RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15646
(388 letters)
>gnl|CDD|241325 cd13171, RanBD1_RanBP2_insect-like, Ran-binding protein 2, Ran
binding domain repeat 1. RanBP2 (also called E3
SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and
nuclear pore complex (NPC) protein Nup358) is a giant
nucleoporin that localizes to the cytosolic face of the
NPC. RanBP2 contains a leucine-rich region, 8
zinc-finger motifs, a cyclophilin A homologous domain,
and 4 RanBDs. Ran is a Ras-like nuclear small GTPase,
which regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. All eukaryotic cells contain RanBP1, but in
vertebrates however, the main RanBP seems to be RanBP2.
There is no RanBP2 ortholog in yeast. Transport complex
disassembly is accomplished by a small ubiquitin-related
modifier-1 (SUMO-1)-modified version of RanGAP that is
bound to RanBP2. RanBP1 acts as a second line of defense
against exported RanGTP-importin complexes which have
escaped from dissociation by RanBP2. RanBP2 also
interacts with the importin subunit beta-1. RabBD shares
structural similarity to the PH domain, but lacks
detectable sequence similarity. The members here include
insects and nematodes. The first RanBD is present in
this hierarchy.
Length = 112
Score = 181 bits (461), Expect = 6e-57
Identities = 71/112 (63%), Positives = 85/112 (75%)
Query: 183 ETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM 242
E VLF RAKL+R+VDKEWKERG+G LK+LKN TGKVRLLMRR+ VHK+CANHF+ +DM
Sbjct: 1 EEVLFCARAKLFRYVDKEWKERGIGNLKILKNPATGKVRLLMRREQVHKVCANHFITKDM 60
Query: 243 ELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSVTTGEENE 294
EL PM +AYIW A D+ADEVV E+LC +FK E A+ FR V T + E
Sbjct: 61 ELTPMDKEDKAYIWAANDFADEVVVLEKLCVRFKTVELAKEFRDVFTKAKKE 112
Score = 156 bits (396), Expect = 3e-47
Identities = 59/84 (70%), Positives = 69/84 (82%)
Query: 294 ETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM 353
E VLF RAKL+R+VDKEWKERG+G LK+LKN TGKVRLLMRR+ VHK+CANHF+ +DM
Sbjct: 1 EEVLFCARAKLFRYVDKEWKERGIGNLKILKNPATGKVRLLMRREQVHKVCANHFITKDM 60
Query: 354 ELKPMSNTKQAYIWFAQDYADEVV 377
EL PM +AYIW A D+ADEVV
Sbjct: 61 ELTPMDKEDKAYIWAANDFADEVV 84
>gnl|CDD|241330 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-binding protein 2,
Ran binding domain repeats 1 and 3. RanBP2 (also called
E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and
nuclear pore complex (NPC) protein Nup358) is a giant
nucleoporin that localizes to the cytosolic face of the
NPC. RanBP2 contains a leucine-rich region, 8
zinc-finger motifs, a cyclophilin A homologous domain,
and 4 RanBDs. Ran is a Ras-like nuclear small GTPase,
which regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. All eukaryotic cells contain RanBP1, but in
vertebrates however, the main RanBP seems to be RanBP2.
There is no RanBP2 ortholog in yeast. Transport complex
disassembly is accomplished by a small ubiquitin-related
modifier-1 (SUMO-1)-modified version of RanGAP that is
bound to RanBP2. RanBP1 acts as a second line of defense
against exported RanGTP-importin complexes which have
escaped from dissociation by RanBP2. RanBP2 also
interacts with the importin subunit beta-1. RabBD shares
structural similarity to the PH domain, but lacks
detectable sequence similarity. The members here include
human, chicken, frog, tunicates, sea urchins, ticks, sea
anemones, and sponges. RanBD repeats 1 and 3 are present
in this hierarchy.
Length = 116
Score = 165 bits (421), Expect = 7e-51
Identities = 60/112 (53%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
Query: 178 TGEENETVLFEQRAKLYRF-VD-KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICAN 235
TGEE+E LF RAKLYRF D K+WKERG+G +K+L+N ++GKVR+LMRRD V K+CAN
Sbjct: 1 TGEEDEEELFSHRAKLYRFDKDSKQWKERGIGDIKILQNPESGKVRILMRRDQVLKLCAN 60
Query: 236 HFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSV 287
H++ DM+LKP + ++++W A D+ADE EQL +FK PE A+ F+
Sbjct: 61 HYITPDMKLKPNAGSDRSWVWTALDFADEEPKPEQLAVRFKTPETADLFKDK 112
Score = 144 bits (364), Expect = 2e-42
Identities = 51/89 (57%), Positives = 71/89 (79%), Gaps = 2/89 (2%)
Query: 289 TGEENETVLFEQRAKLYRF-VD-KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICAN 346
TGEE+E LF RAKLYRF D K+WKERG+G +K+L+N ++GKVR+LMRRD V K+CAN
Sbjct: 1 TGEEDEEELFSHRAKLYRFDKDSKQWKERGIGDIKILQNPESGKVRILMRRDQVLKLCAN 60
Query: 347 HFLHQDMELKPMSNTKQAYIWFAQDYADE 375
H++ DM+LKP + + ++++W A D+ADE
Sbjct: 61 HYITPDMKLKPNAGSDRSWVWTALDFADE 89
>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain. The RanBD is present in
RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these
proteins have a single RanBD, with the exception of
RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear
small GTPase, which regulates receptor-mediated
transport between the nucleus and the cytoplasm. RanGTP
hydrolysis is stimulated by RanGAP together with the
Ran-binding domain containing acessory proteins RanBP1
and RanBP2. These accessory proteins stabilize the
active GTP-bound form of Ran. The Ran-binding domain is
found in multiple copies in Nuclear pore complex
proteins. RabBD shares structural similarity to the PH
domain, but lacks detectable sequence similarity. The
RanBD proteins of the nuclear pore complex (NPC):
nucleoporin 1 (NUP1), NUP2, NUP61, and Nuclear Pore
complex Protein 9 (npp-9) are present in the parent, but
specific models were not made due to lineage. To date
there been no reports of inositol phosphate or
phosphoinositide binding by Ran-binding proteins.
Length = 111
Score = 160 bits (406), Expect = 1e-48
Identities = 53/107 (49%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 183 ETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ 240
E VLF +RAKLYRF KEWKERGVG LK+LK+K+TGK R+LMRR+ V K+C NH +
Sbjct: 1 EEVLFSERAKLYRFDKDTKEWKERGVGDLKILKHKETGKYRILMRREQVGKVCLNHLITP 60
Query: 241 DMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSV 287
+M+LKP + +A +W A D +D E +FK E+A+ F+
Sbjct: 61 EMKLKPTAGSDKAVVWTAVDDSDGEGKPETFALRFKTAEEAKEFKKA 107
Score = 138 bits (349), Expect = 3e-40
Identities = 47/84 (55%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 294 ETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ 351
E VLF +RAKLYRF KEWKERGVG LK+LK+K+TGK R+LMRR+ V K+C NH +
Sbjct: 1 EEVLFSERAKLYRFDKDTKEWKERGVGDLKILKHKETGKYRILMRREQVGKVCLNHLITP 60
Query: 352 DMELKPMSNTKQAYIWFAQDYADE 375
+M+LKP + + +A +W A D +D
Sbjct: 61 EMKLKPTAGSDKAVVWTAVDDSDG 84
>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain. Domain of apporximately 150
residues that stabilises the GTP-bound form of Ran (the
Ras-like nuclear small GTPase).
