Query psy15636
Match_columns 101
No_of_seqs 131 out of 1040
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:45:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 2.4E-21 5.2E-26 121.1 8.7 68 34-101 13-82 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.9 1.5E-21 3.3E-26 117.6 7.5 59 43-101 1-59 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.9 2.8E-21 6E-26 115.1 7.6 59 43-101 1-59 (72)
4 KOG0527|consensus 99.8 2.3E-20 5E-25 138.4 8.8 67 35-101 54-120 (331)
5 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 6.3E-20 1.4E-24 106.7 7.4 58 44-101 1-58 (66)
6 PF00505 HMG_box: HMG (high mo 99.8 1.8E-19 3.9E-24 105.7 6.6 58 44-101 1-58 (69)
7 smart00398 HMG high mobility g 99.8 7.1E-19 1.5E-23 102.8 7.6 59 43-101 1-59 (70)
8 cd00084 HMG-box High Mobility 99.8 9E-19 2E-23 101.3 7.5 58 44-101 1-58 (66)
9 PF09011 HMG_box_2: HMG-box do 99.7 6E-18 1.3E-22 100.9 6.8 61 41-101 1-62 (73)
10 COG5648 NHP6B Chromatin-associ 99.7 6.1E-17 1.3E-21 112.8 6.7 66 35-100 62-127 (211)
11 KOG0381|consensus 99.6 9.2E-16 2E-20 95.3 7.7 60 42-101 21-80 (96)
12 KOG3248|consensus 99.5 1.3E-14 2.8E-19 107.3 6.0 62 40-101 188-249 (421)
13 KOG0528|consensus 99.5 2.8E-14 6E-19 109.2 4.2 69 32-100 314-382 (511)
14 KOG0526|consensus 99.4 5.9E-13 1.3E-17 103.2 5.4 63 35-101 527-589 (615)
15 KOG4715|consensus 99.2 1.5E-10 3.3E-15 85.3 7.7 67 35-101 56-122 (410)
16 KOG2746|consensus 99.0 4.1E-10 8.9E-15 89.3 3.7 67 35-101 173-241 (683)
17 PF04690 YABBY: YABBY protein; 98.0 8.2E-05 1.8E-09 51.0 8.8 49 38-86 116-164 (170)
18 PF06382 DUF1074: Protein of u 97.8 5.3E-05 1.2E-09 52.1 5.8 47 48-98 83-129 (183)
19 PF14887 HMG_box_5: HMG (high 97.5 0.00057 1.2E-08 41.2 5.9 57 43-100 3-59 (85)
20 PF08073 CHDNT: CHDNT (NUC034) 96.9 0.0027 5.8E-08 35.9 4.3 39 48-86 13-51 (55)
21 PF04769 MAT_Alpha1: Mating-ty 96.7 0.006 1.3E-07 42.9 6.0 56 37-98 37-92 (201)
22 COG5648 NHP6B Chromatin-associ 96.7 0.0013 2.9E-08 46.3 2.6 61 41-101 141-201 (211)
23 PF06244 DUF1014: Protein of u 94.7 0.095 2.1E-06 34.2 4.9 49 39-87 67-116 (122)
24 PF12881 NUT_N: NUT protein N 90.7 0.87 1.9E-05 34.2 5.6 37 64-100 245-281 (328)
25 PRK15117 ABC transporter perip 86.4 1.4 3E-05 31.0 4.1 33 67-99 66-99 (211)
26 TIGR03481 HpnM hopanoid biosyn 85.5 1.4 3E-05 30.8 3.7 32 68-99 63-95 (198)
27 KOG3223|consensus 82.7 2.4 5.3E-05 29.9 3.9 47 42-88 162-209 (221)
28 PF01352 KRAB: KRAB box; Inte 82.1 1.5 3.2E-05 23.1 2.1 29 70-98 2-31 (41)
29 PF13875 DUF4202: Domain of un 78.1 8.5 0.00018 26.9 5.4 40 50-92 131-170 (185)
30 PF05494 Tol_Tol_Ttg2: Toluene 74.5 2.3 5.1E-05 28.5 1.8 33 67-99 36-69 (170)
31 PF06945 DUF1289: Protein of u 71.5 9.5 0.00021 20.8 3.5 24 69-97 22-45 (51)
32 PRK10236 hypothetical protein; 68.7 7 0.00015 28.3 3.2 23 74-96 118-140 (237)
33 PF11304 DUF3106: Protein of u 67.7 13 0.00029 23.4 4.1 22 76-97 14-35 (107)
34 PF12650 DUF3784: Domain of un 66.8 4.6 9.9E-05 24.7 1.8 15 82-96 26-40 (97)
35 PF11304 DUF3106: Protein of u 63.5 35 0.00075 21.5 5.6 38 61-98 33-72 (107)
36 KOG0713|consensus 62.8 22 0.00047 27.1 5.0 41 56-96 35-80 (336)
37 PRK14296 chaperone protein Dna 62.5 18 0.0004 27.6 4.7 40 56-95 23-66 (372)
38 PRK14283 chaperone protein Dna 61.0 24 0.00052 26.9 5.1 42 55-96 23-68 (378)
39 PF09164 VitD-bind_III: Vitami 60.6 32 0.00069 20.1 4.6 33 49-81 9-41 (68)
40 PRK14291 chaperone protein Dna 59.3 24 0.00051 27.0 4.8 40 56-95 22-65 (382)
41 PRK14279 chaperone protein Dna 57.5 24 0.00053 27.1 4.6 41 56-96 28-73 (392)
42 PTZ00037 DnaJ_C chaperone prot 56.8 29 0.00063 27.1 5.0 42 55-96 46-88 (421)
43 PRK14299 chaperone protein Dna 55.3 33 0.00071 25.2 4.9 40 56-95 23-66 (291)
44 PRK14285 chaperone protein Dna 54.6 23 0.00051 26.9 4.1 40 56-95 22-66 (365)
45 PF05388 Carbpep_Y_N: Carboxyp 54.2 33 0.00071 22.0 4.1 29 71-99 45-73 (113)
46 PRK14280 chaperone protein Dna 54.0 35 0.00075 26.1 4.9 40 56-95 23-66 (376)
47 PRK10266 curved DNA-binding pr 53.0 47 0.001 24.6 5.4 40 56-95 23-66 (306)
48 PRK14295 chaperone protein Dna 52.6 38 0.00082 26.0 5.0 41 56-96 28-73 (389)
49 PRK14287 chaperone protein Dna 52.3 40 0.00087 25.7 5.1 41 56-96 23-67 (371)
50 PRK14281 chaperone protein Dna 50.9 31 0.00068 26.5 4.3 41 55-95 21-66 (397)
51 PF06628 Catalase-rel: Catalas 50.7 21 0.00046 20.4 2.6 19 77-95 12-30 (68)
52 PRK14288 chaperone protein Dna 49.2 52 0.0011 25.0 5.2 40 56-95 22-66 (369)
53 PRK14294 chaperone protein Dna 49.1 49 0.0011 25.1 5.0 40 56-95 23-67 (366)
54 PRK12751 cpxP periplasmic stre 48.0 40 0.00086 23.0 4.0 26 74-99 119-144 (162)
55 PRK14276 chaperone protein Dna 47.7 45 0.00098 25.5 4.7 40 56-95 23-66 (380)
56 PRK09897 hypothetical protein; 47.5 76 0.0016 25.6 6.1 34 66-99 344-381 (534)
57 PRK14298 chaperone protein Dna 47.0 41 0.00088 25.7 4.4 41 56-96 24-68 (377)
58 PRK14286 chaperone protein Dna 46.8 57 0.0012 24.9 5.1 39 56-94 23-67 (372)
59 PRK14284 chaperone protein Dna 46.2 51 0.0011 25.3 4.8 41 56-96 20-65 (391)
60 PF02026 RyR: RyR domain; Int 45.3 24 0.00051 21.8 2.4 18 82-99 61-78 (94)
61 cd08317 Death_ank Death domain 42.5 15 0.00033 21.8 1.2 20 67-86 3-22 (84)
62 PRK14278 chaperone protein Dna 42.3 55 0.0012 25.0 4.4 40 56-95 22-65 (378)
63 KOG1610|consensus 41.8 51 0.0011 25.0 4.1 47 53-99 187-246 (322)
64 PF15076 DUF4543: Domain of un 40.5 30 0.00066 20.3 2.2 24 35-58 23-46 (75)
65 PF08367 M16C_assoc: Peptidase 39.9 45 0.00098 23.7 3.5 30 71-100 12-41 (248)
66 COG0484 DnaJ DnaJ-class molecu 38.8 70 0.0015 24.8 4.5 41 56-96 23-68 (371)
67 PRK14277 chaperone protein Dna 37.9 84 0.0018 24.1 4.8 40 56-95 24-68 (386)
68 PF15581 Imm35: Immunity prote 37.7 95 0.0021 19.2 4.1 23 70-92 31-53 (93)
69 PF00226 DnaJ: DnaJ domain; I 37.3 71 0.0015 17.3 3.4 39 55-93 18-63 (64)
70 KOG0715|consensus 37.2 89 0.0019 23.1 4.7 42 56-97 62-107 (288)
71 PRK10767 chaperone protein Dna 36.7 89 0.0019 23.7 4.8 40 56-95 23-67 (371)
72 PF13945 NST1: Salt tolerance 36.5 60 0.0013 22.8 3.6 27 71-97 100-126 (190)
73 PF13412 HTH_24: Winged helix- 36.0 42 0.0009 17.3 2.2 24 62-85 11-34 (48)
74 PRK14292 chaperone protein Dna 35.3 86 0.0019 23.8 4.5 40 56-95 21-64 (371)
75 PRK14290 chaperone protein Dna 34.9 65 0.0014 24.4 3.8 40 56-95 22-67 (365)
76 PRK14297 chaperone protein Dna 34.5 67 0.0015 24.5 3.8 40 56-95 23-67 (380)
77 PF00887 ACBP: Acyl CoA bindin 34.0 1E+02 0.0022 18.2 4.2 49 51-100 30-82 (87)
