~~ 93 (102)
T 2co9_A 89 LVSKS 93 (102)
T ss_dssp HTSSC
T ss_pred ccccc
Confidence 76544
No 16
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=7.3e-21 Score=124.89 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCChhHhhHHHHHHHHHHHhcCCccCCC
Q psy15634 17 GLDTSHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLCPQKIELKSKRDIHVEACRKSNLFDR 95 (113)
Q Consensus 17 ~~~~~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~~y~~~a~~~k~~h~~a~p~yky~pr 95 (113)
.....+..+|+++||||+||||||++++|..|+.+||++++.|||++||++|++ +.+++++.|..+|..+..-+.+
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~---ls~eeK~~Y~~~A~~~k~~y~~ 83 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND---LSEKKKAKYKAREAALKAQSER 83 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHTTTTCC
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHH
Confidence 334455678999999999999999999999999999999999999999999976 8888899998888776655443
No 17
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1.5e-20 Score=118.70 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=61.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-----hhHhhHHHHHHHHHHHhcCCc
Q psy15634 27 EQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-----PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 27 ~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-----~y~~~a~~~k~~h~~a~p~yk 91 (113)
|++||||+||||||++++|..|+.+||+++++|||++||++|++ +|...|++.+..|.+++++|+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l~eK~~y~~~A~~~k~~y~~e~~~Y~ 70 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQRYHDEMRNYK 70 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTGGGT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999986 788889999999999999886
No 18
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=121.36 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCC--hHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCC
Q psy15634 20 TSHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMH--NSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKS 90 (113)
Q Consensus 20 ~~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~--~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~y 90 (113)
..+..+|+++||||+||||||++++|..|+.+||+++ +.|||++||++|++ +|...|++.+..|..+.++|
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445689999999999999999999999999999997 49999999999986 67777777777777777766
Q ss_pred c
Q psy15634 91 N 91 (113)
Q Consensus 91 k 91 (113)
+
T Consensus 86 ~ 86 (86)
T 2eqz_A 86 G 86 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.81 E-value=2e-21 Score=128.29 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHh
Q psy15634 15 PPGLDTSHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEAC 87 (113)
Q Consensus 15 p~~~~~~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~ 87 (113)
|+.....+..+|+++|+||+||||||++++|..|..+||+++++|||++||++|++ +|...|++.+..|..++
T Consensus 6 ~~k~~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~ 85 (93)
T 1cg7_A 6 EPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEK 85 (93)
T ss_dssp CCCCCCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHH
T ss_pred CCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455678999999999999999999999999999999999999999999986 56666666666677777
Q ss_pred cCCc
Q psy15634 88 RKSN 91 (113)
Q Consensus 88 p~yk 91 (113)
++|+
T Consensus 86 ~~Y~ 89 (93)
T 1cg7_A 86 ELYN 89 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 20
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.1e-20 Score=118.81 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=58.4
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhhCCCCC-hHHHHHHhhhhcCChhHhhHHHHHHHHHHHhcCC
Q psy15634 26 GEQHIKRPMNAFMVWSRIQRRKIALDNPKMH-NSIIFNCHIMHFLCPQKIELKSKRDIHVEACRKS 90 (113)
Q Consensus 26 ~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~-~~eISk~LG~~Wk~~y~~~a~~~k~~h~~a~p~y 90 (113)
++++|||||||||||++++|..|+.+||+++ ++|||++||++|+. +.+++++.|..+|..+.
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~---ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRV---LSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSS---SCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999998 99999999999998 99999999999987763
No 21
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.81 E-value=1.9e-20 Score=118.31 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=60.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-----hhHhhHHHHHHHHHHHhcCCc
Q psy15634 28 QHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-----PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 28 ~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-----~y~~~a~~~k~~h~~a~p~yk 91 (113)
+.||||+||||||++++|..|+.+||+++++|||++||++|++ +|...|++.+..|.+++++|+
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~K~~y~~~A~~~k~~y~~~~~~Y~ 70 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFE 70 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999975 899999999999999999885
No 22
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.7e-20 Score=121.85 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=66.2
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCC
Q psy15634 25 LGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRD 96 (113)
Q Consensus 25 k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~ 96 (113)
.++++||||+||||||++++|..|+.+||++++.|||++||++|++ +|...|++.+..|.+++++|+....+
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999999999999999999986 78888998889999999999886443
No 23
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.81 E-value=4.2e-20 Score=119.15 Aligned_cols=69 Identities=7% Similarity=-0.004 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCCh--HHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCcc
Q psy15634 24 NLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHN--SIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNL 92 (113)
Q Consensus 24 ~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~--~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky 92 (113)
++|+++||||+||||||++++|..|+.+||++++ +|||++||++|+. +|...|++.+..|..++++|+-
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 79 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 79 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999974 9999999999986 7999999999999999999863
No 24
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.80 E-value=1.4e-20 Score=124.90 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCC--hHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 21 SHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMH--NSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 21 ~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~--~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
.+..+|+++||||+||||||++++|..|..+||+++ ++|||++||++|++ +|...|++.+..|.+++++|+
T Consensus 14 ~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~ 93 (97)
T 2lhj_A 14 RKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYA 93 (97)
T ss_dssp TCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999999 99999999999985 799999999999999999986
Q ss_pred c
Q psy15634 92 L 92 (113)
Q Consensus 92 y 92 (113)
.