Length = 130
Score = 155 bits (394), Expect = 1e-46
Identities = 66/125 (52%), Positives = 89/125 (71%), Gaps = 4/125 (3%)
Query: 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKD-TGKV 220
FKP++PLPD V V TGEE+E V+F RAKLYRF + KEWKERGVG LK+LK+KD GKV
Sbjct: 1 FKPVVPLPD-VEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKV 59
Query: 221 RLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPED 280
R++MRRD V K+CANH + + M LKP+ + +A W +D+AD++ +FK E+
Sbjct: 60 RIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEE 119
Query: 281 AERFR 285
A+ F+
Sbjct: 120 ADSFK 124
Score = 128 bits (324), Expect = 3e-36
Identities = 53/92 (57%), Positives = 70/92 (76%), Gaps = 3/92 (3%)
Query: 287 VTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKD-TGKVRLLMRRDIVHKI 343
V TGEE+E V+F RAKLYRF + KEWKERGVG LK+LK+KD GKVR++MRRD V K+
Sbjct: 12 VKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKV 71
Query: 344 CANHFLHQDMELKPMSNTKQAYIWFAQDYADE 375
CANH + + M LKP++ + +A W +D+AD+
Sbjct: 72 CANHPIFKSMTLKPLAGSNRALKWTPEDFADD 103
>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain. RanBP1 interacts
specifically with GTP-charged Ran. RanBP1 does not
activate GTPase activity of Ran, but does markedly
increase GTP hydrolysis by the RanGTPase-activating
protein (RanGAP1). In both mammalian cells and in yeast,
RanBP1 acts as a negative regulator of Regulator of
chromosome condensation 1 (RCC1) by inhibiting
RCC1-stimulated guanine nucleotide release from Ran. In
addition to Ran, RanBP1 has been shown to interact with
Exportin-1 and Importin subunit beta-1 which docks the
NPC at the cytoplasmic side of the nuclear pore complex.
RabBP1 contains a single RanBD. The RanBD is present in
RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these
proteins have a single RanBD, with the exception of
RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear
small GTPase, which regulates receptor-mediated
transport between the nucleus and the cytoplasm. RanGTP
hydrolysis is stimulated by RanGAP together with the
Ran-binding domain containing acessory proteins RanBP1
and RanBP2. These accessory proteins stabilize the
active GTP-bound form of Ran. The Ran-binding domain is
found in multiple copies in Nuclear pore complex
proteins. RabBD shares structural similarity to the PH
domain, but lacks detectable sequence similarity.
Length = 126
Score = 152 bits (386), Expect = 2e-45
Identities = 58/120 (48%), Positives = 80/120 (66%), Gaps = 5/120 (4%)
Query: 173 EVPVTTGEENETVLFEQRAKLYRFVD----KEWKERGVGQLKLLKNKDTGKVRLLMRRDI 228
EV V T EE+E LF+ RAKLYRF EWKERG G +K+LK+K+T K+RLLMRRD
Sbjct: 1 EVEVKTNEEDEEELFKMRAKLYRFDTENDPPEWKERGTGDVKILKHKETNKIRLLMRRDK 60
Query: 229 VHKICANHFLHQDMELKPMPNTKQAYIWFA-QDYADEVVSDEQLCAKFKLPEDAERFRSV 287
KICANH++ +M+LKP + +A++W D+ADE E L +F E+A++F++
Sbjct: 61 TLKICANHYITPEMKLKPNCGSDRAWVWNTPADFADEEPKPELLAIRFANAENAQKFKTK 120
Score = 134 bits (340), Expect = 1e-38
Identities = 50/95 (52%), Positives = 66/95 (69%), Gaps = 5/95 (5%)
Query: 287 VTTGEENETVLFEQRAKLYRFVD----KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHK 342
V T EE+E LF+ RAKLYRF EWKERG G +K+LK+K+T K+RLLMRRD K
Sbjct: 4 VKTNEEDEEELFKMRAKLYRFDTENDPPEWKERGTGDVKILKHKETNKIRLLMRRDKTLK 63
Query: 343 ICANHFLHQDMELKPMSNTKQAYIWFA-QDYADEV 376
ICANH++ +M+LKP + +A++W D+ADE
Sbjct: 64 ICANHYITPEMKLKPNCGSDRAWVWNTPADFADEE 98
>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain.
Length = 122
Score = 145 bits (368), Expect = 7e-43
Identities = 61/112 (54%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
Query: 176 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 233
V +GEE+E VLF RAKL+RF K+WKERGVG +K+LKNKD GKVR+LMRRD V K+C
Sbjct: 2 VKSGEEDEEVLFSVRAKLFRFDAEVKQWKERGVGDIKILKNKDDGKVRILMRRDQVLKVC 61
Query: 234 ANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFR 285
ANH++ DM LKP+ + ++++W A D+AD EQL +FK E+A+ F+
Sbjct: 62 ANHYITPDMTLKPLAGSDRSWVWTAADFADGEGKPEQLAIRFKTKEEADSFK 113
Score = 131 bits (330), Expect = 3e-37
Identities = 53/91 (58%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 287 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 344
V +GEE+E VLF RAKL+RF K+WKERGVG +K+LKNKD GKVR+LMRRD V K+C
Sbjct: 2 VKSGEEDEEVLFSVRAKLFRFDAEVKQWKERGVGDIKILKNKDDGKVRILMRRDQVLKVC 61
Query: 345 ANHFLHQDMELKPMSNTKQAYIWFAQDYADE 375
ANH++ DM LKP++ + ++++W A D+AD
Sbjct: 62 ANHYITPDMTLKPLAGSDRSWVWTAADFADG 92
>gnl|CDD|241326 cd13172, RanBD2_RanBP2_insect-like, Ran-binding protein 2, Ran
binding domain repeat 2. RanBP2 (also called E3
SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and
nuclear pore complex (NPC) protein Nup358) is a giant
nucleoporin that localizes to the cytosolic face of the
NPC. RanBP2 contains a leucine-rich region, 8
zinc-finger motifs, a cyclophilin A homologous domain,
and 4 RanBDs. Ran is a Ras-like nuclear small GTPase,
which regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. All eukaryotic cells contain RanBP1, but in
vertebrates however, the main RanBP seems to be RanBP2.
There is no RanBP2 ortholog in yeast. Transport complex
disassembly is accomplished by a small ubiquitin-related
modifier-1 (SUMO-1)-modified version of RanGAP that is
bound to RanBP2. RanBP1 acts as a second line of defense
against exported RanGTP-importin complexes which have
escaped from dissociation by RanBP2. RanBP2 also
interacts with the importin subunit beta-1. RabBD shares
structural similarity to the PH domain, but lacks
detectable sequence similarity. The members here include
insects and nematodes. The second RanBD is present in
this hierarchy.
Length = 113
Score = 135 bits (342), Expect = 3e-39
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 183 ETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHKICANHFLH 239
E VLFE RAKL RF KEWKERG+G +KLL+NK D KVRLLMRR+ V K+C N L
Sbjct: 1 EEVLFEHRAKLLRFDKATKEWKERGLGNIKLLRNKEDNNKVRLLMRREQVLKVCCNQRLT 60
Query: 240 QDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERF 284
+DME K + N +A W AQDY++ + E +FK E + F
Sbjct: 61 KDMEFKYLTNNPKALTWCAQDYSEGELKPETFAIRFKTQEICKDF 105
Score = 118 bits (297), Expect = 1e-32
Identities = 49/88 (55%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
Query: 294 ETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHKICANHFLH 350
E VLFE RAKL RF KEWKERG+G +KLL+NK D KVRLLMRR+ V K+C N L
Sbjct: 1 EEVLFEHRAKLLRFDKATKEWKERGLGNIKLLRNKEDNNKVRLLMRREQVLKVCCNQRLT 60
Query: 351 QDMELKPMSNTKQAYIWFAQDYADEVVS 378
+DME K ++N +A W AQDY++ +
Sbjct: 61 KDMEFKYLTNNPKALTWCAQDYSEGELK 88
>gnl|CDD|241331 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding protein 2, Ran
binding domain repeats 2. RanBP2 (also called E3
SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and
nuclear pore complex (NPC) protein Nup358) is a giant
nucleoporin that localizes to the cytosolic face of the
NPC. RanBP2 contains a leucine-rich region, 8
zinc-finger motifs, a cyclophilin A homologous domain,
and 4 RanBDs. Ran is a Ras-like nuclear small GTPase,
which regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. All eukaryotic cells contain RanBP1, but in
vertebrates however, the main RanBP seems to be RanBP2.
There is no RanBP2 ortholog in yeast. Transport complex
disassembly is accomplished by a small ubiquitin-related
modifier-1 (SUMO-1)-modified version of RanGAP that is
bound to RanBP2. RanBP1 acts as a second line of defense
against exported RanGTP-importin complexes which have
escaped from dissociation by RanBP2. RanBP2 also
interacts with the importin subunit beta-1. RabBD shares
structural similarity to the PH domain, but lacks
detectable sequence similarity. The members here include
human, chicken, frog, tunicates, sea urchins, ticks, sea
anemones, and sponges. RanBD repeats 2 is present in
this hierarchy.