78 PRK14301 chaperone protein Dna 33.6 83 0.0018 24.0 4.2 40 56-95 23-67 (373)
79 COG3313 Predicted Fe-S protein 32.5 54 0.0012 19.6 2.4 19 70-93 28-46 (74)
80 smart00271 DnaJ DnaJ molecular 32.3 42 0.00091 17.9 1.9 33 56-88 20-58 (60)
81 TIGR02349 DnaJ_bact chaperone 32.2 1E+02 0.0022 23.2 4.4 39 56-94 19-62 (354)
82 PF12472 DUF3693: Phage relate 31.3 53 0.0012 18.4 2.2 18 83-100 8-25 (60)
83 PF11521 TFIIE-A_C-term: C-ter 31.0 95 0.0021 18.9 3.4 29 70-99 51-79 (86)
84 KOG0493|consensus 30.8 1.3E+02 0.0029 22.5 4.6 13 41-53 243-255 (342)
85 PRK10455 periplasmic protein; 30.0 1.3E+02 0.0027 20.4 4.2 26 74-99 119-144 (161)
86 PHA03102 Small T antigen; Revi 28.4 1.2E+02 0.0026 20.5 3.8 36 56-91 26-62 (153)
87 PRK14293 chaperone protein Dna 28.4 1.4E+02 0.003 22.8 4.6 41 55-95 21-66 (374)
88 PRK14282 chaperone protein Dna 28.0 1.2E+02 0.0027 23.0 4.3 40 56-95 23-68 (369)
89 PRK14300 chaperone protein Dna 27.8 1.6E+02 0.0035 22.4 4.9 41 56-96 22-66 (372)
90 PRK10363 cpxP periplasmic repr 27.2 1.4E+02 0.0029 20.6 4.0 27 73-99 112-138 (166)
91 PRK12750 cpxP periplasmic repr 26.4 1.4E+02 0.0029 20.4 3.9 23 76-98 128-150 (170)
92 PF12926 MOZART2: Mitotic-spin 25.9 1.6E+02 0.0035 18.1 3.7 28 67-94 5-32 (88)
93 COG2854 Ttg2D ABC-type transpo 25.0 63 0.0014 22.9 2.1 24 75-98 77-100 (202)
94 KOG1827|consensus 25.0 7.2 0.00016 32.1 -2.9 44 47-90 552-595 (629)
95 COG2938 Uncharacterized conser 24.4 1.4E+02 0.003 18.6 3.3 24 74-97 33-56 (94)
96 PF11334 DUF3136: Protein of u 24.2 1.3E+02 0.0028 17.4 2.9 31 50-85 9-39 (64)
97 PRK14289 chaperone protein Dna 23.7 2.2E+02 0.0048 21.7 5.0 40 56-95 24-69 (386)
98 PF07757 AdoMet_MTase: Predict 23.5 68 0.0015 20.6 1.8 25 74-98 18-42 (112)
99 PF07813 LTXXQ: LTXXQ motif fa 23.1 1.7E+02 0.0036 17.0 3.9 26 71-96 74-99 (100)
100 PF08373 RAP: RAP domain; Int 23.1 68 0.0015 17.2 1.6 15 81-95 41-56 (58)
101 cd06257 DnaJ DnaJ domain or J- 21.9 1.3E+02 0.0029 15.4 3.5 31 56-86 19-54 (55)
102 PF07836 DmpG_comm: DmpG-like 20.9 1.7E+02 0.0036 17.0 3.0 29 49-82 19-47 (66)
103 PLN02150 terpene synthase/cycl 20.7 59 0.0013 20.0 1.1 19 70-88 24-42 (96)
104 PF14098 SSPI: Small, acid-sol 20.6 1.9E+02 0.0041 16.7 3.6 25 73-97 37-61 (65)
105 cd00922 Cyt_c_Oxidase_IV Cytoc 20.5 69 0.0015 21.1 1.5 16 81-96 43-58 (136)
106 cd01670 Death Death Domain: a 20.4 62 0.0013 18.3 1.1 15 72-86 3-17 (79)
107 TIGR00787 dctP tripartite ATP- 20.2 1.2E+02 0.0026 21.3 2.9 21 79-99 213-233 (257)
108 cd08785 CARD_CARD9-like Caspas 20.2 75 0.0016 19.3 1.5 17 43-59 59-75 (86)
109 PRK09731 putative general secr 20.1 2.5E+02 0.0054 19.4 4.2 37 49-93 4-40 (178)
110 PF11460 DUF3007: Protein of u 20.0 2.5E+02 0.0054 17.8 5.5 20 77-96 82-101 (104)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.86 E-value=2.4e-21 Score=121.09 Aligned_cols=68 Identities=24% Similarity=0.516 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 34 HLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMH--NSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 34 ~~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~--~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.....++++.||||+|||++||.++|..|..+||++. +.+|+++||++|+.|++++|++|+++|+.+|
T Consensus 13 ~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk 82 (94)
T PTZ00199 13 NKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDK 82 (94)
T ss_pred cCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999999986 8999999999999999999999999998864
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.86 E-value=1.5e-21 Score=117.55 Aligned_cols=59 Identities=27% Similarity=0.533 Sum_probs=57.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 43 ~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
+||||+|||||||++.|..|+.++|++++.+|+++||++|+.|++++|++|.++|+++|
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k 59 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEK 59 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998864
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.85 E-value=2.8e-21 Score=115.15 Aligned_cols=59 Identities=53% Similarity=0.895 Sum_probs=56.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 43 ~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++|||+||||+||++.|..++.+||++++.+|+++||+.|+.|++++|++|.++|+++|
T Consensus 1 ~iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k 59 (72)
T cd01388 1 HIKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLK 59 (72)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998864
No 4
>KOG0527|consensus
Probab=99.83 E-value=2.3e-20 Score=138.44 Aligned_cols=67 Identities=76% Similarity=1.202 Sum_probs=63.9
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 35 LGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 35 ~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
...++..+++||||||||+|.+..|.+|..++|.+.+.||+|+||.+|+.|+++||++|+++|+++|
T Consensus 54 ~~~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR 120 (331)
T KOG0527|consen 54 MKDKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLR 120 (331)
T ss_pred ccCCCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999999999999999999999986
No 5
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.82 E-value=6.3e-20 Score=106.66 Aligned_cols=58 Identities=36% Similarity=0.688 Sum_probs=55.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 44 IKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 44 pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
||||+|||++|+++.|..++.++|++++.+|++.||++|+.|++++|++|.++|++++
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~ 58 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDK 58 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999998763
No 6
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.80 E-value=1.8e-19 Score=105.65 Aligned_cols=58 Identities=45% Similarity=0.726 Sum_probs=53.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 44 IKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 44 pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
||||+|||+|||.+.+..++.++|+++..+|+++||++|+.|++++|++|.++|++++
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~ 58 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEK 58 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999998753
No 7
>smart00398 HMG high mobility group.
