RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15636
(101 letters)
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens}
Length = 71
Score = 104 bits (261), Expect = 3e-31
Identities = 36/60 (60%), Positives = 49/60 (81%)
Query: 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
G I+RPMNAFMVW++ +R+++A NP +HN+E+SK LG WK LT EKRPF++EA+RLR
Sbjct: 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLR 60
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription
factor 1, high mobility group box transcription factor
1, structural genomics; NMR {Homo sapiens}
Length = 87
Score = 104 bits (261), Expect = 4e-31
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKR 99
S KRPMNAFM++++ R + P N IS LG WK + E+R + EAK
Sbjct: 14 SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKA 73
Query: 100 LR 101
L
Sbjct: 74 LA 75
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX
domain, structural genomics, NPPSFA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
Length = 82
Score = 103 bits (259), Expect = 7e-31
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKR 99
+RPMNAF+++ + R + ++P++ N +K L W +L EK+ + D AK
Sbjct: 4 GSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 63
Query: 100 LR 101
+
Sbjct: 64 YK 65
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA
complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1
PDB: 1hrz_A*
Length = 76
Score = 102 bits (257), Expect = 1e-30
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 41 EGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100
+ +KRPMNAF+VWSR QRRKMAL+NP+M NSEISK+LG +WK+LTE EK PF EA++L
Sbjct: 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61
Query: 101 R 101
+
Sbjct: 62 Q 62
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition,
chromatin, DNA binding protein, DNA sequence specific,
testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Length = 81
Score = 102 bits (256), Expect = 2e-30
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 41 EGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100
HIKRPMNAFMVW++ +RRK+ P MHNS ISK LG+ WK +T +EK+P+ +E RL
Sbjct: 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARL 61
Query: 101 R 101
Sbjct: 62 S 62
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation,
transcription-DNA CO; HET: DNA; 2.40A {Mus musculus}
Length = 79
Score = 100 bits (251), Expect = 1e-29
Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
GHIKRPMNAFMVWS+ +RRK+ +P MHN+EISKRLG WKLL + +K PFI EA+RLR
Sbjct: 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLR 60
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain,
endodermal, activator, DNA- nucleus, transcription
regulation, transcrip complex; HET: DNA; 2.75A {Mus
musculus} PDB: 2yul_A
Length = 83
Score = 99 bits (250), Expect = 1e-29
Identities = 35/62 (56%), Positives = 48/62 (77%)
Query: 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKR 99
I+RPMNAFMVW++ +R+++A NP +HN+E+SK LG WK LT EKRPF++EA+R
Sbjct: 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAER 62
Query: 100 LR 101
LR
Sbjct: 63 LR 64
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor,
SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP:
a.21.1.1 PDB: 1j47_A
Length = 85
Score = 99 bits (250), Expect = 2e-29
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 41 EGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100
+ +KRPMNAF+VWSR QRRKMAL+NP+M NSEISK+LG +WK+LTE EK PF EA++L
Sbjct: 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61
Query: 101 R 101
+
Sbjct: 62 Q 62
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain,
activator, DNA-binding, NUC transcription; HET: DNA;
2.77A {Homo sapiens}
Length = 106
Score = 99.8 bits (249), Expect = 5e-29
Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
Query: 12 LGHHHSEGHIKRPMNALSLHSLHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHN 71
+ HHH H + +L+ ++ H+KRPMNAFMVW++ RRK+A P +HN
Sbjct: 1 MAHHH---HHHVDDDDKMSENLYFQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHN 57
Query: 72 SEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
+E+SK LG W+LL E EKRPF++EA+RLR
Sbjct: 58 AELSKTLGKLWRLLNESEKRPFVEEAERLR 87
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus
musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Length = 80
Score = 98.8 bits (247), Expect = 5e-29
Identities = 53/59 (89%), Positives = 56/59 (94%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
+KRPMNAFMVWSRGQRRKMA +NPKMHNSEISKRLGAEWKLL+E EKRPFIDEAKRLR
Sbjct: 2 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: a.21.1.1
Length = 90
Score = 98.6 bits (246), Expect = 8e-29
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKR 99
KRP++A ++S +RR++ + P++ SE+++ L W L+E +K +
Sbjct: 17 GSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAA 76
Query: 100 LR 101
L+
Sbjct: 77 LK 78
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG,
TCR-A, transcription factor; HET: DNA; NMR {Mus
musculus} SCOP: a.21.1.1
Length = 86
Score = 97.3 bits (243), Expect = 2e-28
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
HIK+P+NAFM++ + R + ++ ++ I++ LG W L+ E+ + + A++ R
Sbjct: 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKER 60
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX,
amphoterin, DNA/structural protein complex; NMR {Homo
sapiens} SCOP: a.21.1.1 a.21.1.1
Length = 159
Score = 95.7 bits (238), Expect = 7e-27
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 41 EGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100
+ +KRPMNAF+VWSR QRRKMAL+NP+M NSEISK+LG +WK+LTE EK PF EA++L
Sbjct: 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61
