Query psy15646
Match_columns 388
No_of_seqs 265 out of 768
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:59:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00160 RanBD Ran-binding d 100.0 5.4E-38 1.2E-42 274.4 14.1 123 164-287 1-126 (130)
2 cd00835 RanBD Ran-binding doma 100.0 1.6E-35 3.5E-40 255.1 14.0 113 174-286 1-115 (122)
3 PF00638 Ran_BP1: RanBP1 domai 100.0 1E-34 2.2E-39 248.6 13.7 112 175-286 1-114 (122)
4 COG5171 YRB1 Ran GTPase-activa 100.0 1E-35 2.2E-40 268.8 4.4 130 156-286 63-195 (211)
5 cd00835 RanBD Ran-binding doma 100.0 6.3E-30 1.4E-34 220.3 9.5 98 286-383 2-106 (122)
6 smart00160 RanBD Ran-binding d 100.0 3.8E-29 8.3E-34 218.7 9.3 102 285-386 10-120 (130)
7 PF00638 Ran_BP1: RanBP1 domai 100.0 2.3E-28 5E-33 209.4 11.5 98 286-383 1-105 (122)
8 COG5171 YRB1 Ran GTPase-activa 99.9 5.5E-28 1.2E-32 218.7 2.8 103 285-387 80-191 (211)
9 KOG0864|consensus 99.9 3.4E-26 7.4E-31 215.5 -0.6 168 157-325 31-210 (215)
10 KOG2724|consensus 99.7 1.3E-17 2.8E-22 168.2 14.4 109 173-286 371-480 (487)
11 KOG0864|consensus 99.7 1E-17 2.2E-22 158.1 1.2 115 268-383 31-155 (215)
12 KOG0866|consensus 99.4 9.2E-14 2E-18 136.8 -0.3 144 172-346 145-296 (327)
13 KOG2724|consensus 99.1 4.9E-11 1.1E-15 121.0 3.1 95 289-384 375-473 (487)
14 cd00837 EVH1 EVH1 (Enabled, Va 99.0 3.1E-09 6.8E-14 89.8 12.0 94 183-286 1-98 (104)
15 cd00837 EVH1 EVH1 (Enabled, Va 98.8 2.3E-08 4.9E-13 84.5 8.4 89 294-384 1-99 (104)
16 KOG0866|consensus 98.5 3.1E-08 6.8E-13 98.1 0.1 87 286-374 148-240 (327)
17 PF00568 WH1: WH1 domain; Int 98.2 2.4E-05 5.3E-10 66.6 11.9 94 183-286 8-105 (111)
18 cd01207 Ena-Vasp Enabled-VASP- 98.1 3.1E-05 6.7E-10 66.9 9.6 94 183-286 1-101 (111)
19 cd01206 Homer Homer type EVH1 97.8 7.5E-05 1.6E-09 64.2 8.0 94 183-286 3-101 (111)
20 PF00568 WH1: WH1 domain; Int 97.8 0.00018 3.9E-09 61.3 9.3 85 295-381 9-103 (111)
21 cd01207 Ena-Vasp Enabled-VASP- 97.7 0.00016 3.4E-09 62.5 8.0 87 294-382 1-100 (111)
22 cd01206 Homer Homer type EVH1 97.2 0.00089 1.9E-08 57.7 6.2 84 294-381 3-99 (111)
23 smart00461 WH1 WASP homology r 96.5 0.036 7.8E-07 47.1 10.9 93 183-286 3-100 (106)
24 smart00461 WH1 WASP homology r 96.3 0.018 3.8E-07 49.0 7.7 88 294-384 3-101 (106)
25 PF08553 VID27: VID27 cytoplas 93.1 1 2.2E-05 50.7 12.2 101 178-285 242-345 (794)
26 KOG4590|consensus 81.6 1.4 3.1E-05 46.0 3.6 81 195-285 2-90 (409)
27 cd01205 WASP WASP-type EVH1 do 75.2 54 0.0012 28.3 11.7 89 185-286 6-99 (105)
28 KOG3671|consensus 70.5 4.9 0.00011 43.1 3.9 98 176-286 20-133 (569)
29 PF06058 DCP1: Dcp1-like decap 67.2 20 0.00044 31.4 6.6 64 300-368 27-94 (122)
30 cd01205 WASP WASP-type EVH1 do 61.9 68 0.0015 27.7 8.6 84 295-382 5-98 (105)
31 COG5167 VID27 Protein involved 47.0 1E+02 0.0022 34.0 8.8 95 184-285 229-325 (776)
32 KOG3671|consensus 44.4 15 0.00032 39.7 2.2 83 296-382 39-132 (569)
33 PF06058 DCP1: Dcp1-like decap 40.1 2.6E+02 0.0055 24.5 11.1 89 184-284 21-114 (122)
34 PRK15491 replication factor A; 36.3 4.2E+02 0.0092 27.5 11.3 45 185-230 68-117 (374)
35 PF07933 DUF1681: Protein of u 31.6 2.1E+02 0.0046 26.5 7.3 100 183-285 3-115 (160)
36 PF08553 VID27: VID27 cytoplas 30.0 2.6E+02 0.0056 32.2 9.1 74 291-368 244-320 (794)
37 KOG4590|consensus 26.6 74 0.0016 33.6 3.9 57 309-367 7-69 (409)
38 PF09200 Monellin: Monellin; 25.4 33 0.00072 24.9 0.7 25 300-324 14-39 (43)
39 KOG3091|consensus 24.3 3.5E+02 0.0076 29.5 8.3 115 10-130 3-133 (508)
40 KOG2057|consensus 22.6 2.1E+02 0.0045 29.9 6.0 14 37-50 343-356 (499)
No 1
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=5.4e-38 Score=274.39 Aligned_cols=123 Identities=54% Similarity=0.979 Sum_probs=117.5
Q ss_pred ceeccCCCCccccccCccccEEEEEEeeeEEeecc--cccceeeeEEEEEEEeCCC-CcEEEEEEeCCeeeeEeccccCc
Q psy15646 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDT-GKVRLLMRRDIVHKICANHFLHQ 240 (388)
Q Consensus 164 f~Piv~LP~~vev~TGEEdEe~lF~~RaKLyrf~~--k~WKERGvG~LKIlk~k~t-gk~RLLMRrdqv~KV~lN~~I~~ 240 (388)
|+||++||+ |||+||||||++||+.|||||+|++ ++|+|||+|+||||+++++ +++|||||+|+++||||||+|++
T Consensus 1 ~~~~~~l~~-ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~ 79 (130)
T smart00160 1 FKPVVPLPD-VEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFK 79 (130)
T ss_pred CCCcccCcc-ccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecC
Confidence 789999996 9999999999999999999999985 7999999999999999999 89999999999999999999999
Q ss_pred CceEeecCCCCcEEEEEeecCCccccccceeeeecCChhhHHhhccc
Q psy15646 241 DMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSV 287 (388)
Q Consensus 241 ~M~~~~~~~s~ks~~w~a~D~aDee~k~et~~IRFKt~e~A~eFksV 287 (388)
+|+++++.++.++|+|.+.|++|++.++++|+|||+++++|++|..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~ 126 (130)
T smart00160 80 SMTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNI 126 (130)
T ss_pred CcEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHH
Confidence 99999988888999999999999999999999999999999999753
No 2
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=1.6e-35 Score=255.07 Aligned_cols=113 Identities=56% Similarity=0.916 Sum_probs=108.6
Q ss_pred cccccCccccEEEEEEeeeEEeecc--cccceeeeEEEEEEEeCCCCcEEEEEEeCCeeeeEeccccCcCceEeecCCCC
Q psy15646 174 VPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTK 251 (388)
Q Consensus 174 vev~TGEEdEe~lF~~RaKLyrf~~--k~WKERGvG~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ 251 (388)
|||+||||||++||+.|||||+|++ ++|+|||+|+|||+++++++++|||||+|+++||||||+|+++|+++++.+++
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~ 80 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSD 80 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCC
Confidence 5899999999999999999999987 89999999999999999999999999999999999999999999999988778
Q ss_pred cEEEEEeecCCccccccceeeeecCChhhHHhhcc
Q psy15646 252 QAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 252 ks~~w~a~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
++|+|.+.|++|++.++++|+|||+++++|++|.+
T Consensus 81 k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~ 115 (122)
T cd00835 81 KSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKE 115 (122)
T ss_pred cEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHH
Confidence 99999999999888899999999999999999975
No 3
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=100.00 E-value=1e-34 Score=248.64 Aligned_cols=112 Identities=54% Similarity=0.871 Sum_probs=104.0
Q ss_pred ccccCccccEEEEEEeeeEEeecc--cccceeeeEEEEEEEeCCCCcEEEEEEeCCeeeeEeccccCcCceEeecCCCCc
Q psy15646 175 PVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQ 252 (388)
Q Consensus 175 ev~TGEEdEe~lF~~RaKLyrf~~--k~WKERGvG~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~k 252 (388)
||+||||||++||+.|||||+|+. ++|+|||+|.|||+++++++++|||||+|++++|||||+|+++|+++++.++++
T Consensus 1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~ 80 (122)