Probab=99.79 E-value=7.1e-19 Score=102.83 Aligned_cols=59 Identities=49% Similarity=0.870 Sum_probs=56.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 43 ~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.||||+|+|++|+++.|..+..++|++++.+|+++||++|+.|++++|++|.++|++++
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~ 59 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDK 59 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999998763
No 8
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.78 E-value=9e-19 Score=101.32 Aligned_cols=58 Identities=36% Similarity=0.668 Sum_probs=55.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 44 IKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 44 pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
||||+|||++|+++.+..++.++|+++..+|++.||.+|+.|++++|.+|.++|++++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~ 58 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDK 58 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999998763
No 9
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.74 E-value=6e-18 Score=100.92 Aligned_cols=61 Identities=28% Similarity=0.488 Sum_probs=52.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 41 EGHIKRPMNAFMVWSRGQRRKMALD-NPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 41 ~~~pkRP~saf~lf~~~~r~~~~~~-~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
|++||||+|||+||+.+.+..++.. .+.....|+++.|++.|+.||++||.+|+++|+.+|
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k 62 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDK 62 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999988 778889999999999999999999999999998764
No 10
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.69 E-value=6.1e-17 Score=112.78 Aligned_cols=66 Identities=32% Similarity=0.581 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy15636 35 LGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100 (101)
Q Consensus 35 ~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~ 100 (101)
..+.++++.||||++|||+|+.+.|.+++.++|.+++.+|++++|++|+.|+++||++|..+|..+
T Consensus 62 ~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~ 127 (211)
T COG5648 62 VRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSD 127 (211)
T ss_pred HHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhH
Confidence 456779999999999999999999999999999999999999999999999999999999998765
No 11
>KOG0381|consensus
Probab=99.64 E-value=9.2e-16 Score=95.35 Aligned_cols=60 Identities=40% Similarity=0.729 Sum_probs=57.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 42 ~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
+.|+||++||++|+.+.|..++.++|++...+|++++|++|+.|++++|.+|+..|.++|
T Consensus 21 ~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k 80 (96)
T KOG0381|consen 21 QAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLK 80 (96)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999888764
No 12
>KOG3248|consensus
Probab=99.53 E-value=1.3e-14 Score=107.29 Aligned_cols=62 Identities=29% Similarity=0.573 Sum_probs=59.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 40 ~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
+..++|+|+||||||++|.|.+|.+++-.....+|-++||++|..||.||...|+++|.++|
T Consensus 188 KkphiKKPLNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKer 249 (421)
T KOG3248|consen 188 KKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKER 249 (421)
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999998889999999999999999999999999999875
No 13
>KOG0528|consensus
Probab=99.48 E-value=2.8e-14 Score=109.22 Aligned_cols=69 Identities=52% Similarity=0.899 Sum_probs=62.6
Q ss_pred ccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy15636 32 SLHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100 (101)
Q Consensus 32 ~~~~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~ 100 (101)
.+..++...+.++||||||||+|.++.|.+|...+|++.+..|+++||.+|+.|+-.||++|+++-+++
T Consensus 314 ~srrg~~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRL 382 (511)
T KOG0528|consen 314 ESRRGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARL 382 (511)
T ss_pred ccccCcCCCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHH
Confidence 334566677899999999999999999999999999999999999999999999999999999887664
No 14
>KOG0526|consensus
Probab=99.38 E-value=5.9e-13 Score=103.18 Aligned_cols=63 Identities=22% Similarity=0.452 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 35 LGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 35 ~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
..++++|+.|||+++|||+|....|..|+.+ ++++++|++.+|++|+.|+. |.+|+++|+.+|
T Consensus 527 ~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk 589 (615)
T KOG0526|consen 527 GKKKKDPNAPKRATSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDK 589 (615)
T ss_pred cccCCCCCCCccchhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcc--cchhhHHHHHHH
Confidence 4566789999999999999999999999988 99999999999999999999 999999998765
No 15
>KOG4715|consensus
Probab=99.15 E-value=1.5e-10 Score=85.33 Aligned_cols=67 Identities=22% Similarity=0.421 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 35 LGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 35 ~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
....+.+..|-+|+-+||.|++..|+.|++.||++..-||.++||.+|..|+++||+.|.+.++-+|
T Consensus 56 ~t~pkpPkppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEK 122 (410)
T KOG4715|consen 56 ITRPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEK 122 (410)
T ss_pred ccCCCCCCCCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence 4566678889999999999999999999999999999999999999999999999999998887554
No 16
>KOG2746|consensus
Probab=98.97 E-value=4.1e-10 Score=89.28 Aligned_cols=67 Identities=34% Similarity=0.564 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHH--HHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 35 LGHHHSEGHIKRPMNAFMVWSRGQR--RKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 35 ~~~~~~~~~pkRP~saf~lf~~~~r--~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
...+.+..+++||||+|++|++.+| ..+...||+..+..|++++|+.|-.|-+.||+.|.++|.+.|
T Consensus 173 spnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk 241 (683)
T KOG2746|consen 173 SPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQVK 241 (683)
T ss_pred CCCcCcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHHHH
Confidence 3456678899999999999999999 889999999999999999999999999999999999998653
No 17
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.99 E-value=8.2e-05 Score=51.04 Aligned_cols=49 Identities=12% Similarity=0.310 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q psy15636 38 HHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLT 86 (101)
Q Consensus 38 ~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls 86 (101)
.+.+.+-.|-++||-.|+++.-+.|++++|++++.|....+++.|...+
T Consensus 116 ~kPPEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 116 NKPPEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred cCCccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhCc
Confidence 3344555677999999999999999999999999999999999998764
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.84 E-value=5.3e-05 Score=52.11 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy15636 48 MNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 48 ~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~ 98 (101)
-++|+-|+.+++. .|.++...|+....+..|..|++++|..|..++.
T Consensus 83 nnaYLNFLReFRr----kh~~L~p~dlI~~AAraW~rLSe~eK~rYrr~~~ 129 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCGLSPQDLIQRAARAWCRLSEAEKNRYRRMAP 129 (183)
T ss_pred chHHHHHHHHHHH----HccCCCHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 4789999999776 5689999999999999999999999999998653
No 19
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=97.49 E-value=0.00057 Score=41.20 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=47.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy15636 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100 (101)
Q Consensus 43 ~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~ 100 (101)
.|..|.+|--+|.+.....+.+.++.-...++ +.+...|+.|++.+|-.|..+|.++
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~dr~K~~-kam~~~W~~me~Kekl~WIkKA~Ed 59 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRNDRKKAL-KAMEAQWSQMEKKEKLKWIKKAAED 59 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTSTHHHHH-HHHHHHHHTTGGGHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 46778899999999999999999998887774 4899999999999999999998875
No 20
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.89 E-value=0.0027 Score=35.89 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q psy15636 48 MNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLT 86 (101)
Q Consensus 48 ~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls 86 (101)
++.|-+|.+-.|+.|.+.+|++....+...++..|++-+
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrEF~ 51 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWREFQ 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999998754
No 21
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=96.71 E-value=0.006 Score=42.95 Aligned_cols=56 Identities=27% Similarity=0.291 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy15636 37 HHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 37 ~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~ 98 (101)
.+....+.+||+|+||+|+.-+- .-.|+....+++..|+..|..=.. |..|.-.|+
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak 92 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYS----PIFPPLPQKELSGILTKLWEKDPF--KNKWSLMAK 92 (201)
T ss_pred ccccccccccchhHHHHHHHHHH----hhcCCcCHHHHHHHHHHHHhCCcc--HhHHHHHhh
Confidence 44456678999999999977655 446789999999999999987433 455554443
No 22
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=96.71 E-value=0.0013 Score=46.34 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=53.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 41 EGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 41 ~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
...++.|.-+|+-+-.+.|+.+...+|.....+++++++..|..|++..|..|.+.+.+++
T Consensus 141 k~~~~~~~~~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k 201 (211)
T COG5648 141 KLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLK 201 (211)
T ss_pred ccCCCCCCchhhhccHHhccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHH
Confidence 3446677888888888999999889999999999999999999999999999999887653
No 23
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=94.73 E-value=0.095 Score=34.21 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=41.6
Q ss_pred CCCCCCCCCC-cHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH
Q psy15636 39 HSEGHIKRPM-NAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTE 87 (101)
Q Consensus 39 ~~~~~pkRP~-saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~ 87 (101)
....+|-|-+ -||.-|+...-+.++.++|++..+.+-.+|-..|..-++
T Consensus 67 ~~drHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 67 PIDRHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred CCCCCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCC
Confidence 4455565555 689999999999999999999999999999999986553
No 24
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=90.73 E-value=0.87 Score=34.19 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=32.2
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy15636 64 LDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100 (101)
Q Consensus 64 ~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~ 100 (101)
...|.|+..|-..+.-+.|...|.=+|..|+++|++.
