Query psy15636
Match_columns 101
No_of_seqs 131 out of 1040
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 17:46:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgf_A Upstream binding factor 99.9 6.2E-24 2.1E-28 130.7 9.9 68 34-101 11-78 (90)
2 2e6o_A HMG box-containing prot 99.9 6.8E-24 2.3E-28 129.7 8.9 66 36-101 10-75 (87)
3 2eqz_A High mobility group pro 99.9 2.4E-23 8.3E-28 126.9 9.4 70 32-101 4-75 (86)
4 2co9_A Thymus high mobility gr 99.9 3.9E-23 1.3E-27 129.8 9.3 68 34-101 8-75 (102)
5 1hry_A Human SRY; DNA, DNA-bin 99.9 2.5E-23 8.7E-28 123.9 6.9 62 40-101 1-62 (76)
6 2d7l_A WD repeat and HMG-box D 99.9 5.5E-23 1.9E-27 124.5 8.0 61 40-100 2-63 (81)
7 1hme_A High mobility group pro 99.9 2.6E-23 8.9E-28 124.2 6.1 64 38-101 1-64 (77)
8 4a3n_A Transcription factor SO 99.9 4.7E-23 1.6E-27 121.1 7.0 60 42-101 1-60 (71)
9 1k99_A Upstream binding factor 99.9 3.4E-23 1.2E-27 129.5 6.6 66 36-101 3-68 (99)
10 2crj_A SWI/SNF-related matrix- 99.9 6.6E-23 2.2E-27 126.5 7.7 64 38-101 2-65 (92)
11 2cs1_A PMS1 protein homolog 1; 99.9 1.9E-22 6.5E-27 124.4 9.2 63 39-101 3-65 (92)
12 3u2b_C Transcription factor SO 99.9 9.2E-23 3.1E-27 122.2 7.5 60 42-101 1-60 (79)
13 4euw_A Transcription factor SO 99.9 1.2E-22 4E-27 128.5 8.1 72 30-101 16-87 (106)
14 1wz6_A HMG-box transcription f 99.9 1.4E-22 4.9E-27 122.4 7.6 63 39-101 3-65 (82)
15 1j46_A SRY, sex-determining re 99.9 2E-22 6.8E-27 122.6 8.3 61 41-101 2-62 (85)
16 3f27_D Transcription factor SO 99.9 1.5E-22 5E-27 122.4 7.4 62 40-101 3-64 (83)
17 2lef_A LEF-1 HMG, protein (lym 99.9 3.1E-22 1E-26 122.0 8.1 60 42-101 1-60 (86)
18 1gt0_D Transcription factor SO 99.9 3.1E-22 1.1E-26 120.3 7.9 60 42-101 1-60 (80)
19 1i11_A Transcription factor SO 99.9 1.8E-22 6E-27 121.7 6.8 61 41-101 2-62 (81)
20 1aab_A High mobility group pro 99.9 1.3E-22 4.5E-27 122.8 4.8 64 38-101 2-67 (83)
21 1cg7_A Protein (NON histone pr 99.9 1.3E-22 4.5E-27 125.4 4.6 68 34-101 11-78 (93)
22 1wxl_A Single-strand recogniti 99.9 8.3E-22 2.8E-26 116.7 7.1 59 41-101 1-59 (73)
23 1ckt_A High mobility group 1 p 99.9 5.5E-22 1.9E-26 116.6 5.9 59 43-101 1-61 (71)
24 3nm9_A HMG-D, high mobility gr 99.9 1E-21 3.5E-26 116.3 6.6 58 42-101 2-59 (73)
25 2lhj_A High mobility group pro 99.8 1.4E-22 4.6E-27 126.1 -0.1 68 34-101 13-82 (97)
26 2cto_A Novel protein; high mob 99.8 4.9E-21 1.7E-25 118.7 5.0 63 37-101 4-69 (93)
27 3fgh_A Transcription factor A, 99.8 1.4E-20 4.8E-25 109.6 5.9 56 42-101 1-56 (67)
28 2yrq_A High mobility group pro 99.8 4.8E-20 1.6E-24 124.7 9.1 69 33-101 5-75 (173)
29 1v64_A Nucleolar transcription 99.8 3.8E-20 1.3E-24 117.3 7.6 65 33-101 6-71 (108)
30 2gzk_A Sex-determining region 99.8 4.2E-20 1.4E-24 123.4 7.9 66 36-101 81-146 (159)
31 2yuk_A Myeloid/lymphoid or mix 99.8 1E-21 3.4E-26 121.0 -0.2 61 37-101 16-78 (90)
32 2yrq_A High mobility group pro 99.8 7.3E-20 2.5E-24 123.8 7.8 66 36-101 94-159 (173)
33 1l8y_A Upstream binding factor 99.8 7.5E-20 2.6E-24 112.7 6.8 59 42-101 3-61 (91)
34 3tmm_A Transcription factor A, 99.8 4.5E-20 1.5E-24 130.8 5.4 65 37-101 35-99 (238)
35 1v63_A Nucleolar transcription 99.8 2.9E-19 1E-23 112.0 7.5 62 38-101 3-64 (101)
36 3tq6_A Transcription factor A, 99.8 3.5E-19 1.2E-23 124.5 5.3 63 39-101 5-67 (214)
37 2gzk_A Sex-determining region 99.7 5.7E-18 1.9E-22 113.0 8.0 62 40-101 1-62 (159)
38 3tq6_A Transcription factor A, 99.7 2.2E-17 7.5E-22 115.4 2.1 59 39-101 110-168 (214)
39 3tmm_A Transcription factor A, 99.6 3.5E-17 1.2E-21 115.9 0.7 59 39-101 142-200 (238)
40 2yua_A Williams-beuren syndrom 74.2 9.6 0.00033 22.4 5.3 40 55-94 35-80 (99)
41 2qgu_A Probable signal peptide 73.2 2.2 7.5E-05 29.0 2.5 33 67-99 70-103 (211)
42 2cug_A Mkiaa0962 protein; DNAJ 68.9 14 0.00047 21.1 7.4 52 44-95 13-80 (88)
43 2o37_A Protein SIS1; HSP40, J- 65.1 12 0.00041 21.6 4.3 40 55-94 26-68 (92)
44 1hdj_A Human HSP40, HDJ-1; mol 63.0 17 0.00058 20.0 5.3 39 56-94 22-65 (77)
45 2dn9_A DNAJ homolog subfamily 59.2 13 0.00043 20.7 3.6 40 55-94 25-70 (79)
46 2ctp_A DNAJ homolog subfamily 58.7 18 0.00063 20.0 4.2 40 55-94 25-69 (78)
47 2och_A Hypothetical protein DN 58.4 20 0.0007 19.5 4.4 39 56-94 27-68 (73)
48 2ctw_A DNAJ homolog subfamily 58.1 27 0.00092 20.8 7.5 48 47-94 16-80 (109)
49 2ctq_A DNAJ homolog subfamily 55.2 16 0.00055 21.9 3.8 41 55-95 38-84 (112)
50 2dmx_A DNAJ homolog subfamily 49.0 24 0.00083 20.1 3.7 39 56-94 28-73 (92)
51 2lgw_A DNAJ homolog subfamily 48.3 30 0.001 20.3 4.1 40 56-95 21-67 (99)
52 2ctr_A DNAJ homolog subfamily 47.4 22 0.00074 20.2 3.3 40 55-94 25-69 (88)
53 2ej7_A HCG3 gene; HCG3 protein 38.6 22 0.00076 19.8 2.4 40 55-94 27-73 (82)
54 2ys8_A RAB-related GTP-binding 35.7 37 0.0013 19.4 3.1 35 56-90 46-84 (90)
55 3o39_A Periplasmic protein rel 35.5 64 0.0022 19.5 4.2 26 74-99 80-105 (108)
56 3mhp_C TIC62_peptide, ferredox 34.3 3.8 0.00013 18.8 -1.2 11 44-54 2-12 (26)
57 1x2l_A CUT-like 2, homeobox pr 31.5 51 0.0017 19.8 3.2 31 68-98 46-78 (101)
58 1wjz_A 1700030A21RIK protein; 29.9 28 0.00097 19.8 1.9 39 56-94 35-85 (94)
59 1bq0_A DNAJ, HSP40; chaperone, 29.5 21 0.00071 21.0 1.2 38 56-93 22-65 (103)
60 3apq_A DNAJ homolog subfamily 29.2 71 0.0024 20.4 4.0 40 56-95 21-66 (210)
61 2l6l_A DNAJ homolog subfamily 28.4 1.1E+02 0.0038 19.0 5.0 41 55-95 28-80 (155)
62 2qsa_A DNAJ homolog DNJ-2; J-d 27.6 35 0.0012 20.1 2.0 40 56-95 35-83 (109)
63 1wh6_A CUT-like 2, homeobox pr 27.1 42 0.0014 20.2 2.3 31 68-98 46-78 (101)
64 3ygs_P Procaspase 9; apoptosis 25.1 1.1E+02 0.0036 17.7 3.9 16 44-59 64-79 (97)
65 1n4c_A Auxilin; four helix bun 24.5 29 0.00098 23.1 1.3 35 56-90 136-178 (182)
66 3itf_A Periplasmic adaptor pro 24.2 1.2E+02 0.0041 19.2 4.2 25 75-99 109-133 (145)
67 3bqs_A Uncharacterized protein 23.5 58 0.002 19.1 2.4 24 77-100 62-85 (93)
68 1wh8_A CUT-like 2, homeobox pr 23.1 78 0.0027 19.3 3.0 31 68-98 56-88 (111)
69 4esu_A Ryanodine receptor 1; p 22.7 58 0.002 22.0 2.6 17 82-98 64-80 (210)
70 2e9x_A DNA replication complex 21.9 71 0.0024 20.1 2.8 18 81-98 102-119 (149)
71 1v65_A Riken cDNA 2610044O15; 21.9 69 0.0023 15.7 2.3 18 80-97 20-37 (64)
72 1v54_D Cytochrome C oxidase su 21.6 58 0.002 21.0 2.2 16 81-96 47-62 (147)
73 3epy_A Acyl-COA-binding domain 20.7 87 0.003 18.1 2.8 27 74-100 53-83 (89)
74 2p3x_A Polyphenol oxidase, chl 20.2 49 0.0017 23.9 1.9 19 81-99 50-68 (339)
No 1
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=6.2e-24 Score=130.67 Aligned_cols=68 Identities=25% Similarity=0.508 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 34 HLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 34 ~~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.....++++.||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 11 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 78 (90)
T 1wgf_A 11 QEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALK 78 (90)
