BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15648
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/420 (28%), Positives = 200/420 (47%), Gaps = 61/420 (14%)
Query: 10 YDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQ 69
Y +YY+W+ GK + + PNNW + FSGSAW YDE +YLH FS KQPDLN+ ++K++
Sbjct: 122 YRDYYIWRPGK---EGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVR 178
Query: 70 EAMEAVLRFWLDKGIDGWRIDALKHMF-EAG----DFKDEKYKPGKEGSMNYDDL---IH 121
+ + +++FWL+KGIDG+R+D + + E G + ++E Y G + MN ++ +H
Sbjct: 179 QDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLH 238
Query: 122 DKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPF 181
+ ++ Y+I+ G + E K + R F
Sbjct: 239 EMNEEVLSHYDIMT------------VGEMPGVTTEE-------AKLYTGEERKELQMVF 279
Query: 182 NFQ-LVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGK 240
F+ + LD +G + V + ++ +++ L G ++ ++NHD PRV +R G
Sbjct: 280 QFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHTGWNSLYWNNHDQPRVVSRFGN 339
Query: 241 E----LADAYLMISLL--MPGVGVTYYGDEIGMEGPLVRN-DERRDPNNAGGARAD---- 289
+ + A ++ ++L M G Y G+EIGM + DE RD +
Sbjct: 340 DGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVMER 399
Query: 290 -------------ETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADW 336
+ RD RTPMQWD HAGF+T + W+ VNPNY +NV+ +
Sbjct: 400 GEDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTG-EPWITVNPNYKEINVKQAIQNKD 458
Query: 337 STYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRAAN----MLLTEMKRERAKFE 391
S + Y+KL +LR+ + ++YG+ + N + R +++ E FE
Sbjct: 459 SIFYYYKKLIELRKNNEIVVYGSYDLILENNPSIFAYVRTYGVEKLLVIANFTAEECIFE 518
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 27/190 (14%)
Query: 393 YDNHDNPRVTNRLGKE----LADAYLMISLL--MPGVGVTYYGDEIGMEGPLVRN-DERR 445
++NHD PRV +R G + + A ++ ++L M G Y G+EIGM + DE R
Sbjct: 325 WNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYR 384
Query: 446 DPNNAGGARAD-----------------ETRDPERTPMQWDSTKHAGFSTARKTWLPVNP 488
D + + RD RTPMQWD HAGF+T + W+ VNP
Sbjct: 385 DIETLNMYKEKVMERGEDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTG-EPWITVNP 443
Query: 489 NYYYLNVEAQKKADWSTYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRSMPGND 547
NY +NV+ + S + Y+KL +LR+ + ++YG+ + N + R+ G +
Sbjct: 444 NYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVYGSYDLILENNPSIFAYVRTY-GVE 502
Query: 548 TYIVLINFNS 557
+V+ NF +
Sbjct: 503 KLLVIANFTA 512
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 177/389 (45%), Gaps = 71/389 (18%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
P ++Y+W++GK PNNW S+F GSAW YDE +YLH F KQPDLN+ + ++
Sbjct: 121 PKRDWYIWRDGK---DGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEV 177
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKD------EKYKPGKEGSMNYDDLIHD 122
++A+ ++ +WLDKGIDG+RIDA+ H+ + D KY P G MN ++ +
Sbjct: 178 RQALYEMVNWWLDKGIDGFRIDAISHIKKKPGLPDLPNPKGLKYVPSFAGHMNQPGIM-E 236
Query: 123 KTTDLPEL----YEILVKWRA---LVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRP 175
+L E Y+I+ A VDE +Q G + N + F++ G
Sbjct: 237 YLRELKEQTFARYDIMTVGEANGVTVDEAEQWVGEE--------NGVFNMIFQFEHLGL- 287
Query: 176 AAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVT 235
++ D R L L + K L G + +NHD PR
Sbjct: 288 -------WERRADGSIDVRRLKRTLTKWQK---------GLENRGWNALFLENHDLPRSV 331
Query: 236 NRLGK------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARAD 289
+ G E A A + M G Y G EIGM VR D+ RD + R
Sbjct: 332 STWGNDRDYWAESAKALGALYFFMQGTPFIYQGQEIGMTN--VRFDDIRDYRDVSALRLY 389
Query: 290 ET-------------------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEA 330
E RD RTPMQW +AGF+T W+ VN NY +NVEA
Sbjct: 390 ELERAKGRTHEEAMTIIWKTGRDNSRTPMQWSGASNAGFTTG-TPWIKVNENYRTINVEA 448
Query: 331 QKKADWSTYKLYRKLSQLRRTDTM-IYGA 358
+++ S + YR++ QLR+ + + +YG
Sbjct: 449 ERRDPNSVWSFYRQMIQLRKANELFVYGT 477
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 30/189 (15%)
Query: 394 DNHDNPRVTNRLGK------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDP 447
+NHD PR + G E A A + M G Y G EIGM VR D+ RD
Sbjct: 323 ENHDLPRSVSTWGNDRDYWAESAKALGALYFFMQGTPFIYQGQEIGMTN--VRFDDIRDY 380
Query: 448 NNAGGARADET-------------------RDPERTPMQWDSTKHAGFSTARKTWLPVNP 488
+ R E RD RTPMQW +AGF+T W+ VN
Sbjct: 381 RDVSALRLYELERAKGRTHEEAMTIIWKTGRDNSRTPMQWSGASNAGFTTG-TPWIKVNE 439
Query: 489 NYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTM-IYGAVSTHILNGEWVLGLSRSMPGND 547
NY +NVEA+++ S + YR++ QLR+ + + +YG + N + +R++ G D
Sbjct: 440 NYRTINVEAERRDPNSVWSFYRQMIQLRKANELFVYGTYDLLLENHPSIYAYTRTL-GRD 498
Query: 548 TYIVLINFN 556
+V++N +
Sbjct: 499 RALVVVNLS 507
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 186/422 (44%), Gaps = 56/422 (13%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY YY WK+ K + + PNN+ S F GSAW DE +YLH F+ +QPDLN+ + K+
Sbjct: 121 PYRGYYFWKDAK---EGQAPNNYPSFFGGSAWQKDEKTNQYYLHYFAKQQPDLNWDNPKV 177
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
++ + A+LRFWLDKG+ G R D + + DF + + K + Y T P
Sbjct: 178 RQDLYAMLRFWLDKGVSGLRFDTVATYSKIPDFPNLTQQQLKNFAAEY--------TKGP 229
Query: 129 ELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLV-L 187
++ + + V + I V ++ ++K+F R + F F L+ L
Sbjct: 230 NIHRYVNEMNKEVLSHYDIATAGEIFGVP----LDQSIKFFD-RRRDELNIAFTFDLIRL 284
Query: 188 DPDKGERALVLILNHYMKVKSKNQFKDNLP-AEGTSNW---VYDNHDNPRVTNRLGKEL- 242
D D +R K+ Q DN+ G W DNHDNPR + G +
Sbjct: 285 DRDSDQRW----RRKDWKLSQFRQIIDNVDRTAGEYGWNAFFLDNHDNPRAVSHFGDDRP 340
Query: 243 ------ADAYLMISLLMPGVGVTYYGDEIGMEG-PLVRNDERRDPN---------NAGGA 286
A A ++L Y G E+GM P DE D G
Sbjct: 341 QWREPSAKALATLTLTQRATPFIYQGSELGMTNYPFKAIDEFDDIEVKGFWHDYVETGKV 400
Query: 287 RADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWST 338
+ADE +RD RTP QWD +K+AGF T+ K W VNPNY +N +Q S
Sbjct: 401 KADEFLQNVRLTSRDNSRTPFQWDGSKNAGF-TSGKPWFKVNPNYQEINAVSQVTQPDSV 459
Query: 339 YKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRAAN----MLLTEMKRERAKFEAY 393
+ YR+L ++R + YG + + V +R+ +++ K + +++
Sbjct: 460 FNYYRQLIKIRHDIPALTYGTYTDLDPANDSVYAYTRSLGAEKYLVVVNFKEQMMRYKLP 519
Query: 394 DN 395
DN
Sbjct: 520 DN 521
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 86/188 (45%), Gaps = 28/188 (14%)
Query: 394 DNHDNPRVTNRLGKEL-------ADAYLMISLLMPGVGVTYYGDEIGMEG-PLVRNDERR 445
DNHDNPR + G + A A ++L Y G E+GM P DE
Sbjct: 324 DNHDNPRAVSHFGDDRPQWREPSAKALATLTLTQRATPFIYQGSELGMTNYPFKAIDEFD 383
Query: 446 DPN---------NAGGARADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNP 488
D G +ADE +RD RTP QWD +K+AGF T+ K W VNP
Sbjct: 384 DIEVKGFWHDYVETGKVKADEFLQNVRLTSRDNSRTPFQWDGSKNAGF-TSGKPWFKVNP 442
Query: 489 NYYYLNVEAQKKADWSTYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRSMPGND 547
NY +N +Q S + YR+L ++R + YG + + V +RS+ G +
Sbjct: 443 NYQEINAVSQVTQPDSVFNYYRQLIKIRHDIPALTYGTYTDLDPANDSVYAYTRSL-GAE 501
Query: 548 TYIVLINF 555
Y+V++NF
Sbjct: 502 KYLVVVNF 509
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 168/381 (44%), Gaps = 74/381 (19%)
Query: 12 EYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEA 71
+YY+W + PN+ S+F GSAW YD+ +YLH FS KQPDLN+ + L++
Sbjct: 124 DYYIW--------CDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQK 175
Query: 72 MEAVLRFWLDKGIDGWRIDAL--------KHMFEAGDFKDEKYKPGKEGSMNYDDLIHDK 123
+ ++ FW+DKGI G+R+D + +H+ G K S DL+
Sbjct: 176 IYDMMNFWIDKGIGGFRMDVIDMIGKIPAQHIVSNGPKLHAYLKEMNAASFGQHDLLTVG 235
Query: 124 TTDLPELYEILVKWRA---LVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYP 180
T W A + +Y H ++ F++ H P
Sbjct: 236 QT-----------WGATPEIAKQYSNPVNHELSMV-------------FQFEHIGLQHKP 271
Query: 181 FNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRV------ 234
+ + AL I N + Q G ++ ++NHD PRV
Sbjct: 272 EAPKWDYVKELNVPALKTIFNKWQTELELGQ--------GWNSLFWNNHDLPRVLSIWGN 323
Query: 235 TNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEG-PLVRNDERRDPNNAGGARADET-- 291
T + ++ A A ++ LM G Y G+EIGM P +E D + A+ T
Sbjct: 324 TGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLNELDDIESLNYAKEAFTNG 383
Query: 292 --------------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWS 337
RD RTPMQWD++++AGFSTA KTWLPVNPNY +NV+A K S
Sbjct: 384 KSMETIMDSIRMIGRDNARTPMQWDASQNAGFSTADKTWLPVNPNYKDINVQAALKNSNS 443