T Consensus 245 r~kPtMtlEeGl~ra~qEW~~~SnfdRmifyemaekF 281 (328)
T PF12881_consen 245 RLKPTMTLEEGLWRAVQEWQHTSNFDRMIFYEMAEKF 281 (328)
T ss_pred hcCCCccHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 4567788888888888999999999999999999874
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=86.38 E-value=1.4 Score=31.04 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=27.5
Q ss_pred CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 67 PKMHNSEISK-RLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 67 p~~~~~eisk-~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
|...+..+++ .+|..|+.+++++|+.|.+.-.+
T Consensus 66 p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~ 99 (211)
T PRK15117 66 PYVQVKYAGALVLGRYYKDATPAQREAYFAAFRE 99 (211)
T ss_pred ccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHH
Confidence 5567888876 68999999999999999986543
No 26
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=85.55 E-value=1.4 Score=30.77 Aligned_cols=32 Identities=22% Similarity=0.546 Sum_probs=27.0
Q ss_pred CCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 68 KMHNSEISK-RLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 68 ~~~~~eisk-~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
-..+..+++ .+|..|+.+++++|+.|.+...+
T Consensus 63 ~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~ 95 (198)
T TIGR03481 63 AFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRE 95 (198)
T ss_pred hCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHH
Confidence 457888877 68999999999999999987654
No 27
>KOG3223|consensus
Probab=82.71 E-value=2.4 Score=29.87 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=39.7
Q ss_pred CCCC-CCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q psy15636 42 GHIK-RPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEM 88 (101)
Q Consensus 42 ~~pk-RP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~ 88 (101)
.+|- |=.-||.-|-...-+.|+.++|++....+-.+|-..|..-++.
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPDN 209 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPDN 209 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCCC
Confidence 4554 4456699999999999999999999999999999999877653
No 28
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=82.11 E-value=1.5 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=16.2
Q ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHH
Q psy15636 70 HNSEISKRLG-AEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 70 ~~~eisk~~~-~~W~~ls~~eK~~y~~~A~ 98 (101)
++.||+--.+ +.|..|.+.+|..|.+.-.
T Consensus 2 tf~Dvav~fs~eEW~~L~~~Qk~ly~dvm~ 31 (41)
T PF01352_consen 2 TFEDVAVYFSQEEWELLDPAQKNLYRDVML 31 (41)
T ss_dssp -----TT---HHHHHTS-HHHHHHHHHHHH
T ss_pred eEEEEEEEcChhhcccccceecccchhHHH
Confidence 3455555555 5599999999999997643
No 29
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=78.08 E-value=8.5 Score=26.88 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy15636 50 AFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRP 92 (101)
Q Consensus 50 af~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~ 92 (101)
+.++|...+-..+...| ....+..++..-|+.||+.-++.
T Consensus 131 acLVFL~~~f~~F~~~~---deeK~v~Il~KTw~KMS~~g~~~ 170 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKH---DEEKIVDILRKTWRKMSERGHEA 170 (185)
T ss_pred HHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHCCHHHHHH
Confidence 57889998888888777 57778899999999999987764
No 30
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=74.48 E-value=2.3 Score=28.49 Aligned_cols=33 Identities=21% Similarity=0.580 Sum_probs=24.6
Q ss_pred CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHh
Q psy15636 67 PKMHNSEISKR-LGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 67 p~~~~~eisk~-~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
|-..+..+++. +|..|+.+++++|+.|.+...+
T Consensus 36 ~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~ 69 (170)
T PF05494_consen 36 PYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQ 69 (170)
T ss_dssp GGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHH
Confidence 45667777764 6789999999999999987653
No 31
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=71.50 E-value=9.5 Score=20.82 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy15636 69 MHNSEISKRLGAEWKLLTEMEKRPFIDEA 97 (101)
Q Consensus 69 ~~~~eisk~~~~~W~~ls~~eK~~y~~~A 97 (101)
.+..||.. |+.|++++|....+..
T Consensus 22 RT~dEI~~-----W~~~s~~er~~i~~~l 45 (51)
T PF06945_consen 22 RTLDEIRD-----WKSMSDDERRAILARL 45 (51)
T ss_pred CcHHHHHH-----HhhCCHHHHHHHHHHH
Confidence 35667765 9999988887766543
No 32
>PRK10236 hypothetical protein; Provisional
Probab=68.75 E-value=7 Score=28.33 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 74 ISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 74 isk~~~~~W~~ls~~eK~~y~~~ 96 (101)
+.+.+++.|+.|+++|++.+.+.
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~ 140 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHA 140 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHH
Confidence 68899999999999999988754
No 33
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=67.71 E-value=13 Score=23.38 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q psy15636 76 KRLGAEWKLLTEMEKRPFIDEA 97 (101)
Q Consensus 76 k~~~~~W~~ls~~eK~~y~~~A 97 (101)
.-+...|..|+++.|..+.+.|
T Consensus 14 ~pl~~~W~~l~~~qr~k~l~~a 35 (107)
T PF11304_consen 14 APLAERWNSLPPEQRRKWLQIA 35 (107)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444444444444444444
No 34
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=66.78 E-value=4.6 Score=24.69 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=13.3
Q ss_pred HhcCCHHHHHHHHHH
Q psy15636 82 WKLLTEMEKRPFIDE 96 (101)
Q Consensus 82 W~~ls~~eK~~y~~~ 96 (101)
|+.||+|||+.|.+.
T Consensus 26 yntms~eEk~~~D~~ 40 (97)
T PF12650_consen 26 YNTMSKEEKEKYDKK 40 (97)
T ss_pred cccCCHHHHHHhhHH
Confidence 899999999999754
No 35
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=63.45 E-value=35 Score=21.47 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=21.2
Q ss_pred HHHhhCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHH
Q psy15636 61 KMALDNPKMHNSEISKRLG--AEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 61 ~~~~~~p~~~~~eisk~~~--~~W~~ls~~eK~~y~~~A~ 98 (101)
.+...++.++..+-.+... ..|..|++++|..-.+.+.
T Consensus 33 ~~a~r~~~mspeqq~r~~~rm~~W~~LspeqR~~~R~~~~ 72 (107)
T PF11304_consen 33 QIAERWPSMSPEQQQRLRERMRRWAALSPEQRQQARENYQ 72 (107)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445556666555333332 4677777777766555443
No 36
>KOG0713|consensus
Probab=62.82 E-value=22 Score=27.12 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
+.+|....+-||+.+ ..+-.+.|+..|..|++++|+.-++.
T Consensus 35 kAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~ 80 (336)
T KOG0713|consen 35 KAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDT 80 (336)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 445555566777643 77888999999999997777655543
No 37
>PRK14296 chaperone protein DnaJ; Provisional
Probab=62.47 E-value=18 Score=27.56 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...++-||+.+ ..+-.++|.+.+..|++++|+.-++
T Consensus 23 ~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD 66 (372)
T PRK14296 23 QAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYD 66 (372)
T ss_pred HHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhh
Confidence 345555666788754 5678889999999999777665444
No 38
>PRK14283 chaperone protein DnaJ; Provisional
Probab=61.00 E-value=24 Score=26.91 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 55 SRGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
.+.+|...++-||+.+ ..+..+.+.+.|..|++.+|+.-++.