Query: 101 R 101
+
Sbjct: 62 Q 62
Score = 86.4 bits (214), Expect = 3e-23
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 31 HSLHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEK 90
KRP +AF ++ R K+ ++P + +++K+LG W +K
Sbjct: 76 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 135
Query: 91 RPFIDEAKRLR 101
+P+ +A +L+
Sbjct: 136 QPYEKKAAKLK 146
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; structural DNA-binding protein
BRAF35, DNA-bending; NMR {Mus musculus}
Length = 92
Score = 87.0 bits (216), Expect = 3e-24
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
K P+ ++ + +R ++ +P + EI+K LGAEW L EK+ ++DEA++ +
Sbjct: 7 GPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEK 65
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A
1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Length = 77
Score = 81.5 bits (202), Expect = 2e-22
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
KRP +AF ++ R K+ ++P + +++K+LG W +K+P+ +A +L+
Sbjct: 6 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 64
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 81.7 bits (202), Expect = 4e-22
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKR 99
IK+PM+A ++ + R + ++NPK + + ++ WK L+E EK + ++A +
Sbjct: 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATK 63
Query: 100 LR 101
Sbjct: 64 DL 65
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding
protein; NMR {Drosophila melanogaster}
Length = 73
Score = 75.0 bits (185), Expect = 9e-20
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
KR AFM+W R + +NP + +EI+K+ G WK L +K + D A + +
Sbjct: 5 KRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELK--DKSKWEDAAAKDK 59
>3nm9_A HMG-D, high mobility group protein D; DNA bending,
non-sequence-specific, HMG chromosomal protein; HET:
DNA; 2.85A {Drosophila melanogaster} PDB: 1e7j_A* 1hma_A
1qrv_A*
Length = 73
Score = 72.7 bits (179), Expect = 6e-19
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
KRP++A+ +W R + +NP + +E++KR G W+ + +K + +A + +
Sbjct: 5 KRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAK 59
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 73.2 bits (180), Expect = 9e-19
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHN--SEISKRLGAEWKLLTEMEKRPFIDEAKRL 100
KR ++++M +++ +R ++ +NP++ + I K +GA W L++ EK+P+ +
Sbjct: 22 APKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDED 81
Query: 101 R 101
R
Sbjct: 82 R 82
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box
domain, structural genomics, NPPSFA; NMR {Mus musculus}
Length = 102
Score = 71.7 bits (176), Expect = 4e-18
Identities = 12/57 (21%), Positives = 30/57 (52%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
++P++A+ ++ R + + NP E+SK + + W L E +K+ + + + +
Sbjct: 19 QKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAK 75
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 70.9 bits (174), Expect = 6e-18
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
K+P+ + + +R K A +P+M N +++K L ++K L E +K +I + +R +
Sbjct: 12 KKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREK 68
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 70.0 bits (172), Expect = 2e-17
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
KR ++A+M ++ R + +NP + ++ K+LG +WK LT EK+P+ +A+ +
Sbjct: 22 KRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADK 78
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding,
helix-turn-helix motif, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 173
Score = 68.5 bits (167), Expect = 4e-16
Identities = 16/88 (18%), Positives = 36/88 (40%)
Query: 14 HHHSEGHIKRPMNALSLHSLHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSE 73
+ + + KRP +AF ++ R K+ ++P + +
Sbjct: 72 KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 131
Query: 74 ISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
++K+LG W +K+P+ +A +L+
Sbjct: 132 VAKKLGEMWNNTAADDKQPYEKKAAKLK 159
Score = 50.8 bits (121), Expect = 2e-09
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNP--KMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100
+ M+++ + + R + +P ++ SE SK+ WK ++ EK F D AK
Sbjct: 15 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 74
Query: 101 R 101
+
Sbjct: 75 K 75
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT
DNA, protein-drug-DNA compl regulation-DNA complex; HET:
DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB:
1j3x_A
Length = 71
Score = 64.3 bits (157), Expect = 2e-15
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNP--KMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
+ M+++ + + R + +P ++ SE SK+ WK ++ EK F D AK +
Sbjct: 3 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 61
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1
Length = 83
Score = 63.9 bits (156), Expect = 3e-15
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNP--KMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
+ M+++ + + R + +P ++ SE SK+ WK ++ EK F D AK +
Sbjct: 9 RGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 67
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group
protein 2A, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 86
Score = 62.0 bits (151), Expect = 2e-14
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNS--EISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
K M+A+ + + R + NP++ + E SK+ WK ++ EK F + AK +
Sbjct: 17 KGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADK 75
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial
transcription, activator, DNA- binding, mitochondrion,
phosphoprotein; 1.35A {Homo sapiens}