Query: 338 TYKLYRKLSQLRRTDTMIYGA 358
+ Y++L QLR+ + + A
Sbjct: 444 IFYTYQQLIQLRKENDWLVDA 464
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 24/197 (12%)
Query: 393 YDNHDNPRV------TNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEG-PLVRNDERR 445
++NHD PRV T + ++ A A ++ LM G Y G+EIGM P +E
Sbjct: 309 WNNHDLPRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLNELD 368
Query: 446 DPNNAGGARADET----------------RDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
D + A+ T RD RTPMQWD++++AGFSTA KTWLPVNPN
Sbjct: 369 DIESLNYAKEAFTNGKSMETIMDSIRMIGRDNARTPMQWDASQNAGFSTADKTWLPVNPN 428
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHILNGEWVLGLSRSMPGNDTY 549
Y +NV+A K S + Y++L QLR+ + + A + + V R + + Y
Sbjct: 429 YKDINVQAALKNSNSIFYTYQQLIQLRKENDWLVDADFELLPTADKVFAYLRKV-REERY 487
Query: 550 IVLINFNSIIEEVDLSV 566
++++N + E +++ V
Sbjct: 488 LIVVNVSDQEEVLEIDV 504
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 168/381 (44%), Gaps = 74/381 (19%)
Query: 12 EYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEA 71
+YY+W + PN+ S+F GSAW YD+ +YLH FS KQPDLN+ + L++
Sbjct: 124 DYYIW--------CDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQK 175
Query: 72 MEAVLRFWLDKGIDGWRIDAL--------KHMFEAGDFKDEKYKPGKEGSMNYDDLIHDK 123
+ ++ FW+DKGI G+R+D + +H+ G K S DL+
Sbjct: 176 IYDMMNFWIDKGIGGFRMDVIDMIGKIPAQHIVSNGPKLHAYLKEMNAASFGQHDLLTVG 235
Query: 124 TTDLPELYEILVKWRA---LVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYP 180
T W A + +Y H ++ F++ H P
Sbjct: 236 ET-----------WGATPEIAKQYSNPVNHELSMV-------------FQFEHIGLQHKP 271
Query: 181 FNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRV------ 234
+ + AL I N + Q G ++ ++NHD PRV
Sbjct: 272 EAPKWDYVKELNVPALKTIFNKWQTELELGQ--------GWNSLFWNNHDLPRVLSIWGN 323
Query: 235 TNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEG-PLVRNDERRDPNNAGGARADET-- 291
T + ++ A A ++ LM G Y G+EIGM P +E D + A+ T
Sbjct: 324 TGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLNELDDIESLNYAKEAFTNG 383
Query: 292 --------------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWS 337
RD RTPMQWD++++AGFSTA KTWLPVNPNY +NV+A K S
Sbjct: 384 KSMETIMDSIRMIGRDNARTPMQWDASQNAGFSTADKTWLPVNPNYKDINVQAALKNSNS 443
Query: 338 TYKLYRKLSQLRRTDTMIYGA 358
+ Y++L QLR+ + + A
Sbjct: 444 IFYTYQQLIQLRKENDWLVDA 464
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 24/197 (12%)
Query: 393 YDNHDNPRV------TNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEG-PLVRNDERR 445
++NHD PRV T + ++ A A ++ LM G Y G+EIGM P +E
Sbjct: 309 WNNHDLPRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLNELD 368
Query: 446 DPNNAGGARADET----------------RDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
D + A+ T RD RTPMQWD++++AGFSTA KTWLPVNPN
Sbjct: 369 DIESLNYAKEAFTNGKSMETIMDSIRMIGRDNARTPMQWDASQNAGFSTADKTWLPVNPN 428
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHILNGEWVLGLSRSMPGNDTY 549
Y +NV+A K S + Y++L QLR+ + + A + + V R + + Y
Sbjct: 429 YKDINVQAALKNSNSIFYTYQQLIQLRKENDWLVDADFELLPTADKVFAYLRKV-REERY 487
Query: 550 IVLINFNSIIEEVDLSV 566
++++N + E +++ V
Sbjct: 488 LIVVNVSDQEEVLEIDV 504
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 176/380 (46%), Gaps = 50/380 (13%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK +PPNN+ S F GSAW D +YLH F+ +QPDLN+ + K+
Sbjct: 135 PYRDYYFWRDGK---DNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKV 191
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R D + + F + + K + Y T P
Sbjct: 192 REDLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQY--------TMGP 243
Query: 129 ELYEILVKW-RALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLV- 186
++ + + R ++ Y T I V ++ + ++F R + F F L+
Sbjct: 244 NIHRYIQEMNRKVLSRYDVATA-GEIFGVP----LDRSSQFFD-RRRHELNMAFMFDLIR 297
Query: 187 LDPDKGE--RALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGKEL-- 242
LD D E R L+ + ++ SK + G + + DNHDNPR + G +
Sbjct: 298 LDRDSNERWRHKSWSLSQFRQIISKMDV--TVGKYGWNTFFLDNHDNPRAVSHFGDDRPQ 355
Query: 243 -----ADAYLMISLLMPGVGVTYYGDEIGMEG-PLVRNDERRDPN---------NAGGAR 287
A A I+L Y G E+GM P + +E D +G
Sbjct: 356 WREASAKALATITLTQRATPFIYQGSELGMTNYPFRQLNEFDDIEVKGFWQDYVQSGKVT 415
Query: 288 ADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTY 339
A E +RD RTP QW+ T +AGF T K W +NPNY +N E ++ + S
Sbjct: 416 ATEFLDNVRLTSRDNSRTPFQWNDTLNAGF-TRGKPWFHINPNYVEINAEREETREDSVL 474
Query: 340 KLYRKLSQLR-RTDTMIYGA 358
Y+K+ QLR ++YGA
Sbjct: 475 NYYKKMIQLRHHIPALVYGA 494
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 91/206 (44%), Gaps = 39/206 (18%)
Query: 394 DNHDNPRVTNRLGKEL-------ADAYLMISLLMPGVGVTYYGDEIGMEG-PLVRNDERR 445
DNHDNPR + G + A A I+L Y G E+GM P + +E
Sbjct: 338 DNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNYPFRQLNEFD 397
Query: 446 DPN---------NAGGARADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNP 488
D +G A E +RD RTP QW+ T +AGF T K W +NP
Sbjct: 398 DIEVKGFWQDYVQSGKVTATEFLDNVRLTSRDNSRTPFQWNDTLNAGF-TRGKPWFHINP 456
Query: 489 NYYYLNVEAQKKADWSTYKLYRKLSQLR-RTDTMIYGAVSTHILNGEWVLGLSRSMPGND 547
NY +N E ++ + S Y+K+ QLR ++YGA V +R++ GN+
Sbjct: 457 NYVEINAEREETREDSVLNYYKKMIQLRHHIPALVYGAYQDLNPQDNTVYAYTRTL-GNE 515
Query: 548 TYIVLINF-----------NSIIEEV 562
Y+V++NF N IEEV
Sbjct: 516 RYLVVVNFKEYPVRYTLPANDAIEEV 541
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 162/370 (43%), Gaps = 50/370 (13%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK ++ PNN+ S F GSAW D +YLH F +QPDLN+ + KL
Sbjct: 149 PYRDYYFWRDGKDGHE---PNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKL 205
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R D + + F D + K + Y T P
Sbjct: 206 REELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAY--------TQGP 257
Query: 129 ELYEILVKWRALV-DEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVL 187
L+ L + V D Y T E + N + F + R F F L+
Sbjct: 258 NLHRYLQEMHEKVFDHYDAVTAG------EIFGAPLNQVPLFIDSRRKELDMAFTFDLIC 311
Query: 188 DPDKGER--ALVLILNHYMKVKSKNQFKDNLPAE-GTSNWVYDNHDNPRVTNRLGKE--- 241
+R + L + + K D + E G + + NHDNPR + G +
Sbjct: 312 YDRALDRWHTIPRTLADFRQTIDK---VDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQ 368
Query: 242 ----LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER----------RDPNNAGGAR 287
A A ++L G + GDE+GM + + +D G A
Sbjct: 369 WREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKAT 428
Query: 288 ADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTY 339
A+E +RD RTP QWD + +AGF+T K WL VNPNY +N + S Y
Sbjct: 429 AEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPNYTEINAAREIGDPKSVY 487
Query: 340 KLYRKLSQLR 349
YR L +R
Sbjct: 488 SFYRNLISIR 497
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 28/189 (14%)
Query: 395 NHDNPRVTNRLGKEL-------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER--- 444
NHDNPR + G + A A ++L G + GDE+GM + +
Sbjct: 352 NHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDD 411
Query: 445 -------RDPNNAGGARADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
+D G A A+E +RD RTP QWD + +AGF+T K WL VNPN
Sbjct: 412 IEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPN 470
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRSMPGNDT 548
Y +N + S Y YR L +R T + G+ + V +RS G +T
Sbjct: 471 YTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDG-ET 529
Query: 549 YIVLINFNS 557
Y+V++NF +
Sbjct: 530 YLVVVNFKA 538
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 162/371 (43%), Gaps = 52/371 (14%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK ++ PNN+ S F GSAW D +YLH F +QPDLN+ + KL
Sbjct: 121 PYRDYYFWRDGKDGHE---PNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKL 177
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R D + + F D + K + Y T P
Sbjct: 178 REELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAY--------TQGP 229
Query: 129 ELYEILVKWRALV-DEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVL 187
L+ L + V D Y T E + N + F + R F F L+
Sbjct: 230 NLHRYLQEMHEKVFDHYDAVTAG------EIFGAPLNQVPLFIDSRRKELDMAFTFDLI- 282
Query: 188 DPDKGERALVLILNHYMKVKSKNQFKDNLPA----EGTSNWVYDNHDNPRVTNRLGKEL- 242
+ +RAL + Q D + A G + + NHDNPR + G +
