Query psy15648
Match_columns 567
No_of_seqs 380 out of 3009
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 18:01:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10933 trehalose-6-phosphate 100.0 1.5E-58 3.3E-63 493.1 28.4 350 2-379 115-497 (551)
2 TIGR02403 trehalose_treC alpha 100.0 2.4E-57 5.2E-62 485.0 29.1 348 3-379 110-491 (543)
3 TIGR02456 treS_nterm trehalose 100.0 8.1E-47 1.8E-51 405.1 30.2 321 6-379 115-480 (539)
4 PRK13840 sucrose phosphorylase 100.0 7.1E-39 1.5E-43 330.3 25.5 364 5-563 103-474 (495)
5 TIGR03852 sucrose_gtfA sucrose 100.0 7.4E-38 1.6E-42 320.8 26.5 346 7-562 100-467 (470)
6 KOG0471|consensus 100.0 1.7E-38 3.8E-43 337.2 22.2 354 7-379 127-494 (545)
7 PRK10785 maltodextrin glucosid 100.0 3.3E-38 7.1E-43 341.0 21.0 253 6-378 272-549 (598)
8 PRK09505 malS alpha-amylase; R 100.0 8.2E-37 1.8E-41 328.8 19.1 253 45-379 412-673 (683)
9 TIGR02455 TreS_stutzeri trehal 100.0 1E-33 2.2E-38 292.2 26.8 364 36-564 229-639 (688)
10 COG0366 AmyA Glycosidases [Car 100.0 3.6E-32 7.9E-37 293.8 25.9 340 7-379 117-475 (505)
11 PF00128 Alpha-amylase: Alpha 100.0 2.8E-31 6.1E-36 268.8 13.3 213 6-270 91-313 (316)
12 PRK09441 cytoplasmic alpha-amy 100.0 3E-30 6.5E-35 273.8 17.3 221 43-378 189-417 (479)
13 PRK10933 trehalose-6-phosphate 100.0 3.5E-30 7.5E-35 275.4 14.9 175 389-565 317-515 (551)
14 TIGR02403 trehalose_treC alpha 100.0 5.2E-30 1.1E-34 274.6 15.3 176 389-566 311-510 (543)
15 TIGR02402 trehalose_TreZ malto 100.0 7.2E-30 1.6E-34 272.4 16.1 166 386-562 364-541 (542)
16 TIGR02104 pulA_typeI pullulana 99.9 2.3E-27 5E-32 257.7 15.1 233 58-377 286-562 (605)
17 PLN00196 alpha-amylase; Provis 99.9 9.9E-26 2.1E-30 232.3 18.5 226 28-375 139-392 (428)
18 PRK14510 putative bifunctional 99.9 8.8E-26 1.9E-30 259.0 16.2 229 60-377 312-599 (1221)
19 TIGR01515 branching_enzym alph 99.9 5.9E-26 1.3E-30 246.5 12.9 253 57-377 261-534 (613)
20 PRK12313 glycogen branching en 99.9 1.7E-25 3.6E-30 244.7 16.4 251 57-376 275-546 (633)
21 TIGR02456 treS_nterm trehalose 99.9 6.4E-25 1.4E-29 236.0 17.2 150 399-565 340-498 (539)
22 PRK05402 glycogen branching en 99.9 7.1E-25 1.5E-29 242.5 14.9 251 59-377 372-643 (726)
23 PRK14706 glycogen branching en 99.9 1.1E-24 2.4E-29 235.0 15.6 250 59-378 274-543 (639)
24 TIGR02100 glgX_debranch glycog 99.9 1.1E-24 2.3E-29 237.3 14.8 228 51-361 301-579 (688)
25 PLN02361 alpha-amylase 99.9 2E-24 4.4E-29 219.8 15.2 198 53-371 141-364 (401)
26 PRK03705 glycogen debranching 99.9 3.3E-24 7.1E-29 231.7 12.5 220 54-359 299-569 (658)
27 PRK12568 glycogen branching en 99.9 5E-23 1.1E-27 221.4 17.3 252 60-378 377-648 (730)
28 PRK14705 glycogen branching en 99.9 2.6E-21 5.7E-26 218.2 18.1 253 58-377 871-1143(1224)
29 PRK10785 maltodextrin glucosid 99.9 1.6E-21 3.5E-26 211.3 13.4 126 389-565 439-567 (598)
30 PLN02960 alpha-amylase 99.8 2.9E-20 6.4E-25 200.2 13.6 261 57-374 522-811 (897)
31 TIGR02102 pullulan_Gpos pullul 99.8 9E-20 1.9E-24 204.6 14.7 176 58-271 609-816 (1111)
32 PLN02784 alpha-amylase 99.8 1.3E-19 2.7E-24 194.4 15.2 166 47-265 629-818 (894)
33 TIGR02103 pullul_strch alpha-1 99.8 4.1E-19 8.8E-24 195.7 19.4 164 384-562 646-849 (898)
34 TIGR02401 trehalose_TreY malto 99.8 9.2E-19 2E-23 189.8 12.2 139 389-557 616-769 (825)
35 PRK09505 malS alpha-amylase; R 99.8 8E-19 1.7E-23 189.9 11.2 122 389-555 558-681 (683)
36 PLN02877 alpha-amylase/limit d 99.8 6.1E-18 1.3E-22 185.8 17.3 166 385-566 716-924 (970)
37 PLN02447 1,4-alpha-glucan-bran 99.8 9.1E-18 2E-22 181.4 17.6 262 59-375 358-652 (758)
38 PLN03244 alpha-amylase; Provis 99.7 3.4E-17 7.5E-22 173.3 17.7 262 59-375 499-787 (872)
39 TIGR02104 pulA_typeI pullulana 99.7 1.5E-17 3.4E-22 181.1 11.2 139 385-565 426-587 (605)
40 COG0296 GlgB 1,4-alpha-glucan 99.7 2.5E-17 5.3E-22 173.6 11.4 202 61-281 273-486 (628)
41 KOG0471|consensus 99.6 6.7E-15 1.5E-19 157.2 10.8 166 390-566 348-514 (545)
42 TIGR02402 trehalose_TreZ malto 99.5 8.6E-15 1.9E-19 156.9 8.7 249 57-373 207-522 (542)
43 COG1523 PulA Type II secretory 99.5 1.5E-14 3.3E-19 155.3 10.0 225 55-361 323-598 (697)
44 PRK12313 glycogen branching en 99.5 2.4E-14 5.3E-19 157.1 11.2 121 392-560 424-564 (633)
45 PRK05402 glycogen branching en 99.5 5.1E-14 1.1E-18 156.4 12.2 122 391-560 519-660 (726)
46 COG0366 AmyA Glycosidases [Car 99.5 7.3E-14 1.6E-18 151.1 13.1 170 392-564 310-492 (505)
47 TIGR01515 branching_enzym alph 99.5 7E-14 1.5E-18 152.4 12.1 122 392-561 411-552 (613)
48 PRK14510 putative bifunctional 99.5 4.7E-14 1E-18 162.9 10.1 137 386-566 440-648 (1221)
49 PRK09441 cytoplasmic alpha-amy 99.5 2.6E-13 5.6E-18 144.5 12.0 113 387-564 320-438 (479)
50 TIGR02100 glgX_debranch glycog 99.4 4.1E-13 8.9E-18 147.0 12.2 116 409-566 501-649 (688)
51 PRK14706 glycogen branching en 99.4 1.1E-12 2.3E-17 142.4 12.7 119 392-558 419-557 (639)
52 PRK03705 glycogen debranching 99.3 3.3E-12 7.3E-17 138.8 9.8 110 409-566 495-624 (658)
53 PRK14511 maltooligosyl trehalo 99.3 1.8E-11 3.9E-16 134.2 10.4 113 411-558 704-823 (879)
54 TIGR02102 pullulan_Gpos pullul 99.2 6E-11 1.3E-15 134.2 12.0 161 384-566 746-957 (1111)
55 TIGR02401 trehalose_TreY malto 99.2 1.2E-11 2.7E-16 134.9 5.5 125 224-378 618-758 (825)
56 PLN00196 alpha-amylase; Provis 99.1 1.8E-10 4E-15 119.4 10.8 98 385-556 302-402 (428)
57 KOG2212|consensus 99.1 5.1E-10 1.1E-14 106.9 10.6 160 57-261 182-356 (504)
58 PRK12568 glycogen branching en 99.1 4E-10 8.6E-15 122.4 10.9 121 392-560 524-665 (730)
59 PRK14705 glycogen branching en 99.0 1.3E-09 2.7E-14 124.5 11.8 105 409-561 1048-1160(1224)
60 PLN02960 alpha-amylase 99.0 1.7E-09 3.6E-14 117.9 9.5 101 414-558 721-823 (897)
61 PRK14511 maltooligosyl trehalo 98.9 7.8E-10 1.7E-14 121.5 6.0 100 244-378 704-811 (879)
62 KOG0470|consensus 98.9 7.1E-09 1.5E-13 109.2 9.5 44 59-102 370-414 (757)
63 PLN02361 alpha-amylase 98.9 1.2E-08 2.6E-13 104.7 10.7 98 386-555 277-377 (401)
64 PF00128 Alpha-amylase: Alpha 98.8 2.1E-09 4.5E-14 108.6 4.4 52 386-437 260-313 (316)
65 TIGR02455 TreS_stutzeri trehal 98.7 8.2E-08 1.8E-12 101.2 9.9 114 233-378 477-619 (688)
66 PF11941 DUF3459: Domain of un 98.6 9.6E-08 2.1E-12 77.1 6.0 55 508-563 1-59 (89)
67 TIGR03852 sucrose_gtfA sucrose 98.6 5.5E-08 1.2E-12 101.0 5.0 109 232-378 337-449 (470)
68 PLN03244 alpha-amylase; Provis 98.4 2.1E-06 4.5E-11 92.6 10.7 107 409-558 689-798 (872)
69 COG0296 GlgB 1,4-alpha-glucan 98.2 2.4E-06 5.2E-11 91.2 6.2 63 386-448 413-486 (628)
70 PLN02447 1,4-alpha-glucan-bran 98.2 8.1E-06 1.8E-10 89.5 9.9 107 411-558 554-663 (758)