T Consensus 23 k~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 23 KKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 3456666777788864 56788999999999998876655543
No 39
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=60.56 E-value=32 Score=20.11 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q psy15636 49 NAFMVWSRGQRRKMALDNPKMHNSEISKRLGAE 81 (101)
Q Consensus 49 saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~ 81 (101)
+.|.-|-+...+.++...|+.+..+|..++.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~at~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDATPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 568888888899999999999999998887765
No 40
>PRK14291 chaperone protein DnaJ; Provisional
Probab=59.25 E-value=24 Score=27.01 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.+ ..+..+.+.+.|..|++.+|+.-++
T Consensus 22 ~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD 65 (382)
T PRK14291 22 KAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65 (382)
T ss_pred HHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 455666667788764 4678899999999999777654444
No 41
>PRK14279 chaperone protein DnaJ; Provisional
Probab=57.55 E-value=24 Score=27.09 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
+.+|...+.-||+.+ ..+..+.|.+.|..|++++|+.-++.
T Consensus 28 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 28 KAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred HHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 456666777788764 45788899999999997776654443
No 42
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=56.80 E-value=29 Score=27.06 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 55 SRGQRRKMALDNPKMH-NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~-~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
.+.+|...++-||+.+ ..+..+.|.+.+..|++++|+..++.
T Consensus 46 KkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 46 KKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 4667777778899875 35788999999999997776655543
No 43
>PRK14299 chaperone protein DnaJ; Provisional
Probab=55.33 E-value=33 Score=25.19 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.. ..+..+.+.+.|..|++.+|+.-++
T Consensus 23 ~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD 66 (291)
T PRK14299 23 KAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66 (291)
T ss_pred HHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 455666666788764 5578889999999998766554433
No 44
>PRK14285 chaperone protein DnaJ; Provisional
Probab=54.61 E-value=23 Score=26.90 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.. ..+..+++.+.|..|++++|+.-++
T Consensus 22 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd 66 (365)
T PRK14285 22 KAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYD 66 (365)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHH
Confidence 456666777788764 3467899999999999766554433
No 45
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=54.20 E-value=33 Score=21.98 Aligned_cols=29 Identities=28% Similarity=0.126 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 71 NSEISKRLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 71 ~~eisk~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
...+++.+++.++.|+.|-|+.|.++...
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~ 73 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLL 73 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45577888999999999999999998764
No 46
>PRK14280 chaperone protein DnaJ; Provisional
Probab=54.01 E-value=35 Score=26.05 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.+ ..+..++|.+.|..|++.+|+.-++
T Consensus 23 ~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD 66 (376)
T PRK14280 23 KAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYD 66 (376)
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHH
Confidence 455555666677754 5688899999999999776554444
No 47
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=52.96 E-value=47 Score=24.55 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...++-||+.. ..+..+.+.+.|..|++.+|+.-++
T Consensus 23 ~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD 66 (306)
T PRK10266 23 TAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66 (306)
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455666667788754 6778899999999998666554443
No 48
>PRK14295 chaperone protein DnaJ; Provisional
Probab=52.64 E-value=38 Score=26.03 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=29.9
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
+.+|...+.-||+.. ..+..+.|.+.|..|++.+|+..++.
T Consensus 28 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 28 KAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred HHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 455666666788764 45788899999999987776655554
No 49
>PRK14287 chaperone protein DnaJ; Provisional
Probab=52.31 E-value=40 Score=25.67 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|+.-++.
T Consensus 23 ~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 23 KAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred HHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 445555666788754 45678899999999987776655443
No 50
>PRK14281 chaperone protein DnaJ; Provisional
Probab=50.89 E-value=31 Score=26.52 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 55 SRGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.+|+.-++
T Consensus 21 kkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD 66 (397)
T PRK14281 21 KKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYD 66 (397)
T ss_pred HHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 3556666777788764 3578899999999999777554444
No 51
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=50.68 E-value=21 Score=20.43 Aligned_cols=19 Identities=11% Similarity=0.433 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q psy15636 77 RLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 77 ~~~~~W~~ls~~eK~~y~~ 95 (101)
..+..|+.|++++|+.+.+
T Consensus 12 Qa~~ly~~l~~~er~~lv~ 30 (68)
T PF06628_consen 12 QARDLYRVLSDEERERLVE 30 (68)
T ss_dssp HHHHHHHHSSHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHH
Confidence 3567899999999988763
No 52
>PRK14288 chaperone protein DnaJ; Provisional
Probab=49.19 E-value=52 Score=25.04 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...++-||+.+ ..+..+.|.+.+..|++.+|+.-++
T Consensus 22 kayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD 66 (369)
T PRK14288 22 KSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYD 66 (369)
T ss_pred HHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 456666677788864 3467889999999999777554443
No 53
>PRK14294 chaperone protein DnaJ; Provisional
Probab=49.10 E-value=49 Score=25.13 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.. ..+..+.+.+.|..|++.+|+.-++
T Consensus 23 ~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD 67 (366)
T PRK14294 23 KSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYD 67 (366)
T ss_pred HHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 455666667788764 3578889999999998766554444
No 54
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=48.00 E-value=40 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 74 ISKRLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 74 isk~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
..+..-+++..|++|+|..|.+..++
T Consensus 119 ~~~~~~qmy~lLTPEQra~l~~~~e~ 144 (162)
T PRK12751 119 MAKVRNQMYNLLTPEQKEALNKKHQE 144 (162)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555677899999999999987653
No 55
>PRK14276 chaperone protein DnaJ; Provisional
Probab=47.65 E-value=45 Score=25.48 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|+.-++
T Consensus 23 ~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 66 (380)
T PRK14276 23 KAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66 (380)
T ss_pred HHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHh
Confidence 455555666677753 5678899999999998777654444
No 56
>PRK09897 hypothetical protein; Provisional
Probab=47.49 E-value=76 Score=25.56 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=24.8
Q ss_pred CCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 66 NPKMHNSE----ISKRLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 66 ~p~~~~~e----isk~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
..+...++ +...+...|+.|+.++|+.|.....+
T Consensus 344 ~~~~~w~~~i~~l~~~~~~iw~~l~~~d~~rf~~~l~~ 381 (534)
T PRK09897 344 KHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLAR 381 (534)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhH
Confidence 34455444 55567789999999999999876543
No 57
>PRK14298 chaperone protein DnaJ; Provisional
Probab=47.02 E-value=41 Score=25.74 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
+.+|...+.-||+.+ ..+..++|.+.|..|++.+|+.-++.
T Consensus 24 ~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (377)
T PRK14298 24 KAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDR 68 (377)
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence 445555666678764 45677899999999998776655443
No 58
>PRK14286 chaperone protein DnaJ; Provisional
Probab=46.76 E-value=57 Score=24.88 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHH-HHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKR-PFI 94 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~-~y~ 94 (101)
+.+|...+.-||+.+ ..+..+.+.+.+..|++.+|+ .|.
T Consensus 23 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 67 (372)
T PRK14286 23 SAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYD 67 (372)
T ss_pred HHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 456666677788764 357889999999999976655 444
No 59
>PRK14284 chaperone protein DnaJ; Provisional
Probab=46.20 E-value=51 Score=25.30 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
+.+|...+.-||+.+ ..+..+.+.+.|..|++.+|+.-++.
T Consensus 20 kayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 65 (391)
T PRK14284 20 KAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDR 65 (391)
T ss_pred HHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 456666777788765 35688999999999987766555443
No 60
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=45.27 E-value=24 Score=21.75 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.2
Q ss_pred HhcCCHHHHHHHHHHHHh
Q psy15636 82 WKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 82 W~~ls~~eK~~y~~~A~~ 99 (101)
|..|++++|+.+.+.+.+
T Consensus 61 y~~L~e~eK~~dr~~~~e 78 (94)
T PF02026_consen 61 YDELSEEEKEKDRDMVRE 78 (94)
T ss_dssp GGGS-HHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHhHHHHHH
Confidence 999999999999988764
No 61
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=42.49 E-value=15 Score=21.79 Aligned_cols=20 Identities=30% Similarity=0.675 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q psy15636 67 PKMHNSEISKRLGAEWKLLT 86 (101)
Q Consensus 67 p~~~~~eisk~~~~~W~~ls 86 (101)
+.+.+..|++.+|..|+.|.