T PF00638_consen 1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEK 80 (122)
T ss_dssp CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTT
T ss_pred CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCc
Confidence 689999999999999999999975 799999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEeecCCccccccceeeeecCChhhHHhhcc
Q psy15646 253 AYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 253 s~~w~a~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
+++|++.|++|+++++++|+|||+++++|++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~ 114 (122)
T PF00638_consen 81 SLVWTAIDYADEEGKPETYLIRFKSAEDADEFKK 114 (122)
T ss_dssp EEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHH
T ss_pred EEEEEeccccCCCCceEEEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999975
No 4
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-35 Score=268.78 Aligned_cols=130 Identities=40% Similarity=0.787 Sum_probs=122.8
Q ss_pred CCCCCCCCceeccCCCCccccccCccccEEEEEEeeeEEeecc--cccceeeeEEEEEEEeCCCCcEEEEEEeCCeeeeE
Q psy15646 156 NDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 233 (388)
Q Consensus 156 ee~~~~~~f~Piv~LP~~vev~TGEEdEe~lF~~RaKLyrf~~--k~WKERGvG~LKIlk~k~tgk~RLLMRrdqv~KV~ 233 (388)
++..|..||+|||.| +.|+++|-||||.+||.+|||||||+. ++|+|||.|+++||+|+.+++.||+||||+++|||
T Consensus 63 ~pesp~ihfepvV~l-~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklc 141 (211)
T COG5171 63 GPESPNIHFEPVVEL-QRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLC 141 (211)
T ss_pred CCCCCCcchHHHHHH-HhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhh
Confidence 445556699999999 579999999999999999999999986 89999999999999999999999999999999999
Q ss_pred eccccCcCceEeecCCCCcEEEEEe-ecCCccccccceeeeecCChhhHHhhcc
Q psy15646 234 ANHFLHQDMELKPMPNTKQAYIWFA-QDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 234 lN~~I~~~M~~~~~~~s~ks~~w~a-~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
|||.|.|.|+++|+.+++++|+|++ .|.++++.+.++|+|||-+.|+|+.|++
T Consensus 142 aNH~i~Pe~kl~PnvgsdrsWvw~~taD~~Egea~a~tFairF~s~Ena~~FkE 195 (211)
T COG5171 142 ANHFINPEFKLQPNVGSDRSWVWMSTADTVEGEAKAQTFAIRFYSEENAKRFKE 195 (211)
T ss_pred hhhccCcceeccCCCCcccceEEEeecccccCcceeeEEEEeeccHHHHHHHHH
Confidence 9999999999999999999999975 6999999999999999999999999986
No 5
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=99.96 E-value=6.3e-30 Score=220.34 Aligned_cols=98 Identities=59% Similarity=0.996 Sum_probs=90.6
Q ss_pred cccccccccceeeeeeeeeeeecc--ccceeecceeEEEEEcCCCCcEEEEEEeCCCCcEEEceecCCCCeeeecCCCCc
Q psy15646 286 SVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQ 363 (388)
Q Consensus 286 sV~tGEEdEe~lf~~RaKL~r~d~--~~WkERGvG~LkIl~~k~t~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k 363 (388)
+|.+|||||++||+.|||||+|++ ++|+|||+|+|||+++++++++|||||+|+++||||||+|+++|+++++.++++
T Consensus 2 ~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~k 81 (122)
T cd00835 2 EVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSDK 81 (122)
T ss_pred CcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCCc
Confidence 578999999999999999999985 899999999999999999999999999999999999999999999999887799
Q ss_pred EEEEEeeecCcc--cccc---ccCC
Q psy15646 364 AYIWFAQDYADE--VVSD---RFDS 383 (388)
Q Consensus 364 ~~~w~a~D~sdg--~~~~---~f~~ 383 (388)
+|+|++.|++|+ .+.. ||+.
T Consensus 82 ~~~~~~~d~~~~~~~~~~~~lrfk~ 106 (122)
T cd00835 82 SIVWAAMDFSDDEPKPETFAIRFKT 106 (122)
T ss_pred EEEEEeeecCCCCCcEEEEEEEECC
Confidence 999999999984 4333 8873
No 6
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=99.96 E-value=3.8e-29 Score=218.65 Aligned_cols=102 Identities=54% Similarity=0.945 Sum_probs=92.8
Q ss_pred ccccccccccceeeeeeeeeeeec--cccceeecceeEEEEEcCCC-CcEEEEEEeCCCCcEEEceecCCCCeeeecCCC
Q psy15646 285 RSVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDT-GKVRLLMRRDIVHKICANHFLHQDMELKPMSNT 361 (388)
Q Consensus 285 ksV~tGEEdEe~lf~~RaKL~r~d--~~~WkERGvG~LkIl~~k~t-~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~ 361 (388)
.+|++|||+|++||++|||||+|+ +++|+|||+|+||||+++++ +++|||||+|+++||||||+|+++|++++++++
T Consensus 10 ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~~~~ 89 (130)
T smart00160 10 VEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMTLKPLAGS 89 (130)
T ss_pred ccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcEEeecCCC
Confidence 468999999999999999999998 57999999999999999999 899999999999999999999999999999888
Q ss_pred CcEEEEEeeecCcccccc-----ccCC-CCC
Q psy15646 362 KQAYIWFAQDYADEVVSD-----RFDS-GNC 386 (388)
Q Consensus 362 ~k~~~w~a~D~sdg~~~~-----~f~~-~~~ 386 (388)
.++|+|.+.|++|++... ||+. ++|
T Consensus 90 ~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a 120 (130)
T smart00160 90 NRALKWTPEDFADDIPKLVLYAVRFKTKEEA 120 (130)
T ss_pred cceEEEeeeecCCCCCceEEEEEEeCCHHHH
Confidence 899999999999975432 8883 443
No 7
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=99.95 E-value=2.3e-28 Score=209.37 Aligned_cols=98 Identities=59% Similarity=0.949 Sum_probs=86.7
Q ss_pred cccccccccceeeeeeeeeeeec--cccceeecceeEEEEEcCCCCcEEEEEEeCCCCcEEEceecCCCCeeeecCCCCc
Q psy15646 286 SVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQ 363 (388)
Q Consensus 286 sV~tGEEdEe~lf~~RaKL~r~d--~~~WkERGvG~LkIl~~k~t~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k 363 (388)
+|++|||||++||+.|||||+|+ +++|+|||+|.|||++|++++++|||||+|++++|+|||.|+++|+++++..+.+
T Consensus 1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~ 80 (122)
T PF00638_consen 1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEK 80 (122)
T ss_dssp CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTT
T ss_pred CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCc
Confidence 48999999999999999999997 5799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeecCccc--ccc---ccCC
Q psy15646 364 AYIWFAQDYADEV--VSD---RFDS 383 (388)
Q Consensus 364 ~~~w~a~D~sdg~--~~~---~f~~ 383 (388)
+|+|++.|++|++ +.. ||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~irf~~ 105 (122)
T PF00638_consen 81 SLVWTAIDYADEEGKPETYLIRFKS 105 (122)
T ss_dssp EEEEEEEECTTSSSEEEEEEEE-SS
T ss_pred EEEEEeccccCCCCceEEEEEEECC
Confidence 9999999998854 333 8874
No 8
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=99.94 E-value=5.5e-28 Score=218.74 Aligned_cols=103 Identities=45% Similarity=0.804 Sum_probs=95.4
Q ss_pred ccccccccccceeeeeeeeeeeec--cccceeecceeEEEEEcCCCCcEEEEEEeCCCCcEEEceecCCCCeeeecCCCC
Q psy15646 285 RSVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTK 362 (388)
Q Consensus 285 ksV~tGEEdEe~lf~~RaKL~r~d--~~~WkERGvG~LkIl~~k~t~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~ 362 (388)
+.+++-||||.+||.+|||||||| .++|+|||.|+++||+|++|++.||+||||+++||||||+|.|.|+++|+.+++
T Consensus 80 v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklcaNH~i~Pe~kl~Pnvgsd 159 (211)