Sbjct: 283 ---RYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRP 339
Query: 243 ------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER----------RDPNNAGGA 286
A A ++L G + GDE+GM + + +D G A
Sbjct: 340 QWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKA 399
Query: 287 RADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWST 338
A+E +RD RTP QWD + +AGF+T K WL VNPNY +N + S
Sbjct: 400 TAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPNYTEINAAREIGDPKSV 458
Query: 339 YKLYRKLSQLR 349
Y YR L +R
Sbjct: 459 YSFYRNLISIR 469
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 28/189 (14%)
Query: 395 NHDNPRVTNRLGKEL-------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER--- 444
NHDNPR + G + A A ++L G + GDE+GM + +
Sbjct: 324 NHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDD 383
Query: 445 -------RDPNNAGGARADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
+D G A A+E +RD RTP QWD + +AGF+T K WL VNPN
Sbjct: 384 IEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPN 442
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRSMPGNDT 548
Y +N + S Y YR L +R T + G+ + V +RS G +T
Sbjct: 443 YTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDG-ET 501
Query: 549 YIVLINFNS 557
Y+V++NF +
Sbjct: 502 YLVVVNFKA 510
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 162/370 (43%), Gaps = 50/370 (13%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK ++ PNN+ S F GSAW D +YLH F +QPDLN+ + KL
Sbjct: 122 PYRDYYFWRDGKDGHE---PNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKL 178
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R D + + F D + K + Y T P
Sbjct: 179 REELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAY--------TQGP 230
Query: 129 ELYEILVKWRALV-DEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVL 187
L+ L + V D Y T E + N + F + R F F L+
Sbjct: 231 NLHRYLQEMHEKVFDHYDAVTAG------EIFGAPLNQVPLFIDSRRKELDMAFTFDLIC 284
Query: 188 DPDKGER--ALVLILNHYMKVKSKNQFKDNLPAE-GTSNWVYDNHDNPRVTNRLGKE--- 241
+R + L + + K D + E G + + NHDNPR + G +
Sbjct: 285 YDRALDRWHTIPRTLADFRQTIDK---VDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQ 341
Query: 242 ----LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER----------RDPNNAGGAR 287
A A ++L G + GDE+GM + + +D G A
Sbjct: 342 WREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKAT 401
Query: 288 ADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTY 339
A+E +RD RTP QWD + +AGF+T K WL VNPNY +N + S Y
Sbjct: 402 AEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPNYTEINAAREIGDPKSVY 460
Query: 340 KLYRKLSQLR 349
YR L +R
Sbjct: 461 SFYRNLISIR 470
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 28/189 (14%)
Query: 395 NHDNPRVTNRLGKEL-------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER--- 444
NHDNPR + G + A A ++L G + GDE+GM + +
Sbjct: 325 NHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDD 384
Query: 445 -------RDPNNAGGARADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
+D G A A+E +RD RTP QWD + +AGF+T K WL VNPN
Sbjct: 385 IEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPN 443
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRSMPGNDT 548
Y +N + S Y YR L +R T + G+ + V +RS G +T
Sbjct: 444 YTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDG-ET 502
Query: 549 YIVLINFNS 557
Y+V++NF +
Sbjct: 503 YLVVVNFKA 511
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 162/371 (43%), Gaps = 52/371 (14%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK ++ PNN+ S F GSAW D +YLH F +QPDLN+ + KL
Sbjct: 122 PYRDYYFWRDGKDGHE---PNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKL 178
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R D + + F D + K + Y T P
Sbjct: 179 REELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAY--------TQGP 230
Query: 129 ELYEILVKWRALV-DEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVL 187
L+ L + V D Y T E + N + F + R F F L+
Sbjct: 231 NLHRYLQEMHEKVFDHYDAVTAG------EIFGAPLNQVPLFIDSRRKELDMAFTFDLI- 283
Query: 188 DPDKGERALVLILNHYMKVKSKNQFKDNLPA----EGTSNWVYDNHDNPRVTNRLGKEL- 242
+ +RAL + Q D + A G + + NHDNPR + G +
Sbjct: 284 ---RYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRP 340
Query: 243 ------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER----------RDPNNAGGA 286
A A ++L G + GDE+GM + + +D G A
Sbjct: 341 QWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKA 400
Query: 287 RADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWST 338
A+E +RD RTP QWD + +AGF+T K WL VNPNY +N + S
Sbjct: 401 TAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPNYTEINAAREIGDPKSV 459
Query: 339 YKLYRKLSQLR 349
Y YR L +R
Sbjct: 460 YSFYRNLISIR 470
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 28/189 (14%)
Query: 395 NHDNPRVTNRLGKEL-------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER--- 444
NHDNPR + G + A A ++L G + GDE+GM + +
Sbjct: 325 NHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDD 384
Query: 445 -------RDPNNAGGARADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
+D G A A+E +RD RTP QWD + +AGF+T K WL VNPN
Sbjct: 385 IEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPN 443
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRSMPGNDT 548
Y +N + S Y YR L +R T + G+ + V +RS G +T
Sbjct: 444 YTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDG-ET 502
Query: 549 YIVLINFNS 557
Y+V++NF +
Sbjct: 503 YLVVVNFKA 511
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 161/370 (43%), Gaps = 50/370 (13%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK ++ PNN+ S F GSAW D +YLH F +QPDLN+ + KL
Sbjct: 121 PYRDYYFWRDGKDGHE---PNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKL 177
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R D + + F D + K + Y T P
Sbjct: 178 REELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAY--------TQGP 229
Query: 129 ELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLD 188
L+ L + V ++ +I N + F + R F F L+
Sbjct: 230 NLHRYLQEMHEKVFDHYDAVTAGQIFGAPL-----NQVPLFIDSRRKELDMAFTFDLI-- 282
Query: 189 PDKGERALVLILNHYMKVKSKNQFKDNLPA----EGTSNWVYDNHDNPRVTNRLGKEL-- 242
+ +RAL + Q D + A G + + NHDNPR + G +
Sbjct: 283 --RYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQ 340
Query: 243 -----ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER----------RDPNNAGGAR 287
A A ++L G + GDE+GM + + +D G A
Sbjct: 341 WREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKAT 400
Query: 288 ADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTY 339
A+E +RD RTP QWD + +AGF+T K WL VNPNY +N + S Y
Sbjct: 401 AEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPNYTEINAAREIGDPKSVY 459
Query: 340 KLYRKLSQLR 349
YR L +R
Sbjct: 460 SFYRNLISIR 469
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 28/189 (14%)
Query: 395 NHDNPRVTNRLGKEL-------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER--- 444
NHDNPR + G + A A ++L G + GDE+GM + +
Sbjct: 324 NHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDD 383
Query: 445 -------RDPNNAGGARADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
+D G A A+E +RD RTP QWD + +AGF+T K WL VNPN
Sbjct: 384 IEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPN 442
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRSMPGNDT 548
Y +N + S Y YR L +R T + G+ + V +RS G +T
Sbjct: 443 YTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDG-ET 501
Query: 549 YIVLINFNS 557
Y+V++NF +
Sbjct: 502 YLVVVNFKA 510
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 161/371 (43%), Gaps = 52/371 (14%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK ++ PNN+ S F GSAW D +YLH +QPDLN+ + KL
Sbjct: 122 PYRDYYFWRDGKDGHE---PNNYPSFFGGSAWEKDPVTGQYYLHYLGRQQPDLNWDTPKL 178
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R D + + F D + K + Y T P
Sbjct: 179 REELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAY--------TQGP 230
Query: 129 ELYEILVKWRALV-DEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVL 187
L+ L + V D Y T E + N + F + R F F L+
Sbjct: 231 NLHRYLQEMHEKVFDHYDAVTAG------EIFGAPLNQVPLFIDSRRKELDMAFTFDLI- 283
Query: 188 DPDKGERALVLILNHYMKVKSKNQFKDNLPA----EGTSNWVYDNHDNPRVTNRLGKE-- 241
