RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15639
(135 letters)
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 38.2 bits (88), Expect = 5e-05
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 12 NCRVCLKSFKP-DDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ 69
C +C + S VC +C + VC C + N+ W C IC + + +
Sbjct: 50 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN--NRPHPVWLCKICLEQREVWKR 106
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 32.3 bits (73), Expect = 0.003
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ 65
NC C K F C +C C +C++ + L + + C C LQ
Sbjct: 10 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQ 63
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 31.5 bits (71), Expect = 0.005
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRK 63
G C C +S+ D++ C C C + + ++C C K
Sbjct: 7 GQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQ-YKCPSCSNK 58
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein
19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 30.8 bits (69), Expect = 0.016
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWR-CSICRRKLQSRAQP 70
C C F C C + C C S+S L + C C L +
Sbjct: 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSSD 70
Query: 71 VLSQNS 76
S+ S
Sbjct: 71 NASKWS 76
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 29.6 bits (66), Expect = 0.026
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYS-KLDENQDENTWR-CSICRRKLQ 65
C +C K F + C C C++ +S S L + R C C +
Sbjct: 7 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYE 62
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 29.4 bits (65), Expect = 0.032
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 13 CRVCLKSF-KPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR 67
C C + + + C +CE C +D C C L+
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHTLCESC-----VDLLFVRGAGNCPECGTPLRKS 56
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 29.2 bits (65), Expect = 0.040
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCAS-YSKLDENQDENTWR-CSICRRKLQ 65
C C F + C C Q C C + L + E R C C LQ
Sbjct: 15 VCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQ 70
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 28.7 bits (64), Expect = 0.049
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 13 CRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
C VCL + + +R C +C +D ++ C +CR +
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAEC-----VDMWLGSHS-TCPLCRLTV 53
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 28.9 bits (64), Expect = 0.060
Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 13 CRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR 67
+C + + + + C C C + + + + C C
Sbjct: 14 YCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDI-YHCPDCEAVFGPS 67
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 28.1 bits (62), Expect = 0.074
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 13 CRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
C +C++ + DD + C ++C C + + C CR+
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFC-----WHRIRTDENGLCPACRKPY 49
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 26.3 bits (58), Expect = 0.40
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 1 PKSDKPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASY 43
P + R C C K D + VC C C DC +
Sbjct: 8 PLEEYNGER--FCYGCQGELK-DQHVYVCAVCQNVFCVDCDVF 47
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 25.7 bits (56), Expect = 0.51
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRR 62
+C+ C F + C +C + C C+S C +C+R
Sbjct: 2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ------VGNGPRLCLLCQR 46
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 25.0 bits (54), Expect = 1.5
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 13 CRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR 67
C++C ++ K C +C C L Q+ C CR +++
Sbjct: 26 CKICAENDK----DVKIEPCGHLMCTSC-----LTSWQESEGQGCPFCRCEIKGT 71
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId:
83374]}
Length = 328
Score = 25.9 bits (57), Expect = 1.8
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 22 PDDYSRVCYECHQKVCEDCASYSKLDENQDENTW-----RCSICRRKLQSRAQ 69
+Y RV YE + + K DEN + + R + +
Sbjct: 33 GKNYGRVVYEA----LKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASA 81
>d1pzwa_ g.39.1.10 (A:) Transcription factor grauzone Cg33133-Pa,
zinc finger associated domain {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 80
Score = 24.3 bits (52), Expect = 2.9
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 13 CRVCLKSFKPDDYSRVCYECHQ------KVCEDCASYSKLDENQDENTWRCSICRRKLQS 66
CR+CL+ ++ +V + ++ N + + C++C ++
Sbjct: 3 CRLCLRGVSGAQMCLQIFDVDSGESKVAEVLRQHFWF-EVLPNDEISKVICNVCWTQVSE 61
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 23.8 bits (51), Expect = 3.0
Identities = 9/60 (15%), Positives = 13/60 (21%), Gaps = 3/60 (5%)
Query: 6 PAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ 65
P + C + C C C + + E W C C
Sbjct: 2 PLGSDHHMEFCRVCKDGGELL-CCDTCPSSYHIHCLNPPLPEIPNGE--WLCPRCTCPAL 58
>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 293
Score = 25.2 bits (55), Expect = 3.0
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 85 VLEALQRRHSDVKIGSANSGAHPANQ-GLAPPRSPELRRHSDVSPASLKE 133
+L AL +HS A G PA P P L +HS + E
Sbjct: 98 LLRALLLKHSHAGELEALGGVKPAVLTRSGDPSQPLLPQHSSLETQLFCE 147
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 24.3 bits (52), Expect = 3.8
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQPV 71
C +CL+ K V +C C+ C NQ + +C +C+ + R+
Sbjct: 23 ECPICLELIK----EPVSTKCDHIFCKFCMLKLL---NQKKGPSQCPLCKNDITKRS--- 72
Query: 72 LSQNSTDSLLDVPVLEALQRRHSDVKIGSAN 102
L +++ S L +L+ + D + AN
Sbjct: 73 LQESTRFSQLVEELLKIICAFQLDTGLEYAN 103
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 24.0 bits (51), Expect = 4.3
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 13 CRVCLKSFKPDDYSRV-CYECHQKVCEDCAS--YSKLDENQDENTWRCSICRRKLQSRAQ 69
C VC + V C ECH +DC + + N W C+ C R+++ AQ
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465
{Synechococcus sp. [TaxId: 1131]}
Length = 170
Score = 24.3 bits (52), Expect = 5.2
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ 69
LG RV + F P+ + V E + E S L R ++ +
Sbjct: 16 LGTDRVKVYRFDPEGHGTVVAEA--RGGERLPSL--LGLTFPAGDIPEEARRLFRLAQVR 71
Query: 70 PVLSQNSTDSLLDVPVLEALQRRHS 94
++ + + P L R
Sbjct: 72 VIVDVEAQSRSISQPESWGLSARVP 96
>d1oz7a_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Saw-scaled
viper (Echis carinatus), echicetin [TaxId: 40353]}
Length = 131
Score = 23.9 bits (50), Expect = 5.6
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 5/54 (9%)
Query: 16 CLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCS-----ICRRKL 64
S + D S +C K + C +C+ +
Sbjct: 76 QHCSSRWSDGSFFRSYEIAIRYSECFVLEKQSVFRTWVATPCENTFPFMCKYPV 129
>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlorobium tepidum [TaxId:
1097]}
Length = 283
Score = 24.4 bits (53), Expect = 6.2
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 22 PDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRR 62
P +++ + Y+ +K DE + TW SI R
Sbjct: 34 PGEFAEIAYQS----WLGGLDIAKDDEMLADVTW-SSIEER 69
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 24.3 bits (51), Expect = 6.9
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 12 NCRVCLKSFKP--DDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ 69
C ++F+ + + + +SK ++ D N + CS CR + S +
Sbjct: 177 TCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKK 236
Query: 70 PVLSQ 74
+ +
Sbjct: 237 IEIWK 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.395
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,412
Number of extensions: 20129
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 60
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.6 bits)