71 PRK13840 sucrose phosphorylase 98.0 4E-06 8.6E-11 88.0 4.8 98 242-378 359-457 (495)
72 PF02324 Glyco_hydro_70: Glyco 97.8 5.4E-05 1.2E-09 79.7 8.6 36 60-95 145-190 (809)
73 COG1523 PulA Type II secretory 97.8 7E-05 1.5E-09 81.6 9.4 114 409-566 521-657 (697)
74 PLN02877 alpha-amylase/limit d 97.4 0.00011 2.4E-09 82.5 3.1 68 59-160 527-599 (970)
75 TIGR02103 pullul_strch alpha-1 97.3 0.00015 3.3E-09 81.4 3.7 66 57-160 462-528 (898)
76 PRK14507 putative bifunctional 97.3 0.00095 2E-08 79.3 9.4 112 414-553 1500-1622(1693)
77 PLN02784 alpha-amylase 97.2 0.0012 2.5E-08 72.9 8.8 44 389-432 773-818 (894)
78 PF14872 GHL5: Hypothetical gl 97.0 0.0075 1.6E-07 63.6 11.7 78 59-159 357-434 (811)
79 COG3280 TreY Maltooligosyl tre 96.3 0.0026 5.6E-08 68.1 3.2 110 413-554 711-825 (889)
80 PF10438 Cyc-maltodext_C: Cycl 96.1 0.0089 1.9E-07 46.1 4.3 37 529-566 4-40 (78)
81 PRK14507 putative bifunctional 95.6 0.025 5.5E-07 67.7 7.1 40 61-100 1044-1084(1693)
82 PF11852 DUF3372: Domain of un 95.0 0.052 1.1E-06 48.4 5.7 62 505-566 43-124 (168)
83 KOG0470|consensus 94.9 0.082 1.8E-06 57.1 7.7 21 417-437 581-601 (757)
84 PF11941 DUF3459: Domain of un 94.4 0.022 4.9E-07 45.5 1.8 38 341-378 1-42 (89)
85 KOG3625|consensus 93.4 0.32 6.9E-06 53.7 8.6 72 55-165 495-571 (1521)
86 COG3280 TreY Maltooligosyl tre 93.3 0.056 1.2E-06 58.3 2.8 45 57-101 269-314 (889)
87 TIGR01531 glyc_debranch glycog 93.1 0.37 8.1E-06 56.5 9.1 76 55-169 473-553 (1464)
88 PF02806 Alpha-amylase_C: Alph 90.6 0.56 1.2E-05 37.8 5.2 28 531-558 6-33 (95)
89 TIGR01370 cysRS possible cyste 89.6 1.3 2.9E-05 44.2 7.8 75 60-156 137-211 (315)
90 cd06592 GH31_glucosidase_KIAA1 85.8 0.85 1.8E-05 45.7 4.0 36 59-94 130-166 (303)
91 cd06597 GH31_transferase_CtsY 85.8 1 2.2E-05 46.0 4.5 37 59-95 152-189 (340)
92 PF02638 DUF187: Glycosyl hydr 85.0 3.3 7.1E-05 41.6 7.7 35 58-92 128-163 (311)
93 cd06593 GH31_xylosidase_YicI Y 84.3 1.9 4.2E-05 43.3 5.7 37 59-95 125-161 (308)
94 PF02065 Melibiase: Melibiase; 83.3 5.9 0.00013 41.1 8.9 38 58-95 157-195 (394)
95 PF08533 Glyco_hydro_42C: Beta 81.7 1.2 2.7E-05 32.1 2.4 29 536-565 2-30 (58)
96 cd06598 GH31_transferase_CtsZ 76.2 3 6.5E-05 42.1 4.0 34 60-93 131-164 (317)
97 COG1501 Alpha-glucosidases, fa 75.6 4.6 0.0001 45.7 5.6 50 47-96 367-418 (772)
98 cd06604 GH31_glucosidase_II_Ma 72.3 4.3 9.3E-05 41.4 4.0 35 60-94 126-160 (339)
99 PRK10658 putative alpha-glucos 71.7 6.2 0.00013 44.0 5.3 39 57-95 382-420 (665)
100 KOG2212|consensus 71.0 28 0.00061 34.7 8.9 34 388-421 307-348 (504)
101 cd06594 GH31_glucosidase_YihQ 69.7 5.2 0.00011 40.3 3.9 37 59-95 131-168 (317)
102 cd06599 GH31_glycosidase_Aec37 69.6 5.2 0.00011 40.3 3.9 35 60-94 134-169 (317)
103 cd06600 GH31_MGAM-like This fa 68.5 5.8 0.00012 40.0 4.0 34 60-93 126-160 (317)
104 PF09083 DUF1923: Domain of un 66.7 21 0.00046 24.8 5.1 29 534-563 9-37 (64)
105 cd06591 GH31_xylosidase_XylS X 65.8 7.1 0.00015 39.4 4.0 38 58-95 123-161 (319)
106 cd06601 GH31_lyase_GLase GLase 60.7 10 0.00022 38.5 4.0 33 61-93 101-133 (332)
107 PF14701 hDGE_amylase: glucano 60.7 20 0.00043 37.4 6.1 40 55-95 360-404 (423)
108 cd06602 GH31_MGAM_SI_GAA This 60.6 20 0.00043 36.6 6.1 35 59-93 130-165 (339)
109 PF01055 Glyco_hydro_31: Glyco 56.9 13 0.00027 39.5 4.2 37 59-95 145-182 (441)
110 PLN02763 hydrolase, hydrolyzin 56.7 16 0.00036 42.2 5.2 44 50-93 292-336 (978)
111 smart00632 Aamy_C Aamy_C domai 53.1 30 0.00064 26.8 4.7 28 532-563 6-33 (81)
112 cd02875 GH18_chitobiase Chitob 47.5 63 0.0014 33.2 7.4 32 59-90 87-119 (358)
113 PRK10426 alpha-glucosidase; Pr 47.4 20 0.00044 39.8 4.0 36 60-95 329-365 (635)
114 cd02879 GH18_plant_chitinase_c 46.9 77 0.0017 31.6 7.7 27 64-90 88-115 (299)
115 PF13200 DUF4015: Putative gly 46.3 47 0.001 33.3 6.0 39 57-95 111-149 (316)
116 PF14872 GHL5: Hypothetical gl 43.4 47 0.001 36.2 5.6 61 505-565 700-773 (811)
117 PF13199 Glyco_hydro_66: Glyco 42.8 25 0.00055 38.2 3.7 36 60-95 234-270 (559)
118 cd06548 GH18_chitinase The GH1 41.7 1.5E+02 0.0032 29.8 9.0 27 64-90 105-132 (322)
119 cd06595 GH31_xylosidase_XylS-l 36.2 45 0.00098 33.1 4.1 33 60-92 125-158 (292)
120 COG2342 Predicted extracellula 35.8 1.1E+02 0.0024 29.8 6.4 31 65-95 121-151 (300)
121 smart00636 Glyco_18 Glycosyl h 32.8 1.7E+02 0.0036 29.6 7.8 28 63-90 86-114 (334)
122 cd06603 GH31_GANC_GANAB_alpha 30.7 89 0.0019 31.8 5.3 35 59-93 125-162 (339)
123 cd06549 GH18_trifunctional GH1 30.5 1E+02 0.0023 30.6 5.7 29 63-91 83-112 (298)
124 COG1649 Uncharacterized protei 29.8 70 0.0015 33.3 4.3 47 48-94 163-210 (418)
125 cd00598 GH18_chitinase-like Th 28.8 1.4E+02 0.003 27.5 6.0 29 63-91 83-112 (210)
126 cd02872 GH18_chitolectin_chito 25.6 2.1E+02 0.0046 29.2 7.2 27 64-90 92-119 (362)
127 cd02874 GH18_CFLE_spore_hydrol 25.5 1.3E+02 0.0027 30.1 5.4 29 63-91 82-111 (313)
128 cd02876 GH18_SI-CLP Stabilin-1 24.3 2.2E+02 0.0048 28.5 6.9 27 64-90 88-115 (318)
129 PLN02635 disproportionating en 22.9 4.6E+02 0.01 28.6 9.1 13 83-95 316-328 (538)
130 PF00704 Glyco_hydro_18: Glyco 22.8 1.8E+02 0.0039 29.2 6.0 56 65-144 96-152 (343)
131 cd06545 GH18_3CO4_chitinase Th 22.2 2.1E+02 0.0046 27.5 6.0 29 63-91 78-107 (253)
132 PF03711 OKR_DC_1_C: Orn/Lys/A 21.6 76 0.0016 27.5 2.4 19 505-523 105-123 (136)
133 PF10632 He_PIG_assoc: He_PIG 21.0 49 0.0011 20.0 0.7 10 252-261 11-20 (29)
No 1
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.5e-58 Score=493.07 Aligned_cols=350 Identities=29% Similarity=0.514 Sum_probs=284.8
Q ss_pred CCCCCCCCCCceEEeeeCCCCCCCCCCCCcccccCCCcceeeCCccceeeccCCCCCCccCCCCHHHHHHHHHHHHHHHh
Q psy15648 2 NTTAGIAPYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLD 81 (567)
Q Consensus 2 ~a~~~~~~~~d~y~w~~~~~~~~~~~p~~w~s~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~ 81 (567)
++.++++||+|||+|+++. ...+|++|.+.|++++|.|++.+++||+|.|.++|||||++||+||++|+++++||++
T Consensus 115 ~~~~~~~~y~d~y~~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~ 191 (551)
T PRK10933 115 EALNKESPYRQFYIWRDGE---PETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWAD 191 (551)
T ss_pred hhcCCCCCCcCceEecCCC---CCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHHH
Confidence 3456789999999999754 2456889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccC-
Q psy15648 82 KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYT- 160 (567)
Q Consensus 82 ~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~- 160 (567)
+||||||||+|+++.++..+++.+... ...+..++++++++|+++++.+.. .+++++|||++.