T ss_dssp SCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred cCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999875
No 2
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.90 E-value=6.8e-24 Score=129.71 Aligned_cols=66 Identities=36% Similarity=0.501 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 36 GHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 36 ~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
...+++++||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 75 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALA 75 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999864
No 3
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.4e-23 Score=126.92 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=64.0
Q ss_pred ccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 32 SLHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMH--NSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 32 ~~~~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~--~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
+......++++.||||+|||||||+++|..|+.++|+++ +.||+++||++|+.|++++|++|+++|+++|
T Consensus 4 g~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 75 (86)
T 2eqz_A 4 GSSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADK 75 (86)
T ss_dssp CCSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344556779999999999999999999999999999986 6999999999999999999999999998764
No 4
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=3.9e-23 Score=129.77 Aligned_cols=68 Identities=18% Similarity=0.351 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 34 HLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 34 ~~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
...+.++++.||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 75 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAK 75 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999998764
No 5
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.89 E-value=2.5e-23 Score=123.92 Aligned_cols=62 Identities=66% Similarity=1.127 Sum_probs=58.2
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 40 ~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++++||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 62 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 62 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999998764
No 6
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.5e-23 Score=124.54 Aligned_cols=61 Identities=26% Similarity=0.488 Sum_probs=58.6
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy15636 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMH-NSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100 (101)
Q Consensus 40 ~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~-~~eisk~~~~~W~~ls~~eK~~y~~~A~~~ 100 (101)
+++.||||+|||||||+++|..|+.+||+++ +.||+++||++|+.|+++||++|+++|+++
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999998 999999999999999999999999999875
No 7
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.88 E-value=2.6e-23 Score=124.16 Aligned_cols=64 Identities=25% Similarity=0.526 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 38 HHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 38 ~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++|++.||||+|||||||++.|..++.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 64 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 64 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999998764
No 8
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.88 E-value=4.7e-23 Score=121.06 Aligned_cols=60 Identities=60% Similarity=1.125 Sum_probs=54.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 42 ~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++||||+|||||||+++|..++.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 60 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLR 60 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999998764
No 9
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.88 E-value=3.4e-23 Score=129.50 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 36 GHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 36 ~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.+.++++.||||+|||||||++.|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 3 kk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 68 (99)
T 1k99_A 3 KLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREK 68 (99)
T ss_dssp CCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 466799999999999999999999999999999999999999999999999999999999998764
No 10
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.88 E-value=6.6e-23 Score=126.47 Aligned_cols=64 Identities=28% Similarity=0.541 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 38 HHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 38 ~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.++++.||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 65 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEK 65 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999998764
No 11
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=124.39 Aligned_cols=63 Identities=25% Similarity=0.450 Sum_probs=60.6
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 39 HSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 39 ~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.+++.||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 65 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDL 65 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999875
No 12
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=9.2e-23 Score=122.20 Aligned_cols=60 Identities=68% Similarity=1.153 Sum_probs=57.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 42 ~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
|+||||+|||||||++.|..++.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 60 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLR 60 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999998764
No 13
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=128.46 Aligned_cols=72 Identities=53% Similarity=0.943 Sum_probs=58.5
Q ss_pred ccccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 30 LHSLHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 30 ~~~~~~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.........+++++||||+|||||||+++|..++.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 16 ~~~~~~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 87 (106)
T 4euw_A 16 SENLYFQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLR 87 (106)
T ss_dssp ------------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 333445667889999999999999999999999999999999999999999999999999999999998764
No 14
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.88 E-value=1.4e-22 Score=122.38 Aligned_cols=63 Identities=29% Similarity=0.567 Sum_probs=60.2