+ +RAL + Q D + A G + + NHDNPR + G +
Sbjct: 284 ---RYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRP 340
Query: 242 -----LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER----------RDPNNAGGA 286
A A ++L G + GDE+GM + + +D G A
Sbjct: 341 QWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKA 400
Query: 287 RADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWST 338
A+E +RD RTP QWD + +AGF+T K WL VNPNY +N + S
Sbjct: 401 TAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPNYTEINAAREIGDPKSV 459
Query: 339 YKLYRKLSQLR 349
Y YR L +R
Sbjct: 460 YSFYRNLISIR 470
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 28/189 (14%)
Query: 395 NHDNPRVTNRLGKEL-------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER--- 444
NHDNPR + G + A A ++L G + GDE+GM + +
Sbjct: 325 NHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDD 384
Query: 445 -------RDPNNAGGARADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
+D G A A+E +RD RTP QWD + +AGF+T K WL VNPN
Sbjct: 385 IEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPN 443
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRSMPGNDT 548
Y +N + S Y YR L +R T + G+ + V +RS G +T
Sbjct: 444 YTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDG-ET 502
Query: 549 YIVLINFNS 557
Y+V++NF +
Sbjct: 503 YLVVVNFKA 511
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 161/371 (43%), Gaps = 52/371 (14%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK ++ PNN+ S F GSAW D +YLH F +QPDLN+ + KL
Sbjct: 121 PYRDYYFWRDGKDGHE---PNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKL 177
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R + + F D + K + Y T P
Sbjct: 178 REELYAMLRFWLDKGVSGMRFATVATYSKTPGFPDLTPEQMKNFAEAY--------TQGP 229
Query: 129 ELYEILVKWRALV-DEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVL 187
L+ L + V D Y T E + N + F + R F F L+
Sbjct: 230 NLHRYLQEMHEKVFDHYDAVTAG------EIFGAPLNQVPLFIDSRRKELDMAFTFDLI- 282
Query: 188 DPDKGERALVLILNHYMKVKSKNQFKDNLPA----EGTSNWVYDNHDNPRVTNRLGKEL- 242
+ +RAL + Q D + A G + + NHDNPR + G +
Sbjct: 283 ---RYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRP 339
Query: 243 ------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER----------RDPNNAGGA 286
A A ++L G + GDE+GM + + +D G A
Sbjct: 340 QWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETGKA 399
Query: 287 RADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWST 338
A+E +RD RTP QWD + +AGF+T K WL VNPNY +N + S
Sbjct: 400 TAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPNYTEINAAREIGDPKSV 458
Query: 339 YKLYRKLSQLR 349
Y YR L +R
Sbjct: 459 YSFYRNLISIR 469
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 28/189 (14%)
Query: 395 NHDNPRVTNRLGKEL-------ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER--- 444
NHDNPR + G + A A ++L G + GDE+GM + +
Sbjct: 324 NHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDD 383
Query: 445 -------RDPNNAGGARADE--------TRDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
+D G A A+E +RD RTP QWD + +AGF+T K WL VNPN
Sbjct: 384 IEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPN 442
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRR-TDTMIYGAVSTHILNGEWVLGLSRSMPGNDT 548
Y +N + S Y YR L +R T + G+ + V +RS G +T
Sbjct: 443 YTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQDG-ET 501
Query: 549 YIVLINFNS 557
Y+V++NF +
Sbjct: 502 YLVVVNFKA 510
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 193/417 (46%), Gaps = 62/417 (14%)
Query: 10 YDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQ 69
Y +YY+W++ V++ EP N+ S FSGSAW YDE +YLH F+ +QPDLN+++ +L+
Sbjct: 123 YRDYYIWRDP--VDEHEP-NDLKSAFSGSAWKYDERSGQYYLHFFADQQPDLNWQNTELR 179
Query: 70 EAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPE 129
+ + ++ FWLDKGI G+R+D ++ + G D+ + Y ++ T +
Sbjct: 180 QKIYNMMNFWLDKGIGGFRMDVIELI---GKDPDKNIRENGPMLHPYLQEMNKATFGKRD 236
Query: 130 LYEILVKWRA---LVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLV 186
+ + W A + +EY H ++ F++ + P +
Sbjct: 237 VMTVGETWNATPKIAEEYSDPDRHELSMV-------------FQFENQSLDQQPGKEKWD 283
Query: 187 LDP-DKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGK----- 240
L P D GE VL+ K ++K F ++ ++NHD PRV +R G
Sbjct: 284 LKPLDLGELKKVLV-----KWQTKIDFD-----HAWNSLFWENHDIPRVISRWGNDQEYR 333
Query: 241 -ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRN-DERRDPNN--------AGGARADE 290
+ A + +I +M G + G+EIGM V+N DE D + A G +E
Sbjct: 334 VQCAKMFAIILHMMHGTPYIFNGEEIGMTNCPVKNIDEVEDIESINMYNERLAEGYDEEE 393
Query: 291 T--------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLY 342
RD R PMQW+ K+AGFS WL VNPNY +NVE S + Y
Sbjct: 394 LIHAINVKGRDNARRPMQWNDEKNAGFSEV-DPWLSVNPNYKDINVENALADPNSIFYTY 452
Query: 343 RKLSQLRRTDTMIYGAVSTHILNGE-WVLGLSRAAN----MLLTEMKRERAKFEAYD 394
+KL +LR + ++ + + N + VL R N +++ + E F + D
Sbjct: 453 QKLIKLRHENPIVVDGDFSLVSNTQDAVLAYYRILNDKKWLVVANLSNEEQNFVSND 509
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 393 YDNHDNPRVTNRLGK------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRN-DERR 445
++NHD PRV +R G + A + +I +M G + G+EIGM V+N DE
Sbjct: 314 WENHDIPRVISRWGNDQEYRVQCAKMFAIILHMMHGTPYIFNGEEIGMTNCPVKNIDEVE 373
Query: 446 DPNN--------AGGARADET--------RDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
D + A G +E RD R PMQW+ K+AGFS WL VNPN
Sbjct: 374 DIESINMYNERLAEGYDEEELIHAINVKGRDNARRPMQWNDEKNAGFSEV-DPWLSVNPN 432
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI 522
Y +NVE S + Y+KL +LR + ++
Sbjct: 433 YKDINVENALADPNSIFYTYQKLIKLRHENPIV 465
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 176/410 (42%), Gaps = 88/410 (21%)
Query: 9 PYDEYYVWKEGKGVN---KTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRS 65
P +++ W+ KG + K PPNNW S F GSAWT+DE + FYL F + QPDLN+ +
Sbjct: 130 PKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRLFCSTQPDLNWEN 189
Query: 66 KKLQEAM-EAVLRFWLDKGIDGWRIDALKHMFEAGDF-------KDEKYKPGKEGSMN-- 115
+ ++A+ E+ + +WLD G+DG+RID + K+ ++ ++N
Sbjct: 190 EDCRKAIYESAVGYWLDHGVDGFRIDVGSLYSKVVGLPDAPVVDKNSTWQSSDPYTLNGP 249
Query: 116 --------YDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVE----SYTDIE 163
+ I ++ D E+ + A + + T +R + E S+TD+
Sbjct: 250 RIHEFHQEMNQFIRNRVKDGREIMTVGAMQHASDETKRLYTSASRHELSELFNFSHTDV- 308
Query: 164 NTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSN 223
T F+YN P F+L K + + L Y+ GT
Sbjct: 309 GTSPLFRYNLVP-------FEL-----KDWKIALAELFRYIN--------------GTDC 342
Query: 224 W--VY-DNHDNPRVTNRLGKE-----LADAYLMISLL--MPGVGVTYYGDEIGM----EG 269
W +Y +NHD PR R G + + L+ LL + G Y G E+G
Sbjct: 343 WSTIYLENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINFKNW 402
Query: 270 PLVRNDERRDPNNAGGARADE-----------------TRDPERTPMQWDSTK-HAGFS- 310
P+ + ++ NN + + +RD RTPMQW + +AGFS
Sbjct: 403 PVEKYEDVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSG 462
Query: 311 TARKTWLPVNPNYYY-LNVEAQKKADWSTYKLYRKLSQLRRT--DTMIYG 357
+ K W +N ++ +NVE + K S +++ + R+ D +YG
Sbjct: 463 PSAKPWFYLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYG 512
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 35/198 (17%)
Query: 394 DNHDNPRVTNRLGKE-----LADAYLMISLL--MPGVGVTYYGDEIGM----EGPLVRND 442
+NHD PR R G + + L+ LL + G Y G E+G P+ + +
Sbjct: 349 ENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINFKNWPVEKYE 408
Query: 443 ERRDPNNAGGARADE-----------------TRDPERTPMQWDSTK-HAGFS-TARKTW 483
+ NN + + +RD RTPMQW + +AGFS + K W
Sbjct: 409 DVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSGPSAKPW 468
Query: 484 LPVNPNYYY-LNVEAQKKADWSTYKLYRKLSQLRRT--DTMIYGAVSTHI-LNGEWVLGL 539
+N ++ +NVE + K S +++ + R+ D +YG I L+ + +
Sbjct: 469 FYLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSF 528
Query: 540 SRSMPGNDTYIVLINFNS 557
++ N T +NF+S
Sbjct: 529 TKKY-NNKTLFAALNFSS 545
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 176/410 (42%), Gaps = 88/410 (21%)
Query: 9 PYDEYYVWKEGKGVN---KTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRS 65
P +++ W+ KG + K PPNNW S F GSAWT+DE + FYL F + QPDLN+ +
Sbjct: 130 PKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRLFCSTQPDLNWEN 189
Query: 66 KKLQEAM-EAVLRFWLDKGIDGWRIDALKHMFEAGDF-------KDEKYKPGKEGSMN-- 115
