RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15646
(388 letters)
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 166 bits (423), Expect = 1e-51
Identities = 65/126 (51%), Positives = 92/126 (73%), Gaps = 2/126 (1%)
Query: 164 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKVR 221
F+P++PLPD++ V TGEE+E F RAKL+RF KEWKERG+G +K+L++K +GK+R
Sbjct: 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIR 61
Query: 222 LLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDA 281
LLMRR+ V KICANH++ DM+L P + ++++W A DYADE+ EQL +FK PE+A
Sbjct: 62 LLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEA 121
Query: 282 ERFRSV 287
F+
Sbjct: 122 ALFKCK 127
Score = 126 bits (317), Expect = 6e-36
Identities = 53/102 (51%), Positives = 73/102 (71%), Gaps = 6/102 (5%)
Query: 276 KLPEDAERFRSVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKVRL 333
LP+ E V TGEE+E F RAKL+RF KEWKERG+G +K+L++K +GK+RL
Sbjct: 7 PLPDKIE----VKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRL 62
Query: 334 LMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQDYADE 375
LMRR+ V KICANH++ DM+L P + + ++++W A DYADE
Sbjct: 63 LMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADE 104
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 153 bits (389), Expect = 2e-46
Identities = 64/136 (47%), Positives = 88/136 (64%), Gaps = 8/136 (5%)
Query: 157 DHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD----KEWKERGVGQLKLL 212
+HDP F+PI+ LP E + T EE+E LF+ RAKL+RF EWKERG G +KLL
Sbjct: 1 NHDP--QFEPIVSLP-EQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLL 57
Query: 213 KNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQ-DYADEVVSDEQL 271
K+K+ G +RLLMRRD KICANH++ MELKP + +A++W D+ADE E L
Sbjct: 58 KHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELL 117
Query: 272 CAKFKLPEDAERFRSV 287
+F E+A++F++
Sbjct: 118 AIRFLNAENAQKFKTK 133
Score = 115 bits (290), Expect = 7e-32
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
Query: 287 VTTGEENETVLFEQRAKLYRFVD----KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHK 342
+ T EE+E LF+ RAKL+RF EWKERG G +KLLK+K+ G +RLLMRRD K
Sbjct: 17 IKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLK 76
Query: 343 ICANHFLHQDMELKPMSNTKQAYIWFAQDYADE 375
ICANH++ MELKP + + +A++W +
Sbjct: 77 ICANHYITPMMELKPNAGSDRAWVWNTHADFAD 109
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 134 bits (338), Expect = 4e-39
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 169 PLPDEVPVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLL----KNKDTGKVRL 222
L ++V V TGEE E+ + + + KL+ F + W ERG G L+L + T + RL
Sbjct: 5 CLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRL 64
Query: 223 LMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAE 282
+MR ++ N L M++ ++++ A D D+ V + + +
Sbjct: 65 VMRTQGSLRLILNTKLWAQMQIDKA--SEKSIHITAMDTEDQGV--KVFLISASSKDTGQ 120
Query: 283 RFRSV 287
+ ++
Sbjct: 121 LYAAL 125
Score = 113 bits (283), Expect = 5e-31
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 273 AKFKLPEDAERFRSVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLL----KNK 326
A+ L E E V TGEE E+ + + + KL+ F + W ERG G L+L +
Sbjct: 2 ARKCLLEKVE----VITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDD 57
Query: 327 DTGKVRLLMRRDIVHKICANHFLHQDMELKPMSNTKQAYIWFAQDYADEVV 377
T + RL+MR ++ N L M++ S + A D D+ V
Sbjct: 58 GTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEK--SIHITAMDTEDQGV 106
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 118
Score = 130 bits (328), Expect = 7e-38
Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 183 ETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ 240
E VL+ QR KL+RF +WKERG+G LK+LKN+ GK+R+LMRR+ V K+CANH++
Sbjct: 1 EKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITT 60
Query: 241 DMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFRSV 287
M LKP+ + +A++W A D++D EQL AKFK PE AE F+
Sbjct: 61 TMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQK 107
Score = 110 bits (277), Expect = 2e-30
Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 294 ETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ 351
E VL+ QR KL+RF +WKERG+G LK+LKN+ GK+R+LMRR+ V K+CANH++
Sbjct: 1 EKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITT 60
Query: 352 DMELKPMSNTKQAYIWFAQDYADE 375
M LKP+S + +A++W A D++D
Sbjct: 61 TMNLKPLSGSDRAWMWLASDFSDG 84
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 95.0 bits (236), Expect = 1e-24
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 18/112 (16%)
Query: 182 NETVLFEQRAKLYRFVD--KEWKERGVGQL-----KLLKNKDTGKVRLLMRRDIV-HKIC 233
+ETV+ RA + + D K W G G ++ N R++ R+ ++
Sbjct: 2 SETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVV 61
Query: 234 ANHFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFR 285
N + + ++ ++ + + F EDA +F
Sbjct: 62 INCAIVRGVKYNQA----------TPNFHQWRDARQVWGLNFGSKEDAAQFA 103
Score = 78.5 bits (193), Expect = 1e-18
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 293 NETVLFEQRAKLYRFVD--KEWKERGVGQL-----KLLKNKDTGKVRLLMRRDIV-HKIC 344
+ETV+ RA + + D K W G G ++ N R++ R+ ++
Sbjct: 2 SETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVV 61
Query: 345 ANHFLHQDMELKPMSNTKQAY 365
N + + ++ + +
Sbjct: 62 INCAIVRGVKYNQATPNFHQW 82
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 87.7 bits (217), Expect = 6e-22
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 182 NETVLFEQRAKLYRFVD--KEWKERG----VGQLKLLKNKDTGKVRLLMRRDIVHKICAN 235
+E + + RA + + D K+W G ++ + + R++ R+ H++ N
Sbjct: 1 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVIN 60
Query: 236 HFLHQDMELKPMPNTKQAYIWFAQDYADEVVSDEQLCAKFKLPEDAERFR 285
+ + ++ T+ + W + + F EDA F
Sbjct: 61 CAIPKGLKYNQA--TQTFHQW--------RDARQVYGLNFGSKEDANVFA 100
Score = 75.8 bits (186), Expect = 1e-17
Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 293 NETVLFEQRAKLYRFVD--KEWKERG----VGQLKLLKNKDTGKVRLLMRRDIVHKICAN 346
+E + + RA + + D K+W G ++ + + R++ R+ H++ N
Sbjct: 1 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVIN 60
Query: 347 HFLHQDMELKPMSNTKQAYIWFAQD 371
+ + ++ + T + W
Sbjct: 61 CAIPKGLKYNQATQT--FHQWRDAR 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.379
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,369,188
Number of extensions: 62048
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 15
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.9 bits)