T Consensus 3 ~~~~l~~ia~~lG~dW~~LA 22 (84)
T cd08317 3 ADIRLADISNLLGSDWPQLA 22 (84)
T ss_pred ccchHHHHHHHHhhHHHHHH
Confidence 56778899999999998765
No 62
>PRK14278 chaperone protein DnaJ; Provisional
Probab=42.32 E-value=55 Score=25.02 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.. ..+..+.+.+.|..|++.+|+.-++
T Consensus 22 ~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD 65 (378)
T PRK14278 22 RAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVD 65 (378)
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhh
Confidence 455666666778764 4567888999999998766554333
No 63
>KOG1610|consensus
Probab=41.84 E-value=51 Score=25.03 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhC-------CC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 53 VWSRGQRRKMALDN-------PK------MHNSEISKRLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 53 lf~~~~r~~~~~~~-------p~------~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
.|+...|.++..-. |+ .....+.+.+.+.|..++++.|+.|-+.+..
T Consensus 187 af~D~lR~EL~~fGV~VsiiePG~f~T~l~~~~~~~~~~~~~w~~l~~e~k~~YGedy~~ 246 (322)
T KOG1610|consen 187 AFSDSLRRELRPFGVKVSIIEPGFFKTNLANPEKLEKRMKEIWERLPQETKDEYGEDYFE 246 (322)
T ss_pred HHHHHHHHHHHhcCcEEEEeccCccccccCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 37777777765221 32 2347789999999999999999999876643
No 64
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=40.54 E-value=30 Score=20.26 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHH
Q psy15636 35 LGHHHSEGHIKRPMNAFMVWSRGQ 58 (101)
Q Consensus 35 ~~~~~~~~~pkRP~saf~lf~~~~ 58 (101)
..+..+++.|.-||.-||++.+..
T Consensus 23 ~dr~~K~GfpdepmrE~ml~l~~L 46 (75)
T PF15076_consen 23 QDRPRKPGFPDEPMREYMLHLQAL 46 (75)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHH
Confidence 445568899999999999997653
No 65
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=39.88 E-value=45 Score=23.67 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy15636 71 NSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100 (101)
Q Consensus 71 ~~eisk~~~~~W~~ls~~eK~~y~~~A~~~ 100 (101)
..+..+.+.+.+..|++++++...+.++++
T Consensus 12 ~~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L 41 (248)
T PF08367_consen 12 EEEEKEKLAAYKASLSEEEKEKIIEQTKEL 41 (248)
T ss_dssp HHHHHHHHHHHHHCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 346778899999999999999999888765
No 66
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.75 E-value=70 Score=24.76 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
+.+|...++-||+.+ ..|-.++|.+....|++.+|+.-+++
T Consensus 23 kAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~ 68 (371)
T COG0484 23 KAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQ 68 (371)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhc
Confidence 345555556677654 56788999999999998887765553
No 67
>PRK14277 chaperone protein DnaJ; Provisional
Probab=37.89 E-value=84 Score=24.07 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|+.-++
T Consensus 24 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD 68 (386)
T PRK14277 24 KAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYD 68 (386)
T ss_pred HHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455666667788764 3468889999999999766554444
No 68
>PF15581 Imm35: Immunity protein 35
Probab=37.75 E-value=95 Score=19.19 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH
Q psy15636 70 HNSEISKRLGAEWKLLTEMEKRP 92 (101)
Q Consensus 70 ~~~eisk~~~~~W~~ls~~eK~~ 92 (101)
+..-+...+.+.|+.|++++=..
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~~ 53 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVLY 53 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Confidence 35568889999999999876443
No 69
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=37.30 E-value=71 Score=17.29 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCC-HHHHHHH
Q psy15636 55 SRGQRRKMALDNPKMH------NSEISKRLGAEWKLLT-EMEKRPF 93 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~------~~eisk~~~~~W~~ls-~~eK~~y 93 (101)
.+.++..++.-||+.. ..+....|.+.|..|+ ++.|+.|
T Consensus 18 k~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~Y 63 (64)
T PF00226_consen 18 KKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRY 63 (64)
T ss_dssp HHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhc
Confidence 3455666777788752 3478999999999996 4445555
No 70
>KOG0715|consensus
Probab=37.17 E-value=89 Score=23.10 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=30.0
Q ss_pred HHHHHHHHhhCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKM----HNSEISKRLGAEWKLLTEMEKRPFIDEA 97 (101)
Q Consensus 56 ~~~r~~~~~~~p~~----~~~eisk~~~~~W~~ls~~eK~~y~~~A 97 (101)
..++...+.-||+. ...+..+.|.+.+..|++++|..-++..
T Consensus 62 ~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~ 107 (288)
T KOG0715|consen 62 SAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVY 107 (288)
T ss_pred HHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 34445566667765 4778899999999999977776655543
No 71
>PRK10767 chaperone protein DnaJ; Provisional
Probab=36.68 E-value=89 Score=23.70 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.. ..+..+.+.+.|..|++.+++.-++
T Consensus 23 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd 67 (371)
T PRK10767 23 KAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYD 67 (371)
T ss_pred HHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhh
Confidence 455666667788764 3467789999999998766544433
No 72
>PF13945 NST1: Salt tolerance down-regulator
Probab=36.52 E-value=60 Score=22.75 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy15636 71 NSEISKRLGAEWKLLTEMEKRPFIDEA 97 (101)
Q Consensus 71 ~~eisk~~~~~W~~ls~~eK~~y~~~A 97 (101)
..+....|-+.|-.|+++||+-.+..-
T Consensus 100 s~eEre~LkeFW~SL~eeERr~LVkIE 126 (190)
T PF13945_consen 100 SQEEREKLKEFWESLSEEERRSLVKIE 126 (190)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence 445667889999999999999877543
No 73
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=35.99 E-value=42 Score=17.30 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=16.5
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhcC
Q psy15636 62 MALDNPKMHNSEISKRLGAEWKLL 85 (101)
Q Consensus 62 ~~~~~p~~~~~eisk~~~~~W~~l 85 (101)
+..++|.++..+|++.++--+..+
T Consensus 11 ~l~~~~~~t~~ela~~~~is~~tv 34 (48)
T PF13412_consen 11 YLRENPRITQKELAEKLGISRSTV 34 (48)
T ss_dssp HHHHCTTS-HHHHHHHHTS-HHHH
T ss_pred HHHHcCCCCHHHHHHHhCCCHHHH
Confidence 345689999999999887555443
No 74
>PRK14292 chaperone protein DnaJ; Provisional
Probab=35.25 E-value=86 Score=23.79 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.. ..+..+.|.+.+..|++.+++..++
T Consensus 21 ~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd 64 (371)
T PRK14292 21 SAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64 (371)
T ss_pred HHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHh
Confidence 455666677788765 5678889999999998666554444
No 75
>PRK14290 chaperone protein DnaJ; Provisional
Probab=34.93 E-value=65 Score=24.44 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=28.1
Q ss_pred HHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH------NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~------~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...++-||+.+ ..+..+.+.+.|..|++.+++.-++
T Consensus 22 ~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd 67 (365)
T PRK14290 22 KAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYD 67 (365)
T ss_pred HHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhc
Confidence 455666667788764 3467788999999998777554433
No 76
>PRK14297 chaperone protein DnaJ; Provisional
Probab=34.50 E-value=67 Score=24.51 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.+ ..+..+.|.+.|..|++.+|+.-++
T Consensus 23 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD 67 (380)
T PRK14297 23 KAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYD 67 (380)
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchh
Confidence 455666667788764 3468899999999998776554433
No 77
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=34.01 E-value=1e+02 Score=18.18 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhc
Q psy15636 51 FMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLT----EMEKRPFIDEAKRL 100 (101)
Q Consensus 51 f~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls----~~eK~~y~~~A~~~ 100 (101)
|-||.+.....+....|+.- .-+.+.--+.|+.+. ++-++.|.+..+++
T Consensus 30 YalyKQAt~Gd~~~~~P~~~-d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~ 82 (87)
T PF00887_consen 30 YALYKQATHGDCDTPRPGFF-DIEGRAKWDAWKALKGMSKEEAMREYIELVEEL 82 (87)
T ss_dssp HHHHHHHHTSS--S-CTTTT-CHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCcch-hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 66666666655555555432 333444457797775 77788898887653
No 78
>PRK14301 chaperone protein DnaJ; Provisional
Probab=33.57 E-value=83 Score=23.99 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.+ ..+..+.+.+.|..|++.+|+.-++
T Consensus 23 ~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD 67 (373)
T PRK14301 23 KAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYD 67 (373)
T ss_pred HHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhh
Confidence 456666677788764 3457789999999999777554443
No 79
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=32.47 E-value=54 Score=19.56 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH
Q psy15636 70 HNSEISKRLGAEWKLLTEMEKRPF 93 (101)
Q Consensus 70 ~~~eisk~~~~~W~~ls~~eK~~y 93 (101)
+..||.. |..|+++||.--
T Consensus 28 t~~Ei~~-----W~~msd~Er~aV 46 (74)
T COG3313 28 TRDEIFN-----WSSMSDDERRAV 46 (74)
T ss_pred cHHHHHH-----HhhCCHHHHHHH
Confidence 4455655 999998888643
No 80
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=32.35 E-value=42 Score=17.87 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=22.7
Q ss_pred HHHHHHHHhhCCCCCH------HHHHHHHHHHHhcCCHH
Q psy15636 56 RGQRRKMALDNPKMHN------SEISKRLGAEWKLLTEM 88 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~~------~eisk~~~~~W~~ls~~ 88 (101)
+.++..++.-||+... .+....|.+.|..|.+.