+ ++A+ E+ + +WLD G+DG+RID + K+ ++ ++N
Sbjct: 190 EDCRKAIYESAVGYWLDHGVDGFRIDVGSLYSKVVGLPDAPVVDKNSTWQSSDPYTLNGP 249
Query: 116 --------YDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVE----SYTDIE 163
+ I ++ D E+ + A + + T +R + E S+TD+
Sbjct: 250 RIHEFHQEMNQFIRNRVKDGREIMTVGEMQHASDETKRLYTSASRHELSELFNFSHTDV- 308
Query: 164 NTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSN 223
T F+YN P F+L K + + L Y+ GT
Sbjct: 309 GTSPLFRYNLVP-------FEL-----KDWKIALAELFRYIN--------------GTDC 342
Query: 224 W--VY-DNHDNPRVTNRLGKE-----LADAYLMISLL--MPGVGVTYYGDEIGM----EG 269
W +Y +NHD PR R G + + L+ LL + G Y G E+G
Sbjct: 343 WSTIYLENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINFKNW 402
Query: 270 PLVRNDERRDPNNAGGARADE-----------------TRDPERTPMQWDSTK-HAGFS- 310
P+ + ++ NN + + +RD RTPMQW + +AGFS
Sbjct: 403 PVEKYEDVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSG 462
Query: 311 TARKTWLPVNPNYYY-LNVEAQKKADWSTYKLYRKLSQLRRT--DTMIYG 357
+ K W +N ++ +NVE + K S +++ + R+ D +YG
Sbjct: 463 PSAKPWFYLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYG 512
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 35/198 (17%)
Query: 394 DNHDNPRVTNRLGKE-----LADAYLMISLL--MPGVGVTYYGDEIGM----EGPLVRND 442
+NHD PR R G + + L+ LL + G Y G E+G P+ + +
Sbjct: 349 ENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINFKNWPVEKYE 408
Query: 443 ERRDPNNAGGARADE-----------------TRDPERTPMQWDSTK-HAGFS-TARKTW 483
+ NN + + +RD RTPMQW + +AGFS + K W
Sbjct: 409 DVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSGPSAKPW 468
Query: 484 LPVNPNYYY-LNVEAQKKADWSTYKLYRKLSQLRRT--DTMIYGAVSTHI-LNGEWVLGL 539
+N ++ +NVE + K S +++ + R+ D +YG I L+ + +
Sbjct: 469 FYLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSF 528
Query: 540 SRSMPGNDTYIVLINFNS 557
++ N T +NF+S
Sbjct: 529 TKKY-NNKTLFAALNFSS 545
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 144/364 (39%), Gaps = 78/364 (21%)
Query: 10 YDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQ 69
Y +YYVW G + E + G W Y M+Y + F + PDLN+ + ++Q
Sbjct: 125 YRDYYVWA-GPDTDTKE-----TKLDGGRVWHYSPT-GMYYGY-FWSGMPDLNYNNPEVQ 176
Query: 70 EAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPE 129
E + + ++WL +G+DG+R+D H+F + DK E
Sbjct: 177 EKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQY--------------------DKNFTWWE 216
Query: 130 LYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMK-YFKYNGRPAAHYPFNFQLVLD 188
K+R ++E K + +V DI T+ YFKY FNF+L
Sbjct: 217 ------KFRQEIEEVKP------VYLVGEVWDISETVAPYFKYGFDST----FNFKLAEA 260
Query: 189 PDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWV----YDNHDNPRVTNRLGKELAD 244
+A K+K+ + G N++ NHD R+ ++LG++
Sbjct: 261 VIATAKAGFPFG---FNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNK 317
Query: 245 AYLM--ISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWD 302
A + I L +PG YYG+EIGM G + P+ R P QW
Sbjct: 318 ARVAASIYLTLPGNPFIYYGEEIGMRG--------QGPHEV-----------IREPFQW- 357
Query: 303 STKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTH 362
+ G W P N + +VE ++K S YR+L R + + Y
Sbjct: 358 ---YNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTG-KIE 413
Query: 363 ILNG 366
I+NG
Sbjct: 414 IING 417
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 25/158 (15%)
Query: 395 NHDNPRVTNRLGKELADAYLM--ISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 452
NHD R+ ++LG++ A + I L +PG YYG+EIGM G + P+
Sbjct: 301 NHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRG--------QGPHEV-- 350
Query: 453 ARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKL 512
R P QW + G W P N + +VE ++K S YR+L
Sbjct: 351 ---------IREPFQW----YNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRL 397
Query: 513 SQLRRTDTMIYGAVSTHILNGEWVLGLSRSMPGNDTYI 550
R + + Y I G V+ R D Y+
Sbjct: 398 IHFRNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYV 435
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 55/226 (24%)
Query: 49 FYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKP 108
FY F PDLN+ + ++ + M+ ++ LD G+DG+R DA KHM +
Sbjct: 145 FYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLLDMGVDGFRFDAAKHM-----------RD 193
Query: 109 GKEGSMNYDDLIHDKTTDLPELY--EILVKWRALVDEYKQKTGHTRILIVESYTDIENTM 166
E ++ + +DL ++ EI + R +VDE H RI D + +
Sbjct: 194 TIEQNVRFWKYF---LSDLKGIFLAEIWAEAR-MVDE------HGRIFGYMLNFDTSHCI 243
Query: 167 KYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVY 226
K A + N ++++ + ERA++ KD LP TS
Sbjct: 244 K--------EAVWKENTRVLI--ESIERAVIA--------------KDYLPVNFTS---- 275
Query: 227 DNHDNPRVTNRLG---KELADAYLMISLLMPGVGVTYYGDEIGMEG 269
NHD R+ + G KE + I +PGV + +YGDE+GM+G
Sbjct: 276 -NHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGMKG 320
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 395 NHDNPRVTNRLG---KELADAYLMISLLMPGVGVTYYGDEIGMEG 436
NHD R+ + G KE + I +PGV + +YGDE+GM+G
Sbjct: 276 NHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGMKG 320
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 118/294 (40%), Gaps = 73/294 (24%)
Query: 70 EAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTD--- 126
+A+ + W+ +G+DG R+DA+KH++ H +T++
Sbjct: 345 QAIADAAKGWIARGVDGLRLDAVKHIY------------------------HSETSEENP 380
Query: 127 --LPELYEILVKWRALVDEYKQKTGHTR--ILIVESYTDIENTMKYFKYNGRPAAHYPFN 182
L YE + + YKQK GHT +I E ++ + Y+K G PA + F+
Sbjct: 381 RFLKMFYEDMNAY------YKQK-GHTDDFYMIGEVLSEYDKVAPYYK--GLPAL-FEFS 430
Query: 183 FQLVLDPDKGERALVLILNHYMKVKSK--NQFKDNLPAEGTSNWVYDNHDNPRVTNRLGK 240
F L+ + + K N D + A S NH+ R +++LGK
Sbjct: 431 FWYRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLS-----NHNEDRTSSKLGK 485
Query: 241 ELADAYLMISLLMPGVG--VTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTP 298
L ++L+ G YYG+E+G+ G DE R+P
Sbjct: 486 SADKCKLAAAVLLTSAGHPYIYYGEELGLYGTKDNGDEYV-----------------RSP 528
Query: 299 MQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKAD-WSTYKLYRKLSQLRRT 351
M W + ++ KT V+ N + A ++AD S +Y L++LR T
Sbjct: 529 MLWGDSYTTNYT--DKTDATVSKN---VKTVADQQADTHSLLNIYFSLTRLRNT 577
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 25/127 (19%)
Query: 395 NHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEGPLVRNDERRDPNNAGG 452
NH+ R +++LGK L ++L+ G YYG+E+G+ G DE
Sbjct: 473 NHNEDRTSSKLGKSADKCKLAAAVLLTSAGHPYIYYGEELGLYGTKDNGDEYV------- 525
Query: 453 ARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKAD-WSTYKLYRK 511
R+PM W + ++ KT V+ N + A ++AD S +Y
Sbjct: 526 ----------RSPMLWGDSYTTNYT--DKTDATVSKN---VKTVADQQADTHSLLNIYFS 570
Query: 512 LSQLRRT 518
L++LR T
Sbjct: 571 LTRLRNT 577
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 114/289 (39%), Gaps = 63/289 (21%)
Query: 70 EAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPE 129
+A+ + W+ +G+DG R+DA+KH++ H +T++ E
Sbjct: 345 QAIADAAKGWIARGVDGLRLDAVKHIY------------------------HSETSE--E 378
Query: 130 LYEILVKWRALVDEYKQKTGHTRIL--IVESYTDIENTMKYFKYNGRPAAHYPFNFQLVL 187
L + + Y ++ GHT I E ++ + Y+K G PA + F+F L
Sbjct: 379 NPRFLKXFYEDXNAYYKQKGHTDDFYXIGEVLSEYDKVAPYYK--GLPAL-FEFSFWYRL 435
Query: 188 DPDKGERALVLILNHYMKVKSK--NQFKDNLPAEGTSNWVYDNHDNPRVTNRLGKELADA 245
+ + + K N D + A SN HD R +++LGK
Sbjct: 436 EWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSN-----HDEDRTSSKLGKSADKC 490
Query: 246 YLMISLLMPGVG--VTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDS 303
L ++L+ G YYG+E+G+ G DE R+P W
Sbjct: 491 KLAAAVLLTSAGHPYIYYGEELGLYGTKDNGDEYV-----------------RSPXLWGD 533
Query: 304 TKHAGFSTARKTWLPVNPNYYYLNVEAQKKAD-WSTYKLYRKLSQLRRT 351
+ ++ KT V+ N + A ++AD S +Y L++LR T
Sbjct: 534 SYTTNYT--DKTDATVSKN---VKTVADQQADTHSLLNIYFSLTRLRNT 577
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 25/127 (19%)
Query: 395 NHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEGPLVRNDERRDPNNAGG 452
NHD R +++LGK L ++L+ G YYG+E+G+ G DE
Sbjct: 473 NHDEDRTSSKLGKSADKCKLAAAVLLTSAGHPYIYYGEELGLYGTKDNGDEYV------- 525
Query: 453 ARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKAD-WSTYKLYRK 511
R+P W + ++ KT V+ N + A ++AD S +Y
Sbjct: 526 ----------RSPXLWGDSYTTNYT--DKTDATVSKN---VKTVADQQADTHSLLNIYFS 570
Query: 512 LSQLRRT 518
L++LR T
Sbjct: 571 LTRLRNT 577