T Consensus 192 ~GvDGfRlDa~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~vgE~~~~ 255 (551)
T PRK10933 192 RGVDGLRLDVVNLISKDQDFPDDLDGD-----------GRRFYTDGPRAHEFLQEMNRDVFT-----PRGLMTVGEMSST 255 (551)
T ss_pred CCCcEEEEcchhhcCcCCCCCCCcccc-----------cccccCCChHHHHHHHHHHHHhhc-----ccCcEEEEeecCC
Confidence 999999999999998887777543211 112335678999999999875422 346899999997
Q ss_pred CHHHHhhhhccCCCCCCCcccccccccC--CCCC------cchHHHhhhhhhhHhHHHHHHHhCCCCCCceeeccCCCCC
Q psy15648 161 DIENTMKYFKYNGRPAAHYPFNFQLVLD--PDKG------ERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNP 232 (567)
Q Consensus 161 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~--l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~ 232 (567)
+.+.+..|... .+..+++.|+|..... +... .....+ ++.+..+...+....|+.+|++|||++
T Consensus 256 ~~~~~~~y~~~-~~~~~~~~fnf~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fl~NHD~~ 327 (551)
T PRK10933 256 SLEHCQRYAAL-TGSELSMTFNFHHLKVDYPNGEKWTLAKPDFVAL-------KTLFRHWQQGMHNVAWNALFWCNHDQP 327 (551)
T ss_pred CHHHHHHhhcc-cCCeeeeEecHHHhhhhhccCCcccccccCHHHH-------HHHHHHHHHhhcccCeeccccCCCCcc
Confidence 44555565442 2356888888864321 1110 122344 677777877777778888999999999
Q ss_pred cccccCCch------HHHHHHHHHHhCCCceeeeccccccCCCCC-CCCCcccCccccCCCC----------------CC
Q psy15648 233 RVTNRLGKE------LADAYLMISLLMPGVGVTYYGDEIGMEGPL-VRNDERRDPNNAGGAR----------------AD 289 (567)
Q Consensus 233 R~~~~~~~~------~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~-~~~~~~~d~~~~~~~~----------------~~ 289 (567)
|++++++++ .++++++++||+||+|+||||||+||.+.. .++++++|+...+.+. ..
T Consensus 328 R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~ 407 (551)
T PRK10933 328 RIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILAS 407 (551)
T ss_pred cHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhc
Confidence 999999854 368889999999999999999999999964 5667888887755421 23
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEEeecCCCc
Q psy15648 290 ETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVSTHILNGEW 368 (567)
Q Consensus 290 ~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~~~~~~~~ 368 (567)
.+||++|+||+|++..++|||++ +||+++..+|.++||++|..++.|++++||+||+||+++ +|+.|++..+...++.
T Consensus 408 ~~Rd~~RtPMqW~~~~~~GFs~~-~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~~~~~ 486 (551)
T PRK10933 408 KSRDNSRTPMQWDNGDNAGFTQG-EPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLPNHPS 486 (551)
T ss_pred cCCCCCccccccCCCCCCCCCCC-CCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEeccCCCc
Confidence 57999999999999999999998 799999999999999999999999999999999999998 9999999977654568
Q ss_pred EEEEeccccch
Q psy15648 369 VLGLSRAANML 379 (567)
Q Consensus 369 v~~f~R~~~~~ 379 (567)
|++|.|..+++
T Consensus 487 v~af~R~~~~~ 497 (551)
T PRK10933 487 LWCYRREWQGQ 497 (551)
T ss_pred EEEEEEEcCCc
Confidence 99999987653
No 2
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=2.4e-57 Score=485.02 Aligned_cols=348 Identities=30% Similarity=0.534 Sum_probs=282.1
Q ss_pred CCCCCCCCCceEEeeeCCCCCCCCCCCCcccccCCCcceeeCCccceeeccCCCCCCccCCCCHHHHHHHHHHHHHHHhC
Q psy15648 3 TTAGIAPYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDK 82 (567)
Q Consensus 3 a~~~~~~~~d~y~w~~~~~~~~~~~p~~w~s~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~~ 82 (567)
++.+++||+|||+|++.. +.+|++|.+.|++++|.+++.+++||++.|.+.|||||++||+||++|.++++||++.
T Consensus 110 ~~~~~~~y~~~y~~~~~~----~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~~~ 185 (543)
T TIGR02403 110 ALAGDSPYRDFYIWRDPK----GKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWRDK 185 (543)
T ss_pred hhcCCCcccCceEecCCC----CCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHHHc
Confidence 344589999999999753 3568899999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccC-C
Q psy15648 83 GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYT-D 161 (567)
Q Consensus 83 GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~-~ 161 (567)
||||||||+|++|.++..+++.+... ...+..+.++.++||+++++.++. ++++++|||++. +
T Consensus 186 giDGfRlDa~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~lvgE~~~~~ 249 (543)
T TIGR02403 186 GVDGFRLDVINLISKDQFFEDDEIGD-----------GRRFYTDGPRVHEYLQEMNQEVFG-----DNDSVTVGEMSSTT 249 (543)
T ss_pred CCCEEEEeeehhhccCcccCCCCCCC-----------CccccCCChHHHHHHHHHHHHhhc-----cCCeEEEEEeCCCC
Confidence 99999999999998776666543211 012234678899999999887654 478999999996 4
Q ss_pred HHHHhhhhccCCCCCCCcccccccccC-CC-C------CcchHHHhhhhhhhHhHHHHHHHhCC-CCCCceeeccCCCCC
Q psy15648 162 IENTMKYFKYNGRPAAHYPFNFQLVLD-PD-K------GERALVLILNHYMKVKSKNQFKDNLP-AEGTSNWVYDNHDNP 232 (567)
Q Consensus 162 ~~~~~~y~~~~~~~~~~~~~~~~~~~~-l~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fl~nHD~~ 232 (567)
.+....|.. ..+..++++|+|..... +. . ..+...+ ...+..+...++ ...+..+|++|||++
T Consensus 250 ~~~~~~y~~-~~~~~~d~~~nf~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~fl~NHD~~ 321 (543)
T TIGR02403 250 IENCIRYSN-PENKELSMVFTFHHLKVDYPNGEKWTLAKFDFAKL-------KEIFSTWQTGMQAGGGWNALFWNNHDQP 321 (543)
T ss_pred HHHHHhhhC-CCCCeeCeEEChhhhhchhccccccccCCCCHHHH-------HHHHHHHHHhccccCcceeeecCCCChh
Confidence 445555543 23457889998874321 11 1 1123344 666777776665 556777899999999
Q ss_pred cccccCCch------HHHHHHHHHHhCCCceeeeccccccCCCCC-CCCCcccCccccCCCC----------------CC
Q psy15648 233 RVTNRLGKE------LADAYLMISLLMPGVGVTYYGDEIGMEGPL-VRNDERRDPNNAGGAR----------------AD 289 (567)
Q Consensus 233 R~~~~~~~~------~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~-~~~~~~~d~~~~~~~~----------------~~ 289 (567)
|+++++++. .++++++++||+||+||||||||+||.+.. .++++++|+...+.+. ..
T Consensus 322 R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~ 401 (543)
T TIGR02403 322 RAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQ 401 (543)
T ss_pred hHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhc
Confidence 999999853 478899999999999999999999999974 5566778877665421 23
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEEeecCCCc
Q psy15648 290 ETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVSTHILNGEW 368 (567)
Q Consensus 290 ~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~~~~~~~~ 368 (567)
.+||++|+||+|++..++||+++ +||+++..+|..+||++|.+++.|++++||+||+||+++ +|+.|+++.+..++++
T Consensus 402 ~~rd~~RtPm~W~~~~~aGFs~~-~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~~~~~~~ 480 (543)
T TIGR02403 402 KSRDNSRTPMQWNNEKNAGFTTG-KPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFLLPDDPS 480 (543)
T ss_pred cCCCCCccccccCCCCCCCCCCC-CCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEeecCCCc
Confidence 57889999999999999999984 799999999999999999999999999999999999998 9999999988774457
Q ss_pred EEEEeccccch
Q psy15648 369 VLGLSRAANML 379 (567)
Q Consensus 369 v~~f~R~~~~~ 379 (567)
|++|.|..+++
T Consensus 481 v~a~~R~~~~~ 491 (543)
T TIGR02403 481 VWAYTRTYKNQ 491 (543)
T ss_pred EEEEEEEcCCc
Confidence 99999987653
No 3
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=8.1e-47 Score=405.09 Aligned_cols=321 Identities=30% Similarity=0.512 Sum_probs=247.8
Q ss_pred CCCCCCceEEeeeCCCCCCCCCCCCcccc--cCCCcceeeCCccceeeccCCCCCCccCCCCHHHHHHHHHHHHHHHhCC
Q psy15648 6 GIAPYDEYYVWKEGKGVNKTEPPNNWVSV--FSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDKG 83 (567)
Q Consensus 6 ~~~~~~d~y~w~~~~~~~~~~~p~~w~s~--f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~~G 83 (567)
++++|++||+|.+.... .+...... .+++.|.+++.+++||+|.|.+++||||++||+||++|+++++||+++|
T Consensus 115 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~~~G 190 (539)
T TIGR02456 115 PDGPYRDFYVWSDTDEK----YKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWLDLG 190 (539)
T ss_pred CCCCCCceEEecCCCcc----cccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHHHcC
Confidence 47899999999865321 11111111 2456788999999999999999999999999999999999999999999
Q ss_pred CCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCHH
Q psy15648 84 IDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIE 163 (567)
Q Consensus 84 VDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~~ 163 (567)
|||||||+++++++..... ..+.|+.++||++|++.+++. .|++++|||++....