T Consensus 94 ~ 94 (97)
T 2lhj_A 94 Q 94 (97)
T ss_dssp H
T ss_pred h
Confidence 4
No 25
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.77 E-value=8.4e-19 Score=109.63 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=57.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCCCCh--HHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCC
Q psy15634 29 HIKRPMNAFMVWSRIQRRKIALDNPKMHN--SIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKS 90 (113)
Q Consensus 29 ~~KRPlNAFmlf~~~~R~~v~~~~P~~~~--~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~y 90 (113)
+||||+||||||++++|..|+.+||++++ +|||++||++|++ +|...|++.+..|..+..+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999987 9999999999985 78888999888888888776
No 26
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.77 E-value=9.5e-19 Score=124.40 Aligned_cols=73 Identities=37% Similarity=0.518 Sum_probs=67.7
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccCCCCCCC
Q psy15634 27 EQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLFDRDKGL 99 (113)
Q Consensus 27 ~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~pr~k~~ 99 (113)
+++||||+||||||+++.|..|..+||+++++|||++||++|+. +|...|+..+..|..++|+|++.++++++
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~kk 81 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKK 81 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCCCGG
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccccccc
Confidence 67899999999999999999999999999999999999999985 79999999999999999999999875543
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=124.66 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCcc
Q psy15634 21 SHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNL 92 (113)
Q Consensus 21 ~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky 92 (113)
.+..+|+++||||+||||||++++|..|..+||+++++||+++||++|++ +|...|++.+..|..++++|++
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457999999999999999999999999999999999999999999985 7999999999999999999976
No 28
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.72 E-value=7.5e-18 Score=119.74 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 21 SHLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 21 ~~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
.+..+|++.||||+||||||++++|..|..+||+++++||+++||++|++ +|...|++.+..|..+.++|+
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 157 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34468999999999999999999999999999999999999999999985 788888888888888888775
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=118.02 Aligned_cols=72 Identities=7% Similarity=-0.047 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCC--CChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCcc
Q psy15634 22 HLNLGEQHIKRPMNAFMVWSRIQRRKIALDNPK--MHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNL 92 (113)
Q Consensus 22 ~~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~--~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky 92 (113)
...+|+++||||+||||||++++|..|..+||+ ++++|||++||++|+. +|...|++.+..|..++++|.-
T Consensus 8 ~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 87 (173)
T 2yrq_A 8 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 87 (173)
T ss_dssp SSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 346799999999999999999999999999999 6899999999999985 7888888888889999999875
Q ss_pred C
Q psy15634 93 F 93 (113)
Q Consensus 93 ~ 93 (113)
.
T Consensus 88 ~ 88 (173)
T 2yrq_A 88 P 88 (173)
T ss_dssp C
T ss_pred h
Confidence 3
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.67 E-value=5.1e-17 Score=110.14 Aligned_cols=68 Identities=6% Similarity=-0.064 Sum_probs=61.0
Q ss_pred CCCCCCCCCC-CCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCcc
Q psy15634 21 SHLNLGEQHI-KRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNL 92 (113)
Q Consensus 21 ~~~~k~~~~~-KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky 92 (113)
.++.+|+++| |||+||||||++++|..|+ +++++||+++||++|+. +|...|++.+..|..++++|+-
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456899999 9999999999999999987 78999999999999985 7888899988899999988864
No 31
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-17 Score=108.03 Aligned_cols=61 Identities=10% Similarity=0.052 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHh---hhhcCChhHhhHHHHHHHHHHHhcC
Q psy15634 24 NLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCH---IMHFLCPQKIELKSKRDIHVEACRK 89 (113)
Q Consensus 24 ~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~L---G~~Wk~~y~~~a~~~k~~h~~a~p~ 89 (113)
..++++|||||||||||++++|..|+.+ +++++|||++| |++|+. +.++++++|.++|..+
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~---ls~eEK~pYe~~A~~~ 68 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWAL---LREEEKEKYAEMAREW 68 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHH---SCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 89999999999 999976 5566666665555443
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=98.13 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=47.3
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCC
Q psy15634 28 QHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKS 90 (113)
Q Consensus 28 ~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~y 90 (113)
++||||+||||||++++|..|+.++| +|||++||++|++ +|...|++.+..|..+...|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999988776 7999999999986 56666666655555554443
No 33
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.62 E-value=6.3e-16 Score=103.57 Aligned_cols=65 Identities=9% Similarity=-0.145 Sum_probs=55.8
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 25 LGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 25 k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
....+||||+||||||+++++. ..+++++++.||+++||++|+. +|...|++.+..|..++++|.