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR+D + A F E + K S+N D
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHA--FWREFRRLVK--SLNPDA 349
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
LI + E++ W + D++ V +Y E+ +++F A
Sbjct: 350 LI------VGEIWHDASGW-LMGDQFDS---------VMNYLFRESVIRFFATGEIHAER 393
Query: 179 YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRL 238
F+ +L RA +L A+G N + D+HD R
Sbjct: 394 --FDAELT-------RARMLYPEQ--------------AAQGLWN-LLDSHDTERFLTSC 429
Query: 239 GKELADAYLMISLLMPGVG--VTYYGDEIGMEG 269
G A L + M +G + YYGDEIGM G
Sbjct: 430 GGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 436
D+HD R G A L + M +G + YYGDEIGM G
Sbjct: 418 DSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR+D + A F E + K S+N D
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHA--FWREFRRLVK--SLNPDA 349
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
LI + E++ W + D++ V +Y E+ +++F A
Sbjct: 350 LI------VGEIWHDASGW-LMGDQFDS---------VMNYLFRESVIRFFATGEIHAER 393
Query: 179 YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRL 238
F+ +L RA +L A+G N + D+HD R
Sbjct: 394 --FDAELT-------RARMLYPEQ--------------AAQGLWN-LLDSHDTERFLTSC 429
Query: 239 GKELADAYLMISLLMPGVG--VTYYGDEIGMEG 269
G A L + M +G + YYGDEIGM G
Sbjct: 430 GGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 436
D+HD R G A L + M +G + YYGDEIGM G
Sbjct: 418 DSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR+D + A F E + K S+N D
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHA--FWREFRRLVK--SLNPDA 349
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
LI + E++ W + D++ V +Y E+ +++F A
Sbjct: 350 LI------VGEIWHDASGW-LMGDQFDS---------VMNYLFRESVIRFFATGEIHAER 393
Query: 179 YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRL 238
F+ +L RA +L A+G N + D+HD R
Sbjct: 394 --FDAELT-------RARMLYPEQ--------------AAQGLWN-LLDSHDTERFLTSC 429
Query: 239 GKELADAYLMISLLMPGVG--VTYYGDEIGMEG 269
G A L + M +G + YYGDEIGM G
Sbjct: 430 GGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 436
D+HD R G A L + M +G + YYGDEIGM G
Sbjct: 418 DSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR+D + A F E + K S+N D
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHA--FWREFRRLVK--SLNPDA 349
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
LI + E++ W + D++ V +Y E+ +++F A
Sbjct: 350 LI------VGEIWHDASGW-LMGDQFDS---------VMNYLFRESVIRFFATGEIHAER 393
Query: 179 YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRL 238
F+ +L RA +L A+G N + D+HD R
Sbjct: 394 --FDAELT-------RARMLYPEQ--------------AAQGLWN-LLDSHDTERFLTSC 429
Query: 239 GKELADAYLMISLLMPGVG--VTYYGDEIGMEG 269
G A L + M +G + YYGDEIGM G
Sbjct: 430 GGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 436
D+HD R G A L + M +G + YYGDEIGM G
Sbjct: 418 DSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR+D + A F E + K S+N D
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHA--FWREFRRLVK--SLNPDA 349
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
LI + E++ W + D++ V +Y E+ +++F A
Sbjct: 350 LI------VGEIWHDASGW-LMGDQFDS---------VMNYLFRESVIRFFATGEIHAER 393
Query: 179 YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRL 238
F+ +L RA +L A+G N + D+HD R
Sbjct: 394 --FDAELT-------RARMLYPEQ--------------AAQGLWN-LLDSHDTERFLTSC 429
Query: 239 GKELADAYLMISLLMPGVG--VTYYGDEIGMEG 269
G A L + M +G + YYGDEIGM G
Sbjct: 430 GGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 436
D+HD R G A L + M +G + YYGDEIGM G
Sbjct: 418 DSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN ++ + +++ ++ WLD GIDG R+DA+KHM
Sbjct: 200 DLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHM 235
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN ++ + +++ ++ WLD GIDG R+DA+KHM
Sbjct: 200 DLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHM 235
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR+D + A F E + K S+N D
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHA--FWREFRRLVK--SLNPDA 349
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
LI + E++ W + D++ V +Y E+ +++F A
Sbjct: 350 LI------VGEIWHDASGW-LMGDQFDS---------VMNYLFRESVIRFFATGEIHAER 393
Query: 179 YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRL 238
F+ +L RA +L A+G N + D+HD R
Sbjct: 394 --FDAELT-------RARMLYPEQ--------------AAQGLWN-LLDSHDTERFLTSC 429
Query: 239 GKELADAYLMISLLMPGVG--VTYYGDEIGMEG 269
G A L + M +G + YYGDEIGM G
Sbjct: 430 GGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 436
D+HD R G A L + M +G + YYGDEIGM G
Sbjct: 418 DSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 23/77 (29%)
Query: 228 NHDNPRVTNRL--GKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 285
+HD PR+ + + K L Y++I +PG V YYGDEIG+EG RDP+N
Sbjct: 534 SHDVPRIKSMVQNNKLLKLMYVLI-FALPGSPVIYYGDEIGLEG-------GRDPDN--- 582
Query: 286 ARADETRDPERTPMQWD 302
R PM WD
Sbjct: 583 ----------RRPMIWD 589
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 23/77 (29%)
Query: 395 NHDNPRVTNRL--GKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 452
+HD PR+ + + K L Y++I +PG V YYGDEIG+EG RDP+N
Sbjct: 534 SHDVPRIKSMVQNNKLLKLMYVLI-FALPGSPVIYYGDEIGLEG-------GRDPDN--- 582
Query: 453 ARADETRDPERTPMQWD 469
R PM WD
Sbjct: 583 ----------RRPMIWD 589
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 42 YDENRKMFYLHQFSA-KQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDA 91
Y N K FY F+ N + + + + +FW+DKGIDG+RID
Sbjct: 393 YFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWIDKGIDGFRIDV 443
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR++ + A F E + K S+N D
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLNVANEVDHA--FWREFRRLVK--SLNPDA 349
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
LI + E++ W + D++ V +Y E+ +++F A
Sbjct: 350 LI------VGEIWHDASGW-LMGDQFDS---------VMNYLFRESVIRFFATGEIHAER 393
Query: 179 YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRL 238
F+ +L RA +L A+G N + D+HD R
Sbjct: 394 --FDAELT-------RARMLYPEQ--------------AAQGLWN-LLDSHDTERFLTSC 429
Query: 239 GKELADAYLMISLLMPGVG--VTYYGDEIGMEG 269
G A L + M +G + YYGDEIGM G
Sbjct: 430 GGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 436
D+HD R G A L + M +G + YYGDEIGM G
Sbjct: 418 DSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 56/218 (25%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR+D + A F E + K S+N D
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHA--FWREFRRLVK--SLNPDA 349
Query: 119 LI-----HDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNG 173
LI HD + L + D++ V +Y E+ +++F
Sbjct: 350 LIVGAIWHDASGWL------------MGDQFDS---------VMNYLFRESVIRFFATGE 388
Query: 174 RPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPR 233
A F+ +L RA +L A+G N + D+HD R
Sbjct: 389 IHAER--FDAELT-------RARMLYPEQ--------------AAQGLWN-LLDSHDTER 424
Query: 234 VTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 269
G A L + M +G + YYGDEIGM G
Sbjct: 425 FLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 436
D+HD R G A L + M +G + YYGDEIGM G
Sbjct: 418 DSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD G+DG R+DA+KHM
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWLDLGVDGIRVDAVKHM 234
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD G+DG R+DA+KHM
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWLDLGVDGIRVDAVKHM 234
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD G+DG R+DA+KHM
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWLDLGVDGIRVDAVKHM 234
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD G+DG R+DA+KHM
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWLDLGVDGIRVDAVKHM 234
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD G+DG R+DA+KHM
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWLDLGVDGIRVDAVKHM 234
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
D N + + + + ++ WLD G+DG R+DA+KHM
Sbjct: 199 DFNHNNATIDKYFKDAIKLWLDMGVDGIRVDAVKHM 234
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
D N + + + + ++ WLD G+DG R+DA+KHM
Sbjct: 199 DFNHNNATIDKYFKDAIKLWLDMGVDGIRVDAVKHM 234
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 89/228 (39%), Gaps = 31/228 (13%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P+ N + +++E + + +WL GIDGWR+D + G +++