T Consensus 191 vDGfRlDav~~~~~~~~~~---------------------~~~~p~~~~f~~~~~~~v~~~----~p~~~~iaE~~~~~~ 245 (539)
T TIGR02456 191 VDGFRLDAVPYLYEREGTS---------------------CENLPETHEFLKRLRKMVDRE----YPGRMLLAEANQWPE 245 (539)
T ss_pred CCEEEEecHHhhhccCCCc---------------------cCCCchHHHHHHHHHHHHHHh----CCCeEEEEEeCCCHH
Confidence 9999999999997643311 134567889999999999887 789999999977777
Q ss_pred HHhhhhccCCCCCCCcccccccccCCCCCc---chHHHhhhhhhhHhHHHHHHHhCCCCCCceeeccCCCC---------
Q psy15648 164 NTMKYFKYNGRPAAHYPFNFQLVLDPDKGE---RALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDN--------- 231 (567)
Q Consensus 164 ~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~--------- 231 (567)
.+..|++.....+++++|+|.+...+.... +...+ ...+..+. ..+......+|++|||+
T Consensus 246 ~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l-------~~~l~~~~-~~~~~~~~~~fl~nHD~~~~~~~~~~ 317 (539)
T TIGR02456 246 EVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPI-------IDILKETP-DIPDSCQWCIFLRNHDELTLEMVTDE 317 (539)
T ss_pred HHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHH-------HHHHHHhh-hccCCCceeeecCCCCccCccccChh
Confidence 778887632333799999998865432221 23333 44443322 34444455679999998
Q ss_pred ----------------------CcccccCCch--HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCC
Q psy15648 232 ----------------------PRVTNRLGKE--LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGAR 287 (567)
Q Consensus 232 ----------------------~R~~~~~~~~--~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~ 287 (567)
+|++++++.+ ++++|++++||+||+|+||||||+||.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~---------------- 381 (539)
T TIGR02456 318 ERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNI---------------- 381 (539)
T ss_pred hhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCC----------------
Confidence 3566666543 579999999999999999999999998741
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCCC--CCCCCCC----CCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceE
Q psy15648 288 ADETRDPERTPMQWDSTKHAGFSTAR--KTWLPVN----PNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVS 360 (567)
Q Consensus 288 ~~~~~d~~r~pm~W~~~~~~gf~~~~--~~w~~~~----~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~ 360 (567)
....++.+|+||+|+...++||+++. .+|+|.. .+|..+||++|..++.|++++||+||+||+++ +|+.|++.
T Consensus 382 ~~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~ 461 (539)
T TIGR02456 382 WLGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLT 461 (539)
T ss_pred ccCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceE
Confidence 00125568999999988899999875 3577653 35788999999999999999999999999998 99999999
Q ss_pred EeecCCCcEEEEeccccch
Q psy15648 361 THILNGEWVLGLSRAANML 379 (567)
Q Consensus 361 ~~~~~~~~v~~f~R~~~~~ 379 (567)
.+..++++|++|.|..+++
T Consensus 462 ~l~~~~~~v~~f~R~~~~~ 480 (539)
T TIGR02456 462 FLPTGNRRVLAFLREYEGE 480 (539)
T ss_pred EEecCCCCEEEEEEEcCCc
Confidence 8876456799999988754
No 4
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=7.1e-39 Score=330.27 Aligned_cols=364 Identities=15% Similarity=0.151 Sum_probs=245.4
Q ss_pred CCCCCCCceEEeeeCCCCCCCCCCCCcccccC---CC---cceeeCCccceeeccCCCCCCccCCCCHHHHHHHHHHHHH
Q psy15648 5 AGIAPYDEYYVWKEGKGVNKTEPPNNWVSVFS---GS---AWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRF 78 (567)
Q Consensus 5 ~~~~~~~d~y~w~~~~~~~~~~~p~~w~s~f~---~~---~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~ 78 (567)
.++|||+|||+|.+...+ .+.||++|.+.|+ ++ .|++.+..++||+|.|.+.||||||+||+|+++|.++++|
T Consensus 103 ~~~s~Y~D~fi~~d~~~~-~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~f 181 (495)
T PRK13840 103 GEASEYWPMFLTKDKVFP-DGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDR 181 (495)
T ss_pred CCCCCccCeEEECCCCCc-CCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHH
Confidence 458999999999986432 3457889998885 44 5678888889999999999999999999999999999999
Q ss_pred HHhCCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEec
Q psy15648 79 WLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVES 158 (567)
Q Consensus 79 Wl~~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~ 158 (567)
|+++|||||||||+.++++..+.. +.++|+.++||+++|+.++.+ +..+|+|+
T Consensus 182 wl~~GVDgfRLDAv~~l~K~~gt~---------------------c~~~pe~~~~l~~lr~~~~~~------~~~ll~Ei 234 (495)
T PRK13840 182 FAASHVTLIRLDAAGYAIKKAGTS---------------------CFMIPETFEFIDRLAKEARAR------GMEVLVEI 234 (495)
T ss_pred HHHCCCCEEEEechhhhhcCCCCC---------------------cCCChHHHHHHHHHHHHhhhc------CCEEEEeC
Confidence 999999999999999998865421 346789999999999988765 35688998
Q ss_pred cCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHHhCCCCCCceeeccCCCCCcccccC
Q psy15648 159 YTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRL 238 (567)
Q Consensus 159 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~ 238 (567)
+........+ ..+++++|+|.+...+...+-..+ ...+.+|....|..+ .+||.|||...+...-
T Consensus 235 ~~y~~~~~~~-----~~e~~~vYnF~Lp~ll~~aL~~~~--------~~~L~~~l~~~p~~~--~n~L~~HDgIgl~d~~ 299 (495)
T PRK13840 235 HSYYKTQIEI-----AKKVDRVYDFALPPLILHTLFTGD--------VEALAHWLEIRPRNA--VTVLDTHDGIGIIDVG 299 (495)
T ss_pred ccccCccccc-----cccccEEecchhhHHHHHHHHhCC--------chHHHHHHHhCCCcc--EEeeecCCCCCccccc
Confidence 7533221111 136999999988764332221111 345566666666665 4799999998873320
Q ss_pred CchHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy15648 239 GKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLP 318 (567)
Q Consensus 239 ~~~~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~ 318 (567)
-.+ + |. -|+-..
T Consensus 300 ~~~--~------------~~------~gll~~------------------------------------------------ 311 (495)
T PRK13840 300 ADD--R------------GL------AGLLPD------------------------------------------------ 311 (495)
T ss_pred ccc--c------------cc------ccCCCH------------------------------------------------
Confidence 000 0 00 010000
Q ss_pred CCCCcccccHHHhhhCCCchHHHHHHHHhccccCccccCceEEeecCCCcEEEEeccccc--hhHHHHhhhceeecccCC
Q psy15648 319 VNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHILNGEWVLGLSRAANM--LLTEMKRERAKFEAYDNH 396 (567)
Q Consensus 319 ~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~al~~G~~~~~~~~~~~v~~f~R~~~~--~l~~~~~~~~~v~~l~nH 396 (567)
.+-..+.+.|.+ + .|.. .|...... .+..|.-++.+..++.+.
T Consensus 312 --------------~e~~~l~~~~~~----~------~~~~-----------~~~~~~~~as~~~~Y~in~~~~~Al~~~ 356 (495)
T PRK13840 312 --------------EQIDNLVETIHA----N------SHGE-----------SRQATGAAASNLDLYQVNCTYYDALGRN 356 (495)
T ss_pred --------------HHHHHHHHHHHH----h------ccCc-----------eeecCCcccccccchhhhccHHHHhcCC
Confidence 000112222222 0 0000 01111111 122233344445555555
Q ss_pred CCccccccCCHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCc
Q psy15648 397 DNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGF 476 (567)
Q Consensus 397 D~~R~~~~~~~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f 476 (567)
| +++.++.+++|++||||.||||+|+|..|+..... ..+.+|+.+|..++|+..
T Consensus 357 d----------~r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~-----------~t~~~R~inR~~~~~~~~----- 410 (495)
T PRK13840 357 D----------QDYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLA-----------RTNVGRDINRHYYSTAEI----- 410 (495)
T ss_pred c----------HHHHHHHHHHHcCCCcceeeechhhccCccHHHHH-----------hcCCCcccCCCCCCHHHH-----
Confidence 4 37889999999999999999999999998753221 135789999999998752
Q ss_pred CCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccccCCeeEEEecCCeEEEEEEEcCCCCEEEEEEeCC
Q psy15648 477 STARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFN 556 (567)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~g~~~~~~~~~~~vl~~~R~~~~~~~~~vv~N~~ 556 (567)
+.+. ...+++.+++||++|+++|++.|.++... .++..+++.|.. +.....+.+|+.
T Consensus 411 -------------------~~~l--~~~v~~~l~~li~~R~~~~aF~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 467 (495)
T PRK13840 411 -------------------DEAL--ERPVVKALNALIRFRNEHPAFDGAFSYAA-DGDTSLTLSWTA-GDSSASLTLDFA 467 (495)
T ss_pred -------------------HHHH--HHHHHHHHHHHHHHHhcCcccCceEEEec-CCCCeEEEEEec-CCceEEEEEEcc
Confidence 2222 23499999999999999999988886543 455677888876 566777777877
Q ss_pred CccEEEe
Q psy15648 557 SIIEEVD 563 (567)
Q Consensus 557 ~~~~~~~ 563 (567)
.....+.
T Consensus 468 ~~~~~~~ 474 (495)
T PRK13840 468 PKKGLIT 474 (495)
T ss_pred cceEEEE
Confidence 6654443
No 5
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=7.4e-38 Score=320.79 Aligned_cols=346 Identities=16% Similarity=0.175 Sum_probs=228.2
Q ss_pred CCCCCceEE-----eeeCCCCCCCCCCCCcccccCC------CcceeeCCccceeeccCCCCCCccCCCCHHHHHHHHHH
Q psy15648 7 IAPYDEYYV-----WKEGKGVNKTEPPNNWVSVFSG------SAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAV 75 (567)
Q Consensus 7 ~~~~~d~y~-----w~~~~~~~~~~~p~~w~s~f~~------~~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~ 75 (567)
+|||+|||+ |.++.+. ..++...|.+ +.|++.+..++||+|.|+++||||||.||+|+++|.++
T Consensus 100 ~s~y~d~fi~~~~~w~~~~~~-----~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~i 174 (470)
T TIGR03852 100 NSKYKDLFIRYKDFWPNGRPT-----QEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDN 174 (470)
T ss_pred CCCccceEEecccccCCCCcc-----ccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHH
Confidence 899999999 5543211 1223333321 25788888889999999999999999999999999999
Q ss_pred HHHHHhCCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCC-chhHHHHHHHHHHHHHHHhhhcCCceEE
Q psy15648 76 LRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTD-LPELYEILVKWRALVDEYKQKTGHTRIL 154 (567)
Q Consensus 76 ~~~Wl~~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~~~~~~~~~~~~~~~l 154 (567)
++||+++|||||||||+.+++|..+.. +.+ .|+.|++++++|+++. .++.++
T Consensus 175 l~fwl~~GvdgfRLDAv~~l~K~~Gt~---------------------c~~l~pet~~~l~~~r~~~~------~~~~~l 227 (470)
T TIGR03852 175 LENLAEHGASIIRLDAFAYAVKKLGTN---------------------DFFVEPEIWELLDEVRDILA------PTGAEI 227 (470)
T ss_pred HHHHHHcCCCEEEEecchhhcccCCCC---------------------cccCChhHHHHHHHHHHHhc------cCCCEE
Confidence 999999999999999999998875431 122 3789999999999773 569999
Q ss_pred EEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHHhCCCCCCceeeccCCCCCcc
Q psy15648 155 IVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRV 234 (567)
Q Consensus 155 igE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~ 234 (567)
|+|++... .|.. ..+.+.+|+|+|.+...+..+....+ ...+.+|....|...+ +||+|||.--+
T Consensus 228 l~E~~~~~----~~~~-~~gde~~mvY~F~lppl~l~al~~~~--------~~~l~~wl~~~p~~~~--nfL~sHDgigl 292 (470)
T TIGR03852 228 LPEIHEHY----TIQF-KIAEHGYYVYDFALPMLVLYSLYSGK--------TNRLADWLRKSPMKQF--TTLDTHDGIGV 292 (470)
T ss_pred EeHhhhhc----cccc-ccccceeEEccCccchhhHHHhhccC--------HHHHHHHHHhCcccce--EEeecCCCCCC
Confidence 99995421 2222 11357899999987654332221111 4556777777776554 69999998655
Q ss_pred ccc---CCchHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCC
Q psy15648 235 TNR---LGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFST 311 (567)
Q Consensus 235 ~~~---~~~~~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~ 311 (567)
... +.++...