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 39 HSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 39 ~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.++++||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 65 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYK 65 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999998764
No 15
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.88 E-value=2e-22 Score=122.61 Aligned_cols=61 Identities=67% Similarity=1.151 Sum_probs=58.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 41 EGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 41 ~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
+++||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 62 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 62 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999998764
No 16
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.88 E-value=1.5e-22 Score=122.42 Aligned_cols=62 Identities=56% Similarity=1.045 Sum_probs=56.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 40 ~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.+++||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 64 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLR 64 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999998764
No 17
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=3.1e-22 Score=121.96 Aligned_cols=60 Identities=28% Similarity=0.576 Sum_probs=57.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 42 ~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 60 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKER 60 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999998764
No 18
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.87 E-value=3.1e-22 Score=120.30 Aligned_cols=60 Identities=88% Similarity=1.375 Sum_probs=57.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 42 ~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++||||+|||||||++.|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 60 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999998764
No 19
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=1.8e-22 Score=121.71 Aligned_cols=61 Identities=56% Similarity=0.994 Sum_probs=57.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 41 EGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 41 ~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.++||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 62 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLS 62 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999998764
No 20
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.86 E-value=1.3e-22 Score=122.78 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 38 HHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMH--NSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 38 ~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~--~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
+++++.||||+|||||||+++|..|+.++|+++ +.+|+++||++|+.|++++|++|+++|+++|
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 67 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 67 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999986 5999999999999999999999999998764
No 21
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.86 E-value=1.3e-22 Score=125.38 Aligned_cols=68 Identities=26% Similarity=0.513 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 34 HLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 34 ~~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.....++++.|+||+|||||||+++|..|+.+||++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 11 ~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 78 (93)
T 1cg7_A 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADK 78 (93)
T ss_dssp CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHH
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999998753
No 22
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.86 E-value=8.3e-22 Score=116.72 Aligned_cols=59 Identities=32% Similarity=0.552 Sum_probs=56.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 41 EGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 41 ~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
|+.||||+||||+||+++|..|+.++|++++.||+++||++|+.| ++|++|+++|+++|
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k 59 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDK 59 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999 89999999998864
No 23
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.86 E-value=5.5e-22 Score=116.62 Aligned_cols=59 Identities=25% Similarity=0.390 Sum_probs=55.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHN--SEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 43 ~pkRP~saf~lf~~~~r~~~~~~~p~~~~--~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
+||||+|||++||+++|..++.++|+++. .+|+++||++|+.|++++|++|+++|+++|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 61 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 61 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999865 999999999999999999999999998864
No 24
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.85 E-value=1e-21 Score=116.32 Aligned_cols=58 Identities=26% Similarity=0.609 Sum_probs=55.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 42 ~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
+.||||+|||||||+++|..|+.+||++++.+|+++||++|+.|++ |++|+++|+++|
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k 59 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAK 59 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999998 999999998864
No 25
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.84 E-value=1.4e-22 Score=126.13 Aligned_cols=68 Identities=24% Similarity=0.498 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 34 HLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMH--NSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 34 ~~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~--~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.....++++.||||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|++|+++|+++|
T Consensus 13 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 82 (97)
T 2lhj_A 13 PRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDR 82 (97)
T ss_dssp TTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHH
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999999999 9999999999999999999999999998764
No 26
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.9e-21 Score=118.66 Aligned_cols=63 Identities=17% Similarity=0.340 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 37 HHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRL---GAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 37 ~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~---~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