Length = 117
Score = 128 bits (322), Expect = 2e-36
Identities = 59/110 (53%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
Query: 178 TGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICAN 235
TGEE+E VL+ QR KL+RF +WKERGVG LK+LKN+ GK+R+LMRR+ V K+CAN
Sbjct: 1 TGEEDEKVLYSQRVKLFRFDAEVSQWKERGVGNLKILKNEVNGKLRMLMRREQVLKVCAN 60
Query: 236 HFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFR 285
H++ M LKP+ + +A++W A D++D EQL AKFK PE AE F+
Sbjct: 61 HWITTTMNLKPLSGSDKAWMWMANDFSDGDAKLEQLAAKFKTPELAEEFK 110
Score = 109 bits (273), Expect = 4e-29
Identities = 48/88 (54%), Positives = 67/88 (76%), Gaps = 2/88 (2%)
Query: 289 TGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICAN 346
TGEE+E VL+ QR KL+RF +WKERGVG LK+LKN+ GK+R+LMRR+ V K+CAN
Sbjct: 1 TGEEDEKVLYSQRVKLFRFDAEVSQWKERGVGNLKILKNEVNGKLRMLMRREQVLKVCAN 60
Query: 347 HFLHQDMELKPMSNTKQAYIWFAQDYAD 374
H++ M LKP+S + +A++W A D++D
Sbjct: 61 HWITTTMNLKPLSGSDKAWMWMANDFSD 88
>gnl|CDD|241327 cd13173, RanBD3_RanBP2_insect-like, Ran-binding protein 2, Ran
binding domain repeat 3. RanBP2 (also called E3
SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and
nuclear pore complex (NPC) protein Nup358) is a giant
nucleoporin that localizes to the cytosolic face of the
NPC. RanBP2 contains a leucine-rich region, 8
zinc-finger motifs, a cyclophilin A homologous domain,
and 4 RanBDs. Ran is a Ras-like nuclear small GTPase,
which regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. All eukaryotic cells contain RanBP1, but in
vertebrates however, the main RanBP seems to be RanBP2.
There is no RanBP2 ortholog in yeast. Transport complex
disassembly is accomplished by a small ubiquitin-related
modifier-1 (SUMO-1)-modified version of RanGAP that is
bound to RanBP2. RanBP1 acts as a second line of defense
against exported RanGTP-importin complexes which have
escaped from dissociation by RanBP2. RanBP2 also
interacts with the importin subunit beta-1. RabBD shares
structural similarity to the PH domain, but lacks
detectable sequence similarity. The members here include
insects and nematodes. The third RanBD is present in
this hierarchy.
Length = 110
Score = 126 bits (319), Expect = 7e-36
Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
Query: 183 ETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM 242
E VL+ RAKL+RFVDKEWKERG+G +K+L++K+TGK+RLLMRRD V KIC NH L +++
Sbjct: 1 EEVLYSHRAKLFRFVDKEWKERGLGDVKILRHKETGKLRLLMRRDQVLKICLNHALTEEL 60
Query: 243 ELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRS 286
E + +++++W A D+++ E+ +FK E A+ F
Sbjct: 61 EFR--KKDEKSWMWAAHDFSEGESELERFAIRFKNAEIAQGFMK 102
Score = 117 bits (295), Expect = 2e-32
Identities = 46/89 (51%), Positives = 68/89 (76%), Gaps = 3/89 (3%)
Query: 294 ETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM 353
E VL+ RAKL+RFVDKEWKERG+G +K+L++K+TGK+RLLMRRD V KIC NH L +++
Sbjct: 1 EEVLYSHRAKLFRFVDKEWKERGLGDVKILRHKETGKLRLLMRRDQVLKICLNHALTEEL 60
Query: 354 ELKPMSNTKQAYIWFAQDYAD-EVVSDRF 381
E + +++++W A D+++ E +RF
Sbjct: 61 EFRK--KDEKSWMWAAHDFSEGESELERF 87
>gnl|CDD|241332 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding protein 2, Ran
binding domain repeats 2 and 4. RanBP2 (also called E3
SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and
nuclear pore complex (NPC) protein Nup358) is a giant
nucleoporin that localizes to the cytosolic face of the
NPC. RanBP2 contains a leucine-rich region, 8
zinc-finger motifs, a cyclophilin A homologous domain,
and 4 RanBDs. Ran is a Ras-like nuclear small GTPase,
which regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. All eukaryotic cells contain RanBP1, but in
vertebrates however, the main RanBP seems to be RanBP2.
There is no RanBP2 ortholog in yeast. Transport complex
disassembly is accomplished by a small ubiquitin-related
modifier-1 (SUMO-1)-modified version of RanGAP that is
bound to RanBP2. RanBP1 acts as a second line of defense
against exported RanGTP-importin complexes which have
escaped from dissociation by RanBP2. RanBP2 also
interacts with the importin subunit beta-1. RabBD shares
structural similarity to the PH domain, but lacks
detectable sequence similarity. The members here include
human, chicken, frog, tunicates, sea urchins, ticks, sea
anemones, and sponges. RanBD repeats 2 and 4 are present
in this hierarchy.
Length = 117
Score = 119 bits (299), Expect = 7e-33
Identities = 53/113 (46%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 178 TGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICA 234
+GEE+E +LF++RAKLYR+ D+ +WKERGVG+LK+L + R+LMRRD V K+CA
Sbjct: 1 SGEEDEEILFKERAKLYRW-DRDVQQWKERGVGELKILFHTQKKYYRILMRRDQVLKVCA 59
Query: 235 NHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSV 287
NH + +++ L P+ + A +W A DYAD EQL +FK E A+ F+ V
Sbjct: 60 NHVISKEITLTPLNTSNNALVWTATDYADGEGKVEQLAVRFKTKELADSFKRV 112
Score = 106 bits (266), Expect = 3e-28
Identities = 44/89 (49%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
Query: 289 TGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICA 345
+GEE+E +LF++RAKLYR+ D+ +WKERGVG+LK+L + R+LMRRD V K+CA
Sbjct: 1 SGEEDEEILFKERAKLYRW-DRDVQQWKERGVGELKILFHTQKKYYRILMRRDQVLKVCA 59
Query: 346 NHFLHQDMELKPMSNTKQAYIWFAQDYAD 374
NH + +++ L P++ + A +W A DYAD
Sbjct: 60 NHVISKEITLTPLNTSNNALVWTATDYAD 88
>gnl|CDD|241328 cd13174, RanBD4_RanBP2_insect-like, Ran-binding protein 2, Ran
binding domain repeat 4. RanBP2 (also called E3
SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and
nuclear pore complex (NPC) protein Nup358) is a giant
nucleoporin that localizes to the cytosolic face of the
NPC. RanBP2 contains a leucine-rich region, 8
zinc-finger motifs, a cyclophilin A homologous domain,
and 4 RanBDs. Ran is a Ras-like nuclear small GTPase,
which regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. All eukaryotic cells contain RanBP1, but in
vertebrates however, the main RanBP seems to be RanBP2.
There is no RanBP2 ortholog in yeast. Transport complex
disassembly is accomplished by a small ubiquitin-related
modifier-1 (SUMO-1)-modified version of RanGAP that is
bound to RanBP2. RanBP1 acts as a second line of defense
against exported RanGTP-importin complexes which have
escaped from dissociation by RanBP2. RanBP2 also
interacts with the importin subunit beta-1. RabBD shares
structural similarity to the PH domain, but lacks
detectable sequence similarity. The members here include
insects and nematodes. The fourth RanBD is present in
this hierarchy.
Length = 113
Score = 113 bits (284), Expect = 9e-31
Identities = 47/108 (43%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 183 ETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ 240
ET LF +RAKLYRF KEWKERGVG++K+L + + RLLMRR+ VHK+ N +
Sbjct: 1 ETKLFGERAKLYRFDADTKEWKERGVGEMKILYHPELNTYRLLMRREQVHKVVLNMLITS 60
Query: 241 DMELKPMPNTKQAYIWFAQDYADEVVSD-EQLCAKFKLPEDAERFRSV 287
D++L+PM + +++ W +YA+ + E L +FK E A +F++V
Sbjct: 61 DLQLRPMNTSDKSFTWGGMNYAEADEPEVETLAVRFKNEEIASQFKNV 108
Score = 100 bits (251), Expect = 5e-26
Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 294 ETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ 351
ET LF +RAKLYRF KEWKERGVG++K+L + + RLLMRR+ VHK+ N +
Sbjct: 1 ETKLFGERAKLYRFDADTKEWKERGVGEMKILYHPELNTYRLLMRREQVHKVVLNMLITS 60
Query: 352 DMELKPMSNTKQAYIWFAQDYAD 374
D++L+PM+ + +++ W +YA+
Sbjct: 61 DLQLRPMNTSDKSFTWGGMNYAE 83
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein)
[Intracellular trafficking and secretion].