T COG5171 80 VHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCANHFINPEFKLQPNVGSD 159 (211)
T ss_pred hhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhhhhhccCcceeccCCCCcc
Confidence 358999999999999999999998 679999999999999999999999999999999999999999999999999999
Q ss_pred cEEEE-EeeecCcccccc-----ccCC-CCCC
Q psy15646 363 QAYIW-FAQDYADEVVSD-----RFDS-GNCN 387 (388)
Q Consensus 363 k~~~w-~a~D~sdg~~~~-----~f~~-~~~~ 387 (388)
++|+| ++.|.++|+... ||-+ +|++
T Consensus 160 rsWvw~~taD~~Egea~a~tFairF~s~Ena~ 191 (211)
T COG5171 160 RSWVWMSTADTVEGEAKAQTFAIRFYSEENAK 191 (211)
T ss_pred cceEEEeecccccCcceeeEEEEeeccHHHHH
Confidence 99999 599999999755 8875 6653
No 9
>KOG0864|consensus
Probab=99.91 E-value=3.4e-26 Score=215.55 Aligned_cols=168 Identities=38% Similarity=0.646 Sum_probs=147.0
Q ss_pred CCCCCCCceeccCCCCccccccCccccEEEEEEee-eEEeecc--cccceeeeEEEEEEEeCCCCcEEEEEEeCCe-eee
Q psy15646 157 DHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRA-KLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIV-HKI 232 (388)
Q Consensus 157 e~~~~~~f~Piv~LP~~vev~TGEEdEe~lF~~Ra-KLyrf~~--k~WKERGvG~LKIlk~k~tgk~RLLMRrdqv-~KV 232 (388)
++.+..+++|++.++. |+|+|+|++|..||+.|+ +||+|+. ++|+|||.|.++|++|+++|..|+|||||++ ++|
T Consensus 31 ~~~~~~~~~~~~~~~~-~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v 109 (215)
T KOG0864|consen 31 EESPAKQVEPQEELEK-VEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKV 109 (215)
T ss_pred ccCccccccccccccc-hhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhh
Confidence 4556669999999987 999999999999999997 9999976 8999999999999999999999999999999 899
Q ss_pred EeccccCcCceEeecCCCCcEEEE-EeecCCccccccceeeeecCChhh-HHhhcc----ccccccccceeeeeeeeeee
Q psy15646 233 CANHFLHQDMELKPMPNTKQAYIW-FAQDYADEVVSDEQLCAKFKLPED-AERFRS----VTTGEENETVLFEQRAKLYR 306 (388)
Q Consensus 233 ~lN~~I~~~M~~~~~~~s~ks~~w-~a~D~aDee~k~et~~IRFKt~e~-A~eFks----V~tGEEdEe~lf~~RaKL~r 306 (388)
|+||+|.+.|+++++....++|.| ++.||+++.++.++|+|||++.+. ++.|+. ++.|.+..+.-++..+..+-
T Consensus 110 ~sn~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e~s~~~f~~~~e~~~~~~~~~ek~~~~~~~~~~ 189 (215)
T KOG0864|consen 110 CSNHFIGPSFKLEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVESSGKAFKEKIEEAKEGIEENEKNQESSKNAHN 189 (215)
T ss_pred cccccccCcccccCCcccCcchhhhhhhhhcccccchhHHHHHhhhhcccchhhHhhhhhhhhhhhhhhhhhcccccccc
Confidence 999999999999999888888999 678999999999999999999988 777764 55565555555555555555
Q ss_pred ec--cccceeecceeEEEEEc
Q psy15646 307 FV--DKEWKERGVGQLKLLKN 325 (388)
Q Consensus 307 ~d--~~~WkERGvG~LkIl~~ 325 (388)
+. .+.|++||.|..++.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ 210 (215)
T KOG0864|consen 190 LEYLKGGWKERGKGEPKSNRS 210 (215)
T ss_pred chhhhhhHHhhcccccccccc
Confidence 44 88999999999998544
No 10
>KOG2724|consensus
Probab=99.75 E-value=1.3e-17 Score=168.16 Aligned_cols=109 Identities=22% Similarity=0.417 Sum_probs=91.0
Q ss_pred ccccccCccccEEEEEEeeeEEeecccccceeeeEEEEEEEeCCCCcEEEEEEeC-CeeeeEeccccCcCceEeecCCCC
Q psy15646 173 EVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRD-IVHKICANHFLHQDMELKPMPNTK 251 (388)
Q Consensus 173 ~vev~TGEEdEe~lF~~RaKLyrf~~k~WKERGvG~LKIlk~k~tgk~RLLMRrd-qv~KV~lN~~I~~~M~~~~~~~s~ 251 (388)
+||++.-- +|+.+|+.|||+|++.++++++||+|+|||.-+.+ +|..||+|.| ++++|+||..|+++|+++++.++.
T Consensus 371 kve~~ev~-edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknn 448 (487)
T KOG2724|consen 371 KVETVEVQ-EDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNN 448 (487)
T ss_pred eeEeeccc-CccchhccccceEEEecccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCCc
Confidence 44444333 46699999999999999999999999999976655 8999999986 589999999999999999998765
Q ss_pred cEEEEEeecCCccccccceeeeecCChhhHHhhcc
Q psy15646 252 QAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 252 ks~~w~a~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
..++.++ ..+...+.++|||||++|.|++|..
T Consensus 449 vlIvcvp---~~e~t~p~TmLIRvktad~aD~L~~ 480 (487)
T KOG2724|consen 449 VLIVCVP---PSESTEPATMLIRVKTADGADKLTD 480 (487)
T ss_pred eEEEEeC---CcccccceeEEEEecccchHHHHHH
Confidence 5555554 4466789999999999999999964
No 11
>KOG0864|consensus
Probab=99.67 E-value=1e-17 Score=158.14 Aligned_cols=115 Identities=43% Similarity=0.752 Sum_probs=101.3
Q ss_pred cceeeeecCChhhHHhhccccccccccceeeeeee-eeeeec--cccceeecceeEEEEEcCCCCcEEEEEEeCCC-CcE
Q psy15646 268 DEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRA-KLYRFV--DKEWKERGVGQLKLLKNKDTGKVRLLMRRDIV-HKI 343 (388)
Q Consensus 268 ~et~~IRFKt~e~A~eFksV~tGEEdEe~lf~~Ra-KL~r~d--~~~WkERGvG~LkIl~~k~t~k~RllMR~d~v-~kV 343 (388)
.+.-...++-.+...+ ..|+++|++|.++|..|+ +||+|+ .++|+|||.|.++|++|++++..|+|||+|++ ++|
T Consensus 31 ~~~~~~~~~~~~~~~~-~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v 109 (215)
T KOG0864|consen 31 EESPAKQVEPQEELEK-VEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKV 109 (215)
T ss_pred ccCccccccccccccc-hhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhh
Confidence 3444445555555566 789999999999999997 999997 67999999999999999999999999999999 899
Q ss_pred EEceecCCCCeeeecCCCCcEEEE-EeeecCcccccc-----ccCC
Q psy15646 344 CANHFLHQDMELKPMSNTKQAYIW-FAQDYADEVVSD-----RFDS 383 (388)
Q Consensus 344 ~LNh~I~~~m~~~~~~~~~k~~~w-~a~D~sdg~~~~-----~f~~ 383 (388)
|+||+|.+.|+++++...+++|+| ++.|++++.+.. ||+.
T Consensus 110 ~sn~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~ 155 (215)
T KOG0864|consen 110 CSNHFIGPSFKLEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAK 155 (215)
T ss_pred cccccccCcccccCCcccCcchhhhhhhhhcccccchhHHHHHhhh
Confidence 999999999999999999999999 799999988754 7773
No 12
>KOG0866|consensus
Probab=99.35 E-value=9.2e-14 Score=136.80 Aligned_cols=144 Identities=22% Similarity=0.290 Sum_probs=124.6
Q ss_pred CccccccCccccEEEEEEeeeEEeecc--cccceeeeEEEEEEEeCCCC----cEEEEEEeCCeeeeEeccccCcCceEe
Q psy15646 172 DEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTG----KVRLLMRRDIVHKICANHFLHQDMELK 245 (388)
Q Consensus 172 ~~vev~TGEEdEe~lF~~RaKLyrf~~--k~WKERGvG~LKIlk~k~tg----k~RLLMRrdqv~KV~lN~~I~~~M~~~ 245 (388)
..||+.+|||+|..+|++.||||-|++ ..|.|||.|.||++....++ ..|||||.-.+++|++|..|+..|..+
T Consensus 145 ~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~~e 224 (327)
T KOG0866|consen 145 SAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQIE 224 (327)
T ss_pred eeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHHHh
Confidence 568999999999999999999999987 58999999999998876554 379999999999999999999999998
Q ss_pred ecCCCCcEEEEEeecCCccccccceeeeecCChhhHHhhccccccccccceeeeeeeeeeeec--cccceeecceeEEEE
Q psy15646 246 PMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLL 323 (388)
Q Consensus 246 ~~~~s~ks~~w~a~D~aDee~k~et~~IRFKt~e~A~eFksV~tGEEdEe~lf~~RaKL~r~d--~~~WkERGvG~LkIl 323 (388)
.. +.+.++..++|..+. +.-+|..+++.+|++ .+.+-.||++.+++.