T Consensus 293 ~~~~glL~~~ei~------------------------------------------------------------------- 305 (470)
T TIGR03852 293 VDVKDLLTDEEID------------------------------------------------------------------- 305 (470)
T ss_pred ccccccCCHHHHH-------------------------------------------------------------------
Confidence 321 1111111
Q ss_pred CCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccCccccCceEEe----ecCCCcEEEEeccccchhHHHHhhh
Q psy15648 312 ARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTH----ILNGEWVLGLSRAANMLLTEMKRER 387 (567)
Q Consensus 312 ~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~al~~G~~~~~----~~~~~~v~~f~R~~~~~l~~~~~~~ 387 (567)
.++..+.+ + .|.++.. ...+.+++..-|.+
T Consensus 306 ----------------------------~l~~~~~~----~---g~~~s~~~~~~~~~~~~~Y~in~t~----------- 339 (470)
T TIGR03852 306 ----------------------------YTSEELYK----V---GANVKKIYSTAAYNNLDIYQINCTY----------- 339 (470)
T ss_pred ----------------------------HHHHHHHh----c---CCCccccccccccCCcCceeeehhh-----------
Confidence 11111100 0 0011100 00012223332222
Q ss_pred ceeecccCCCCccccccCCHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccc
Q psy15648 388 AKFEAYDNHDNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQ 467 (567)
Q Consensus 388 ~~v~~l~nHD~~R~~~~~~~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~ 467 (567)
..+|.+-| +++.+|.+++|++||||.||||+|+||.++.-.. .+.+.+|+.+|.+.
T Consensus 340 --~~aL~~~~----------~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~~-----------~rt~~~R~Inr~~~- 395 (470)
T TIGR03852 340 --YSALGDDD----------QAYLLARAIQFFAPGIPQVYYVGLLAGKNDIELL-----------EETKEGRNINRHYY- 395 (470)
T ss_pred --HHHhCCCH----------HHHHHHHHHHHcCCCCceEEechhhcCCchHHHH-----------HhcCCCCCCCCCCC-
Confidence 11222211 6889999999999999999999999999864211 12234555555544
Q ss_pred cCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc--cCCeeEEEecCCeEEEEEEEcC-
Q psy15648 468 WDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI--YGAVSTHILNGEWVLGLSRSMP- 544 (567)
Q Consensus 468 W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l--~g~~~~~~~~~~~vl~~~R~~~- 544 (567)
++++++++.|.. +++-+.+||++|+++|++ .|... +...++.|+++.|...
T Consensus 396 ---------------------~~~~i~~~l~~~----v~~~L~~li~~R~~~~aF~~~g~~~-~~~~~~~~~~~~r~~~~ 449 (470)
T TIGR03852 396 ---------------------TLEEIAEEVKRP----VVAKLLNLLRFRNTSKAFDLDGSID-IETPSENQIEIVRTNKD 449 (470)
T ss_pred ---------------------CHHHHHHHHhhH----HHHHHHHHHHHHhhCcccCCCCceE-ecCCCCcEEEEEEEcCC
Confidence 344567777766 666666699999999999 45554 4445678999999763
Q ss_pred CCCEEEEEEeCCCccEEE
Q psy15648 545 GNDTYIVLINFNSIIEEV 562 (567)
Q Consensus 545 ~~~~~~vv~N~~~~~~~~ 562 (567)
+++++.+++|++++++.+
T Consensus 450 ~~~~~~~~~n~~~~~~~~ 467 (470)
T TIGR03852 450 GGNKAILTANLKTKTFTI 467 (470)
T ss_pred CCceEEEEEecCCCcEec
Confidence 378999999999998665
No 6
>KOG0471|consensus
Probab=100.00 E-value=1.7e-38 Score=337.23 Aligned_cols=354 Identities=35% Similarity=0.648 Sum_probs=286.4
Q ss_pred CCCCCceEEeeeCCCC--CCCCCCCCcccccCCCcceeeCCccceeeccCCCCCCccCCCCHHHHHHHHHHHH-HHHhCC
Q psy15648 7 IAPYDEYYVWKEGKGV--NKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLR-FWLDKG 83 (567)
Q Consensus 7 ~~~~~d~y~w~~~~~~--~~~~~p~~w~s~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~-~Wl~~G 83 (567)
+..|+|||.|.++... +++.||+||.++|++++|.|++.+++||+|.|...||||||+||+|++.|.++++ +|+++|
T Consensus 127 ~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~~g 206 (545)
T KOG0471|consen 127 KTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLEKG 206 (545)
T ss_pred cccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 4449999999998643 3788999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCeeEecccCccccCC---CCCCCCCCCCCC---CCCCccccccccCCCchhHHHHHHHHHHHHHHHhh-hc-CCceEEE
Q psy15648 84 IDGWRIDALKHMFEAG---DFKDEKYKPGKE---GSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQ-KT-GHTRILI 155 (567)
Q Consensus 84 VDGfRlD~~~~l~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~-~~-~~~~~li 155 (567)
|||||+|+++++.+.. ...++++..... ++..+....+.+..++++.+.+...++..++.+.. .+ ....++.
T Consensus 207 vdGfRiD~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 286 (545)
T KOG0471|consen 207 VDGFRIDAVKGYAGENFKNMWPDEPVFDVGEKLQDDNYVAYQYNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQ 286 (545)
T ss_pred CCeEEEEcccccccccccccccCCCcccceeEecCcchhhcccccccccchhhhhHHHHHHhhhhhhhhcccccchhhhh
Confidence 9999999999997776 556666655433 33444556677778888999999999988877644 21 4455666
Q ss_pred EeccCCHHHHhhhhccCC-CCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHHhCC-CCCCceeeccCCCCCc
Q psy15648 156 VESYTDIENTMKYFKYNG-RPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLP-AEGTSNWVYDNHDNPR 233 (567)
Q Consensus 156 gE~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fl~nHD~~R 233 (567)
.+.....+....|+.+.. ..+.+.++++.....+... .+..+ ...+..+....+ .+.++.|.++|||+.|
T Consensus 287 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~a~W~~~~~~~~r 358 (545)
T KOG0471|consen 287 TEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLT-VASIY-------KEVEVDWLSNHDTENRWAHWVLGNHDQAR 358 (545)
T ss_pred hhhhccHHHHHhhhccCCCCccccccchhhhhhhhhcc-chHHH-------HHHHHHHHhcCCccCCceeeeecCccchh
Confidence 666666666667766433 2334556666555433322 34445 667778887777 5889999999999999
Q ss_pred ccccCCchHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCC
Q psy15648 234 VTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTAR 313 (567)
Q Consensus 234 ~~~~~~~~~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~ 313 (567)
.+++++...+++..++++++||+|++|||+|+||.+...+..+..++..+. .|+||+|+...++||+++.
T Consensus 359 ~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~----------~rt~~~w~~~~~~gfs~~~ 428 (545)
T KOG0471|consen 359 LASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQ----------SRTPMQWDESTNAGFSEAS 428 (545)
T ss_pred hHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhc----------cCCccccccccccCCCCcc
Confidence 999999999999999999999999999999999998743333443333221 2999999988999999777
Q ss_pred CCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEEeecCCCcEEEEeccccch
Q psy15648 314 KTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVSTHILNGEWVLGLSRAANML 379 (567)
Q Consensus 314 ~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~~~~~~~~v~~f~R~~~~~ 379 (567)
++|+++..++..+|+..|..++.+++..++++..||+.+ .+..|....... ++.+++|.|.....