Length = 211
Score = 103 bits (258), Expect = 6e-26
Identities = 57/158 (36%), Positives = 88/158 (55%), Gaps = 5/158 (3%)
Query: 131 KQLETSPLIKQSLEQANESDDETPANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQR 190
E LE A DE + + F+P++ L V + T EE+ETVLF+ R
Sbjct: 39 GGEEKKVQQSPFLENAVPEGDEGKGPESPNI-HFEPVVEL-QRVHLKTNEEDETVLFKAR 96
Query: 191 AKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMP 248
AKL+RF + KEWKERG G + +LK+K T K R+ MRRD K+CANHF++ + +L+P
Sbjct: 97 AKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCANHFINPEFKLQPNV 156
Query: 249 NTKQAYIWF-AQDYADEVVSDEQLCAKFKLPEDAERFR 285
+ ++++W D + + +F E+A+RF+
Sbjct: 157 GSDRSWVWMSTADTVEGEAKAQTFAIRFYSEENAKRFK 194
Score = 91.6 bits (227), Expect = 1e-21
Identities = 41/83 (49%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Query: 287 VTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 344
+ T EE+ETVLF+ RAKL+RF + KEWKERG G + +LK+K T K R+ MRRD K+C
Sbjct: 82 LKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLC 141
Query: 345 ANHFLHQDMELKPMSNTKQAYIW 367
ANHF++ + +L+P + ++++W
Sbjct: 142 ANHFINPEFKLQPNVGSDRSWVW 164
>gnl|CDD|241329 cd13175, RanBD5_RanBP2_insect-like, Ran-binding protein 2, Ran
binding domain repeat 5. RanBP2 (also called E3
SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and
nuclear pore complex (NPC) protein Nup358) is a giant
nucleoporin that localizes to the cytosolic face of the
NPC. RanBP2 contains a leucine-rich region, 8
zinc-finger motifs, a cyclophilin A homologous domain,
and 4 RanBDs. Ran is a Ras-like nuclear small GTPase,
which regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. All eukaryotic cells contain RanBP1, but in
vertebrates however, the main RanBP seems to be RanBP2.
There is no RanBP2 ortholog in yeast. Transport complex
disassembly is accomplished by a small ubiquitin-related
modifier-1 (SUMO-1)-modified version of RanGAP that is
bound to RanBP2. RanBP1 acts as a second line of defense
against exported RanGTP-importin complexes which have
escaped from dissociation by RanBP2. RanBP2 also
interacts with the importin subunit beta-1. RabBD shares
structural similarity to the PH domain, but lacks
detectable sequence similarity. The members here include
insects and nematodes. The fifth RanBD is present in
this hierarchy.
Length = 106
Score = 71.4 bits (175), Expect = 2e-15
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 183 ETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ 240
E V+F RAKLYR+ KEWKERGVG++K+L +K R++++ D +I +N +
Sbjct: 1 EEVVFSHRAKLYRYDAETKEWKERGVGEMKILHHKGA---RIVLKDDDTDEILSNTIIAM 57
Query: 241 DMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSV 287
L+ K+ IW A DYA E + A F + A+ F+
Sbjct: 58 QTSLR--VEGKEC-IWSAIDYALEPPTRRTFRATFSSVDAAQEFQVH 101
Score = 63.6 bits (155), Expect = 1e-12
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 294 ETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ 351
E V+F RAKLYR+ KEWKERGVG++K+L +K R++++ D +I +N +
Sbjct: 1 EEVVFSHRAKLYRYDAETKEWKERGVGEMKILHHKGA---RIVLKDDDTDEILSNTIIAM 57
Query: 352 DMELKPMSNTKQAYIWFAQDYADE 375
L+ K+ IW A DYA E
Sbjct: 58 QTSLR--VEGKEC-IWSAIDYALE 78
>gnl|CDD|241335 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding domain. Yeast
protein Nup2 transiently associates with Nuclear pore
complexes (NPCs) and when artificially tethered to DNA,
can prevent the spread of transcriptional activation or
repression between flanking genes, a function termed
boundary activity (BA). Nup2 and the Ran
guanylyl-nucleotide exchange factor, Prp20, interact at
specific chromatin regions and enable the NPC to play an
active role in chromatin organization. Nup60p, the nup
responsible for anchoring Nup2 and the Mlp proteins to
the NPC is required for Nup2-dependent BA. Nup2 contains
an N-terminal Nup50 family domain and a C-terminal
RanBD. Ran is a Ras-like nuclear small GTPase, which
regulates receptor-mediated transport between the
nucleus and the cytoplasm. RanGTP hydrolysis is
stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. RabBD shares structural similarity to the
PH domain, but lacks detectable sequence similarity.
Length = 111
Score = 64.4 bits (157), Expect = 7e-13
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 293 NETVLFEQRAKLYRF--VDKE--WKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHF 348
NE VL+ +RAKL F +KE + +GVG+LKLLKNKDTGK R+L+R + ++ N
Sbjct: 1 NEEVLYTKRAKLMLFDPSNKESPYTSKGVGELKLLKNKDTGKSRILVRAEGSLRVLLNTL 60
Query: 349 LHQDMELKPMSN 360
+ +D++ + M N
Sbjct: 61 VLKDVKYEKMGN 72
Score = 63.6 bits (155), Expect = 1e-12
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 182 NETVLFEQRAKLYRF--VDKE--WKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHF 237
NE VL+ +RAKL F +KE + +GVG+LKLLKNKDTGK R+L+R + ++ N
Sbjct: 1 NEEVLYTKRAKLMLFDPSNKESPYTSKGVGELKLLKNKDTGKSRILVRAEGSLRVLLNTL 60
Query: 238 LHQDMELKPMPN 249
+ +D++ + M N
Sbjct: 61 VLKDVKYEKMGN 72
>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain. NUP50
acts as a cofactor for the importin-alpha:importin-beta
heterodimer, which allows for transportation of many
nuclear-targeted proteins through nuclear pore
complexes. It is thought to function primarily at the
terminal stages of nuclear protein import to coordinate
import complex disassembly and importin recycling. NUP50
is composed of a N-terminal NUP50 domain which binds the
C-terminus of importin-beta, a central domain which
binds importin-beta, and a C-terminal RanBD which binds
importin-beta through Ran-GTP. NUP50:importin-alpha then
binds cargo and can stimulate nuclear import. The
N-terminal domain of NUP50 is also able to displace
nuclear localization signals from importin-alpha. NUP50
interacts with cyclin-dependent kinase inhibitor 1B
which binds to cyclin E-CDK2 or cyclin D-CDK4 complexes
and prevents its activation, thereby controling the cell
cycle progression at G1. Ran is a Ras-like nuclear small
GTPase, which regulates receptor-mediated transport
between the nucleus and the cytoplasm. RanGTP hydrolysis
is stimulated by RanGAP together with the Ran-binding
domain containing acessory proteins RanBP1 and RanBP2.
These accessory proteins stabilize the active GTP-bound
form of Ran. RabBD shares structural similarity to the
PH domain, but lacks detectable sequence similarity.
Length = 109
Score = 63.8 bits (156), Expect = 1e-12
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 183 ETVLFEQRAKLYRFVD-KEWKERGVGQLKLLKNKDTGKVRLLMRRD-IVHKICANHFLHQ 240
E ++ R KL+ D EWK++GVG L L K KDT K RLL+R D + KI N L+
Sbjct: 1 EDAVYSVRCKLFVKKDDGEWKDKGVGTLYLKKVKDTSKARLLVRADTSLGKILLNILLYP 60
Query: 241 DMELKPM 247
M +
Sbjct: 61 GMPVTVT 67
Score = 63.8 bits (156), Expect = 1e-12
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 294 ETVLFEQRAKLYRFVD-KEWKERGVGQLKLLKNKDTGKVRLLMRRD-IVHKICANHFLHQ 351
E ++ R KL+ D EWK++GVG L L K KDT K RLL+R D + KI N L+
Sbjct: 1 EDAVYSVRCKLFVKKDDGEWKDKGVGTLYLKKVKDTSKARLLVRADTSLGKILLNILLYP 60
Query: 352 DMELKPM 358
M +
Sbjct: 61 GMPVTVT 67
>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1.
RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358
kDa nucleoporin, and nuclear pore complex (NPC) protein
Nup358) is a giant nucleoporin that localizes to the
cytosolic face of the NPC. RanBP2 contains a
leucine-rich region, 8 zinc-finger motifs, a cyclophilin
A homologous domain, and 4 RanBDs. Ran is a Ras-like
nuclear small GTPase, which regulates receptor-mediated
transport between the nucleus and the cytoplasm. RanGTP
hydrolysis is stimulated by RanGAP together with the
Ran-binding domain containing acessory proteins RanBP1
and RanBP2. These accessory proteins stabilize the
active GTP-bound form of Ran. All eukaryotic cells
contain RanBP1, but in vertebrates however, the main
RanBP seems to be RanBP2. There is no RanBP2 ortholog in
yeast. Transport complex disassembly is accomplished by
a small ubiquitin-related modifier-1 (SUMO-1)-modified
version of RanGAP that is bound to RanBP2. RanBP1 acts
as a second line of defense against exported
RanGTP#importin complexes which have escaped from
dissociation by RanBP2. RanBP2 also interacts with the
importin subunit beta-1. RabBD shares structural
similarity to the PH domain, but lacks detectable
sequence similarity. The first RanBD2 is present in this
hierarchy.
Length = 112
Score = 55.5 bits (134), Expect = 7e-10
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 183 ETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM 242
E +F L+ F+ WKERG G+L++ + TGK RL+MR +++ N L DM
Sbjct: 1 EKAVFSGDGALFEFITGGWKERGRGELRVNLST-TGKARLVMRAKGNYRLLLNANLFPDM 59
Query: 243 ELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSV 287
+L M K A KFK P E FR+
Sbjct: 60 KLTKMMGGKGVTFACVNAAAGAKAGLSTFALKFKDPAVVEEFRAA 104
Score = 52.0 bits (125), Expect = 1e-08
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 294 ETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM 353
E +F L+ F+ WKERG G+L++ + TGK RL+MR +++ N L DM
Sbjct: 1 EKAVFSGDGALFEFITGGWKERGRGELRVNLST-TGKARLVMRAKGNYRLLLNANLFPDM 59
Query: 354 ELKPMSNTK 362
+L M K
Sbjct: 60 KLTKMMGGK 68
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 43.2 bits (101), Expect = 2e-04
Identities = 41/168 (24%), Positives = 55/168 (32%), Gaps = 27/168 (16%)
Query: 2 ATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQL--------TSSPLG 53
T P P + TTP NAT PT+ T+D + SP + TS P G
Sbjct: 491 RTTSATPNATSPTPAVTTP---NATS--PTTQKTSDTPNATSPTPIVIGVTTTATSPPTG 545
Query: 54 VSTTGTANS---TPIKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSG 110
++ A S T P NT+ + + + T+GQ G S S
Sbjct: 546 TTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHG---------TGSSPTSQ 596
Query: 111 QTTPHKFQIQMPHESLSVIKKQLETSPLIKQSLEQANESDDETPANDH 158
Q P + S L TS E E P+ H
Sbjct: 597 QPGIPSSSHSTPRSN-STSTTPLLTSAHPTGG-ENITEETPSVPSTTH 642
Score = 30.5 bits (68), Expect = 1.8
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 1 PATIKPIPTGP--PPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTG 58
P +PT P PP + T ++++ T PT T+++ + SP T+S +T+
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSP 502
Query: 59 TANSTPIKPSANTS 72
T T ++ T+
Sbjct: 503 TPAVTTPNATSPTT 516
Score = 30.1 bits (67), Expect = 2.3
Identities = 40/167 (23%), Positives = 52/167 (31%), Gaps = 15/167 (8%)
Query: 9 TGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPS 68
G P ST SN+T P TS G +P STT + +P
Sbjct: 598 PGIPSSSHSTP--RSNSTSTTPLLTSAHPT---GGENITEETPSVPSTTHVSTLSPGPGP 652
Query: 69 ANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLN----SSQTGSGQTTPHKFQIQMPHE 124
TS GN +TS G T G N S SGQ T +
Sbjct: 653 GTTS------QVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGK 706
Query: 125 SLSVIKKQLETSPLIKQSLEQANESDDETPANDHDPLPDFKPIIPLP 171
+ S K+ ++ + S + TP N LP P
Sbjct: 707 ANSTTKETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRP 753
>gnl|CDD|222274 pfam13634, Nucleoporin_FG, Nucleoporin FG repeat region. This
family includes a number of FG repeats that are found in
nucleoporin proteins. This family includes the yeast
nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Length = 106
Score = 35.5 bits (82), Expect = 0.007
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 17 STTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPSANTSLGGQ 76
S++ T+ ++ S FG A T+ G G+++S +PS G
Sbjct: 1 SSSTTAGASSGGLFGSAPATGGGLFGQNAANTTPTSGGGLFGSSSSQATQPSGGGLFGSA 60
Query: 77 LNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTTP 114
TS T G + G + + G T
Sbjct: 61 AQTSAT----TTGGGLFGSTTATTTTATGGGLFGNATA 94
Score = 29.8 bits (67), Expect = 0.79
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 7/95 (7%)
Query: 16 SSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPSANTSLGG 75
S+ + +T T+ FGS + + P G G+A T + L G
Sbjct: 16 SAPATGGGLFGQNAANTTPTSGGGLFGSSSSQATQPSGGGLFGSAAQTS-ATTTGGGLFG 74
Query: 76 QLNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSG 110
+ T+ GG + + TG G
Sbjct: 75 STTATT------TTATGGGLFGNATAAQPATTGGG 103
>gnl|CDD|241235 cd00900, PH-like, Pleckstrin homology-like domain. The PH-like
family includes the PH domain, both the Shc-like and
IRS-like PTB domains, the ran-binding domain, the EVH1
domain, a domain in neurobeachin and the third domain of
FERM. All of these domains have a PH fold, but lack
significant sequence similarity. They are generally
involved in targeting to protein to the appropriate
cellular location or interacting with a binding partner.
This domain family possesses multiple functions
including the ability to bind inositol phosphates and to
other proteins.
Length = 88
Score = 35.1 bits (81), Expect = 0.008
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 298 FEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM--EL 355
A K+RG G L + N RL++R ++ + +
Sbjct: 1 CSFSAVRVYCD---GKKRGRGTLFITSN------RLILRDKQDDRLKLKIPISDIVKVNP 51
Query: 356 KPMSNTKQAYIWFAQDYADEVV 377
S++ +A + +D + +
Sbjct: 52 SRASDSDRALVLRLKDKRESLG 73
Score = 33.5 bits (77), Expect = 0.028
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 187 FEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM--EL 244
A K+RG G L + N RL++R ++ + +
Sbjct: 1 CSFSAVRVYCD---GKKRGRGTLFITSN------RLILRDKQDDRLKLKIPISDIVKVNP 51
Query: 245 KPMPNTKQAYIWFAQDYADEVV 266
++ +A + +D + +
Sbjct: 52 SRASDSDRALVLRLKDKRESLG 73
>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
Length = 486
Score = 37.7 bits (87), Expect = 0.009
Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 15 LSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPSANTSLG 74
L+ + S++++ +++ + +P TS+ TGT NST + +T+
Sbjct: 22 LTYASGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQA 81
Query: 75 GQLNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTTPHKFQI 119
Q S T I P S +N + + + ++ +I
Sbjct: 82 SQ-PHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYSEYRLEI 125
>gnl|CDD|241334 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-binding domain.
RanBP3, a Ran-interacting nuclear protein, unlike the
related proteins RanBP1 and RanBP2, which promote
disassembly of the export complex in the cytosol, acts
as a CRM1 cofactor, enhancing nuclear export signal
(NES) export by stabilizing the export complex in the
nucleus. CRM1/Exportin1 is responsible for exporting
many proteins and ribonucleoproteins from the nucleus to
the cytosol. RanBP3 also alters the cargo selectivity of
CRM1, promoting recognition of the NES of HIV-1 Rev and
of other cargos while deterring recognition of the
import adaptor protein Snurportin1. RanBP3 contains a
N-terminal nuclear localization signal (NLS), 2 FxFG
motifs, and a single RanBD. RabBD shares structural
similarity to the PH domain, but lacks detectable
sequence similarity.