T Consensus 225 k~--sq~~ir~~a~~~e~~-----------------------------~v~vFl~~~~~~rtd~i~~s~~~~~i~~~~~~ 273 (327)
T KOG0866|consen 225 KA--SQKSIRITAMDTEGQ-----------------------------GVKVFLISASSKRTDQIYKSLSHRSIAALKSR 273 (327)
T ss_pred hh--cccceeeccccccCC-----------------------------cceEEEeeccccchhhhhhhhhhhhhhhhhcc
Confidence 76 455777776653111 356788888888888 678999999999999
Q ss_pred EcCCCCcEEEEEEeCCCCcEEEc
Q psy15646 324 KNKDTGKVRLLMRRDIVHKICAN 346 (388)
Q Consensus 324 ~~k~t~k~RllMR~d~v~kV~LN 346 (388)
..++.++.|++.+-++.+.++.+
T Consensus 274 ~~r~~~kak~~~~~e~s~~~l~~ 296 (327)
T KOG0866|consen 274 VERECLKAKMPAPEEGSAPLLKE 296 (327)
T ss_pred cchhhhhcccCCCcccccccccc
Confidence 99999999999999999999988
No 13
>KOG2724|consensus
Probab=99.08 E-value=4.9e-11 Score=121.02 Aligned_cols=95 Identities=23% Similarity=0.426 Sum_probs=78.8
Q ss_pred ccccccceeeeeeeeeeeeccccceeecceeEEEEEcCCCCcEEEEEEeCC-CCcEEEceecCCCCeeeecCCCCcEEEE
Q psy15646 289 TGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDI-VHKICANHFLHQDMELKPMSNTKQAYIW 367 (388)
Q Consensus 289 tGEEdEe~lf~~RaKL~r~d~~~WkERGvG~LkIl~~k~t~k~RllMR~d~-v~kV~LNh~I~~~m~~~~~~~~~k~~~w 367 (388)
..-.+++.+|..|||+|++.++++.+||+|+|+|....+ ++..||+|.|. +|+|+||.+|+++|+|+++++++..+++
T Consensus 375 ~ev~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvc 453 (487)
T KOG2724|consen 375 VEVQEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVC 453 (487)
T ss_pred ecccCccchhccccceEEEecccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEE
Confidence 334567899999999999999999999999999987766 99999999998 6999999999999999999999888888
Q ss_pred EeeecCcccccc--ccC-CC
Q psy15646 368 FAQDYADEVVSD--RFD-SG 384 (388)
Q Consensus 368 ~a~D~sdg~~~~--~f~-~~ 384 (388)
++.--+....++ |+| +|
T Consensus 454 vp~~e~t~p~TmLIRvktad 473 (487)
T KOG2724|consen 454 VPPSESTEPATMLIRVKTAD 473 (487)
T ss_pred eCCcccccceeEEEEecccc
Confidence 763322222233 888 44
No 14
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.04 E-value=3.1e-09 Score=89.76 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=81.9
Q ss_pred cEEEEEEeeeEEeecc--ccccee--eeEEEEEEEeCCCCcEEEEEEeCCeeeeEeccccCcCceEeecCCCCcEEEEEe
Q psy15646 183 ETVLFEQRAKLYRFVD--KEWKER--GVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFA 258 (388)
Q Consensus 183 Ee~lF~~RaKLyrf~~--k~WKER--GvG~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ks~~w~a 258 (388)
|.+|+..||.||++++ ++|..+ |+|.|.+.++...+.|||+||+.+..+|++|+.|.++|.+... .+....|-.
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~--~~~Fh~w~~ 78 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQA--TPFFHQWED 78 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeec--CCeEEEEEc
Confidence 4689999999999987 899999 9999999999877789999999999999999999999998774 355777753
Q ss_pred ecCCccccccceeeeecCChhhHHhhcc
Q psy15646 259 QDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 259 ~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
. ...+-+.|.++++|++|..
T Consensus 79 ~--------~~~~GL~F~se~eA~~F~~ 98 (104)
T cd00837 79 D--------NCVYGLNFASEEEAAQFRK 98 (104)
T ss_pred C--------CcEEEEeeCCHHHHHHHHH
Confidence 1 2479999999999999964
No 15
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.79 E-value=2.3e-08 Score=84.50 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=77.2
Q ss_pred cceeeeeeeeeeeecc--ccceee--cceeEEEEEcCCCCcEEEEEEeCCCCcEEEceecCCCCeeeecCCCCcEEEEE-
Q psy15646 294 ETVLFEQRAKLYRFVD--KEWKER--GVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWF- 368 (388)
Q Consensus 294 Ee~lf~~RaKL~r~d~--~~WkER--GvG~LkIl~~k~t~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k~~~w~- 368 (388)
+.+|+..||.||.+++ ++|..+ |+|.|.|.+|...+.+||+|++.+..++++|+.|+++|.|.. ...+...|-
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~--~~~~Fh~w~~ 78 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQ--ATPFFHQWED 78 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEee--cCCeEEEEEc
Confidence 4578999999999974 899999 999999999998888999999999999999999999999877 668899994
Q ss_pred -----eeecCccccccccCCC
Q psy15646 369 -----AQDYADEVVSDRFDSG 384 (388)
Q Consensus 369 -----a~D~sdg~~~~~f~~~ 384 (388)
+..|++.+...+|...
T Consensus 79 ~~~~~GL~F~se~eA~~F~~~ 99 (104)
T cd00837 79 DNCVYGLNFASEEEAAQFRKK 99 (104)
T ss_pred CCcEEEEeeCCHHHHHHHHHH
Confidence 6777777766677643
No 16
>KOG0866|consensus
Probab=98.46 E-value=3.1e-08 Score=98.15 Aligned_cols=87 Identities=26% Similarity=0.405 Sum_probs=78.0
Q ss_pred cccccccccceeeeeeeeeeeec--cccceeecceeEEEEEcCCCCc----EEEEEEeCCCCcEEEceecCCCCeeeecC
Q psy15646 286 SVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGK----VRLLMRRDIVHKICANHFLHQDMELKPMS 359 (388)
Q Consensus 286 sV~tGEEdEe~lf~~RaKL~r~d--~~~WkERGvG~LkIl~~k~t~k----~RllMR~d~v~kV~LNh~I~~~m~~~~~~ 359 (388)
++.+|||+|..+|...||||.|+ ...|.|||+|+||+..-..++- .||+||.-+.++|++|..|+..|..+.
T Consensus 148 E~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~~ek-- 225 (327)
T KOG0866|consen 148 EVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQIEK-- 225 (327)
T ss_pred eeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHHHhh--
Confidence 58999999999999999999998 4589999999999997776654 599999999999999999999999888
Q ss_pred CCCcEEEEEeeecCc
Q psy15646 360 NTKQAYIWFAQDYAD 374 (388)
Q Consensus 360 ~~~k~~~w~a~D~sd 374 (388)
.+.+.++-.++|-+.
T Consensus 226 ~sq~~ir~~a~~~e~ 240 (327)
T KOG0866|consen 226 ASQKSIRITAMDTEG 240 (327)
T ss_pred hcccceeeccccccC
Confidence 677789999999655
No 17
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=98.20 E-value=2.4e-05 Score=66.64 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=79.2
Q ss_pred cEEEEEEeeeEEeecc--c-ccce-eeeEEEEEEEeCCCCcEEEEEEeCCeeeeEeccccCcCceEeecCCCCcEEEEEe
Q psy15646 183 ETVLFEQRAKLYRFVD--K-EWKE-RGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFA 258 (388)
Q Consensus 183 Ee~lF~~RaKLyrf~~--k-~WKE-RGvG~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ks~~w~a 258 (388)
..+|+..+|.||..++ + +|.- .|.|.+.+.++.....|||.+++-+..++++|+.|.++|.++.. .+.-..|-.
T Consensus 8 ~~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~--~~~Fh~f~~ 85 (111)
T PF00568_consen 8 CQSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKA--RPFFHQFED 85 (111)
T ss_dssp EEEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEE--SSSEEEEEE
T ss_pred ceEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeC--CCcEEEEEe
Confidence 5799999999999965 4 4999 99999999998877779999999778999999999999999875 355677753
Q ss_pred ecCCccccccceeeeecCChhhHHhhcc
Q psy15646 259 QDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 259 ~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
++ ..|-+.|.+.++|++|..
T Consensus 86 -----~~---~~~GLnF~se~eA~~F~~ 105 (111)
T PF00568_consen 86 -----DD---CVYGLNFASEEEADQFYK 105 (111)
T ss_dssp -----TT---CEEEEEESSHHHHHHHHH
T ss_pred -----CC---eEEEEecCCHHHHHHHHH
Confidence 21 289999999999999964
No 18
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.06 E-value=3.1e-05 Score=66.87 Aligned_cols=94 Identities=21% Similarity=0.353 Sum_probs=78.8
Q ss_pred cEEEEEEeeeEEeecc--cccceeeeE-----EEEEEEeCCCCcEEEEEEeCCeeeeEeccccCcCceEeecCCCCcEEE
Q psy15646 183 ETVLFEQRAKLYRFVD--KEWKERGVG-----QLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYI 255 (388)
Q Consensus 183 Ee~lF~~RaKLyrf~~--k~WKERGvG-----~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ks~~ 255 (388)
|..||..||..|.+|+ +.|.--|-| .+.|.++...+-|||+=|+-+-.++++|..|.++|+++.. ....-.