...+.+.||||+|||||||+++|..|+.+ ++++.||+++| |++|+.|+++||++|+++|+++|
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K 69 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWR 69 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44578889999999999999999999988 89999999999 99999999999999999999864
No 27
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=109.63 Aligned_cols=56 Identities=32% Similarity=0.486 Sum_probs=52.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 42 ~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++||||+|||++||+++|..++.++| .+|+++||++|+.|++++|++|+++|+++|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k 56 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDE 56 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999987765 799999999999999999999999998764
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=124.75 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=63.5
Q ss_pred cCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 33 LHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPK--MHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 33 ~~~~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~--~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++....++++.||||+|||+|||+++|..|+.+||+ +++.+|+++||++|+.|+++||++|+++|+++|
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 75 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 75 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 444566799999999999999999999999999999 699999999999999999999999999998763
No 29
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=3.8e-20 Score=117.33 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=59.1
Q ss_pred cCCCCCCCCCCC-CCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 33 LHLGHHHSEGHI-KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 33 ~~~~~~~~~~~p-kRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
....+.++++.| |||+|||+|||+++|..++ ++++.||+++||++|+.|+++||++|+++|+++|
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k 71 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKK 71 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344566789999 9999999999999999887 8899999999999999999999999999998764
No 30
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.81 E-value=4.2e-20 Score=123.38 Aligned_cols=66 Identities=24% Similarity=0.507 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 36 GHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 36 ~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
...++++.||||+|||+|||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k 146 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 146 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999998764
No 31
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.81 E-value=1e-21 Score=121.04 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 37 HHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMH--NSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 37 ~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~--~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
..+|++.||||+|||||||.++|..|+.+||+++ +.||+ ++|+.|++++|++|+++|+++|
T Consensus 16 ~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K 78 (90)
T 2yuk_A 16 WEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNR 78 (90)
T ss_dssp HHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999 99998 9999999999999999999875
No 32
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.3e-20 Score=123.82 Aligned_cols=66 Identities=24% Similarity=0.507 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 36 GHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 36 ~~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
...++++.||||+|||||||+++|..|+.++|++++.+|+++||++|+.|++++|++|+++|+++|
T Consensus 94 k~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k 159 (173)
T 2yrq_A 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 159 (173)
T ss_dssp CSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred ccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999999999999999999999998764
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.80 E-value=7.5e-20 Score=112.74 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=56.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 42 ~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++|+||+|||+||+++.|..++.++|+ ++.+|++.||++|+.|+++||++|+++|+++|
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK 61 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQ 61 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999 99999999999999999999999999998874
No 34
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.80 E-value=4.5e-20 Score=130.78 Aligned_cols=65 Identities=18% Similarity=0.400 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 37 HHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 37 ~~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
...+++.||||+|||+|||+++|..|+.+||++++.||+++||++|+.|+++||++|+++|+++|
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k 99 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 99 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999998753
No 35
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=2.9e-19 Score=111.97 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 38 HHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 38 ~~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.....+||||+|||||||++++. ..+++++++.||+++||++|+.|+++||++|+++|+++|
T Consensus 3 s~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k 64 (101)
T 1v63_A 3 SGSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQ 64 (101)
T ss_dssp CCCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567899999999999999974 345566889999999999999999999999999998764
No 36
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.76 E-value=3.5e-19 Score=124.51 Aligned_cols=63 Identities=19% Similarity=0.415 Sum_probs=59.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 39 HSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 39 ~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
..++.||||+|||++||+++|..|+.+||++++.||+++||++|+.|+++||.+|+++|+++|
T Consensus 5 ~~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k 67 (214)
T 3tq6_A 5 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 67 (214)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999998753
No 37
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.74 E-value=5.7e-18 Score=112.98 Aligned_cols=62 Identities=66% Similarity=1.127 Sum_probs=58.8
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 40 ~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