Length = 113
Score = 33.7 bits (78), Expect = 0.034
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 182 NETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKV---RLLMR 225
E + + KL+ F + W ERG G L+L RL+MR
Sbjct: 1 GERNVLQINCKLFAFDKSKQSWVERGRGTLRLNDKASEDGPFQSRLVMR 49
Score = 33.7 bits (78), Expect = 0.034
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 293 NETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKV---RLLMR 336
E + + KL+ F + W ERG G L+L RL+MR
Sbjct: 1 GERNVLQINCKLFAFDKSKQSWVERGRGTLRLNDKASEDGPFQSRLVMR 49
>gnl|CDD|221247 pfam11825, Nuc_recep-AF1, Nuclear/hormone receptor activator site
AF-1. Nuclear receptors (NRs) are a family of
ligand-inducible transcription factors, and, like other
transcription factors, they contain a distinct DNA
binding domain that allows for target gene recognition
and several activation domains that possess the ability
to activate transcription. One of these activation
domains is at the N-terminal, although there are two
distinct motifs within this domain, between residues
20-36 and between 74 and the end of this domain, which
are the binding regions. One of the co-activators is
TIF1beta, which appears to bind at the first motif.
Length = 106
Score = 33.6 bits (77), Expect = 0.040
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 8 PTGPPPQLSSTTP----TSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANST 63
P S + S + + P ST ++ + GSP + SS +G S
Sbjct: 2 SLSPSTGRGSMSAPDLHPSLLGSPMGPMSTLSSPINGLGSPYSVISSSMG--------SP 53
Query: 64 PIKPSANTSLG-GQLNTSQIGGNLN---TSGQIGGPLNTSGQLNSSQTGSG 110
+ + LG G ++ QI ++N +S I P +G +N G
Sbjct: 54 SMSLPSTPGLGYGTGSSPQINSSMNSVSSSEDIKPPPGLNGLMNYPSHSPG 104
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 34.1 bits (78), Expect = 0.097
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 2 ATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGS--------PAQLTSSP-L 52
AT K P T P + A+ P +TST K + PAQ T++P
Sbjct: 170 ATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAA 229
Query: 53 GVSTTGTANSTPIKPSANTSLGGQLNTSQIGGNLN 87
G T G S PS++ +L QL++S NLN
Sbjct: 230 GGKTAGNVGSLKSAPSSHYTL--QLSSSSNYDNLN 262
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 33.5 bits (77), Expect = 0.15
Identities = 15/82 (18%), Positives = 20/82 (24%), Gaps = 8/82 (9%)
Query: 2 ATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTAN 61
P P ++ T + + A P A + S V T T
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQ-----QNAVVAPSQANVDTAATPA 224
Query: 62 STPIKPSANTSLGGQLNTSQIG 83
A L T Q G
Sbjct: 225 PA---APATPDGAAPLPTDQAG 243
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 33.2 bits (75), Expect = 0.27
Identities = 39/156 (25%), Positives = 56/156 (35%), Gaps = 34/156 (21%)
Query: 6 PIPTGPPPQLSSTTPTSSNA------TKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGT 59
IP P LSS PT S T IPP + +F A L +++
Sbjct: 1180 GIPA--PQLLSSYIPTGSVLYQDPIFTYIPPGIIGMSGTNTFTFKA--AQLQLSAASSPP 1235
Query: 60 ANSTPIKP--SANTSLGGQLNTS--QIGGNLNTSGQIGGPL------------------- 96
A +TP P S+++S ++TS QI LN S I
Sbjct: 1236 AATTPTPPPSSSSSSSAQSISTSPGQIQIVLNGSTTIHINFLFFPALSTPKIGQILAMPI 1295
Query: 97 -NTSGQLNSSQTGSGQTTPHKFQIQMPHESLSVIKK 131
N+SG S S + I+ + +VIK+
Sbjct: 1296 VNSSGAFISLYVNSAISANFNVTIEYVFSNGTVIKR 1331
>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein. This family of
trypanosomal proteins resemble vertebrate mucins. The
protein consists of three regions. The N and C terminii
are conserved between all members of the family, whereas
the central region is not well conserved and contains a
large number of threonine residues which can be
glycosylated. Indirect evidence suggested that these
genes might encode the core protein of parasite mucins,
glycoproteins that were proposed to be involved in the
interaction with, and invasion of, mammalian host cells.
This family contains an N-terminal signal peptide.
Length = 143
Score = 31.8 bits (71), Expect = 0.29
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 9 TGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPS 68
G +TT T++ T+T+T + + T++ +TT T P K +
Sbjct: 40 EGQSQ---TTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNT 96
Query: 69 ANTSLGGQLNTSQIGGNLNTSGQIGGPL 96
+ +T G +G
Sbjct: 97 TTSEAPTTTDTRAPSSIREIDGSLGSSA 124
Score = 31.4 bits (70), Expect = 0.37
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 9 TGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPS 68
Q ++TT T++ PPT+T+T + T + +TT T +T PS
Sbjct: 39 AEGQSQTTTTTTTTT-----PPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPS 93
Query: 69 ANTS 72
NT+
Sbjct: 94 KNTT 97
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 33.0 bits (75), Expect = 0.32
Identities = 34/193 (17%), Positives = 54/193 (27%), Gaps = 18/193 (9%)
Query: 1 PATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTA 60
P T P PP ++ P + S S + S PA ++ L +
Sbjct: 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
Query: 61 NSTPIKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLN----SSQTGSGQTTPHK 116
++P P + G S +GG + G + S + P +
Sbjct: 2821 AASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880
Query: 117 F--------QIQMPHESLSVIKKQLE-----TSPLIKQSLEQANESDDETPANDHDPLPD 163
+ ES ++ Q E +P Q Q P P P
Sbjct: 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ 2940
Query: 164 FKPIIPLPDEVPV 176
P+ P D
Sbjct: 2941 -PPLAPTTDPAGA 2952
Score = 28.8 bits (64), Expect = 6.1
Identities = 24/118 (20%), Positives = 32/118 (27%), Gaps = 11/118 (9%)
Query: 6 PIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPI 65
+P GP P T PP A P + + P S + + S P
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAA--PAAGPPRRLTRPAVASLSESRESLPS 2800
Query: 66 K------PSANTSLGGQLNTSQIGGNLN---TSGQIGGPLNTSGQLNSSQTGSGQTTP 114
P+A + L + TS Q P G S G P
Sbjct: 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858
Score = 28.4 bits (63), Expect = 8.2
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 1 PATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTA 60
PA+ P P P P S P S + PP A ++ +
Sbjct: 424 PASAPPPPATPLP---SAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRER 480
Query: 61 NSTPIKPSAN 70
P P A+
Sbjct: 481 RP-PEPPGAD 489
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 32.4 bits (73), Expect = 0.41
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 10/83 (12%)
Query: 1 PATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLG------- 53
A P S T T ++A + +DV G+ A + P+
Sbjct: 321 AAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMS 380
Query: 54 ---VSTTGTANSTPIKPSANTSL 73
+ T N T TSL
Sbjct: 381 TTETQQSSTGNITSTANGPTTSL 403
Score = 28.9 bits (64), Expect = 5.1
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 4/109 (3%)
Query: 5 KPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTP 64
+P S+ T +S+ I P+S + S S+ ++ +S
Sbjct: 297 GTVPVAAVTPSSAVTQSSA----ITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAG 352
Query: 65 IKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTT 113
+ PS T G + N+ S N + T +G TT
Sbjct: 353 VLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTT 401
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 31.8 bits (71), Expect = 0.63
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 2 ATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTAN 61
A P PP ++ P + A P + A K+ PA+ + P +T
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAA---APAKAAAAPAKAAAPPAKAAAPPAKAATPPAKA 337
Query: 62 STPIKPSANTSLG 74
+ P +A +G
Sbjct: 338 AAPPAKAAAAPVG 350
Score = 31.5 bits (70), Expect = 0.80
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 2 ATIKPIPTGPPPQLSSTTPTSSNA----TKIPPTSTSTADVKSFGSPAQLTSSPLGVSTT 57
A P P ++ P + A PP +T K+ PA+ ++P+G
Sbjct: 295 AAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGKKAG 354
Query: 58 G 58
G
Sbjct: 355 G 355
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional.