T Consensus 429 ~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~-~~~if~~~r~~~~~ 494 (545)
T KOG0471|consen 429 KTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAA-TPGLFSFSRNWDGN 494 (545)
T ss_pred CcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecC-CCceEEEEeccCCC
Confidence 999999999999999999999999999999999999998 788898887776 88899999987653
No 7
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=3.3e-38 Score=341.03 Aligned_cols=253 Identities=23% Similarity=0.439 Sum_probs=187.7
Q ss_pred CCCCCCceEEeeeCCCCCCCCCCCCcccccCCCcceeeCCccceeeccCCCCCCccCCCCHHHHHHHHH----HHHHHHh
Q psy15648 6 GIAPYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEA----VLRFWLD 81 (567)
Q Consensus 6 ~~~~~~d~y~w~~~~~~~~~~~p~~w~s~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~----~~~~Wl~ 81 (567)
++|||+|||.|.+... ...| . ..+.|||||++||+||++|++ +++||++
T Consensus 272 ~~spy~dwf~~~~~~~------~~~w---------~------------g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~ 324 (598)
T PRK10785 272 PDSPWRDWYSFSDDGR------ALDW---------L------------GYASLPKLDFQSEEVVNEIYRGEDSIVRHWLK 324 (598)
T ss_pred CCCCcceeeEECCCCC------cCCc---------C------------CCCcCccccCCCHHHHHHHHhhhhHHHHHhhc
Confidence 4789999999986421 1112 1 135899999999999999995 8999998
Q ss_pred C--CCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEecc
Q psy15648 82 K--GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESY 159 (567)
Q Consensus 82 ~--GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~ 159 (567)
. ||||||||+|+++.+... ....++||+++++.+++. +|++++|||+|
T Consensus 325 ~~~giDG~RlDva~~v~~~~~--------------------------~~~~~~f~~~~~~~vk~~----~pd~~ligE~~ 374 (598)
T PRK10785 325 APYNIDGWRLDVVHMLGEGGG--------------------------ARNNLQHVAGITQAAKEE----NPEAYVLGEHF 374 (598)
T ss_pred CCCCCcEEEEecHhHhccccC--------------------------ccccHHHHHHHHHHHHhh----CCCeEEEEecc
Confidence 5 999999999998843211 112568999999998887 89999999999
Q ss_pred CCHHHHhhhhccCCCCCCCccccc-----ccccCCC--------CCcchHHHhhhhhhhHhHHHHHHHhCCCCCC--cee
Q psy15648 160 TDIENTMKYFKYNGRPAAHYPFNF-----QLVLDPD--------KGERALVLILNHYMKVKSKNQFKDNLPAEGT--SNW 224 (567)
Q Consensus 160 ~~~~~~~~y~~~~~~~~~~~~~~~-----~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 224 (567)
.+... ++.. ..++.++++ .+...+. ...++..+ ...+......++.... ..+
T Consensus 375 ~~~~~---~l~~---~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~n 441 (598)
T PRK10785 375 GDARQ---WLQA---DVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTC-------AAWMDEYRAGLPHQQQLRQFN 441 (598)
T ss_pred CChhh---hccC---ccccccccchhhhhHHHHHhhccccccCccCCCHHHH-------HHHHHHHHHhCCHHHHHHhhh
Confidence 75432 2221 223333333 1111111 01234455 5555555555554322 346
Q ss_pred eccCCCCCcccccCCch--HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCC-CCCCccc
Q psy15648 225 VYDNHDNPRVTNRLGKE--LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDP-ERTPMQW 301 (567)
Q Consensus 225 fl~nHD~~R~~~~~~~~--~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~-~r~pm~W 301 (567)
||+|||++|++++++++ ++++|+++|||+||+||||||||+||.+. .|+ +|+||+|
T Consensus 442 ~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~---------------------~dp~~R~~m~W 500 (598)
T PRK10785 442 QLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYGDEVGLDGG---------------------NDPFCRKPFPW 500 (598)
T ss_pred ccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEeeeeccccCC---------------------CCCCccCCcCC
Confidence 99999999999998643 67999999999999999999999999987 455 8999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEEeecCCCcEEEEeccccc
Q psy15648 302 DSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVSTHILNGEWVLGLSRAANM 378 (567)
Q Consensus 302 ~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~~~~~~~~v~~f~R~~~~ 378 (567)
+... ...+++++||+|++||+++ +|+.|+++.+.. ++++++|.|..++
T Consensus 501 ~~~~----------------------------~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~-~~~v~af~R~~~~ 549 (598)
T PRK10785 501 DEAK----------------------------QDGALLALYQRMIALRKKSQALRRGGCQVLYA-EGNVVVFARVLQQ 549 (598)
T ss_pred Cccc----------------------------CchHHHHHHHHHHHHHhhCcccccCcEEEEEe-CCCEEEEEEECCC
Confidence 7642 1357999999999999998 999999999877 6789999998754
No 8
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=8.2e-37 Score=328.75 Aligned_cols=253 Identities=19% Similarity=0.201 Sum_probs=173.5
Q ss_pred CccceeeccCCCCCCccCC---CCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccc
Q psy15648 45 NRKMFYLHQFSAKQPDLNF---RSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLI 120 (567)
Q Consensus 45 ~~~~~y~~~f~~~~pdLN~---~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (567)
..+.+|++.|...+||+|+ .||+||++|+++++||++ +||||||||+|+|+ +..||.+.
T Consensus 412 ~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV--~~~FW~~~--------------- 474 (683)
T PRK09505 412 STQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHV--ELPAWQQL--------------- 474 (683)
T ss_pred CccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhC--CHHHHHHH---------------
Confidence 3467899999999999997 789999999999999997 79999999999999 22221000
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhh
Q psy15648 121 HDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLIL 200 (567)
Q Consensus 121 ~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (567)
..++.+.+++|++.... ...++++++||||+|........|+. .++|+++||.+...+... ...+ .
T Consensus 475 ------~~~~~~~l~~~k~~~~d-~~~~~~~~~~vGEvw~~~~~~~~y~~----~~fDsv~NF~~~~~~~~~--~~~~-~ 540 (683)
T PRK09505 475 ------KQEASAALAEWKKANPD-KALDDAPFWMTGEAWGHGVMKSDYYR----HGFDAMINFDYQEQAAKA--VDCL-A 540 (683)
T ss_pred ------HHHHHHHHHHHHHhccc-cccccCCeEEEEEecCCchhhHHHHh----hcCccccCchHHHHHHHH--HHHH-H
Confidence 11122333333322110 00123469999999975444456655 469999999876422110 1111 0
Q ss_pred hhhhhHhHHHHHHHhCCCCCCceeeccCCCCCcccccCCch-HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccC
Q psy15648 201 NHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGKE-LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRD 279 (567)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~-~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d 279 (567)
. ............+. ....+|++|||++|+.++.+.. ++++|++++||+||+|+||||||+||.+...
T Consensus 541 ~---l~~~~~~~~~~~~~-~~~l~FLdNHDt~Rf~s~~~~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~------- 609 (683)
T PRK09505 541 Q---MDPTYQQMAEKLQD-FNVLSYLSSHDTRLFFEGGQSYAKQRRAAELLLLAPGAVQIYYGDESARPFGPT------- 609 (683)
T ss_pred H---HHHHHHHHhhhcCc-cceeecccCCChhhhhhhcCchHHHHHHHHHHHhCCCCcEEEechhhCccCCCC-------
Confidence 0 01111122122221 2233599999999999988654 6899999999999999999999999987520
Q ss_pred ccccCCCCCCCCCC---CCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccc
Q psy15648 280 PNNAGGARADETRD---PERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMI 355 (567)
Q Consensus 280 ~~~~~~~~~~~~~d---~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~ 355 (567)
+.| .+|++|+|++.. .+..+++++||+|++||+++ +|+
T Consensus 610 -----------g~DP~~~~R~~M~W~~~~---------------------------~~~~~Ll~~~kkLi~LRk~~pAL~ 651 (683)
T PRK09505 610 -----------GSDPLQGTRSDMNWQEVS---------------------------GKSAALLAHWQKLGQFRARHPAIG 651 (683)
T ss_pred -----------CCCCcccccccCCccccc---------------------------cchHHHHHHHHHHHHHHhhCHHhh
Confidence 123 379999997531 12457999999999999999 999
Q ss_pred cCceEEeecCCCcEEEEeccccch
Q psy15648 356 YGAVSTHILNGEWVLGLSRAANML 379 (567)
Q Consensus 356 ~G~~~~~~~~~~~v~~f~R~~~~~ 379 (567)
.|+++.+. .+++++|.|..+++
T Consensus 652 ~G~~~~l~--~~~~~aF~R~~~~d 673 (683)
T PRK09505 652 AGKQTTLS--LKQYYAFVREHGDD 673 (683)
T ss_pred CCceEEec--cCCEEEEEEEeCCC
Confidence 99998863 56899999987653
No 9
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1e-33 Score=292.24 Aligned_cols=364 Identities=15% Similarity=0.139 Sum_probs=234.4
Q ss_pred CCCcceee--------CCccceeeccCCCCCCccCCCCHH--HHHHHH-HHHHHHHhCCCCeeEecccCccccCCCCCCC
Q psy15648 36 SGSAWTYD--------ENRKMFYLHQFSAKQPDLNFRSKK--LQEAME-AVLRFWLDKGIDGWRIDALKHMFEAGDFKDE 104 (567)
Q Consensus 36 ~~~~w~~~--------~~~~~~y~~~f~~~~pdLN~~np~--vr~~i~-~~~~~Wl~~GVDGfRlD~~~~l~~~~~~~~~ 104 (567)
..|.|+|+ +.+.+||+|+|.++||||||.||. ||+.|. ++++||+++||||||+||+.+++++....
T Consensus 229 e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~lG~~GfRLDAvpfLg~e~~~~-- 306 (688)
T TIGR02455 229 KDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDCLGARGLRLDANGFLGVERRAE-- 306 (688)
T ss_pred ccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHHhccccceeccccceeeecCCC--
Confidence 35789999 889999999999999999999999 999999 99999999999999999999998765431
Q ss_pred CCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccc
Q psy15648 105 KYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQ 184 (567)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~ 184 (567)
+.+.++.|.+++..|+.+..... +++.++++|....++.+..|++ .++++.|+|.
T Consensus 307 -------------------~~~~~e~h~ll~~~r~~l~~~~r--~~Gg~ll~E~nl~~~d~~~~~g----~~~dl~~dF~ 361 (688)
T TIGR02455 307 -------------------GTAWSEGHPLSLTGNQLIAGAIR--KAGGFSFQELNLTIDDIAAMSH----GGADLSYDFI 361 (688)
T ss_pred -------------------CCCCCccCHHHHHHHHHHHHhhh--cCCeeEeeeccCCHHHHHHHhC----CCcceeeccc
Confidence 12335678899999998773211 6889999999999999999987 3799999998
Q ss_pred cccCCCCCc---chHHHhhhhhhhHhHHHHHHHhCCCCCCceeeccCCCCCcccccCCchHHHHHHHHHHhC-CCceeee
Q psy15648 185 LVLDPDKGE---RALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGKELADAYLMISLLM-PGVGVTY 260 (567)
Q Consensus 185 ~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~~~~a~a~ll~~-pG~P~iY 260 (567)
.+..+..++ ++..+ +..+......--+......||.|||.-.+-- .. +.+. +---+.|
T Consensus 362 t~p~~~~AL~tgda~pL-------r~~L~~~~~~gid~~~~~~~LrNHDELtlel------vh-----~~~~~~~~~~~~ 423 (688)
T TIGR02455 362 TRPAYHHALLTGDTEFL-------RLMLKEMHAFGIDPASLIHALQNHDELTLEL------VH-----FWTLHAHDHYHY 423 (688)
T ss_pred ccHHHHHHHHcCCHHHH-------HHHHHhhhcCCCCchhhhhhccCccccchhh------hh-----hccccccccccc
Confidence 775443222 34444 4455444332213333445999999864310 00 0011 1122445
Q ss_pred ccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchH-
Q psy15648 261 YGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTY- 339 (567)
Q Consensus 261 yG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~- 339 (567)
.|+++ ++.. . ...+.