.+++||||+||||+|+.+.+..|+.++|++++.||+++||++|+.|++++|++|+++|+++|
T Consensus 1 g~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 62 (159)
T 2gzk_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 62 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999998753
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.65 E-value=2.2e-17 Score=115.36 Aligned_cols=59 Identities=31% Similarity=0.432 Sum_probs=53.6
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 39 HSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 39 ~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++++.||||+|||+|||+++|..++.++| .+|+++||++|+.|++++|++|+++|+++|
T Consensus 110 kdp~~PKrP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k 168 (214)
T 3tq6_A 110 TLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDE 168 (214)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSSCSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ccccCcccccchhhhhHHHHHHhhccCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999998876555 499999999999999999999999998764
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.62 E-value=3.5e-17 Score=115.94 Aligned_cols=59 Identities=31% Similarity=0.432 Sum_probs=53.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy15636 39 HSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101 (101)
Q Consensus 39 ~~~~~pkRP~saf~lf~~~~r~~~~~~~p~~~~~eisk~~~~~W~~ls~~eK~~y~~~A~~~k 101 (101)
++++.||||+|||+|||+++|..++.++| .+|+++||++|+.|++++|++|+++|+++|
T Consensus 142 kdp~~PKrP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k 200 (238)
T 3tmm_A 142 TLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDE 200 (238)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSCCSSH----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHH
T ss_pred cccCCCCCCCcHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999998876655 499999999999999999999999998864
No 40
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.16 E-value=9.6 Score=22.38 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHH-HHHH
Q psy15636 55 SRGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEK-RPFI 94 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK-~~y~ 94 (101)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++ ..|.
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 80 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80 (99)
T ss_dssp HHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3566667778889865 36789999999999986555 4454
No 41
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=73.19 E-value=2.2 Score=28.95 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHh
Q psy15636 67 PKMHNSEISKR-LGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 67 p~~~~~eisk~-~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
|-..+..+++. +|..|+.+++++|+.|.+.-..
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~ 103 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKS 103 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHH
Confidence 44567777665 4899999999999999976543
No 42
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=68.86 E-value=14 Score=21.11 Aligned_cols=52 Identities=6% Similarity=0.171 Sum_probs=36.3
Q ss_pred CCCCCcHHHHH-----------HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHH-HHHHHHH
Q psy15636 44 IKRPMNAFMVW-----------SRGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEM-EKRPFID 95 (101)
Q Consensus 44 pkRP~saf~lf-----------~~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~-eK~~y~~ 95 (101)
.....+.|-++ .+.+|..++.-||+.. ..+..+.|.+.|..|++. .|..|..
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~ 80 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDH 80 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 33456777776 3556666777788753 678899999999999754 4555543
No 43
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=65.07 E-value=12 Score=21.61 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCCC--HHHHHHHHHHHHhcCCHHH-HHHHH
Q psy15636 55 SRGQRRKMALDNPKMH--NSEISKRLGAEWKLLTEME-KRPFI 94 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~--~~eisk~~~~~W~~ls~~e-K~~y~ 94 (101)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3556666777888764 5678899999999997555 44554
No 44
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=62.96 E-value=17 Score=20.04 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHH-HHHHH
Q psy15636 56 RGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEME-KRPFI 94 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~e-K~~y~ 94 (101)
+.+|..++.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 65 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 455666777788753 5789999999999997555 44554
No 45
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.24 E-value=13 Score=20.69 Aligned_cols=40 Identities=10% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHH-HHHHH
Q psy15636 55 SRGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEME-KRPFI 94 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~e-K~~y~ 94 (101)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.. |..|.
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 70 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYD 70 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3556666777788754 3678899999999997544 44554
No 46
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.74 E-value=18 Score=19.95 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCCHHH-HHHHH
Q psy15636 55 SRGQRRKMALDNPKMH----NSEISKRLGAEWKLLTEME-KRPFI 94 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls~~e-K~~y~ 94 (101)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 25 k~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 69 (78)
T 2ctp_A 25 KKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 69 (78)
T ss_dssp HHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3556666677788864 4678899999999997554 45554
No 47
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=58.45 E-value=20 Score=19.50 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=28.0
Q ss_pred HHHHHHHHhhCCCCCH--HHHHHHHHHHHhcCCHHHH-HHHH
Q psy15636 56 RGQRRKMALDNPKMHN--SEISKRLGAEWKLLTEMEK-RPFI 94 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~~--~eisk~~~~~W~~ls~~eK-~~y~ 94 (101)
+.+|...+.-||+... .+..+.|.+.|..|++.++ ..|.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 5566666777887643 5888999999999975554 4554
No 48
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.10 E-value=27 Score=20.78 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCcHHHHH-----------HHHHHHHHHhhCCCCCH-----HHHHHHHHHHHhcCCHHH-HHHHH
Q psy15636 47 PMNAFMVW-----------SRGQRRKMALDNPKMHN-----SEISKRLGAEWKLLTEME-KRPFI 94 (101)
Q Consensus 47 P~saf~lf-----------~~~~r~~~~~~~p~~~~-----~eisk~~~~~W~~ls~~e-K~~y~ 94 (101)
..++|-++ .+.+|..++.-||+... .+..+.|.+.|..|++.. |..|.