Length = 796
Score = 31.7 bits (72), Expect = 0.65
Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 7/131 (5%)
Query: 8 PTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGS-PAQLTSSPLGVSTTGTANSTPIK 66
+ P S ++ + +AT+ P S+ + S A +S+ L + S
Sbjct: 17 SSSRPQLSSFSSRSPQSATRSPRASSIKCSASASASSSATSSSASLVANGAVALLSASAI 76
Query: 67 PSANTSLGGQLNTSQIGGNLNTSGQIGGP----LNTSGQLNSSQTGSGQTTPHKFQ--IQ 120
GG GG G G L ++ + SG H I
Sbjct: 77 SGGGGGGGGGFGGFGGGGGGGGGGGGGWRFWLRLFAPADAHADEEQSGDWDSHGLPVNIT 136
Query: 121 MPHESLSVIKK 131
+P LS K+
Sbjct: 137 VPLSKLSGFKR 147
>gnl|CDD|215496 PLN02918, PLN02918, pyridoxine (pyridoxamine) 5'-phosphate
oxidase.
Length = 544
Score = 31.8 bits (72), Expect = 0.70
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 6 PIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPI 65
P+P PPP SS+ +S + + F +P+Q + P T + P
Sbjct: 19 PLPISPPPPHSSSLSSSP------------SPTQRFLTPSQGSRLPPRRRALCTKSQDPR 66
Query: 66 KPSANTSLGGQLNTSQIG 83
A SL N G
Sbjct: 67 WRRAMASLAVIPNMQDSG 84
>gnl|CDD|234371 TIGR03839, termin_org_P1, adhesin P1. Members of this protein family
are the major adhesin of the Mycoplasma terminal
organelle. The protein is called adhesin P1, cytadhesin
P1, P140, attachment protein, and MgPa, with locus names
MG191 in Mycoplasma genitalium and MPN141 in M.
pneumoniae. A conserved C-terminal region is shared by
additional paralogs in M. pneumoniae and M.
gallisepticum, as well as by the member of this family
[Cell envelope, Surface structures, Cellular processes,
Pathogenesis].
Length = 1425
Score = 31.7 bits (71), Expect = 0.80
Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 8/143 (5%)
Query: 8 PTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKP 67
T + TPT+ + T+ + L + P+ V+T+G +
Sbjct: 874 ATNYTNLPPNLTPTADWLNALTFTNKNNDQRDQLFLRGLLGNIPVLVNTSGNNTNKFQAT 933
Query: 68 SANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQ---LNSSQTGSGQTTPHKFQIQMPHE 124
+ T Q+GGNL T G++ G NT+ N ++ G TP I E
Sbjct: 934 DQKWT-----YTYQVGGNLPTWGEVNGLYNTALNITYYNLTRGDFGSNTPSTPGIGFKPE 988
Query: 125 SLSVIKKQLETSPLIKQSLEQAN 147
+ L +S L + N
Sbjct: 989 QNNDSDATLVSSGLNWTPQDVGN 1011
>gnl|CDD|233974 TIGR02682, cas_csx11, CRISPR-associated protein, Csx11 family.
Members of this uncommon, sporadically distributed
protein family are large (>900 amino acids) and strictly
associated, so far, with CRISPR-associated (Cas) gene
clusters. Nearby Cas genes always include members of the
RAMP superfamily and the six-gene CRISPR-associated RAMP
module. Species in which it is found, so far, include
three archaea (Methanosarcina mazei, M. barkeri and
Methanobacterium thermoautotrophicum) and two bacteria
(Thermodesulfovibrio yellowstonii DSM 11347 and
Sulfurihydrogenibium azorense) [Mobile and
extrachromosomal element functions, Other].
Length = 918
Score = 31.0 bits (70), Expect = 1.3
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 244 LKPMPNTKQAYIW--FAQDYADE----VVSDEQLCAKFKLPEDAERFRSVTTGEENETVL 297
LK W + + V KF + +R EE+E
Sbjct: 533 LKEELEGDGLLFWALPSINIDKTDIYLVSVIHDFIGKFATKDSLKRLNENNLEEEDENNF 592
Query: 298 FEQRAKLYRFVDKEWKERGVGQLKLLKNKD 327
+++ KL ++ DKE + + L L+ +
Sbjct: 593 EDKKIKLKKYEDKENRN-TISNLCSLQKSE 621
>gnl|CDD|219927 pfam08601, PAP1, Transcription factor PAP1. The transcription
factor Pap1 regulates antioxidant-gene transcription in
response to H2O2. This region is cysteine rich.
Alkylation of cysteine residues following treatment with
a cysteine alkylating agent can mask the accessibility
of the nuclear exporter Crm1, triggering nuclear
accumulation and Pap1 dependent transcriptional
expression.
Length = 344
Score = 30.7 bits (69), Expect = 1.3
Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 20/176 (11%)
Query: 11 PPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPSAN 70
P + TS ++ + S + A S + A T+SP G+ ++ T ++ S++
Sbjct: 69 SSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANASAASTNSPNGLQSSATQYNSNDNSSSD 128
Query: 71 TSLGGQLN-TSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTTPHKFQIQMPHESLSVI 129
+ G T+Q+ +L TS + P S Q S + ++
Sbjct: 129 SPSSGSDGFTNQLLSSLGTSPE---PSTES----PPQLASVNNFAAIRNNAESNSNVPSA 181
Query: 130 KKQLETSPLIKQSLEQAN------------ESDDETPANDHDPLPDFKPIIPLPDE 173
P I L E D ++D DP F +PD
Sbjct: 182 ASSTPNIPGIDFLLAFPGGQFDPELFGDYREPQDANLSDDFDPNGLFNDEFSMPDP 237
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 30.8 bits (69), Expect = 1.4
Identities = 29/165 (17%), Positives = 46/165 (27%), Gaps = 19/165 (11%)
Query: 3 TIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFG------------SPAQLTSS 50
T P P S TP S AT+ T+T+ + S Q
Sbjct: 178 TSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPP 237
Query: 51 PLGVSTTGTANSTPIKPSANTSLGGQLN-------TSQIGGNLNTSGQIGGPLNTSGQLN 103
P +G+ P S + S G T N + P T+ +
Sbjct: 238 PSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQE 297
Query: 104 SSQTGSGQTTPHKFQIQMPHESLSVIKKQLETSPLIKQSLEQANE 148
+ + T + PH S ++ T L+ +
Sbjct: 298 TGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKELDPPK 342
>gnl|CDD|191251 pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24).
This family consists of several MGC-24 (or Cd164
antigen) proteins from eukaryotic organisms.
MGC-24/CD164 is a sialomucin expressed in many normal
and cancerous tissues. In humans, soluble and
transmembrane forms of MGC-24 are produced by
alternative splicing.
Length = 187
Score = 30.0 bits (67), Expect = 1.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 13 PQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPS 68
+++TTP +N+T P + S S +TS P +TT T S P + S
Sbjct: 108 CSVATTTPVPTNSTAKPTITPSPTT-----SHHHVTSEP-KTNTTVTPTSQPDRKS 157
>gnl|CDD|184285 PRK13733, PRK13733, conjugal transfer protein TraV; Provisional.
Length = 171
Score = 29.7 bits (67), Expect = 1.6
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 10 GPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKP 67
G + T T++ + P T+T + K T++ + ++ TP+ P
Sbjct: 68 GNFRTMPVQTVTATTPSGSRPAVTATPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTP 125
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 30.7 bits (69), Expect = 1.7
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 143 LEQANESDDETPANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWK 202
LE +++SD+E+ +++D LP FKP+ ++ + E+ + L E ++ K+W+
Sbjct: 392 LEDSSDSDEESGEDEYDQLPPFKPL--TKAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWR 449
Query: 203 E 203
E
Sbjct: 450 E 450
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 30.3 bits (68), Expect = 2.1
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 111 QTTPHKFQIQMPHESLSVIKKQLETSPLIKQSLEQANESDDETPANDH------DPLPDF 164
+ T +F + +E L V + P NE D P ++ D +PD
Sbjct: 305 RPTDDEFAVPNFNEGLDVPDNPQDPVP-------PPNEGKDGNPNEENLFPPGDDEVPDE 357
Query: 165 KPIIPLPDEVPVTTGEENE 183
+ P P VP + E
Sbjct: 358 SNVPPNPPNVPGGSNSEFS 376
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 29.8 bits (67), Expect = 3.0
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 3 TIKPIPTGPPPQLSSTTPTSS------NATKIPPTSTSTADVKSFGSPAQLTSSPLGVST 56
+ P + TTP S + T+ P +T+ A+ S A+ TS P +T
Sbjct: 31 IVTTTPA-TSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAE-TSDPTSEAT 88
Query: 57 TGTANSTPIKPSANTS 72
T + A T
Sbjct: 89 DTTTSEARTVTPAATE 104
>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS
box-containing transcription factors [Transcription].
