BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15646
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|D Chain D, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 134
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
Query: 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVR 221
F+P++PLPD++ V TGEE+E F RAKL+RF KEWKERG+G +K+L++K +GK+R
Sbjct: 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIR 61
Query: 222 LLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDA 281
LLMRR+ V KICANH++ DM+L P + ++++W A DYADE+ EQL +FK PE+A
Sbjct: 62 LLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEA 121
Query: 282 ERFRS 286
F+
Sbjct: 122 ALFKC 126
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 287 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 344
V TGEE+E F RAKL+RF KEWKERG+G +K+L++K +GK+RLLMRR+ V KIC
Sbjct: 14 VKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKIC 73
Query: 345 ANHFLHQDMELKPMSNTKQAYIWFAQDYADEV 376
ANH++ DM+L P + + ++++W A DYADE+
Sbjct: 74 ANHYISPDMKLTPNAGSDRSFVWHALDYADEL 105
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|E Chain E, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|H Chain H, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|K Chain K, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|B Chain B, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|E Chain E, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|H Chain H, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|K Chain K, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 201
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 8/152 (5%)
Query: 140 KQSLEQANESDDETPANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDK 199
K + E + S + T ++HDP F+PI+ LP E + T EE+E LF+ RAKL+RF +
Sbjct: 5 KDTHEDHDTSTENTDESNHDP--QFEPIVSLP-EQEIKTLEEDEEELFKMRAKLFRFASE 61
Query: 200 ----EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYI 255
EWKERG G +KLLK+K+ G +RLLMRRD KICANH++ MELKP + +A++
Sbjct: 62 NDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWV 121
Query: 256 WFAQ-DYADEVVSDEQLCAKFKLPEDAERFRS 286
W D+ADE E L +F E+A++F++
Sbjct: 122 WNTHADFADECPKPELLAIRFLNAENAQKFKT 153
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 10/119 (8%)
Query: 263 DEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFVDK----EWKERGVG 318
DE D Q LPE + + T EE+E LF+ RAKL+RF + EWKERG G
Sbjct: 19 DESNHDPQFEPIVSLPE-----QEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTG 73
Query: 319 QLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQ-DYADEV 376
+KLLK+K+ G +RLLMRRD KICANH++ MELKP + + +A++W D+ADE
Sbjct: 74 DVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADEC 132
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From
Human Ranbp2
Length = 130
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
Query: 178 TGEENETVLFEQRAKLYRFVDKE---WKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICA 234
+GEE+E VL+ QR KL+RF D E WKERG+G LK+LKN+ GK+R+LMRR+ V K+CA
Sbjct: 2 SGEEDEKVLYSQRVKLFRF-DAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCA 60
Query: 235 NHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFR 285
NH++ M LKP+ + +A++W A D++D EQL AKFK PE AE F+
Sbjct: 61 NHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFK 111
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 68/89 (76%), Gaps = 4/89 (4%)
Query: 289 TGEENETVLFEQRAKLYRFVDKE---WKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICA 345
+GEE+E VL+ QR KL+RF D E WKERG+G LK+LKN+ GK+R+LMRR+ V K+CA
Sbjct: 2 SGEEDEKVLYSQRVKLFRF-DAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCA 60
Query: 346 NHFLHQDMELKPMSNTKQAYIWFAQDYAD 374
NH++ M LKP+S + +A++W A D++D
Sbjct: 61 NHWITTTMNLKPLSGSDRAWMWLASDFSD 89
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
Length = 140
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVR 221
F+P++ L ++V V T EE+E VL++ RAKL+RF KEWKERG G K LKNK T KVR
Sbjct: 4 FEPVVHL-EKVDVKTAEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVR 62
Query: 222 LLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFA-QDYADEVVSDEQLCAKFKLPED 280
+LMRRD KICANH + + LKP + +++++ D A+ +F E+
Sbjct: 63 ILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKEN 122
Query: 281 AERFR 285
A++F+
Sbjct: 123 ADKFK 127
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 287 VTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 344
V T EE+E VL++ RAKL+RF KEWKERG G K LKNK T KVR+LMRRD KIC
Sbjct: 15 VKTAEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKIC 74
Query: 345 ANHFLHQDMELKPMSNTKQAYIW 367
ANH + + LKP + +++++
Sbjct: 75 ANHIIAPEYTLKPNVGSDRSWVY 97
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 191
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 134 ETSPLIKQSLEQANESDDETPANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKL 193
ET + + E+ + D+ P + P F+P++ L ++V V T EE+E VL++ RAKL
Sbjct: 28 ETKKDEEDTKEETKKEGDDAPES---PDIHFEPVVHL-EKVDVKTMEEDEEVLYKVRAKL 83
Query: 194 YRF-VD-KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTK 251
+RF D KEWKERG G K LKNK T KVR+LMRRD KICANH + + LKP +
Sbjct: 84 FRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSD 143
Query: 252 QAYIWFA-QDYADEVVSDEQLCAKFKLPEDAERFR 285
+++++ D A+ +F E+A++F+
Sbjct: 144 RSWVYACTADIAEGEAEAFTFAIRFGSKENADKFK 178
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 287 VTTGEENETVLFEQRAKLYRF-VD-KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 344
V T EE+E VL++ RAKL+RF D KEWKERG G K LKNK T KVR+LMRRD KIC