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~--~p~Fh~ 78 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQA--TPTFHQ 78 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecCCceeeec--CCccee
Confidence 6689999999999987 789976664 7888888877789999999777999999999999999874 345666
Q ss_pred EEeecCCccccccceeeeecCChhhHHhhcc
Q psy15646 256 WFAQDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 256 w~a~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
|-. + ...|=+.|.++++|..|..
T Consensus 79 w~~-----~---~~v~GLnF~Se~eA~~F~~ 101 (111)
T cd01207 79 WRD-----A---RQVYGLNFGSKEDATMFAS 101 (111)
T ss_pred eec-----C---CeEEeeccCCHHHHHHHHH
Confidence 752 2 2689999999999999974
No 19
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.84 E-value=7.5e-05 Score=64.24 Aligned_cols=94 Identities=15% Similarity=0.285 Sum_probs=74.3
Q ss_pred cEEEEEEeeeEEeecc---cccceeeeEEE--EEEEeCCCCcEEEEEEeCCeeeeEeccccCcCceEeecCCCCcEEEEE
Q psy15646 183 ETVLFEQRAKLYRFVD---KEWKERGVGQL--KLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWF 257 (388)
Q Consensus 183 Ee~lF~~RaKLyrf~~---k~WKERGvG~L--KIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ks~~w~ 257 (388)
|..||..||..|.||+ +.|.--|-+.+ .+..+....-+|||=|++ .++++|..|.++|+++.. +.+.-.|-
T Consensus 3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~--~~~iINc~i~~~~~y~ka--s~~FhQWr 78 (111)
T cd01206 3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG--TKAIINSTITPNMTFTKT--SQKFGQWA 78 (111)
T ss_pred ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC--cEEEEeccccCCcceeec--cccccccc
Confidence 7889999999999987 48997776644 445666777899999876 599999999999999975 45566673
Q ss_pred eecCCccccccceeeeecCChhhHHhhcc
Q psy15646 258 AQDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 258 a~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
|. -.-..|=+-|.+.++|+.|.+
T Consensus 79 -----D~-R~~tVyGLnF~Sk~ea~~F~~ 101 (111)
T cd01206 79 -----DS-RANTVYGLGFSSEQQLTKFAE 101 (111)
T ss_pred -----cc-ccceeeecccCCHHHHHHHHH
Confidence 22 123778899999999998853
No 20
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=97.77 E-value=0.00018 Score=61.32 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=69.5
Q ss_pred ceeeeeeeeeeeec--cc-ccee-ecceeEEEEEcCCCCcEEEEEEeCCCCcEEEceecCCCCeeeecCCCCcEEEEE--
Q psy15646 295 TVLFEQRAKLYRFV--DK-EWKE-RGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWF-- 368 (388)
Q Consensus 295 e~lf~~RaKL~r~d--~~-~WkE-RGvG~LkIl~~k~t~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k~~~w~-- 368 (388)
.+|...+|.||..+ .+ +|.- .|.|.+.+.++.....+||.+++-+.+++++|+.|+++|.|.. ..+....|-
T Consensus 9 ~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~--~~~~Fh~f~~~ 86 (111)
T PF00568_consen 9 QSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTK--ARPFFHQFEDD 86 (111)
T ss_dssp EEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEE--ESSSEEEEEET
T ss_pred eEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEe--CCCcEEEEEeC
Confidence 68899999999996 34 4999 9999999999988788899999977899999999999999998 567899995
Q ss_pred ----eeecCcccccccc
Q psy15646 369 ----AQDYADEVVSDRF 381 (388)
Q Consensus 369 ----a~D~sdg~~~~~f 381 (388)
+..|++.+-...|
T Consensus 87 ~~~~GLnF~se~eA~~F 103 (111)
T PF00568_consen 87 DCVYGLNFASEEEADQF 103 (111)
T ss_dssp TCEEEEEESSHHHHHHH
T ss_pred CeEEEEecCCHHHHHHH
Confidence 5555554443333
No 21
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.70 E-value=0.00016 Score=62.51 Aligned_cols=87 Identities=16% Similarity=0.342 Sum_probs=72.8
Q ss_pred cceeeeeeeeeeeec--cccceeecce-----eEEEEEcCCCCcEEEEEEeCCCCcEEEceecCCCCeeeecCCCCcEEE
Q psy15646 294 ETVLFEQRAKLYRFV--DKEWKERGVG-----QLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYI 366 (388)
Q Consensus 294 Ee~lf~~RaKL~r~d--~~~WkERGvG-----~LkIl~~k~t~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k~~~ 366 (388)
|..++..||.+|.+| .+.|---|-| .+.|.++...+-+||+=|+-+-.++++|..|+++|+|.. ...++-.
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k--~~p~Fh~ 78 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQ--ATPTFHQ 78 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecCCceeee--cCCccee
Confidence 567899999999998 5689986664 788999888888999999877789999999999999888 6778888
Q ss_pred EE------eeecCccccccccC
Q psy15646 367 WF------AQDYADEVVSDRFD 382 (388)
Q Consensus 367 w~------a~D~sdg~~~~~f~ 382 (388)
|. +..|+.++-..+|.
T Consensus 79 w~~~~~v~GLnF~Se~eA~~F~ 100 (111)
T cd01207 79 WRDARQVYGLNFGSKEDATMFA 100 (111)
T ss_pred eecCCeEEeeccCCHHHHHHHH
Confidence 84 66777766666665
No 22
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.19 E-value=0.00089 Score=57.71 Aligned_cols=84 Identities=15% Similarity=0.317 Sum_probs=65.0
Q ss_pred cceeeeeeeeeeeecc---ccceeecce--eEEEEEcCCCCcEEEEEEeCCCCcEEEceecCCCCeeeecCCCCcEEEEE
Q psy15646 294 ETVLFEQRAKLYRFVD---KEWKERGVG--QLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWF 368 (388)
Q Consensus 294 Ee~lf~~RaKL~r~d~---~~WkERGvG--~LkIl~~k~t~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k~~~w~ 368 (388)
|..+|..||.+|.||+ +.|---|-+ .+.+..|.....+|||=|++ .++++|-.|.++|+|.. ...++=.|.
T Consensus 3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~--~~~iINc~i~~~~~y~k--as~~FhQWr 78 (111)
T cd01206 3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG--TKAIINSTITPNMTFTK--TSQKFGQWA 78 (111)
T ss_pred ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC--cEEEEeccccCCcceee--ccccccccc
Confidence 7789999999999983 489977766 45556777777889999876 49999999999999988 677777773
Q ss_pred --------eeecCcccccccc
Q psy15646 369 --------AQDYADEVVSDRF 381 (388)
Q Consensus 369 --------a~D~sdg~~~~~f 381 (388)
++.|+..+-.++|
T Consensus 79 D~R~~tVyGLnF~Sk~ea~~F 99 (111)
T cd01206 79 DSRANTVYGLGFSSEQQLTKF 99 (111)
T ss_pred ccccceeeecccCCHHHHHHH
Confidence 4556554444444
No 23
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=96.55 E-value=0.036 Score=47.12 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=70.7
Q ss_pred cEEEEEEeeeEEeecc--cccceeeeE-EEEEEEeCC--CCcEEEEEEeCCeeeeEeccccCcCceEeecCCCCcEEEEE
Q psy15646 183 ETVLFEQRAKLYRFVD--KEWKERGVG-QLKLLKNKD--TGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWF 257 (388)
Q Consensus 183 Ee~lF~~RaKLyrf~~--k~WKERGvG-~LKIlk~k~--tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ks~~w~ 257 (388)
|.++...+|-.+.|+. +.|.-.|.| -+.+.+... +.-+||+=++.+. +|++|+.|.++|++.... +..-.|-
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~~--~~Fh~f~ 79 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQAT--PTFHQWA 79 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeecC--CceEEEE
Confidence 5577788888887765 789999999 777776433 3357999888654 999999999999998743 4455564
Q ss_pred eecCCccccccceeeeecCChhhHHhhcc
Q psy15646 258 AQDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 258 a~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
. + ...|-+-|.++++|++|..
T Consensus 80 ~-----~---~~~~GLnF~se~EA~~F~~ 100 (106)
T smart00461 80 D-----D---KCVYGLNFASEEEAKKFRK 100 (106)
T ss_pred e-----C---CeEEEeecCCHHHHHHHHH
Confidence 2 1 3468899999999999964
No 24
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=96.32 E-value=0.018 Score=48.99 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=66.5
Q ss_pred cceeeeeeeeeeeec--cccceeecce-eEEEEEcCC--CCcEEEEEEeCCCCcEEEceecCCCCeeeecCCCCcEEEEE
Q psy15646 294 ETVLFEQRAKLYRFV--DKEWKERGVG-QLKLLKNKD--TGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWF 368 (388)
Q Consensus 294 Ee~lf~~RaKL~r~d--~~~WkERGvG-~LkIl~~k~--t~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k~~~w~ 368 (388)
+..+...+|-.+.|+ .+.|.-.|.| .+.+.++.. +.-+||+=++.+. ++++|+-|+++|+|.. .....-.|-
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~--~~~~Fh~f~ 79 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQ--ATPTFHQWA 79 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEee--cCCceEEEE
Confidence 446677788888776 5689999999 777776543 3345999777654 9999999999999988 567788884
Q ss_pred ------eeecCccccccccCCC
Q psy15646 369 ------AQDYADEVVSDRFDSG 384 (388)
Q Consensus 369 ------a~D~sdg~~~~~f~~~ 384 (388)
+..|++.+-..+|...