Length = 412
Score = 29.2 bits (65), Expect = 4.2
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 7/161 (4%)
Query: 7 IPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIK 66
P P S S IP + T + S + P + G + +
Sbjct: 179 DPNDNNPMGSFQHNGSPQTNFIPLQNPQTQQYQQHSSRKDHPTVPHSNTNNGRPPAKFMI 238
Query: 67 P---SANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTTPHKFQIQMPH 123
P S++++L + G N S PL+++ + P + + ++
Sbjct: 239 PELHSSHSTLDLPSDFISDSGFPNQSSTSIFPLDSAII-QITPPHLPNNPPQENRHELYS 297
Query: 124 ESLSVIKKQLETSPLIKQSLEQANESDDETPANDHDPLPDF 164
S++ + L S N+S + + P+
Sbjct: 298 NDSSMVSETPPPKNLPNGSP---NQSPLNNLSRGNPASPNS 335
>gnl|CDD|185219 PRK15319, PRK15319, AIDA autotransporter-like protein ShdA;
Provisional.
Length = 2039
Score = 29.3 bits (65), Expect = 4.5
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 55 STTGTANSTPIKPSANTSLGGQLNTS 80
+T TANS+PI +AN +L G LN S
Sbjct: 490 ATLDTANSSPIIKAANVTLDGTLNLS 515
>gnl|CDD|202582 pfam03248, Rer1, Rer1 family. RER1 family protein are involved in
involved in the retrieval of some endoplasmic reticulum
membrane proteins from the early golgi compartment. The
C terminus of yeast Rer1p interacts with a coatomer
complex.
Length = 175
Score = 28.3 bits (64), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 136 SPLIKQSLEQANESDDETPANDHDPLPDFKPIIP-LP 171
+P SLEQ +E +E P+ +F+P I LP
Sbjct: 69 TPKFDPSLEQEDEDVEEGPSLPTSNDDEFRPFIRRLP 105
>gnl|CDD|171679 PRK12717, flgL, flagellar hook-associated protein FlgL;
Provisional.
Length = 523
Score = 28.9 bits (65), Expect = 5.2
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 14 QLSSTTPTSSNATKIP-PTS------TSTADVKSFGSPAQLTSSPL--GVSTTGTANSTP 64
Q++ T T A P+S TS + + P S P+ G T TA +
Sbjct: 321 QVTGATITDPAAYNSTFPSSGAVLKFTSATAYELYAQPVTADSKPISSGTLTGNTATAAG 380
Query: 65 IK------PSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTS 99
+ P+A Q NT Q L+T Q+ L+T
Sbjct: 381 VTFTLSGTPAAGDQFSVQANTHQTQNILDTLSQLRKALSTP 421
>gnl|CDD|227270 COG4934, COG4934, Predicted protease [Posttranslational modification,
protein turnover, chaperones].
Length = 1174
Score = 29.0 bits (65), Expect = 5.4
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 46 QLTSSPL--GVSTTGTANSTPIKPSANTSLGGQLNTSQIGGNLNTSGQIGGPLNTSGQLN 103
S L +S+T + PS +N+ GN I + SG
Sbjct: 1039 NSALSNLIVSLSSTTVPIIKNVLPSLVYGEYNIINSYT--GNDFGVITIVISNSPSGSYP 1096
Query: 104 SSQTGSGQT 112
S+ + QT
Sbjct: 1097 STLYNTDQT 1105
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.0 bits (65), Expect = 5.6
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 ATIKPIPTGPPP--QLSSTTPT----SSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVS 55
++ P+ P Q + T PT A + P ST+ V+ + VS
Sbjct: 405 SSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS 464
Query: 56 TTGTANSTPIKPSA 69
+ G + PI+ A
Sbjct: 465 SLGPSTLRPIQEKA 478
>gnl|CDD|183761 PRK12806, PRK12806, flagellin; Provisional.
Length = 475
Score = 28.9 bits (64), Expect = 5.7
Identities = 17/98 (17%), Positives = 30/98 (30%)
Query: 22 SSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIKPSANTSLGGQLNTSQ 81
S A+ I +T+T + + +T + G + T +S + N
Sbjct: 163 SIKASSIGGIATATGTEVAGAAATDITIAIGGGAATSINSSANFTGALNGQDATSAYAKA 222
Query: 82 IGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTTPHKFQI 119
N G + +TSG G + I
Sbjct: 223 AAINDAGIGGLSVTASTSGTQAVGAIGGTAGDTYNLTI 260
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 26.9 bits (60), Expect = 5.9
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 79 TSQIGGNLNTSGQIGGPLNTSGQLNSSQTGSGQTT 113
S G N ++S +S +S + SG
Sbjct: 26 VSSSGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRI 60
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 28.7 bits (64), Expect = 6.0
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 3 TIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTG 58
I T SS +PT + + TST+T SP+Q T+
Sbjct: 805 VITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTT-----SPSQTTTGGGICGPIV 855
Score = 28.3 bits (63), Expect = 9.0
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 12/76 (15%)
Query: 7 IPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPIK 66
T + +S T + TS+ + + + +TT T+
Sbjct: 793 SNTSILIETTSVVITKTVTQTQTTTSSPSP------TQTTSPTQTSTSTTTTTS------ 840
Query: 67 PSANTSLGGQLNTSQI 82
PS T+ GG I
Sbjct: 841 PSQTTTGGGICGPIVI 856
>gnl|CDD|220792 pfam10513, EPL1, Enhancer of polycomb-like. This is a family of
EPL1 (Enhancer of polycomb-like) proteins. The EPL1
protein is a member of a histone acetyltransferase
complex which is involved in transcriptional activation
of selected genes.
Length = 145
Score = 27.8 bits (62), Expect = 6.1
Identities = 15/92 (16%), Positives = 29/92 (31%)
Query: 116 KFQIQMPHESLSVIKKQLETSPLIKQSLEQANESDDETPANDHDPLPDFKPIIPLPDEVP 175
+ + + K P I +E+ E + K IP P+
Sbjct: 11 PLPVFREEDLPDLEKSADIEVPQIPTGVEKEEEWEKHLQVPISAAQVAKKLYIPTPEARE 70
Query: 176 VTTGEENETVLFEQRAKLYRFVDKEWKERGVG 207
+ ++ F++ RF +K +E G
Sbjct: 71 IEDYDKPYAPKFKRPKSYIRFSEKSVEELDSG 102
>gnl|CDD|180276 PRK05820, deoA, thymidine phosphorylase; Reviewed.
Length = 440
Score = 28.6 bits (65), Expect = 6.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 256 WFAQDYADEVVSDEQLCA 273
WF Y D VSD Q+ A
Sbjct: 24 WFIDGYTDGTVSDGQIAA 41
>gnl|CDD|221981 pfam13205, Big_5, Bacterial Ig-like domain.
Length = 103
Score = 26.9 bits (60), Expect = 6.4
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 12 PPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVS---TTGTANSTPIKPS 68
P + STTP AT + + T +F P S + + + S
Sbjct: 4 APTVVSTTPA-DGATNVAVNTKITV---TFSEPVDPGSVTAAIVITLSDAVGVAVTGTVS 59
Query: 69 ANT 71
T
Sbjct: 60 GKT 62
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 28.4 bits (63), Expect = 7.0
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 1 PATIKPIPTGPPPQLSSTTPTSSNATKIPPTSTSTADVKSFGSPAQLTSSPLGVSTTGT- 59
PAT P PT TTPT S T P ST+ + + Q ++P T
Sbjct: 205 PAT--PRPTPRTTASPETTPTPSTTT--SPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPP 260
Query: 60 ---ANSTPIKPSANTSLGG--QLNTSQI 82
P + +L +QI
Sbjct: 261 TPGGGEAPPANATPAPEASRYELTVTQI 288
>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional.
Length = 292
Score = 28.1 bits (62), Expect = 7.2
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 8 PTGPPPQLSSTTPTSSNATKIP--PTSTSTADVKSFGSPAQLTSSPLGVSTTGTANSTPI 65
P PQ+ T P + AT +P P +T+ A K+ + + S P
Sbjct: 103 PVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADEAPAHNPESVPT 162
Query: 66 KPSANTS 72
+ + T+
Sbjct: 163 RAARETT 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.130 0.379
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,156,892
Number of extensions: 1798239
Number of successful extensions: 1641
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1522
Number of HSP's successfully gapped: 121
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.0 bits)