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 35667665 35566677788898653 578899999999997554 44454
No 49
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.18 E-value=16 Score=21.89 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHH-HHHHHH
Q psy15636 55 SRGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEME-KRPFID 95 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~e-K~~y~~ 95 (101)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.+ |..|..
T Consensus 38 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~ 84 (112)
T 2ctq_A 38 LAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDH 84 (112)
T ss_dssp HHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3556666777788765 3688999999999997554 555543
No 50
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.02 E-value=24 Score=20.14 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCCHHH-HHHHH
Q psy15636 56 RGQRRKMALDNPKMH------NSEISKRLGAEWKLLTEME-KRPFI 94 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~------~~eisk~~~~~W~~ls~~e-K~~y~ 94 (101)
+.+|..++.-||+.. ..+..+.|.+.|..|++.. |..|.
T Consensus 28 ~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (92)
T 2dmx_A 28 KAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYD 73 (92)
T ss_dssp HHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 556666777788754 3568899999999997554 45554
No 51
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=48.31 E-value=30 Score=20.27 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCCHH-HHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH------NSEISKRLGAEWKLLTEM-EKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~------~~eisk~~~~~W~~ls~~-eK~~y~~ 95 (101)
+.+|...+.-||+.. ..+..+.|.+.|..|++. .|..|..
T Consensus 21 ~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~ 67 (99)
T 2lgw_A 21 KAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDR 67 (99)
T ss_dssp HHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 455666667788754 457889999999999755 4555554
No 52
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.39 E-value=22 Score=20.23 Aligned_cols=40 Identities=5% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhcCC-HHHHHHHH
Q psy15636 55 SRGQRRKMALDNPKMH----NSEISKRLGAEWKLLT-EMEKRPFI 94 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~----~~eisk~~~~~W~~ls-~~eK~~y~ 94 (101)
.+.+|..++.-||+.. ..+..+.|.+.|..|+ +..|..|.
T Consensus 25 k~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (88)
T 2ctr_A 25 KKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69 (88)
T ss_dssp HHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3556667777889865 3678889999999996 45555554
No 53
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.65 E-value=22 Score=19.75 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCCHHH-HHHHH
Q psy15636 55 SRGQRRKMALDNPKMH------NSEISKRLGAEWKLLTEME-KRPFI 94 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~------~~eisk~~~~~W~~ls~~e-K~~y~ 94 (101)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.. |..|.
T Consensus 27 k~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 73 (82)
T 2ej7_A 27 KKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYD 73 (82)
T ss_dssp HHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3556666677788764 2457889999999997554 44554
No 54
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.70 E-value=37 Score=19.38 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHHHhhCCCC----CHHHHHHHHHHHHhcCCHHHH
Q psy15636 56 RGQRRKMALDNPKM----HNSEISKRLGAEWKLLTEMEK 90 (101)
Q Consensus 56 ~~~r~~~~~~~p~~----~~~eisk~~~~~W~~ls~~eK 90 (101)
+.+|..++.-||+. ...+..+.|.+.|..|++..|
T Consensus 46 ~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 84 (90)
T 2ys8_A 46 KAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK 84 (90)
T ss_dssp HHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccc
Confidence 55666777778875 367788889999988887654
No 55
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=35.46 E-value=64 Score=19.48 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 74 ISKRLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 74 isk~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
..+.--++...|++|.|..|.+..++
T Consensus 80 ~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 80 HMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45566788999999999999987654
No 56
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=34.34 E-value=3.8 Score=18.76 Aligned_cols=11 Identities=9% Similarity=0.679 Sum_probs=7.7
Q ss_pred CCCCCcHHHHH
Q psy15636 44 IKRPMNAFMVW 54 (101)
Q Consensus 44 pkRP~saf~lf 54 (101)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 46788887655
No 57
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=31.54 E-value=51 Score=19.85 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHH
Q psy15636 68 KMHNSEISKRLG--AEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 68 ~~~~~eisk~~~--~~W~~ls~~eK~~y~~~A~ 98 (101)
+.+..-++.+|. +-|..|....|+.|..+..
T Consensus 46 grsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~n 78 (101)
T 1x2l_A 46 GLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQ 78 (101)
T ss_dssp CSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHH
T ss_pred ccccchHHHHhcCCCCHHHHhHhhhHHHHHHHH
Confidence 567777777777 6899999999999998874
No 58
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=29.89 E-value=28 Score=19.79 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCCCCC-----------HHHHHHHHHHHHhcCCHHH-HHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----------NSEISKRLGAEWKLLTEME-KRPFI 94 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----------~~eisk~~~~~W~~ls~~e-K~~y~ 94 (101)
+.+|..++.-||+.. ..+..+.|.+.|..|++.. |..|.