T Consensus 80 ~~~~~~GLnF~se~EA~~F~~~ 101 (106)
T smart00461 80 DDKCVYGLNFASEEEAKKFRKK 101 (106)
T ss_pred eCCeEEEeecCCHHHHHHHHHH
Confidence 6777777766677643
No 25
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.09 E-value=1 Score=50.73 Aligned_cols=101 Identities=24% Similarity=0.225 Sum_probs=72.7
Q ss_pred cCccccEEEEEEeeeEEeecc--cccceeee-EEEEEEEeCCCCcEEEEEEeCCeeeeEeccccCcCceEeecCCCCcEE
Q psy15646 178 TGEENETVLFEQRAKLYRFVD--KEWKERGV-GQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAY 254 (388)
Q Consensus 178 TGEEdEe~lF~~RaKLyrf~~--k~WKERGv-G~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ks~ 254 (388)
...+..+.++...|+||.|+. ..|.-..- =.++|.+ +|++-..++-++..+.++++.|.++|.+.-.. ...++
T Consensus 242 ~~p~~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~---~~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~-e~lSF 317 (794)
T PF08553_consen 242 APPEAGEILASESAELYLYDPPTGKFVLQDSSVTAKIIE---TGKWEYWLQIEGKDKIWLGQPVSSDMNPVFNF-EHLSF 317 (794)
T ss_pred cCCCccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEE---cCCeEEEEEEecCCceEEeeeccCCcCeEEEc-ceeEE
Confidence 334455599999999999986 67876653 2355544 35655555555666778999999999977643 34578
Q ss_pred EEEeecCCccccccceeeeecCChhhHHhhc
Q psy15646 255 IWFAQDYADEVVSDEQLCAKFKLPEDAERFR 285 (388)
Q Consensus 255 ~w~a~D~aDee~k~et~~IRFKt~e~A~eFk 285 (388)
+|.-. .+.+..-.|+|||++.+...+|.
T Consensus 318 iFN~~---~~~~~~~sw~lkF~~~~~~~~F~ 345 (794)
T PF08553_consen 318 IFNYY---TEDGSAYSWLLKFKDQEDYERFQ 345 (794)
T ss_pred EEEeE---cCCCceEEEEEEeCCHHHHHHHH
Confidence 88642 12247889999999999999995
No 26
>KOG4590|consensus
Probab=81.55 E-value=1.4 Score=46.03 Aligned_cols=81 Identities=16% Similarity=0.347 Sum_probs=60.3
Q ss_pred eecc--cccceeee-----EEEEEEEeCCCCcEEEEEEeCCe-eeeEeccccCcCceEeecCCCCcEEEEEeecCCcccc
Q psy15646 195 RFVD--KEWKERGV-----GQLKLLKNKDTGKVRLLMRRDIV-HKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVV 266 (388)
Q Consensus 195 rf~~--k~WKERGv-----G~LKIlk~k~tgk~RLLMRrdqv-~KV~lN~~I~~~M~~~~~~~s~ks~~w~a~D~aDee~ 266 (388)
.||+ +.|.--|. -.++|..|....-+|||-|+-|- +-|+||..|.++++|.... ...--|- |+
T Consensus 2 ~ydd~~k~W~p~g~g~~~~s~V~~~~h~~~n~frVvg~k~qdd~~vVlnC~I~kGlkYnkat--ptFHqWR-----~a-- 72 (409)
T KOG4590|consen 2 TYDDSQKGWLPAGGGGAALSKVRIYHHTSGNTFRVVGRKSQDDQQVVLNCLILKGLKYNKAT--PTFHQWR-----DA-- 72 (409)
T ss_pred cccccccccccccccCcccceeEEEeeccCCceeEEeeecccCcccccccccccCcceeecc--cchhhhh-----hh--
Confidence 4554 67776553 35666677777789999998776 8899999999999987643 2244452 12
Q ss_pred ccceeeeecCChhhHHhhc
Q psy15646 267 SDEQLCAKFKLPEDAERFR 285 (388)
Q Consensus 267 k~et~~IRFKt~e~A~eFk 285 (388)
...|-+.|.+.++|..|.
T Consensus 73 -rqvyGLnFqs~~DA~~Fa 90 (409)
T KOG4590|consen 73 -RQVYGLTFQSEQDARAFA 90 (409)
T ss_pred -hhhhcccccChhhhhhhh
Confidence 567999999999999995
No 27
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=75.19 E-value=54 Score=28.30 Aligned_cols=89 Identities=20% Similarity=0.327 Sum_probs=66.1
Q ss_pred EEEEEeeeEEeecc--cccceeeeEEEEEEEeCCCCc--EEEEEEeCCeeeeEeccccCcCceEeecCCCCcEEEEE-ee
Q psy15646 185 VLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGK--VRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWF-AQ 259 (388)
Q Consensus 185 ~lF~~RaKLyrf~~--k~WKERGvG~LKIlk~k~tgk--~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ks~~w~-a~ 259 (388)
+|-..=+.||.-.+ .+|.-...|-|-+.++...+. .||+=... .+++..+-|+.+|.+... +.+..+ +.
T Consensus 6 il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~--~~v~weqElY~~f~y~~~----r~fFhtFe~ 79 (105)
T cd01205 6 ILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKA--NRIIWEQELYDNFEYQQP----RPFFHTFEG 79 (105)
T ss_pred EEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccC--CcEEEEEEcccCcEEccC----CCcEEEEec
Confidence 55666788999854 899999999999988754333 37766553 899999999999998763 333322 21
Q ss_pred cCCccccccceeeeecCChhhHHhhcc
Q psy15646 260 DYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 260 D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
| -.++-+.|-+.++|++|..
T Consensus 80 d-------~c~~GL~Fade~EA~~F~k 99 (105)
T cd01205 80 D-------DCVVGLNFADETEAAEFRK 99 (105)
T ss_pred c-------CcEEEEEECCHHHHHHHHH
Confidence 1 4567889999999999964
No 28
>KOG3671|consensus
Probab=70.49 E-value=4.9 Score=43.13 Aligned_cols=98 Identities=28% Similarity=0.486 Sum_probs=64.0
Q ss_pred cccCccccEEEEEE---e--------eeEEeecc--cccceeee-EEEEEEEeCCCC--cEEEEEEeCCeeeeEeccccC
Q psy15646 176 VTTGEENETVLFEQ---R--------AKLYRFVD--KEWKERGV-GQLKLLKNKDTG--KVRLLMRRDIVHKICANHFLH 239 (388)
Q Consensus 176 v~TGEEdEe~lF~~---R--------aKLyrf~~--k~WKERGv-G~LKIlk~k~tg--k~RLLMRrdqv~KV~lN~~I~ 239 (388)
..|.||+| .||.. + ++||.-+. ..|+-+|. |-|-|-+...-. -.||+--.+ ++||..+-|+
T Consensus 20 lLt~~ene-~lf~~lgk~~~~l~aAVVqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY 96 (569)
T KOG3671|consen 20 LLTSEENE-TLFKLLGKKCKTLAAAVVQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELY 96 (569)
T ss_pred ccchhHHH-HHHHHhccchhhHHHHHHHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhh
Confidence 34567766 45543 2 23444433 48999999 999987754222 246666554 5699999999
Q ss_pred cCceEeecCCCCcEEEEEeecCCccccccceeeeecCChhhHHhhcc
Q psy15646 240 QDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRS 286 (388)
Q Consensus 240 ~~M~~~~~~~s~ks~~w~a~D~aDee~k~et~~IRFKt~e~A~eFks 286 (388)
.+|.+.. ++.++.+ |. ++ ..+.-+.|-+.++|++|..