T Consensus 20 ~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 20 KAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred HHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 4455556667887654 46778888888887654
No 81
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=32.19 E-value=1e+02 Score=23.21 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHH-HHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKR-PFI 94 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~-~y~ 94 (101)
+.+|...+.-||+.. ..+..+.|.+.|..|++..|+ .|.
T Consensus 19 ~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd 62 (354)
T TIGR02349 19 KAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62 (354)
T ss_pred HHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhh
Confidence 455555666788764 456888999999999876654 443
No 82
>PF12472 DUF3693: Phage related protein; InterPro: IPR021096 This entry is represented by Vibrio phage VSK, Orf152. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.28 E-value=53 Score=18.44 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=13.8
Q ss_pred hcCCHHHHHHHHHHHHhc
Q psy15636 83 KLLTEMEKRPFIDEAKRL 100 (101)
Q Consensus 83 ~~ls~~eK~~y~~~A~~~ 100 (101)
+.-++++|+.|...++++
T Consensus 8 ra~~~~~k~~W~~i~kkl 25 (60)
T PF12472_consen 8 RAESPEEKAAWASIAKKL 25 (60)
T ss_pred ccCChHHHHHHHHHHHHH
Confidence 345788899998888774
No 83
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=31.00 E-value=95 Score=18.93 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 70 HNSEISKRLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 70 ~~~eisk~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
...+|+. --+.-..|+++||..|.+...+
T Consensus 51 ~~~eVtq-~p~LV~qMT~~EKEaYi~v~Q~ 79 (86)
T PF11521_consen 51 PYSEVTQ-RPELVAQMTPEEKEAYIQVGQE 79 (86)
T ss_dssp EHHHHHH--HHHHHHS-HHHHHHHHHHHHH
T ss_pred ehhhcCc-chHHHHHcCHHHHHHHHHHHHH
Confidence 3566661 1233368999999999988765
No 84
>KOG0493|consensus
Probab=30.76 E-value=1.3e+02 Score=22.49 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=9.4
Q ss_pred CCCCCCCCcHHHH
Q psy15636 41 EGHIKRPMNAFMV 53 (101)
Q Consensus 41 ~~~pkRP~saf~l 53 (101)
.+--|||.+||.-
T Consensus 243 ~~eeKRPRTAFta 255 (342)
T KOG0493|consen 243 SKEEKRPRTAFTA 255 (342)
T ss_pred cchhcCccccccH
Confidence 3447899999753
No 85
>PRK10455 periplasmic protein; Reviewed
Probab=29.97 E-value=1.3e+02 Score=20.39 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 74 ISKRLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 74 isk~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
..+.-.+++..|++|.|+.|.+..++
T Consensus 119 ~~~~~~qiy~vLTPEQr~q~~~~~ek 144 (161)
T PRK10455 119 HMETQNKIYNVLTPEQKKQFNANFEK 144 (161)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555678899999999999987553
No 86
>PHA03102 Small T antigen; Reviewed
Probab=28.42 E-value=1.2e+02 Score=20.47 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=27.0
Q ss_pred HHHHHHHHhhCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-NSEISKRLGAEWKLLTEMEKR 91 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-~~eisk~~~~~W~~ls~~eK~ 91 (101)
+.+|...+.-||+.. ..+..+.+.+.|..|++..+.
T Consensus 26 kAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r 62 (153)
T PHA03102 26 KAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKS 62 (153)
T ss_pred HHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHh
Confidence 456666777788764 457889999999999876554
No 87
>PRK14293 chaperone protein DnaJ; Provisional
Probab=28.39 E-value=1.4e+02 Score=22.77 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHH-HHHHHH
Q psy15636 55 SRGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEME-KRPFID 95 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~e-K~~y~~ 95 (101)
.+.+|...+.-||+.+ ..+..+.+.+.|..|++++ |..|..
T Consensus 21 k~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 21 KRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 3455655666677653 6678889999999998666 555543
No 88
>PRK14282 chaperone protein DnaJ; Provisional
Probab=27.98 E-value=1.2e+02 Score=22.97 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH------NSEISKRLGAEWKLLTEMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~------~~eisk~~~~~W~~ls~~eK~~y~~ 95 (101)
+.+|...+.-||+.+ ..+..+.+.+.+..|++.+|+.-++
T Consensus 23 ~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD 68 (369)
T PRK14282 23 RAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYD 68 (369)
T ss_pred HHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHh
Confidence 456666667788764 2467888999999998776654443
No 89
>PRK14300 chaperone protein DnaJ; Provisional
Probab=27.77 E-value=1.6e+02 Score=22.43 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
+.+|...+.-||+.+ ..+..++|.+.+..|++++++.-++.
T Consensus 22 ~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 22 KAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred HHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 455666667788754 55688999999999987775544443
No 90
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=27.19 E-value=1.4e+02 Score=20.60 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 73 EISKRLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 73 eisk~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
+..+.--++...|++|.|..|.+..++
T Consensus 112 em~k~~nqmy~lLTPEQKaq~~~~~~~ 138 (166)
T PRK10363 112 EMAKVRNQMYRLLTPEQQAVLNEKHQQ 138 (166)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666788999999999999987653
No 91
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=26.38 E-value=1.4e+02 Score=20.39 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q psy15636 76 KRLGAEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 76 k~~~~~W~~ls~~eK~~y~~~A~ 98 (101)
+..-+.+..|++++|..|.+.-+
T Consensus 128 ~~~~~~~~vLTpEQRak~~e~~~ 150 (170)
T PRK12750 128 EKRHQMLSILTPEQKAKFQELQQ 150 (170)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556799999999999998654
No 92
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.90 E-value=1.6e+02 Score=18.12 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy15636 67 PKMHNSEISKRLGAEWKLLTEMEKRPFI 94 (101)
Q Consensus 67 p~~~~~eisk~~~~~W~~ls~~eK~~y~ 94 (101)
|+.....+.+..-.+-+.|+++|.+.|+
T Consensus 5 ~~~~~~~~~k~~~~rk~~Ls~eE~EL~E 32 (88)
T PF12926_consen 5 PGSPTAQVYKYSLRRKKVLSAEEVELYE 32 (88)
T ss_pred CCCChHHHHHHHHHHHhccCHHHHHHHH
Confidence 4555667777777888899999998887
No 93
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.03 E-value=63 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q psy15636 75 SKRLGAEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 75 sk~~~~~W~~ls~~eK~~y~~~A~ 98 (101)
...+|.-|+.+++++++.|.+...