T Consensus 35 ~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 85 (94)
T 1wjz_A 35 QKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYD 85 (94)
T ss_dssp HHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 445555566688763 3468889999999998554 44554
No 59
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=29.48 E-value=21 Score=20.97 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHHH-HHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEMEK-RPF 93 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~eK-~~y 93 (101)
+.+|..++.-||+.. ..+..+.|.+.|..|++..+ ..|
T Consensus 22 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 65 (103)
T 1bq0_A 22 KAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65 (103)
T ss_dssp HHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHT
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 455666667788754 35788899999999975544 444
No 60
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=29.21 E-value=71 Score=20.43 Aligned_cols=40 Identities=5% Similarity=0.171 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCCCCC-----HHHHHHHHHHHHhcCCHHH-HHHHHH
Q psy15636 56 RGQRRKMALDNPKMH-----NSEISKRLGAEWKLLTEME-KRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~-----~~eisk~~~~~W~~ls~~e-K~~y~~ 95 (101)
+.+|...+.-||+.. ..+..+.+.+.|..|++.+ |..|..
T Consensus 21 ~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~ 66 (210)
T 3apq_A 21 QAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDK 66 (210)
T ss_dssp HHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455566666677643 5678888999999998555 445543
No 61
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=28.38 E-value=1.1e+02 Score=19.02 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhCCCCC-----------HHHHHHHHHHHHhcCCHH-HHHHHHH
Q psy15636 55 SRGQRRKMALDNPKMH-----------NSEISKRLGAEWKLLTEM-EKRPFID 95 (101)
Q Consensus 55 ~~~~r~~~~~~~p~~~-----------~~eisk~~~~~W~~ls~~-eK~~y~~ 95 (101)
.+.+|...+.-||+.. ..+..+.|.+.|..|++. .|..|..
T Consensus 28 k~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~ 80 (155)
T 2l6l_A 28 KQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDL 80 (155)
T ss_dssp HHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556666777788753 247889999999999854 4556653
No 62
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=27.57 E-value=35 Score=20.11 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCCC--------HHHHHHHHHHHHhcCC-HHHHHHHHH
Q psy15636 56 RGQRRKMALDNPKMH--------NSEISKRLGAEWKLLT-EMEKRPFID 95 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~--------~~eisk~~~~~W~~ls-~~eK~~y~~ 95 (101)
+.+|...+.-||+.. ..+..+.|.+.|..|+ +..|..|..
T Consensus 35 ~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~ 83 (109)
T 2qsa_A 35 KAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDY 83 (109)
T ss_dssp HHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 455666677788754 3478899999999997 455556654
No 63
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=27.14 E-value=42 Score=20.22 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHH
Q psy15636 68 KMHNSEISKRLG--AEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 68 ~~~~~eisk~~~--~~W~~ls~~eK~~y~~~A~ 98 (101)
+.+..-++..+. +-|+.|+...|..|..+..
T Consensus 46 grsqgtlSdlL~~PKpW~~L~~~Gre~fiRM~n 78 (101)
T 1wh6_A 46 GLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQL 78 (101)
T ss_dssp CCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHH
T ss_pred ccCcCcHHHHhcCCCCHHHHhHHhHHHHHHHHH
Confidence 556667777777 6799999999999998864
No 64
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.10 E-value=1.1e+02 Score=17.71 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=13.4
Q ss_pred CCCCCcHHHHHHHHHH
Q psy15636 44 IKRPMNAFMVWSRGQR 59 (101)
Q Consensus 44 pkRP~saf~lf~~~~r 59 (101)
++|-..||-.||..-+
T Consensus 64 ~~rG~~Af~~F~~aL~ 79 (97)
T 3ygs_P 64 ETRGSQALPLFISCLE 79 (97)
T ss_dssp TTSCTTHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHH
Confidence 6777899999998765
No 65
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=24.45 E-value=29 Score=23.08 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=21.1
Q ss_pred HHHHHHHHhhCCCCC--------HHHHHHHHHHHHhcCCHHHH
Q psy15636 56 RGQRRKMALDNPKMH--------NSEISKRLGAEWKLLTEMEK 90 (101)
Q Consensus 56 ~~~r~~~~~~~p~~~--------~~eisk~~~~~W~~ls~~eK 90 (101)
+.+|..++.-||+.. ..+..+.|.+.|..|++.++
T Consensus 136 kAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~k 178 (182)
T 1n4c_A 136 KVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 178 (182)
T ss_dssp HHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHh
Confidence 334444445566432 45677778888888876654
No 66
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=24.18 E-value=1.2e+02 Score=19.21 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy15636 75 SKRLGAEWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 75 sk~~~~~W~~ls~~eK~~y~~~A~~ 99 (101)
.+.--+++..|++|.|..|.+..++
T Consensus 109 ~k~~~qiy~vLTPEQk~ql~e~~~~ 133 (145)
T 3itf_A 109 AKVRNQMYRLLTPEQQAVLNEKHQQ 133 (145)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 4555688899999999999876553
No 67
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=23.47 E-value=58 Score=19.10 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q psy15636 77 RLGAEWKLLTEMEKRPFIDEAKRL 100 (101)
Q Consensus 77 ~~~~~W~~ls~~eK~~y~~~A~~~ 100 (101)
+-|..|..+++++|+...+.++.+
T Consensus 62 i~G~~w~~l~~~~K~~L~~~~~~~ 85 (93)
T 3bqs_A 62 VQGIRWHGLDEAKKIELKKFHQSL 85 (93)
T ss_dssp HHTSCGGGSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHCCHHHHHHHHHHHHHh
Confidence 345779999999999988877643
No 68
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=23.08 E-value=78 Score=19.33 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHH
Q psy15636 68 KMHNSEISKRLG--AEWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 68 ~~~~~eisk~~~--~~W~~ls~~eK~~y~~~A~ 98 (101)
+.+..-|+..|. +-|..|....|+.|..+..