T Consensus 424 ~g~~~--~g~~---------------------l-----------------------------------------~e~~R~ 439 (688)
T TIGR02455 424 KGQTL--PGGH---------------------L-----------------------------------------REHIRE 439 (688)
T ss_pred ccccC--Cccc---------------------c-----------------------------------------CHHHHH
Confidence 55554 1110 0 00011
Q ss_pred HHHHHHHhccccCccccCceEEeecCCCcEEEEeccccchhHHHHhhhceeecccCCCCccccccC--CHHHHHHHHHHH
Q psy15648 340 KLYRKLSQLRRTDTMIYGAVSTHILNGEWVLGLSRAANMLLTEMKRERAKFEAYDNHDNPRVTNRL--GKELADAYLMIS 417 (567)
Q Consensus 340 ~~~k~Li~lR~~~al~~G~~~~~~~~~~~v~~f~R~~~~~l~~~~~~~~~v~~l~nHD~~R~~~~~--~~~~~~~~~~l~ 417 (567)
..+.++.. + ...+.... +.+.+++..-. ++- .|----|+.-.. ...+++++++|+
T Consensus 440 ~m~~~~a~---d----~~p~~m~~------------~~~gi~~t~a~--~ia--~~~GIRrLap~~~~d~~~I~~~h~LL 496 (688)
T TIGR02455 440 EIYERLSG---E----HAPYNLKF------------VTNGIACTTAS--LIA--AALGIRDLDAIGPADIELIKKLHILL 496 (688)
T ss_pred HHHHHhcC---C----CccccceE------------Eeccccccchh--hhh--hhcCCccchhhCCCCHHHHHHHHHHH
Confidence 11111100 0 00001000 01111000000 000 011111222222 234788999999
Q ss_pred Hh----CCCceeeecc--------------ccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCC
Q psy15648 418 LL----MPGVGVTYYG--------------DEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTA 479 (567)
Q Consensus 418 l~----~pG~P~iy~G--------------~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~ 479 (567)
++ +||+|+|||| +|+||-.. .|- .++||+..
T Consensus 497 ~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~-----------------------------~wl--~rggfs~~ 545 (688)
T TIGR02455 497 VMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDT-----------------------------RWI--HRGGYDLA 545 (688)
T ss_pred HHhhccCCCceEeecccccccccccccchhhhhccCcc-----------------------------ccc--cCCCcccC
Confidence 99 9999999999 88877643 121 14566554
Q ss_pred C----CC----cCCCC-CCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cCCeeEEEecCCeEEEEEEEcC-CCCE
Q psy15648 480 R----KT----WLPVN-PNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSRSMP-GNDT 548 (567)
Q Consensus 480 ~----~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g~~~~~~~~~~~vl~~~R~~~-~~~~ 548 (567)
. +. .+|.. .-|. ||+.|..++.|+++.+++++++||+++.+ .+.+......++.|+++.+... +++.
T Consensus 546 ~~~p~~~~s~~~lP~~~~~Yg--nv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~~l~~~~~~ 623 (688)
T TIGR02455 546 DLAPEAEASAEGLPKARALYG--SLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVHELPAGKGI 623 (688)
T ss_pred CCCchhhhccCCCCCCcCCCC--CHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEEEcCCCCce
Confidence 3 11 33432 2333 99999999999999999999999999988 5556666667889999999863 3478
Q ss_pred EEEEEeCCCccEEEeC
Q psy15648 549 YIVLINFNSIIEEVDL 564 (567)
Q Consensus 549 ~~vv~N~~~~~~~~~l 564 (567)
+++|+|||.+++.+.|
T Consensus 624 ~L~v~Nfs~~~~~~~l 639 (688)
T TIGR02455 624 QITALNFGADAIAEEI 639 (688)
T ss_pred EEEeeccCCCCeeeEE
Confidence 9999999997766544
No 10
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-32 Score=293.82 Aligned_cols=340 Identities=32% Similarity=0.511 Sum_probs=234.5
Q ss_pred CCCCC-ceEEeeeCCCCCCCCCCCCcccccCCCcceeeCCccceeeccCCCCCCccCCCCHHHHHHHHHHHHHHHhCCCC
Q psy15648 7 IAPYD-EYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDKGID 85 (567)
Q Consensus 7 ~~~~~-d~y~w~~~~~~~~~~~p~~w~s~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~~GVD 85 (567)
.++++ +||+|++... ...+|++|.+.|++++|++ +..++||+|.|...|||||+.||+||+++.++++||+++|||
T Consensus 117 ~~~~~~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~~gvD 193 (505)
T COG0366 117 PNPKRSDYYIWRDPDP--DGTPPNNWFSVFGGDAWTW-GNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWLDKGVD 193 (505)
T ss_pred CCcccCCCceEccCcc--cCCCCCcchhhcCCCCCCc-CCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 44676 9999999765 4667899999999999999 778999999999999999999999999999999999999999
Q ss_pred eeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCH-HH
Q psy15648 86 GWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDI-EN 164 (567)
Q Consensus 86 GfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~-~~ 164 (567)
|||+|+++++.+..... + ........+..++.++.....+-.+ ......+++..... ..
T Consensus 194 GfRlDa~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 253 (505)
T COG0366 194 GFRLDAAKHISKDFGLP--P--------------SEENLTFLEEIHEYLREENPDVLIY----GEAITDVGEAPGAVKED 253 (505)
T ss_pred eEEeccHhhhccccCCC--C--------------cccccccHHHHHHHHHHHHHHHHhc----Ccceeeeeccccccchh
Confidence 99999999996654321 0 0000112233333333332222111 24455555554322 12
Q ss_pred HhhhhccCCCCCCCcccccccccCCC---CCcchHHHhhhhhhhHhHHHHHHHhCC-CCCCceeeccCCCCCcccccCCc
Q psy15648 165 TMKYFKYNGRPAAHYPFNFQLVLDPD---KGERALVLILNHYMKVKSKNQFKDNLP-AEGTSNWVYDNHDNPRVTNRLGK 240 (567)
Q Consensus 165 ~~~y~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fl~nHD~~R~~~~~~~ 240 (567)
...+ .......+.+.+++.+...-. .......+ ...+..+..... ...|..+|+.|||++|+.++.+.
T Consensus 254 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~hD~~r~~~~~~~ 325 (505)
T COG0366 254 FADN-TSFTNPELSMLFDFSHVGLDFEALAPLDAEEL-------KEILADWPLAVNLNDGWNNLFLSNHDQPRLLSRFGD 325 (505)
T ss_pred hhhc-cchhhhhHhhccccccccccccccCcccHHHH-------HHHHHHHHhhhccccCchhhhhhhcCccceeeeccC
Confidence 2121 111223455555555443110 11234444 555666665554 35677778999999999999865
Q ss_pred h------HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccC-CCCCCCCCCCC
Q psy15648 241 E------LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWD-STKHAGFSTAR 313 (567)
Q Consensus 241 ~------~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~-~~~~~gf~~~~ 313 (567)
+ .+++++++++++||+|+||||+|+||++.........+... .......+++.+|.||+|+ ...++||+. .
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~g~~~-~ 403 (505)
T COG0366 326 DVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVE-LDSIILLSRDGCRTPMPWDENGLNAGFTG-G 403 (505)
T ss_pred CccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhh-hhhhhhccccCCCCCcCCCCCCCCCCccC-C
Confidence 3 47888899999999999999999999998533222111111 0111233577899999999 677889988 7
Q ss_pred CCCCCCCCCccc-ccHHHhhhC--CCchHHHHHHHHhccccC-c-cccC-ceEEeecCCCcEEEEeccccch
Q psy15648 314 KTWLPVNPNYYY-LNVEAQKKA--DWSTYKLYRKLSQLRRTD-T-MIYG-AVSTHILNGEWVLGLSRAANML 379 (567)
Q Consensus 314 ~~w~~~~~~~~~-~~v~~q~~d--~~sl~~~~k~Li~lR~~~-a-l~~G-~~~~~~~~~~~v~~f~R~~~~~ 379 (567)
.+|+.....+.. ++++.+..+ +.+++.+|++|+++|+.+ + +..| .+.....+...+++|.|....+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 475 (505)
T COG0366 404 KPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGE 475 (505)
T ss_pred CcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCc
Confidence 899998887766 899998887 789999999999998886 4 4556 3444433345799999987664
No 11
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.97 E-value=2.8e-31 Score=268.77 Aligned_cols=213 Identities=33% Similarity=0.611 Sum_probs=161.4
Q ss_pred CCCCCCceEEeeeCCCCCCCCCCCCcccccCCCcceeeCCccceeeccCCCCCCccCCCCHHHHHHHHHHHHHHHhCCCC
Q psy15648 6 GIAPYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDKGID 85 (567)
Q Consensus 6 ~~~~~~d~y~w~~~~~~~~~~~p~~w~s~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~~GVD 85 (567)
.+.++++||+|.+. ...+|++|.+.++++.|.+....+. +.+...+||||++||+||++|+++++||+++|||
T Consensus 91 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~giD 163 (316)
T PF00128_consen 91 FDNPYSDYYYWRDG----EGSPPGNWYSYFGGSNWEYDDWGDE---YQFWSDLPDLNYENPEVREYIIDVLKFWIEEGID 163 (316)
T ss_dssp TTSTTGTTBEEESB----TSTTSSTBBCSTTTSSEESCHHTHC---HSSSTTSEEBETTSHHHHHHHHHHHHHHHHTTES
T ss_pred cccccccceeeccc----ccccccccccccccccccccccccc---cccccccchhhhhhhhhhhhhcccccchhhceEe
Confidence 35679999999876 2456889999889999987654444 6789999999999999999999999999999999
Q ss_pred eeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCHHHH
Q psy15648 86 GWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENT 165 (567)
Q Consensus 86 GfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~ 165 (567)
|||||+|+++ ..++++++++.+++. .++++++||.+......