Length = 67
Score = 56.9 bits (138), Expect = 1e-12
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
G KRP +A+ V+ + ++ D+P+ E K + WK L++ EK +I AK
Sbjct: 1 GKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDE 56
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 59.5 bits (143), Expect = 3e-12
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 9 SLHLGHHHSEGHIKRPMNALSLHSLHLGHHHSE----GHIKRPMNAFMVWSRGQRRKMAL 64
S H HHHS G + R + S+ S K+P+++++ +S+ Q
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSSSVLASCPKKPVSSYLRFSKEQLPIFKA 62
Query: 65 DNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
NP +E+ +R+ W+ L + +K+ + D +
Sbjct: 63 QNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 99
Score = 54.1 bits (129), Expect = 3e-10
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 8 HSLHLGHHHSEGHIKRPMNALSLHSLHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNP 67
L S + G KRP +A+ V+ + ++ D+P
Sbjct: 111 EQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP 170
Query: 68 KMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
+ E K + WK L++ EK +I AK
Sbjct: 171 Q----EKLKTVKENWKNLSDSEKELYIQHAKEDE 200
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group
box domain, helix-turn-helix, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 56.3 bits (135), Expect = 3e-12
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHN-SEISKRLGAEWKLLTEMEKRPFIDEAK 98
S G RP F +W R + DNP + ++I K +++L+ E++ + ++AK
Sbjct: 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAK 61
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 55.5 bits (133), Expect = 5e-11
Identities = 12/57 (21%), Positives = 30/57 (52%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
K+P+++++ +S+ Q NP +E+ +R+ W+ L + +K+ + D +
Sbjct: 11 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 67
Score = 49.8 bits (118), Expect = 8e-09
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 9 SLHLGHHHSEGHIKRPMNALSLHSLHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPK 68
L S + G KRP +A+ V+ + ++ D+P+
Sbjct: 80 QLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ 139
Query: 69 MHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
E K + WK L++ EK +I AK
Sbjct: 140 ----EKLKTVKENWKNLSDSEKELYIQHAKEDE 168
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Length = 101
Score = 48.0 bits (114), Expect = 6e-09
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 36 GHHHSEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFID 95
G S G K PMN + +S+ L++ + E +G+ W+ +++ +K +
Sbjct: 1 GSSGSSGPKKPPMNGYQKFSQELLSNGELNHLPL--KERMVEIGSRWQRISQSQKEHYKK 58
Query: 96 EAKRLR 101
A+ +
Sbjct: 59 LAEEQQ 64
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
NMR {Mus musculus} SCOP: a.21.1.1
Length = 108
Score = 43.0 bits (101), Expect = 7e-07
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
K P N++ ++ M + ++E +WKLL++ EK + + + +
Sbjct: 19 KPPPNSYSLYCAELMANM----KDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKK 71
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.11
Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 35/122 (28%)
Query: 2 NSKLGLHSLHL----------GHH-----HSEGHIKRPMNALSLHSL------HLGHHHS 40
S + + S++L H H + L L H+GHH
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 41 EGHIKRPMNAFMVWSRGQRRKMALD----NPKM-HNSEISKRLGAEWKLLTEMEK-RPFI 94
M F R + LD K+ H+S G+ L +++ +P+I
Sbjct: 483 NIEHPERMTLF--------RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 95 DE 96
+
Sbjct: 535 CD 536
Score = 24.8 bits (53), Expect = 8.0
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 6 GLHSLHLGHHHSEGHIKRPMNALSLH---SLHLGHHHSEGHIKRPMNA-------FMVWS 55
+ L+L + +S + + L + HS +IK +++ +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQAELRRLLKSK 241
Query: 56 RGQRRKMALDN 66
+ + L N
Sbjct: 242 PYENCLLVLLN 252
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 93
Score = 29.1 bits (64), Expect = 0.11
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 45 KRPMNAFMVWSRGQRRKM-ALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
K NA+ + + + ++ P ++ ++W LL E EK + + A+ R
Sbjct: 12 KASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWR 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.1
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 25 MNALSLHSLHLGHHHSEGHIKRPMNAFMVWSRGQRRK 61
M+A S L L H E + P + + +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTA---SFFIASQLQ 34
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell
surface, cell adhesion; 2.70A {Campylobacter jejuni
subsp}
Length = 379
Score = 24.8 bits (53), Expect = 6.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 5 LGLHSLHLGHHHSEGHI 21
+G H H HHHS GHI
Sbjct: 1 MGHHHHHHHHHHSSGHI 17
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL;
1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Length = 720
Score = 24.6 bits (53), Expect = 7.9
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 24 PMNALSLHSLHLGHHHSEGHIKRPMNAFMVWSRGQRR 60
+ + G H E +++R + G RR
Sbjct: 186 VQGEFDVLRFY-GKHAMERNLERTPLGHGTIAFGSRR 221
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 24.4 bits (52), Expect = 8.9
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 20 HIKRPMNALSLHSLHLGHHHSEGHIKRPMNAFMVWSRGQRRKMALD 65
+ RP N + + H H+ H KR R++
Sbjct: 200 QVTRPQNIKTGTNDTFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKT 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.415
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,639,196
Number of extensions: 81208
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 59
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)