T Consensus 97 ~nf~y~q----~r~ffht---Fe-gd--dc~aGLnF~~E~EA~~F~k 133 (569)
T KOG3671|consen 97 QNFEYRQ----PRTFFHT---FE-GD--DCQAGLNFASEEEAQKFRK 133 (569)
T ss_pred hhceecc----Cccceee---ec-cc--cceeeecccCHHHHHHHHH
Confidence 9999874 4433332 32 11 2367788999999999974
No 29
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=67.23 E-value=20 Score=31.35 Aligned_cols=64 Identities=16% Similarity=0.413 Sum_probs=42.5
Q ss_pred eeeeeeeec--cccceeecc-eeEEEEEcCCCCcE-EEEEEeCCCCcEEEceecCCCCeeeecCCCCcEEEEE
Q psy15646 300 QRAKLYRFV--DKEWKERGV-GQLKLLKNKDTGKV-RLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWF 368 (388)
Q Consensus 300 ~RaKL~r~d--~~~WkERGv-G~LkIl~~k~t~k~-RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k~~~w~ 368 (388)
.-|-||.|+ .++|...|+ |.|-|.+-....++ -+||-|.....++.. |++++.++.. +..+.+-
T Consensus 27 ~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~---~~~l~~r 94 (122)
T PF06058_consen 27 SHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEP--ITPDLDFELQ---DPYLIYR 94 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEE--E-SGGGEEEE---TTEEEEE
T ss_pred CeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeee--cCCCcEEEEe---CCEEEEE
Confidence 458899997 779998876 88988865555666 566777766666654 7888888873 2355553
No 30
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=61.90 E-value=68 Score=27.65 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=61.1
Q ss_pred ceeeeeeeeeeeec--cccceeecceeEEEEEcCCCCcE--EEEEEeCCCCcEEEceecCCCCeeeecCCCCcEEEEE--
Q psy15646 295 TVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKV--RLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWF-- 368 (388)
Q Consensus 295 e~lf~~RaKL~r~d--~~~WkERGvG~LkIl~~k~t~k~--RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k~~~w~-- 368 (388)
.++-..-+.||.-. .++|.-...|.|-+.++.....+ ||+=... ++++.-|-|+.+|.|.. .-....+|-
T Consensus 5 ~il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~--~~v~weqElY~~f~y~~--~r~fFhtFe~d 80 (105)
T cd01205 5 KILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKA--NRIIWEQELYDNFEYQQ--PRPFFHTFEGD 80 (105)
T ss_pred eEEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccC--CcEEEEEEcccCcEEcc--CCCcEEEEecc
Confidence 35556778899874 48999999999999988644444 7775554 89999999999999888 334566663
Q ss_pred ----eeecCccccccccC
Q psy15646 369 ----AQDYADEVVSDRFD 382 (388)
Q Consensus 369 ----a~D~sdg~~~~~f~ 382 (388)
+..|+|++....|.
T Consensus 81 ~c~~GL~Fade~EA~~F~ 98 (105)
T cd01205 81 DCVVGLNFADETEAAEFR 98 (105)
T ss_pred CcEEEEEECCHHHHHHHH
Confidence 56666655555553
No 31
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=47.01 E-value=1e+02 Score=33.95 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=67.1
Q ss_pred EEEEEEeeeEEeecccc--cceeeeEEEEEEEeCCCCcEEEEEEeCCeeeeEeccccCcCceEeecCCCCcEEEEEeecC
Q psy15646 184 TVLFEQRAKLYRFVDKE--WKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDY 261 (388)
Q Consensus 184 e~lF~~RaKLyrf~~k~--WKERGvG~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ks~~w~a~D~ 261 (388)
+.++..-+-|++|+.-+ +-.. --.+++-. -++|++-..+|-+.--+++|-..|.++|.+.-.. ...+++|.-++
T Consensus 229 e~~~~~~~~l~~yd~~~e~Filq-~p~Vkv~i-~d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~-~~~tFvwny~~- 304 (776)
T COG5167 229 ETLYSKNGVLSRYDTATERFILQ-KPHVKVVI-VDDGKEVFWIRIETRDDVILFEEVRTETNPYFDQ-KNTTFVWNYME- 304 (776)
T ss_pred ceeeeecceEEeecchhheeeec-CCceEEEE-EecCCeEEEEEEecccceeehheeccccCcceec-ccceeeeeeec-
Confidence 48899999999998621 1100 01111111 1578988888888777889999999998876533 34589997542
Q ss_pred CccccccceeeeecCChhhHHhhc
Q psy15646 262 ADEVVSDEQLCAKFKLPEDAERFR 285 (388)
Q Consensus 262 aDee~k~et~~IRFKt~e~A~eFk 285 (388)
. ...-.|++||++-..+.+|.
T Consensus 305 --~-n~~~s~~LrF~d~~~~~qF~ 325 (776)
T COG5167 305 --D-NVFHSFSLRFLDNLDFLQFL 325 (776)
T ss_pred --c-cchheeeeeecchhHHHHHH
Confidence 2 36788999999999999995
No 32
>KOG3671|consensus
Probab=44.37 E-value=15 Score=39.66 Aligned_cols=83 Identities=20% Similarity=0.357 Sum_probs=55.5
Q ss_pred eeeeeeeeeeeec--cccceeecc-eeEEEEEcCCCCcE--EEEEEeCCCCcEEEceecCCCCeeeecCCCCcEEEE---
Q psy15646 296 VLFEQRAKLYRFV--DKEWKERGV-GQLKLLKNKDTGKV--RLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIW--- 367 (388)
Q Consensus 296 ~lf~~RaKL~r~d--~~~WkERGv-G~LkIl~~k~t~k~--RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k~~~w--- 367 (388)
+|-..-++||.-+ .+.|.-+|. |.|-|-++.--..| ||+=-.+ ++|+--+-|+.+|.|.. --..+..|
T Consensus 39 ~l~aAVVqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY~nf~y~q--~r~ffhtFegd 114 (569)
T KOG3671|consen 39 TLAAAVVQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELYQNFEYRQ--PRTFFHTFEGD 114 (569)
T ss_pred hHHHHHHHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhhhhceecc--Cccceeeeccc
Confidence 3444556677655 459999999 98888765533333 6665443 56999999999999877 22455555
Q ss_pred ---EeeecCccccccccC
Q psy15646 368 ---FAQDYADEVVSDRFD 382 (388)
Q Consensus 368 ---~a~D~sdg~~~~~f~ 382 (388)
++..|.+++..+.|.
T Consensus 115 dc~aGLnF~~E~EA~~F~ 132 (569)
T KOG3671|consen 115 DCQAGLNFASEEEAQKFR 132 (569)
T ss_pred cceeeecccCHHHHHHHH
Confidence 266677766666554
No 33
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=40.08 E-value=2.6e+02 Score=24.49 Aligned_cols=89 Identities=18% Similarity=0.372 Sum_probs=54.6
Q ss_pred EEEEEE-eeeEEeecc--cccceeee-EEEEEEEeCCCCcEE-EEEEeCCeeeeEeccccCcCceEeecCCCCcEEEEEe
Q psy15646 184 TVLFEQ-RAKLYRFVD--KEWKERGV-GQLKLLKNKDTGKVR-LLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFA 258 (388)
Q Consensus 184 e~lF~~-RaKLyrf~~--k~WKERGv-G~LKIlk~k~tgk~R-LLMRrdqv~KV~lN~~I~~~M~~~~~~~s~ks~~w~a 258 (388)
++|... -|-||.|+. ++|...|+ |.|-|-+.....+++ +||-|.....++.. |.+++.++... .-+++-
T Consensus 21 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~~---~~l~~r- 94 (122)
T PF06058_consen 21 SILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEP--ITPDLDFELQD---PYLIYR- 94 (122)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEE--E-SGGGEEEET---TEEEEE-
T ss_pred HHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeee--cCCCcEEEEeC---CEEEEE-
Confidence 344433 789999974 89998886 889887655555665 45555555555443 77888887642 234443
Q ss_pred ecCCccccccceeeeecCChhhHHhh
Q psy15646 259 QDYADEVVSDEQLCAKFKLPEDAERF 284 (388)
Q Consensus 259 ~D~aDee~k~et~~IRFKt~e~A~eF 284 (388)
. + ..+-|-|=|=+.+++++.
T Consensus 95 ~----~--~~~I~GiWf~~~~d~~ri 114 (122)
T PF06058_consen 95 N----D--NQEIYGIWFYDDEDRQRI 114 (122)
T ss_dssp E----T--TTEEEEEEESSHHHHHHH
T ss_pred c----C--CceEEEEEEEeHHHHHHH
Confidence 1 1 125677778888777664
No 34
>PRK15491 replication factor A; Provisional
Probab=36.26 E-value=4.2e+02 Score=27.48 Aligned_cols=45 Identities=24% Similarity=0.460 Sum_probs=32.3
Q ss_pred EEEEEeeeEEee-cccccc-eee-eEEEE--EEEeCCCCcEEEEEEeCCee
Q psy15646 185 VLFEQRAKLYRF-VDKEWK-ERG-VGQLK--LLKNKDTGKVRLLMRRDIVH 230 (388)
Q Consensus 185 ~lF~~RaKLyrf-~~k~WK-ERG-vG~LK--Ilk~k~tgk~RLLMRrdqv~ 230 (388)
.-+..+||+... +.+.|. .+| .|.+. ++- .++|.+|+++-.+...