Sbjct: 66 VKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKIC 125
Query: 345 ANHFLHQDMELKPMSNTKQAYIW 367
ANH + + LKP + +++++
Sbjct: 126 ANHIIAPEYTLKPNVGSDRSWVY 148
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 141
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRF-VD-KEWKERGVGQLKLLKNKDTGKVR 221
F+P++ L ++V V T EE+E VL++ RAKL+RF D KEWKERG G K LKNK T KVR
Sbjct: 5 FEPVVHL-EKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVR 63
Query: 222 LLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFA-QDYADEVVSDEQLCAKFKLPED 280
+LMRRD KICANH + + LKP + +++++ D A+ +F E+
Sbjct: 64 ILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKEN 123
Query: 281 AERFR 285
A++F+
Sbjct: 124 ADKFK 128
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 287 VTTGEENETVLFEQRAKLYRF-VD-KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 344
V T EE+E VL++ RAKL+RF D KEWKERG G K LKNK T KVR+LMRRD KIC
Sbjct: 16 VKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKIC 75
Query: 345 ANHFLHQDMELKPMSNTKQAYIW 367
ANH + + LKP + +++++
Sbjct: 76 ANHIIAPEYTLKPNVGSDRSWVY 98
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|B Chain B, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|B Chain B, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|B Chain B, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 140
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVR 221
F+P++ L ++V V T EE+E VL++ RAKL+RF KEWKERG G K LKNK T KVR
Sbjct: 4 FEPVVHL-EKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVR 62
Query: 222 LLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFA-QDYADEVVSDEQLCAKFKLPED 280
+LMRRD KICANH + + LKP + +++++ D A+ +F E+
Sbjct: 63 ILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKEN 122
Query: 281 AERFR 285
A++F+
Sbjct: 123 ADKFK 127
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 287 VTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 344
V T EE+E VL++ RAKL+RF KEWKERG G K LKNK T KVR+LMRRD KIC
Sbjct: 15 VKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKIC 74
Query: 345 ANHFLHQDMELKPMSNTKQAYIW 367
ANH + + LKP + +++++
Sbjct: 75 ANHIIAPEYTLKPNVGSDRSWVY 97
>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
pdb|3N7C|B Chain B, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 286 SVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHK 342
S+T GEENE VLF ++AKL F K + RGVG+LKLL+ K D GKVR+L R +
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGXGH 61
Query: 343 ICANHFLHQDMELKPM 358
+ N + + + +P+
Sbjct: 62 VLLNTSVVKSFKYQPI 77
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 175 PVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHK 231
+T GEENE VLF ++AKL F K + RGVG+LKLL+ K D GKVR+L R +
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGXGH 61
Query: 232 ICANHFLHQDMELKPM 247
+ N + + + +P+
Sbjct: 62 VLLNTSVVKSFKYQPI 77
>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 286 SVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHK 342
S+T GEENE VLF ++AKL F K + RGVG+LKLL+ K D GKVR+L R +
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLXRSEGXGH 61
Query: 343 ICANHFLHQDMELKPM 358
+ N + + + +P+
Sbjct: 62 VLLNTSVVKSFKYQPI 77
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 175 PVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHK 231
+T GEENE VLF ++AKL F K + RGVG+LKLL+ K D GKVR+L R +
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLXRSEGXGH 61
Query: 232 ICANHFLHQDMELKPM 247
+ N + + + +P+
Sbjct: 62 VLLNTSVVKSFKYQPI 77
>pdb|2CRF|A Chain A, Solution Structure Of The Ran_bp1 Domain Of Ran-Binding
Protein-3
Length = 150
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 170 LPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLL 223
L ++V V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+
Sbjct: 13 LLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLV 72
Query: 224 MRRDIVHKICANHFLHQDMEL 244
MR ++ N L M++
Sbjct: 73 MRTQGSLRLILNTKLWAQMQI 93
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 287 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDIV 340
V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+MR
Sbjct: 19 VITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGS 78
Query: 341 HKICANHFLHQDMELKPMSNTKQAYIWFAQDYADEVV 377
++ N L M++ S K +I A D D+ V
Sbjct: 79 LRLILNTKLWAQMQIDKASE-KSIHI-TAMDTEDQGV 113
>pdb|2Y8F|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|C Chain C, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|D Chain D, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
Length = 138
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 173 EVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRR 226
+V V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+MR
Sbjct: 4 KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 227 DIVHKICANHFLHQDMEL 244
++ N L M++
Sbjct: 64 QGSLRLILNTKLWAQMQI 81
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 287 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDIV 340
V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+MR
Sbjct: 7 VITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGS 66
Query: 341 HKICANHFLHQDMELKPMS 359
++ N L M++ S
Sbjct: 67 LRLILNTKLWAQMQIDKAS 85
>pdb|2EC1|A Chain A, Solution Structure Of The Ranbd1 Domain From Human
Nucleoporin 50 Kda
Length = 125
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 286 SVTTGE-ENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRD 338
S ++GE + E + ++ KL+ D E+KE+G+G L LK K +LL+R D