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~ 100 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFR 100 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHH
Confidence 345789999999999999987654
No 94
>KOG1827|consensus
Probab=25.02 E-value=7.2 Score=32.05 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHH
Q psy15636 47 PMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEK 90 (101)
Q Consensus 47 P~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK 90 (101)
-+.+|++|..+.+..+-.++|+..++++..+.|..|..|+..-|
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~v~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPTVGFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred CCccccccccccCceeeeeCCCcccceeEEeecCCcccCccccc
Confidence 56889999999999999999999999999999999999994444
No 95
>COG2938 Uncharacterized conserved protein [Function unknown]
Probab=24.44 E-value=1.4e+02 Score=18.56 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q psy15636 74 ISKRLGAEWKLLTEMEKRPFIDEA 97 (101)
Q Consensus 74 isk~~~~~W~~ls~~eK~~y~~~A 97 (101)
|+.-+...|..|+++++..|...-
T Consensus 33 l~~Fae~~~~~lsd~el~~f~~LL 56 (94)
T COG2938 33 LGPFAEKEFDSLSDEELDEFERLL 56 (94)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHH
Confidence 456667889999999999998754
No 96
>PF11334 DUF3136: Protein of unknown function (DUF3136); InterPro: IPR021483 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=24.16 E-value=1.3e+02 Score=17.40 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q psy15636 50 AFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLL 85 (101)
Q Consensus 50 af~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~l 85 (101)
.|-+||+..|--|.. |.+..+|-+ .-.|..|
T Consensus 9 ~y~~YckALr~Lv~~---G~~~~~i~r--TvCW~rL 39 (64)
T PF11334_consen 9 GYPLYCKALRRLVAD---GRSEEEIRR--TVCWDRL 39 (64)
T ss_pred CchHHHHHHHHHHHc---CCCHHHHHH--HHHHHHH
Confidence 378999999988874 777888876 3467654
No 97
>PRK14289 chaperone protein DnaJ; Provisional
Probab=23.69 E-value=2.2e+02 Score=21.72 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHHHH-HHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEKRP-FID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK~~-y~~ 95 (101)
+.+|...+.-||+.+ ..+..+.+.+.|..|++++|+. |..
T Consensus 24 ~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~ 69 (386)
T PRK14289 24 KAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQ 69 (386)
T ss_pred HHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345555566688764 4567889999999999887554 654
No 98
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=23.48 E-value=68 Score=20.65 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy15636 74 ISKRLGAEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 74 isk~~~~~W~~ls~~eK~~y~~~A~ 98 (101)
.++.+-+.|.+-++-.|-.|++.|-
T Consensus 18 Ya~~lv~~W~E~TdP~K~VfEDlaI 42 (112)
T PF07757_consen 18 YARWLVDNWPESTDPQKHVFEDLAI 42 (112)
T ss_pred HHHHHHHhCcccCCchhhHHHHHHH
Confidence 3456777899999999999998873
No 99
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=23.14 E-value=1.7e+02 Score=17.03 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy15636 71 NSEISKRLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 71 ~~eisk~~~~~W~~ls~~eK~~y~~~ 96 (101)
...........+..|+++.|..|.++
T Consensus 74 ~~~~~~~~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 74 MEERAKAQHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 33456677788999999999998764
No 100
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=23.12 E-value=68 Score=17.15 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=12.3
Q ss_pred HHhcC-CHHHHHHHHH
Q psy15636 81 EWKLL-TEMEKRPFID 95 (101)
Q Consensus 81 ~W~~l-s~~eK~~y~~ 95 (101)
.|..| +.++|..|..
T Consensus 41 eW~~l~~~~~k~~YL~ 56 (58)
T PF08373_consen 41 EWNKLKSREEKIEYLK 56 (58)
T ss_pred HHHhcCCHHHHHHHHh
Confidence 69999 8999988864
No 101
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=21.85 E-value=1.3e+02 Score=15.41 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCC
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLT 86 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls 86 (101)
+.++..++.-||+.. ..+....+.+.|..|+
T Consensus 19 ~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 19 KAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 455666777788765 3466777777777665
No 102
>PF07836 DmpG_comm: DmpG-like communication domain; InterPro: IPR012425 This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C terminus of the N-terminal TIM barrel domain []. The communication domain is thought to play an important role in the heterodimerisation of the enzyme []. Members of this entry heterodimerise with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase [].; GO: 0016833 oxo-acid-lyase activity, 0019439 aromatic compound catabolic process; PDB: 1NVM_E.
Probab=20.90 E-value=1.7e+02 Score=17.04 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy15636 49 NAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEW 82 (101)
Q Consensus 49 saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W 82 (101)
|+|+++....-.++ +....+|-.++|++=
T Consensus 19 SsFl~ha~raa~~y-----gVd~r~il~elgrR~ 47 (66)
T PF07836_consen 19 SSFLLHAERAAERY-----GVDPRDILVELGRRK 47 (66)
T ss_dssp TTHHHHHHHHHHHH-----T--HHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHh-----CcCHHHHHHHHhccc
Confidence 45777766655555 788888888888753
No 103
>PLN02150 terpene synthase/cyclase family protein
Probab=20.74 E-value=59 Score=20.00 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHhcCCHH
Q psy15636 70 HNSEISKRLGAEWKLLTEM 88 (101)
Q Consensus 70 ~~~eisk~~~~~W~~ls~~ 88 (101)
...+|..++.+.|+.|..+
T Consensus 24 A~~~i~~li~~~WK~iN~e 42 (96)
T PLN02150 24 AVSELKKMIRDNYKIVMEE 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567899999999987754
No 104
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=20.58 E-value=1.9e+02 Score=16.75 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy15636 73 EISKRLGAEWKLLTEMEKRPFIDEA 97 (101)
Q Consensus 73 eisk~~~~~W~~ls~~eK~~y~~~A 97 (101)
.+--.....|+.+++++|+...+.-
T Consensus 37 GLGVlFE~~W~~~~~~ek~~m~~~l 61 (65)
T PF14098_consen 37 GLGVLFEVIWKNSDESEKQEMVNTL 61 (65)
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666789999999999887654
No 105
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=20.51 E-value=69 Score=21.07 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=12.2
Q ss_pred HHhcCCHHHHHHHHHH
Q psy15636 81 EWKLLTEMEKRPFIDE 96 (101)
Q Consensus 81 ~W~~ls~~eK~~y~~~ 96 (101)
-|+.||.+||+-....
T Consensus 43 dW~~LT~~EKkAlY~i 58 (136)
T cd00922 43 DWKQLTLEEKKALYRI 58 (136)
T ss_pred CHhhCCHHHHhhHhhh
Confidence 5999998888765543
No 106
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=20.41 E-value=62 Score=18.28 Aligned_cols=15 Identities=40% Similarity=0.984 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhcCC
Q psy15636 72 SEISKRLGAEWKLLT 86 (101)
Q Consensus 72 ~eisk~~~~~W~~ls 86 (101)
..|++.+|..|+.|-
T Consensus 3 ~~ia~~lg~~W~~la 17 (79)
T cd01670 3 DKLAKKLGKDWKKLA 17 (79)
T ss_pred HHHHHHHhhHHHHHH
Confidence 467788888887764
No 107
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=20.25 E-value=1.2e+02 Score=21.33 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q psy15636 79 GAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 79 ~~~W~~ls~~eK~~y~~~A~~ 99 (101)
.+.|..|+++.|+...+.+.+
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~ 233 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKE 233 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 567999999999988876654
No 108
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=20.19 E-value=75 Score=19.26 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=14.1
Q ss_pred CCCCCCcHHHHHHHHHH
Q psy15636 43 HIKRPMNAFMVWSRGQR 59 (101)
Q Consensus 43 ~pkRP~saf~lf~~~~r 59 (101)
-+.|+..||..|+..-+
T Consensus 59 L~~rG~~Af~~F~~aL~ 75 (86)
T cd08785 59 LATRGKRGYVAFLESLE 75 (86)
T ss_pred HHhcCcchHHHHHHHHH
Confidence 47789999999987764
No 109
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=20.14 E-value=2.5e+02 Score=19.42 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy15636 49 NAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPF 93 (101)
Q Consensus 49 saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y 93 (101)
.-|+.|++.-|+.-.. .-..-++..|..+++-|+..-
T Consensus 4 ~~~~~~~~~~~~~~~~--------~~~~~~~~~W~~ls~REq~ll 40 (178)
T PRK09731 4 DKFIHYFQQWRERQLS--------RGEHWLAQHLAGRSPREKGML 40 (178)
T ss_pred HHHHHHHHHHHHHHhc--------chhhHHHHHHccCCHHHHHHH
Confidence 3588888887764321 123468889999999888753
No 110
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.02 E-value=2.5e+02 Score=17.83 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=15.5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q psy15636 77 RLGAEWKLLTEMEKRPFIDE 96 (101)
Q Consensus 77 ~~~~~W~~ls~~eK~~y~~~ 96 (101)
.+.++..+|+++|.+.-.+.
T Consensus 82 ~lqkRle~l~~eE~~~L~~e 101 (104)
T PF11460_consen 82 ELQKRLEELSPEELEALQAE 101 (104)
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 45668899999998876654
Done!