T Consensus 68 ~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~-DeTG~ir~tlW~~~a~ 117 (374)
T PRK15491 68 SNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVA-DETGSIRLTLWDDLAD 117 (374)
T ss_pred CceEEEEEEeeccCCeeeecCCCCceEEEEEEEE-cCCCeEEEEEECchhh
Confidence 445668888877 458884 457 67776 444 3799999999998743
No 35
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=31.61 E-value=2.1e+02 Score=26.53 Aligned_cols=100 Identities=19% Similarity=0.319 Sum_probs=50.7
Q ss_pred cEEEEEE-eeeEEeecc---------cccc---eeeeEEEEEEEeCCCCcEEEEEEeCCeeeeEeccccCcCceEeecCC
Q psy15646 183 ETVLFEQ-RAKLYRFVD---------KEWK---ERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPN 249 (388)
Q Consensus 183 Ee~lF~~-RaKLyrf~~---------k~WK---ERGvG~LKIlk~k~tgk~RLLMRrdqv~KV~lN~~I~~~M~~~~~~~ 249 (388)
|.+||.. .|-+|+.-+ .+|. .-=.|-|||....+.-+++|++-...++.+.+...+...-.+++.-.
T Consensus 3 e~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~~~VE~v~D 82 (160)
T PF07933_consen 3 ERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDYAAVEPVID 82 (160)
T ss_dssp S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS--EEE-TT
T ss_pred eEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCCCceEEeec
Confidence 4455554 445565532 3565 34578999987655445688888888999999999998877888777
Q ss_pred CCcEEEEEeecCCccccccceeeeecCChhhHHhhc
Q psy15646 250 TKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFR 285 (388)
Q Consensus 250 s~ks~~w~a~D~aDee~k~et~~IRFKt~e~A~eFk 285 (388)
+.|-++.--.| +.++...+=|=|..=.+|=.|.
T Consensus 83 SSRYFvlRv~d---~~Gr~AfiGiGF~eRsdAFDF~ 115 (160)
T PF07933_consen 83 SSRYFVLRVQD---PSGRHAFIGIGFRERSDAFDFN 115 (160)
T ss_dssp --S-EEEEEEE---TTTEEEEEEEE-S-HHHHHHHH
T ss_pred ccceEEEEEEc---CCCcEEEEEEeeccccccccHH
Confidence 76666554433 3455666677788777777774
No 36
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=29.99 E-value=2.6e+02 Score=32.17 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=51.9
Q ss_pred ccccceeeeeeeeeeeec--cccceeecce-eEEEEEcCCCCcEEEEEEeCCCCcEEEceecCCCCeeeecCCCCcEEEE
Q psy15646 291 EENETVLFEQRAKLYRFV--DKEWKERGVG-QLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIW 367 (388)
Q Consensus 291 EEdEe~lf~~RaKL~r~d--~~~WkERGvG-~LkIl~~k~t~k~RllMR~d~v~kV~LNh~I~~~m~~~~~~~~~k~~~w 367 (388)
.+..+.++...|+||.|| ...|.-..-. .++|.+ +++.-..|+-++..+..|++.|.++|..... ....+++|
T Consensus 244 p~~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~---~~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~-~e~lSFiF 319 (794)
T PF08553_consen 244 PEAGEILASESAELYLYDPPTGKFVLQDSSVTAKIIE---TGKWEYWLQIEGKDKIWLGQPVSSDMNPVFN-FEHLSFIF 319 (794)
T ss_pred CCccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEE---cCCeEEEEEEecCCceEEeeeccCCcCeEEE-cceeEEEE
Confidence 344458999999999998 6688866533 255553 4666566666677788899999999997762 23346666
Q ss_pred E
Q psy15646 368 F 368 (388)
Q Consensus 368 ~ 368 (388)
.
T Consensus 320 N 320 (794)
T PF08553_consen 320 N 320 (794)
T ss_pred E
Confidence 3
No 37
>KOG4590|consensus
Probab=26.59 E-value=74 Score=33.62 Aligned_cols=57 Identities=16% Similarity=0.399 Sum_probs=43.7
Q ss_pred cccceeecce-----eEEEEEcCCCCcEEEEEEeCCC-CcEEEceecCCCCeeeecCCCCcEEEE
Q psy15646 309 DKEWKERGVG-----QLKLLKNKDTGKVRLLMRRDIV-HKICANHFLHQDMELKPMSNTKQAYIW 367 (388)
Q Consensus 309 ~~~WkERGvG-----~LkIl~~k~t~k~RllMR~d~v-~kV~LNh~I~~~m~~~~~~~~~k~~~w 367 (388)
.+.|---|.| .++|..|....-.||+-|.=+- .-|+||-.|.++++|.. ....+--|
T Consensus 7 ~k~W~p~g~g~~~~s~V~~~~h~~~n~frVvg~k~qdd~~vVlnC~I~kGlkYnk--atptFHqW 69 (409)
T KOG4590|consen 7 QKGWLPAGGGGAALSKVRIYHHTSGNTFRVVGRKSQDDQQVVLNCLILKGLKYNK--ATPTFHQW 69 (409)
T ss_pred ccccccccccCcccceeEEEeeccCCceeEEeeecccCcccccccccccCcceee--cccchhhh
Confidence 5678766633 4667778888888999997776 78999999999999776 55556666
No 38
>PF09200 Monellin: Monellin; InterPro: IPR015283 Monellin, a protein produced by the West African plant Dioscoreophyllum cumminsii (Serendipity berry), is approximately 70,000 times sweeter than sucrose on a molar basis. The protein adopts an alpha-beta structure, with a cystatin-like fold, where each helix packs against a coiled antiparallel beta-sheet []. ; PDB: 3PXM_A 1IV7_A 3PYJ_A 1KRL_D 4MON_B 2O9U_X 3Q2P_C 3MON_F 1MOL_B 1IV9_A ....
Probab=25.40 E-value=33 Score=24.89 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.7
Q ss_pred eeeeeeeec-cccceeecceeEEEEE
Q psy15646 300 QRAKLYRFV-DKEWKERGVGQLKLLK 324 (388)
Q Consensus 300 ~RaKL~r~d-~~~WkERGvG~LkIl~ 324 (388)
..-||++++ +.++|-||-|-|+.++
T Consensus 14 ~s~~L~r~~i~Ed~K~~~~~~L~FN~ 39 (43)
T PF09200_consen 14 ASDKLFRADISEDYKTRGRKLLRFNG 39 (43)
T ss_dssp ECCCCCCCCCCCCCCCTCCCCECEEE
T ss_pred hhhhhhheeccccccccceeEEEccC
Confidence 346889998 7899999999998874
No 39
>KOG3091|consensus
Probab=24.30 E-value=3.5e+02 Score=29.49 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC-----CCCCccccccccCC-CCCCCCCCccccccCCCCCCCCCCCccccccccccccccc
Q psy15646 10 GPPPQLSSTTPTSSNATKIP-----PTSTSTADVKSFGS-PAQLTSSPLGVSTTGTANSTPIKPSANTSLGGQLNTSQIG 83 (388)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (388)
+.++++|......+-+.-.. -+.++.-+-++||+ |+..++++...-++... ..+||+.+-+.. ++| +.
T Consensus 3 G~~~~~s~~~~~st~~~~~~~~~gt~t~tsa~~g~~fgs~p~~~taTt~~fG~~~~g----~~~fG~~~~~~~-~gs-~~ 76 (508)
T KOG3091|consen 3 GASGSTSGFAAGSTGASGGQGNFGTSTTTSASGGGAFGSQPTTGTATTGLFGANQAG----GTGFGTASTGTA-AGS-GF 76 (508)
T ss_pred CCCCCcCCCCCccCCcccccCCCCCccccccccccccccCCCCCCccccccccccCC----CCCccCCCCCcc-ccc-cc
Q ss_pred CCcCCCccccCCccCCCC----------cccCCCCCCCCCCCcccccCCCCcchhhc
Q psy15646 84 GNLNTSGQIGGPLNTSGQ----------LNSSQTGSGQTTPHKFQIQMPHESLSVIK 130 (388)
Q Consensus 84 ~~~n~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~t~~~ 130 (388)
...-+++..++.+.+... +...|...++-.-.++.+..++.....+|
T Consensus 77 ~~s~~t~~g~g~fgs~~g~~~~~~g~t~~~~~~~~qq~~~~~~~~~~~~si~~~~~f 133 (508)
T KOG3091|consen 77 GTSTATGAGGGFFGSQSGQQLGGLGGTSFQQQPPTQQQQLIQQSSPFAKAIGDPKLF 133 (508)
T ss_pred ccCCccCCccCccccccceeeccccccccccCCcccccccccccccccccccCcccc
No 40
>KOG2057|consensus
Probab=22.61 E-value=2.1e+02 Score=29.88 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=8.5
Q ss_pred cccccCCCCCCCCC
Q psy15646 37 DVKSFGSPAQLTSS 50 (388)
Q Consensus 37 ~~~~~~~~~~~~~~ 50 (388)
+--|||.++++-+.
T Consensus 343 aadlfG~faDf~~a 356 (499)
T KOG2057|consen 343 AADLFGAFADFFGA 356 (499)
T ss_pred chhhcCchhhhhhh
Confidence 55677776665433
Done!