Sbjct: 3 SGSSGEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLH-LKPTANQKTQLLVRAD 55
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 177 TTGE-ENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRD 227
++GE + E + ++ KL+ D E+KE+G+G L LK K +LL+R D
Sbjct: 5 SSGEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLH-LKPTANQKTQLLVRAD 55
>pdb|2Y8G|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
pdb|2Y8G|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
Length = 138
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 173 EVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRR 226
+V V TGEE E+ + + + KL+ F + W G G L+L + + D G + RL+MR
Sbjct: 4 KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 227 DIVHKICANHFLHQDMEL 244
++ N L M++
Sbjct: 64 QGSLRLILNTKLWAQMQI 81
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 287 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDIV 340
V TGEE E+ + + + KL+ F + W G G L+L + + D G + RL+MR
Sbjct: 7 VITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGS 66
Query: 341 HKICANHFLHQDMELKPMS 359
++ N L M++ S
Sbjct: 67 LRLILNTKLWAQMQIDKAS 85
>pdb|1A8Z|A Chain A, Structure Determination Of A 16.8kda Copper Protein
Rusticyanin At 2.1a Resolution Using Anomalous
Scattering Data With Direct Methods
Length = 153
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 197 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 234
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 1 LDTSWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAA 41
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 308 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 345
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 1 LDTSWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAA 41
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 197 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 234
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 43
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 308 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 345
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 43
>pdb|2CAK|A Chain A, 1.27angstrom Structure Of Rusticyanin From Thiobacillus
Ferrooxidans
Length = 154
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 197 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 234
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 2 LDTTWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAA 42
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 308 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 345
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 2 LDTTWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAA 42
>pdb|1GY2|A Chain A, Crystal Structure Of Met148leu Rusticyanin
pdb|1GY2|B Chain B, Crystal Structure Of Met148leu Rusticyanin
Length = 155
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 197 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 234
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 43
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 308 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 345
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 43
>pdb|1CUR|A Chain A, Reduced Rusticyanin, Nmr
Length = 155
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 197 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 234
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 43
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 308 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 345
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 43
>pdb|1GY1|A Chain A, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
pdb|1GY1|B Chain B, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
Length = 155
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 197 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 234
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAA 43
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 308 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 345
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAA 43
>pdb|2CAL|A Chain A, Crystal Structure Of His143met Rusticyanin
Length = 154
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 197 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 234
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 2 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 42
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 308 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 345
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 2 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 42
>pdb|3NO0|A Chain A, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
pdb|3NO0|B Chain B, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
pdb|3NO0|C Chain C, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
Length = 276
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 275 FKLPEDAERFRSVTTGEENETVLFEQRAKLYRFVDKEW-----KERGVGQLKLLKNKDTG 329
KL E E ++ +E +LF ++ ++ RF +E RGV +KL KN +T
Sbjct: 110 IKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETS 169
Query: 330 KVRL 333
+R+
Sbjct: 170 GLRI 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,291,971
Number of Sequences: 62578
Number of extensions: 480784
Number of successful extensions: 861
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 46
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)