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 75 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWV 75 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999964 3455668889999999999986 788899998899999988886
No 34
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-17 Score=109.68 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCC--hHHHHHHhhhhcCChhHhhHHHHHHHHHHHhc
Q psy15634 23 LNLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMH--NSIIFNCHIMHFLCPQKIELKSKRDIHVEACR 88 (113)
Q Consensus 23 ~~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~--~~eISk~LG~~Wk~~y~~~a~~~k~~h~~a~p 88 (113)
..+|++.||||+|||||||+++|..|+.+||+++ ++||| ++|+. +.++++++|..+|..
T Consensus 16 ~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~---ls~eeK~pY~~kA~~ 76 (90)
T 2yuk_A 16 WEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRK---ASSQERAPYVQKARD 76 (90)
T ss_dssp HHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHH---SCHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHc---CCHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999 99999 99976 445555555544443
No 35
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.1e-16 Score=118.79 Aligned_cols=68 Identities=10% Similarity=0.145 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 24 NLGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 24 ~k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
..++++||||+||||||+++.|..|+.+||+++++|||++||++|+. +|...|...+..|.++..+|.
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~ 110 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFK 110 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999985 788888888888888888774
No 36
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.59 E-value=2.5e-15 Score=99.58 Aligned_cols=64 Identities=6% Similarity=-0.047 Sum_probs=59.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCcc
Q psy15634 28 QHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNL 92 (113)
Q Consensus 28 ~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky 92 (113)
+.|+||++|||||+++.|..+..++|+ +++||||.||++|+. +|...|++.+..++.+..+|+-
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~ 73 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA 73 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 579999999999999999999999999 999999999999985 7888888888888888888864
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=114.15 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCc
Q psy15634 25 LGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSN 91 (113)
Q Consensus 25 k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yk 91 (113)
..+++||||+||||||+++.|..|+.+||+++++|||++||++|+. +|...|.+.+..|.++.++|.
T Consensus 5 ~~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~ 78 (214)
T 3tq6_A 5 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFK 78 (214)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhc
Confidence 3577899999999999999999999999999999999999999985 788888888888888888874
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.43 E-value=1.1e-14 Score=108.65 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=58.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccC
Q psy15634 25 LGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLF 93 (113)
Q Consensus 25 k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~ 93 (113)
+|++.||||+||||||++++|..|..++|+ ||+++||++|++ +|...|++.+..|..+.++|+-.
T Consensus 110 kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 110 TLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999998777664 999999999986 79999999999999988888753
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.40 E-value=2e-14 Score=108.82 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=59.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhhCCCCChHHHHHHhhhhcCC-------hhHhhHHHHHHHHHHHhcCCccC
Q psy15634 25 LGEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSIIFNCHIMHFLC-------PQKIELKSKRDIHVEACRKSNLF 93 (113)
Q Consensus 25 k~~~~~KRPlNAFmlf~~~~R~~v~~~~P~~~~~eISk~LG~~Wk~-------~y~~~a~~~k~~h~~a~p~yky~ 93 (113)
+|++.||||+||||||++++|..|..++|+ ||+++||++|++ +|...|++.+..|..+.++|+..
T Consensus 142 kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 142 TLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999998877664 999999999985 89999999999999999999764
No 40
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=27.23 E-value=63 Score=18.07 Aligned_cols=25 Identities=0% Similarity=-0.146 Sum_probs=17.8
Q ss_pred HHHHHHhhC-----CCCChHHHHHHhhhhc
Q psy15634 44 QRRKIALDN-----PKMHNSIIFNCHIMHF 68 (113)
Q Consensus 44 ~R~~v~~~~-----P~~~~~eISk~LG~~W 68 (113)
.|.-|...+ .+++..||+..+|---
T Consensus 10 er~il~l~~~l~~~~g~s~~eIA~~lgis~ 39 (68)
T 2p7v_B 10 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 39 (68)
T ss_dssp HHHHHHHHTTTTSSSCCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHCcCH
Confidence 344444444 7899999999998644
No 41
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=25.24 E-value=47 Score=20.24 Aligned_cols=32 Identities=6% Similarity=-0.144 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHH---HhhCC---CCChHHHHHHhhhh
Q psy15634 36 AFMVWSRIQRRKI---ALDNP---KMHNSIIFNCHIMH 67 (113)
Q Consensus 36 AFmlf~~~~R~~v---~~~~P---~~~~~eISk~LG~~ 67 (113)
+||-.+.+....| ..+++ .++..||++.||--
T Consensus 3 ~~~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs 40 (81)
T 1qbj_A 3 HMLSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTP 40 (81)
T ss_dssp ---CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCC
T ss_pred CccccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC
Confidence 3555555544443 44667 78999999999944
Done!