Sbjct: 179 PEFNHDNPEVREYIMEIAEYWLKFGIDGWRLDVPFEIKTPGFWQE--------------- 223
Query: 119 LIHDKTTDL-PELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAA 177
D+T + PE Y + W + +Q T+ V +Y T+ + AA
Sbjct: 224 -FRDRTKAINPEAYIVGEVW----GDSRQWLDGTQFDGVMNYLFAGPTIAF-------AA 271
Query: 178 HYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNR 237
+ V D + + K++ Q + T + +HD R+
Sbjct: 272 GDRVVLEQVQSRDYQPYPPLFAAEYATKIQEVLQLYP-WEIQLTQLNLLASHDTARLMTI 330
Query: 238 LGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNA 283
G ++A L LL+ PG YYGDE+G+ G + + R P A
Sbjct: 331 AGGDIASVELSTLLLLTFPGAPSIYYGDEVGLPGGIDPDSRRGFPLEA 378
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 395 NHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNA 450
+HD R+ G ++A L LL+ PG YYGDE+G+ G + + R P A
Sbjct: 321 SHDTARLMTIAGGDIASVELSTLLLLTFPGAPSIYYGDEVGLPGGIDPDSRRGFPLEA 378
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
D N + + + + ++ WLD G+DG R+DA+KHM
Sbjct: 193 DFNHNNATIDKYFKDAIKLWLDMGVDGIRVDAVKHM 228
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
D N + + + + ++ WLD G+DG R+DA+KHM
Sbjct: 199 DFNHNNATIDKYFKDAIKLWLDMGVDGIRVDAVKHM 234
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+DA+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHM 234
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN ++ + ++ ++ W+D GIDG R+DA+KHM
Sbjct: 195 DLNHQNPVIDRYLKDAVKMWIDMGIDGIRMDAVKHM 230
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 46/213 (21%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR++ + A F E + K S+N D
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLNVANEVDHA--FWREFRRLVK--SLNPDA 349
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
LI + E++ W + D++ V +Y E+ +++F A
Sbjct: 350 LI------VGEIWHDASGW-LMGDQFDS---------VMNYLFRESVIRFFATGEIHAER 393
Query: 179 YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRL 238
F+ +L RA +L A+G N + D+H+ R
Sbjct: 394 --FDAELT-------RARMLYPEQ--------------AAQGLWN-LLDSHNTERFLTSC 429
Query: 239 GKELADAYLMISLLMPGVG--VTYYGDEIGMEG 269
G A L + M +G + YYGDEIGM G
Sbjct: 430 GGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVG--VTYYGDEIGMEG 436
D+H+ R G A L + M +G + YYGDEIGM G
Sbjct: 418 DSHNTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG 462
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 89/238 (37%), Gaps = 67/238 (28%)
Query: 65 SKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKT 124
+ K+++A+E FWL G+DG+++ ++++ +A F E K S + + +
Sbjct: 121 ATKVKDALE----FWLQAGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGTNS 176
Query: 125 TDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQ 184
+DL ++ +L ES D+ T Y +G H
Sbjct: 177 SDLQQILSLL----------------------ESNKDLLLTSSYLSDSGSTGEH------ 208
Query: 185 LVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRV-TNRLGKELA 243
+K+ L A G + W + R+ T+ L +L
Sbjct: 209 -----------------------TKSLVTQYLNATG-NRWCSWSLSQARLLTSFLPAQLL 244
Query: 244 DAYLMISLLMPGVGVTYYGDEIG----------MEGPLVRNDERRDPNNAGGARADET 291
Y ++ +PG V YGDEIG ME P++ DE P+ G A+ T
Sbjct: 245 RLYQLMLFTLPGTPVFSYGDEIGLDAAALPGQPMEAPVMLWDESSFPDIPGAVSANMT 302
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 26/158 (16%)
Query: 401 VTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRD 460
+T+ L +L Y ++ +PG V YGDEIG++ A A +
Sbjct: 235 LTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLD-----------------AAALPGQP 277
Query: 461 PERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDT 520
E M WD + A V+ N + V+ Q + S L+R+LS R +
Sbjct: 278 MEAPVMLWDESSFPDIPGA------VSAN---MTVKGQSEDPGSLLSLFRRLSDQRSKER 328
Query: 521 MIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSI 558
+ G + R N+ ++V++NF +
Sbjct: 329 SLLHGDFHAFSAGPGLFSYIRHWDQNERFLVVLNFGDV 366
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+D +KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDVVKHM 234
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R++A+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMNAVKHM 234
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD G+DG R+DA+K+M
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWLDLGVDGIRVDAVKNM 234
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
D N + + + + ++ WLD G+DG R+ A+KHM
Sbjct: 199 DFNHNNATIDKYFKDAIKLWLDMGVDGIRVAAVKHM 234
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN + + ++ ++ WLD GIDG R+ A+KHM
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWLDLGIDGIRMAAVKHM 234
>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose
Complex
pdb|1UH4|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1MALTO-
Tridecaose Complex
pdb|2D0G|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P5, A Pullulan Model Oligosaccharide
pdb|2D0H|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P2, A Pullulan Model Oligosaccharide
Length = 637
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 381 TEMKRERAKFEAYDNHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 436
T +++ F + NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 458 TNVQQSMMNFLS--NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 228 NHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 269
NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 470 NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 381 TEMKRERAKFEAYDNHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 436
T +++ F + NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 458 TNVQQSMMNFLS--NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 228 NHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 269
NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 470 NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 381 TEMKRERAKFEAYDNHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 436
T +++ F + NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 458 TNVQQSMMNFLS--NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 228 NHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 269
NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 470 NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2,
A Pullulan Model Oligosaccharide
Length = 637
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 381 TEMKRERAKFEAYDNHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 436
T +++ F + NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 458 TNVQQSMMNFLS--NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 228 NHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 269
NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 470 NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 381 TEMKRERAKFEAYDNHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 436
T +++ F + NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 458 TNVQQSMMNFLS--NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 228 NHDNPRVTNRLGKELADAYLMISLLMPGVGV--TYYGDEIGMEG 269
NHD R R G +L YL + M VG YYGDE GM+G
Sbjct: 470 NHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG 513
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 388 AKFEAYDNHDNPRVTNRLGKELADAYLMI--SLLMPGVGVTYYGDEIGMEG---PLVRND 442
A F +HD PR+ G ++ L+ L G YYGDEIGM G P R
Sbjct: 415 AAFNLLGSHDTPRLLTVCGGDVRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKC 474
Query: 443 ERRDP 447
DP
Sbjct: 475 MVWDP 479
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 228 NHDNPRVTNRLGKELADAYLMI--SLLMPGVGVTYYGDEIGMEG---PLVRNDERRDP 280
+HD PR+ G ++ L+ L G YYGDEIGM G P R DP
Sbjct: 422 SHDTPRLLTVCGGDVRKVKLLFLFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDP 479
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 388 AKFEAYDNHDNPRVTNRLGKELADAYLMI--SLLMPGVGVTYYGDEIGMEG 436
A F +HD PR+ G ++ L+ L G YYGDEIGM G
Sbjct: 415 AAFNLLGSHDTPRLLTVCGGDVRKVKLLFLFQLTFTGSPCIYYGDEIGMTG 465
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 228 NHDNPRVTNRLGKELADAYLMI--SLLMPGVGVTYYGDEIGMEG 269
+HD PR+ G ++ L+ L G YYGDEIGM G
Sbjct: 422 SHDTPRLLTVCGGDVRKVKLLFLFQLTFTGSPCIYYGDEIGMTG 465
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 52 HQFSAKQPD-LNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEA 98
