RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15636
(101 letters)
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 72.9 bits (179), Expect = 2e-19
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
HIKRPMNAFMVW++ +RRK+ P MHNS ISK LG+ WK +T +EK+P+ +E RL
Sbjct: 2 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLS 60
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 72.5 bits (178), Expect = 4e-19
Identities = 53/59 (89%), Positives = 56/59 (94%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
+KRPMNAFMVWSRGQRRKMA +NPKMHNSEISKRLGAEWKLL+E EKRPFIDEAKRLR
Sbjct: 2 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 71.8 bits (176), Expect = 8e-19
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 41 EGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRL 100
+ +KRPMNAF+VWSR QRRKMAL+NP+M NSEISK+LG +WK+LTE EK PF EA++L
Sbjct: 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61
Query: 101 R 101
+
Sbjct: 62 Q 62
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 68.4 bits (167), Expect = 2e-17
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
HIK+P+NAFM++ + R + ++ ++ I++ LG W L+ E+ + + A++ R
Sbjct: 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKER 60
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 67.2 bits (164), Expect = 5e-17
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
KRP +AF ++ R K+ ++P + +++K+LG W +K+P+ +A +L+
Sbjct: 4 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 60
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 66.5 bits (162), Expect = 1e-16
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKR 99
KRP++A ++S +RR++ + P++ SE+++ L W L+E +K +
Sbjct: 17 GSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAA 76
Query: 100 LR 101
L+
Sbjct: 77 LK 78
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 63.0 bits (153), Expect = 3e-15
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 42 GHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
KR ++A+M ++ R + +NP + ++ K+LG +WK LT EK+P+ +A+ +
Sbjct: 19 NAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADK 78
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 63.0 bits (153), Expect = 3e-15
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 40 SEGHIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKR 99
S G K PMN + +S+ L++ + E +G+ W+ +++ +K + A+
Sbjct: 5 SSGPKKPPMNGYQKFSQELLSNGELNHLPL--KERMVEIGSRWQRISQSQKEHYKKLAEE 62
Query: 100 LR 101
+
Sbjct: 63 QQ 64
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 60.2 bits (146), Expect = 2e-14
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
KRP++A+M+W R + +NP + +E++KR G W+ + +K + +A + +
Sbjct: 5 KRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAK 59
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 59.9 bits (145), Expect = 3e-14
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNP--KMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
+ M+++ + + R + +P ++ SE SK+ WK ++ EK F D AK +
Sbjct: 3 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 61
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 59.6 bits (144), Expect = 7e-14
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 43 HIKRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
K+P+ + + +R K A +P+M N +++K L ++K L E +K +I + +R +
Sbjct: 10 FPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREK 68
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 56.9 bits (137), Expect = 1e-12
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 45 KRPMNAFMVWSRGQRRKMALDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
K P N++ ++ M + ++E +WKLL++ EK + + + +
Sbjct: 19 KPPPNSYSLYCAELMANM----KDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKK 71
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 99
Score = 22.9 bits (49), Expect = 7.0
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 64 LDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLR 101
LD+P + N ++ ++L A + E+ P + KR R
Sbjct: 43 LDDPLLENKDLEEKLQAFLDYVKEIPNLP--EARKRYR 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.415
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,531
Number of extensions: 15358
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 17
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)