RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15634
(113 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 45.9 bits (109), Expect = 1e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 29 HIKRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
+KRPMNAFMVWSR QRRK+A +NPKMHNS I
Sbjct: 2 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEI 33
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 46.0 bits (109), Expect = 2e-08
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 29 HIKRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
HIK+P+NAFM++ + R + ++ ++ I
Sbjct: 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAI 33
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 45.2 bits (107), Expect = 2e-08
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 29 HIKRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
HIKRPMNAFMVW++ +RRKI P MHNS I
Sbjct: 2 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNI 33
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 44.4 bits (105), Expect = 5e-08
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 27 EQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
+ +KRPMNAF+VWSR QRRK+AL+NP+M NS I
Sbjct: 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEI 35
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 41.4 bits (97), Expect = 7e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 31 KRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
KRP +AF ++ R KI ++P + +
Sbjct: 4 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDV 33
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 40.5 bits (95), Expect = 1e-06
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 31 KRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
KRP++A+M+W R I +NP + + +
Sbjct: 5 KRPLSAYMLWLNSARESIKRENPGIKVTEV 34
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 41.1 bits (96), Expect = 1e-06
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 26 GEQHIKRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
G + KRP++A ++S +RR++ + P++ S +
Sbjct: 17 GSEKPKRPVSAMFIFSEEKRRQLQEERPELSESEL 51
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 39.9 bits (93), Expect = 4e-06
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 29 HIKRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
KR ++A+M ++ R + +NP + +
Sbjct: 20 APKRALSAYMFFANENRDIVRSENPDITFGQV 51
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 37.9 bits (88), Expect = 3e-05
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 29 HIKRPMNAFMVWSRIQRRKIALDNPKMH 56
K PMN + +S+ L++ +
Sbjct: 8 PKKPPMNGYQKFSQELLSNGELNHLPLK 35
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 37.2 bits (86), Expect = 4e-05
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 29 HIKRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
K+P+ + + +R K A +P+M N +
Sbjct: 10 FPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDL 41
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 35.6 bits (82), Expect = 1e-04
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 31 KRPMNAFMVWSRIQRRKIALDNPKMH 56
+ M+++ + + R + +P
Sbjct: 3 RGKMSSYAFFVQTCREEHKKKHPDAS 28
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 30.7 bits (69), Expect = 0.013
Identities = 3/30 (10%), Positives = 9/30 (30%)
Query: 31 KRPMNAFMVWSRIQRRKIALDNPKMHNSII 60
K P N++ ++ + +
Sbjct: 19 KPPPNSYSLYCAELMANMKDVPSTERMVLC 48
>d3ebya1 d.17.4.4 (A:6-162) Putative hydroxylase subunit Saro3860
{Novosphingobium aromaticivorans [TaxId: 48935]}
Length = 157
Score = 26.7 bits (58), Expect = 0.58
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 42 RIQRRKIALDNPKMHNSIIF 61
R++ R D ++ +
Sbjct: 136 RLKSRTCIYDTLRIATLLAT 155
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of
urease, catalytic domain {Klebsiella aerogenes [TaxId:
28451]}
Length = 385
Score = 25.8 bits (57), Expect = 1.1
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 61 FNCHIMHFLCPQKIE 75
+ HI H++CPQ+ E
Sbjct: 2 IDTHI-HWICPQQAE 15
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 25.8 bits (57), Expect = 1.2
Identities = 4/15 (26%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 61 FNCHIMHFLCPQKIE 75
+ H+ HF+ P +++
Sbjct: 3 IDTHV-HFINPDQVD 16
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 25.8 bits (57), Expect = 1.2
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 61 FNCHIMHFLCPQKIE 75
+ HI HF+ PQ+I
Sbjct: 2 IDTHI-HFISPQQIP 15
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome
bc1 complex (Ubiquinol-cytochrome c reductase),
transmembrane anchor {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 47
Score = 22.3 bits (48), Expect = 6.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 40 WSRIQRRKIALDNPK 54
W+ I+ RK + PK
Sbjct: 32 WAGIKTRKFVFNPPK 46
>d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 197
Score = 23.4 bits (50), Expect = 8.9
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 2 SLSSHHQHSYFSMPPGLDTSHLNLGEQHIKRPMNAFMVWSRIQRRKIALD 51
+ S H+HS + + + G ++ M A +V R R+ I LD
Sbjct: 65 NHSGLHRHSAY-----ILQNSDLPGFNQEQQLMMATLV--RYHRKAIKLD 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.135 0.426
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 423,705
Number of extensions: 17115
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 23
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)