T Consensus 56 grsQgtlSdlL~~PkpW~~L~~~GRe~yiRM~n 88 (111)
T 1wh8_A 56 GLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQL 88 (111)
T ss_dssp CCCHHHHHHHHHSCCCTTTSCHHHHHHHHHHHH
T ss_pred ccCcCcHHHHHcCCCCHHHHhHhhhHHHHHHHH
Confidence 566777788777 6899999888999998864
No 69
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport; 1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A 3rqr_A
Probab=22.70 E-value=58 Score=22.04 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.9
Q ss_pred HhcCCHHHHHHHHHHHH
Q psy15636 82 WKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 82 W~~ls~~eK~~y~~~A~ 98 (101)
|..|++.+|..|...+.
T Consensus 64 ~~~L~e~eK~~~r~~~~ 80 (210)
T 4esu_A 64 YKTFSEKDKEIYRWPIK 80 (210)
T ss_dssp GGGCCHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHH
Confidence 78999999999988764
No 70
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=21.86 E-value=71 Score=20.09 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=13.9
Q ss_pred HHhcCCHHHHHHHHHHHH
Q psy15636 81 EWKLLTEMEKRPFIDEAK 98 (101)
Q Consensus 81 ~W~~ls~~eK~~y~~~A~ 98 (101)
.+..||++|.++|.+-.+
T Consensus 102 ~~~~LS~~E~~f~~~Y~~ 119 (149)
T 2e9x_A 102 LRFHMAAEEMEWFNNYKR 119 (149)
T ss_dssp HHHTSCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 367899999998876543
No 71
>1v65_A Riken cDNA 2610044O15; transcriptional repressor, heterochromatin, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.212.1.1
Probab=21.85 E-value=69 Score=15.75 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=14.8
Q ss_pred HHHhcCCHHHHHHHHHHH
Q psy15636 80 AEWKLLTEMEKRPFIDEA 97 (101)
Q Consensus 80 ~~W~~ls~~eK~~y~~~A 97 (101)
+.|..|.+.+|..|.+..
T Consensus 20 eew~~l~~~qk~ly~~v~ 37 (64)
T 1v65_A 20 EEWDLLDSSQKRLYEEVM 37 (64)
T ss_dssp HHHHTSCHHHHHHHHHHH
T ss_pred HHHhCCCHHHhhheeehh
Confidence 679999999999988643
No 72
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=21.55 E-value=58 Score=20.98 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=11.8
Q ss_pred HHhcCCHHHHHHHHHH
Q psy15636 81 EWKLLTEMEKRPFIDE 96 (101)
Q Consensus 81 ~W~~ls~~eK~~y~~~ 96 (101)
-|+.||.+||+--...
T Consensus 47 dWk~LT~eEKkAlYri 62 (147)
T 1v54_D 47 SWSSLSIDEKVELYRL 62 (147)
T ss_dssp CGGGSCHHHHHHHHHH
T ss_pred CHHHcCHHHHHHHHHH
Confidence 4999998888754433
No 73
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=20.66 E-value=87 Score=18.12 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcC---C-HHHHHHHHHHHHhc
Q psy15636 74 ISKRLGAEWKLL---T-EMEKRPFIDEAKRL 100 (101)
Q Consensus 74 isk~~~~~W~~l---s-~~eK~~y~~~A~~~ 100 (101)
+.+.--+.|+.+ | ++-++.|.+..+++
T Consensus 53 ~~~aKw~AW~~l~g~s~eeA~~~Yi~~v~~l 83 (89)
T 3epy_A 53 KGKAKWEAWNLKKGLSTEDATSAYISKAKEL 83 (89)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 444445778665 4 66789999888764
No 74
>2p3x_A Polyphenol oxidase, chloroplast; grenache grapes, oxidoreductase; 2.20A {Vitis vinifera}
Probab=20.16 E-value=49 Score=23.91 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=14.8
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q psy15636 81 EWKLLTEMEKRPFIDEAKR 99 (101)
Q Consensus 81 ~W~~ls~~eK~~y~~~A~~ 99 (101)
.|+.|+.+||..|.+.-+.
T Consensus 50 e~~~Ls~~er~~yi~Av~~ 68 (339)
T 2p3x_A 50 AAHLVSKEYLAKYKKAIEL 68 (339)
T ss_dssp BGGGCCHHHHHHHHHHHHH
T ss_pred chhhCCHHHHHHHHHHHHH
Confidence 4889999999998875543
Done!