+ SA +PD + F + +L ++ ++DKG DGW +D K MF+
Sbjct: 51 QKISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQV 98
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 47/160 (29%)
Query: 416 ISLLMPGVGVTYYGDEIGMEGPLVRNDE--RRDPNNAGGARADETRDPERTPMQWDSTKH 473
I+L MPGV + Y GDE+ M ND R DP+ R E R R M W
Sbjct: 480 IALAMPGVPLIYMGDELAMV-----NDPGYRDDPH-----RQHEGRWLHRPAMDW----- 524
Query: 474 AGFSTARKTWLPVNPNYYYLNVEAQKK-ADWSTYKLYRKLSQLRRTDTMIYG-----AVS 527
+ AQ+ A + +YR+L L R + A++
Sbjct: 525 --------------------QLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALA 564
Query: 528 THILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSVM 567
+ LN V L+R D++I L NF+ + +V+L+ +
Sbjct: 565 SIALNDPRVFALTR----GDSFIALHNFSDQLLDVELAAI 600
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 249 ISLLMPGVGVTYYGDEIGM-EGPLVRNDERR 278
I+L MPGV + Y GDE+ M P R+D R
Sbjct: 480 IALAMPGVPLIYMGDELAMVNDPGYRDDPHR 510
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDA 91
P LN + K++E ++ V+ FW +KG+DG+R+D
Sbjct: 380 PRLNHDNPKVREFIKNVILFWTNKGVDGFRMDV 412
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 217 PAEGTSNWVYDNHDNPRVTNRLGKELADAYLMISLLM-PGVGVTYYGDEIGMEG 269
PAE DNHD R + +G + ++ L+ G+ +YGDEIG+ G
Sbjct: 489 PAEYLMYNFLDNHDVERFLDIVGDKRKYVCALVFLMTYKGIPSLFYGDEIGLRG 542
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLM-PGVGVTYYGDEIGMEG 436
DNHD R + +G + ++ L+ G+ +YGDEIG+ G
Sbjct: 499 DNHDVERFLDIVGDKRKYVCALVFLMTYKGIPSLFYGDEIGLRG 542
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 388 AKFEAYDNHDNPRVTNRLGKELADAYLMI--SLLMPGVGVTYYGDEIGMEG 436
A F +HD R+ G ++ L+ L G YYGDEIGM G
Sbjct: 415 AAFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTG 465
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 228 NHDNPRVTNRLGKELADAYLMI--SLLMPGVGVTYYGDEIGMEG 269
+HD R+ G ++ L+ L G YYGDEIGM G
Sbjct: 422 SHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTG 465
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 388 AKFEAYDNHDNPRVTNRLGKELADAYLMI--SLLMPGVGVTYYGDEIGMEG 436
A F +HD R+ G ++ L+ L G YYGDEIGM G
Sbjct: 415 AAFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTG 465
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 97/266 (36%), Gaps = 55/266 (20%)
Query: 7 IAPYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSK 66
AP+ + VWK G+ +W + T E R + F + P LN +
Sbjct: 252 FAPFQD--VWKNGESSKY----KDWFHIHEFPLQT--EPRPNYDTFAFVPQMPKLNTANP 303
Query: 67 KLQEAMEAVLRFWL-DKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTT 125
+++ + V +W+ + IDGWR+D + D ++
Sbjct: 304 EVKRYLLDVATYWIREFDIDGWRLDVANEI-------DHEF------------------- 337
Query: 126 DLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQL 185
WR E K IL E + D ++ +++ +YPF +
Sbjct: 338 -----------WREFRQEVKALKPDVYIL-GEIWHDAMPWLRGDQFDA--VMNYPFTDGV 383
Query: 186 VLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGKELADA 245
+ K E + N M V + + +N+ E N + +HD R+ G ++
Sbjct: 384 LRFFAKEEISARQFANQMMHVL--HSYPNNV-NEAAFN-LLGSHDTSRILTVCGGDIRKV 439
Query: 246 YLMI--SLLMPGVGVTYYGDEIGMEG 269
L+ L G YYGDEIGM G
Sbjct: 440 KLLFLFQLTFTGSPCIYYGDEIGMTG 465
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 387 RAKFEAYDNHDNPRVTN--RLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDER 444
RA+ +HD PR+ + R E A L + L+PG YYG+E+G G
Sbjct: 305 RAQXNLLTSHDTPRLLSLXRGSVERARLALALLFLLPGNPTVYYGEEVGXAG-------G 357
Query: 445 RDPNNAGGARADETR 459
+DP N GG +E R
Sbjct: 358 KDPENRGGXVWEEAR 372
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRID 90
P L + ++E + AV W+ G+DGWR+D
Sbjct: 171 PKLKVETPAVREYLLAVAEHWIRFGVDGWRLD 202
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 228 NHDNPRVTN--RLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 285
+HD PR+ + R E A L + L+PG YYG+E+G G +DP N GG
Sbjct: 313 SHDTPRLLSLXRGSVERARLALALLFLLPGNPTVYYGEEVGXAG-------GKDPENRGG 365
Query: 286 ARADETR 292
+E R
Sbjct: 366 XVWEEAR 372
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 22/86 (25%)
Query: 390 FEAYDNHDNPRVTNRLG--KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDP 447
F D+HD R+ + K ++ G YYGDE+G++G DP
Sbjct: 414 FNLLDSHDTARLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDG-------GHDP 466
Query: 448 NNAGGARADETRDPERTPMQWDSTKH 473
R M+WD TKH
Sbjct: 467 GC-------------RKCMEWDETKH 479
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 86/256 (33%), Gaps = 67/256 (26%)
Query: 54 FSAKQPDLNFRSKKLQEAMEAVLRFWL-DKGIDGWRIDALKHMFEAGDFKDEKYKPGKEG 112
F P LN ++E + +W+ + GIDGWR+D + + F E + K+
Sbjct: 288 FEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEV--SHQFWREFRRVVKQA 345
Query: 113 SMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYN 172
+ P+ Y + W H + +E + M Y N
Sbjct: 346 N--------------PDAYILGEVW------------HESSIWLEG-DQFDAVMNYPFTN 378
Query: 173 GRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNP 232
A F + D +K L L Y + S+ F + D+HD
Sbjct: 379 ----AVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFN-----------LLDSHDTA 423
Query: 233 RVTNRL--GKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADE 290
R+ + K ++ G YYGDE+G++G DP
Sbjct: 424 RLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDG-------GHDPGC-------- 468
Query: 291 TRDPERTPMQWDSTKH 306
R M+WD TKH
Sbjct: 469 -----RKCMEWDETKH 479
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 87/238 (36%), Gaps = 67/238 (28%)
Query: 65 SKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKT 124
+ K+++A+E FWL G+DG+++ ++++ +A F E K S + + +
Sbjct: 121 ATKVKDALE----FWLQAGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGTNS 176
Query: 125 TDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQ 184
+DL ++ +L ES D+ T Y +G H
Sbjct: 177 SDLQQILSLL----------------------ESNKDLLLTSSYLSDSGSTGEH------ 208
Query: 185 LVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPR-VTNRLGKELA 243
+K+ L A G + W + R +T+ L +L
Sbjct: 209 -----------------------TKSLVTQYLNATG-NRWCSWSLSQARLLTSFLPAQLL 244
Query: 244 DAYLMISLLMPGVGVTYYGDEIGM----------EGPLVRNDERRDPNNAGGARADET 291
Y + +PG V YGDEIG+ E P+ DE P+ G A+ T
Sbjct: 245 RLYQLXLFTLPGTPVFSYGDEIGLDAAALPGQPXEAPVXLWDESSFPDIPGAVSANXT 302
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 28/140 (20%)
Query: 420 MPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQ-WDSTKHAGFST 478
+PG V YGDEIG++ + P P+ WD +
Sbjct: 254 LPGTPVFSYGDEIGLDAAALPG------------------QPXEAPVXLWDESSFPDIPG 295
Query: 479 ARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHILNGEWVLG 538
A V+ N V+ Q + S L+R+LS R + + G +
Sbjct: 296 A------VSANX---TVKGQSEDPGSLLSLFRRLSDQRSKERSLLHGDFHAFSAGPGLFS 346
Query: 539 LSRSMPGNDTYIVLINFNSI 558
R N+ ++V++NF +
Sbjct: 347 YIRHWDQNERFLVVLNFGDV 366
>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 471
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN S ++ + + +D G+ G+R+DA KHM
Sbjct: 155 DLNAGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHM 190
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
D N ++ ++Q ++ L L+ G DG+R DA KH+
Sbjct: 143 DWNTQNTQVQSYLKRFLERALNDGADGFRFDAAKHI 178
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
D N ++ ++Q ++ L L+ G DG+R DA KH+
Sbjct: 146 DWNTQNTQVQSYLKRFLERALNDGADGFRFDAAKHI 181
>pdb|3K8P|C Chain C, Structural Basis For Vesicle Tethering By The Dsl1 Complex
Length = 357
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 25 TEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNF 63
+E N+W ++ + Y EN K+ L + ++++ DLN
Sbjct: 144 SEKVNDWTQLYKDVRYLYTENPKLLQLXELNSRRLDLNL 182
>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
Amaranth Alpha-Amylase Inhibitor
pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
Length = 471
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95
DLN S ++ + + +D G+ G+R+DA KHM
Sbjct: 155 DLNQGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHM 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,367,606
Number of Sequences: 62578
Number of extensions: 874305
Number of successful extensions: 2325
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1979
Number of HSP's gapped (non-prelim): 240
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)