T Consensus 164 GfR~D~~~~~----------------------------------~~~~~~~~~~~~~~~----~~~~~~i~E~~~~~~~~ 205 (316)
T PF00128_consen 164 GFRLDAAKHI----------------------------------PKEFWKEFRDEVKEE----KPDFFLIGEVWGGDNED 205 (316)
T ss_dssp EEEETTGGGS----------------------------------SHHHHHHHHHHHHHH----HTTSEEEEEESSSSHHH
T ss_pred EEEEcccccc----------------------------------chhhHHHHhhhhhhh----ccccceeeeeccCCccc
Confidence 9999999999 236888898888776 58999999999865432
Q ss_pred hhhhccCCCCCCCcccccccccC--------CCCCcchHHHhhhhhhhHhHHHHHHHhCCCCCCceeeccCCCCCccccc
Q psy15648 166 MKYFKYNGRPAAHYPFNFQLVLD--------PDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNR 237 (567)
Q Consensus 166 ~~y~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~ 237 (567)
...............+++..... .........+ ...+..+....+......+|++|||++|+.++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~ 278 (316)
T PF00128_consen 206 LRQYAYDGYFDLDSVFDFPDYGLRSSFFDFWRHGDGDASDL-------ANWLSSWQSSYPDPYRAVNFLENHDTPRFASR 278 (316)
T ss_dssp HHHHHHHGTTSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHH-------HHHHHHHHHHSTTGGGEEEESSHTTSSTHHHH
T ss_pred cchhhhccccccchhhcccccccccchhhhhccccchhhhh-------hhhhhhhhhhhcccceeeecccccccccchhh
Confidence 22111111112222233322110 0112223444 55666666677766777889999999999999
Q ss_pred CCchH--HHHHHHHHHhCCCceeeeccccccCCCC
Q psy15648 238 LGKEL--ADAYLMISLLMPGVGVTYYGDEIGMEGP 270 (567)
Q Consensus 238 ~~~~~--~~~a~a~ll~~pG~P~iYyG~E~G~~~~ 270 (567)
++... +++|++++||+||+|+||||||+||++.
T Consensus 279 ~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 279 FGNNRDRLKLALAFLLTSPGIPMIYYGDEIGMTGS 313 (316)
T ss_dssp TTTHHHHHHHHHHHHHHSSSEEEEETTGGGTBBTS
T ss_pred hcccchHHHHHHHHHHcCCCccEEEeChhccCCCC
Confidence 98764 8999999999999999999999999987
No 12
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.97 E-value=3e-30 Score=273.81 Aligned_cols=221 Identities=19% Similarity=0.301 Sum_probs=155.5
Q ss_pred eCCccceeeccCCCCCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCcccccc
Q psy15648 43 DENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIH 121 (567)
Q Consensus 43 ~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (567)
+...+.|+++ .+||||++||+|+++|++++++|++ +||||||+|+|+++
T Consensus 189 ~~~~~~~~~~----~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v-------------------------- 238 (479)
T PRK09441 189 DDENGNFDYL----MGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHI-------------------------- 238 (479)
T ss_pred ccccCCcccc----cccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCC--------------------------
Confidence 3344455544 5899999999999999999999998 89999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCH-HHHhhhhccC--CCCCCCcccccccccCCCCCcchHHH
Q psy15648 122 DKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDI-ENTMKYFKYN--GRPAAHYPFNFQLVLDPDKGERALVL 198 (567)
Q Consensus 122 ~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~-~~~~~y~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (567)
..++|++|++.+++. .+++++++||+|... +.+..|.... ....+|+++++.+...+... ...++
T Consensus 239 --------~~~f~~~~~~~~~~~---~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~-~~~~l 306 (479)
T PRK09441 239 --------DAWFIKEWIEHVREV---AGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQG-RDYDM 306 (479)
T ss_pred --------CHHHHHHHHHHHHHh---cCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHHHHHHHhcC-Cccch
Confidence 234777777766554 146899999999744 4445555422 11345655555444333221 11222
Q ss_pred hhhhhhhHhHHHHHHHhCCCCCCceeeccCCCCCcccccCCch---HHHHHHHHHHhCC-CceeeeccccccCCCCCCCC
Q psy15648 199 ILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGKE---LADAYLMISLLMP-GVGVTYYGDEIGMEGPLVRN 274 (567)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~---~~~~a~a~ll~~p-G~P~iYyG~E~G~~~~~~~~ 274 (567)
...+...... .....+.+|++|||++|+.+..+.. ..++|+++|||+| |+|+||||+|+|+.+..
T Consensus 307 -------~~~~~~~~~~-~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~--- 375 (479)
T PRK09441 307 -------RNIFDGTLVE-ADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYY--- 375 (479)
T ss_pred -------HhhhCcchhh-cCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCc---
Confidence 2222211111 1122345699999999998876532 2589999999999 99999999999988751
Q ss_pred CcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccCcc
Q psy15648 275 DERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTM 354 (567)
Q Consensus 275 ~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~al 354 (567)
+ ..++++++++|++||++ +
T Consensus 376 ------------------~-----------------------------------------~~~l~~~i~~Li~lRk~--~ 394 (479)
T PRK09441 376 ------------------I-----------------------------------------DMPFKEKLDKLLLARKN--F 394 (479)
T ss_pred ------------------c-----------------------------------------cchHHHHHHHHHHHHHH--h
Confidence 0 13478999999999997 4
Q ss_pred ccCceEEeecCCCcEEEEeccccc
Q psy15648 355 IYGAVSTHILNGEWVLGLSRAANM 378 (567)
Q Consensus 355 ~~G~~~~~~~~~~~v~~f~R~~~~ 378 (567)
..|+...+.. ++++++|.|..++
T Consensus 395 ~~G~~~~~~~-~~~~~~~~R~~~~ 417 (479)
T PRK09441 395 AYGEQTDYFD-HPNCIGWTRSGDE 417 (479)
T ss_pred CCCCeeEeec-CCCEEEEEEecCC
Confidence 4788887776 7889999998754
No 13
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=99.97 E-value=3.5e-30 Score=275.37 Aligned_cols=175 Identities=31% Similarity=0.492 Sum_probs=147.7
Q ss_pred eeecccCCCCccccccCCHH------HHHHHHHHHHhCCCceeeeccccccCCCCC-CCCCCCCCCCc------------
Q psy15648 389 KFEAYDNHDNPRVTNRLGKE------LADAYLMISLLMPGVGVTYYGDEIGMEGPL-VRNDERRDPNN------------ 449 (567)
Q Consensus 389 ~v~~l~nHD~~R~~~~~~~~------~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~-~~~~~~~dp~~------------ 449 (567)
...+++|||++|+.++++.+ .++++++++||+||+|+||||||+||.+.. ...++++||..
T Consensus 317 ~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~ 396 (551)
T PRK10933 317 NALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGR 396 (551)
T ss_pred eccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCC
Confidence 45678999999999999743 367888899999999999999999999852 12344555431
Q ss_pred ----cCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cC
Q psy15648 450 ----AGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YG 524 (567)
Q Consensus 450 ----~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g 524 (567)
........+|+.+|+||+|+.+.++|||++ .||+|++++|.++||+.|.+++.|++++||+||+|||++|+| .|
T Consensus 397 ~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~-~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G 475 (551)
T PRK10933 397 DADELLAILASKSRDNSRTPMQWDNGDNAGFTQG-EPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWG 475 (551)
T ss_pred CHHHHHhhhhccCCCCCccccccCCCCCCCCCCC-CCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccc
Confidence 111223468999999999999999999998 799999999999999999999999999999999999999999 68
Q ss_pred CeeEEEecCCeEEEEEEEcCCCCEEEEEEeCCCccEEEeCC
Q psy15648 525 AVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLS 565 (567)
Q Consensus 525 ~~~~~~~~~~~vl~~~R~~~~~~~~~vv~N~~~~~~~~~l~ 565 (567)
.+..+...++.|++|.|.. ++++++||+|+++.++.++++
T Consensus 476 ~~~~~~~~~~~v~af~R~~-~~~~~lvv~N~s~~~~~~~~~ 515 (551)
T PRK10933 476 DYQDLLPNHPSLWCYRREW-QGQTLLVIANLSREPQPWQPG 515 (551)
T ss_pred eeEEeccCCCcEEEEEEEc-CCcEEEEEEECCCCCeeeecC
Confidence 8776554556799999998 788999999999999988775
No 14
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=99.97 E-value=5.2e-30 Score=274.57 Aligned_cols=176 Identities=33% Similarity=0.547 Sum_probs=148.5
Q ss_pred eeecccCCCCccccccCCHH------HHHHHHHHHHhCCCceeeeccccccCCCCCC-CCCCCCCCC-------------
Q psy15648 389 KFEAYDNHDNPRVTNRLGKE------LADAYLMISLLMPGVGVTYYGDEIGMEGPLV-RNDERRDPN------------- 448 (567)
Q Consensus 389 ~v~~l~nHD~~R~~~~~~~~------~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~-~~~~~~dp~------------- 448 (567)
.+++++|||++|+.++++.+ +++++++++||+||+|+||||||+||.+... ...++.||.
T Consensus 311 ~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~ 390 (543)
T TIGR02403 311 NALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGK 390 (543)
T ss_pred eeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCC
Confidence 45689999999999999742 5788999999999999999999999998532 122333432
Q ss_pred ---ccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cC
Q psy15648 449 ---NAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YG 524 (567)
Q Consensus 449 ---~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g 524 (567)
.+.......+|+.+|+||+|+.+.++||+++ .||+|++++|..+||+.|.+++.|++++||+||+|||++|+| .|
T Consensus 391 ~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~-~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G 469 (543)
T TIGR02403 391 SEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTG-KPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDG 469 (543)
T ss_pred CHHHHHHhhhccCCCCCccccccCCCCCCCCCCC-CCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCc
Confidence 1222334578999999999999999999985 899999999999999999999999999999999999999999 78
Q ss_pred CeeEEEecCCeEEEEEEEcCCCCEEEEEEeCCCccEEEeCCC
Q psy15648 525 AVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566 (567)
Q Consensus 525 ~~~~~~~~~~~vl~~~R~~~~~~~~~vv~N~~~~~~~~~l~~ 566 (567)
.+..+...++.|++|.|.. ++++++||+|+++++++++|+.
T Consensus 470 ~~~~~~~~~~~v~a~~R~~-~~~~~lVv~N~s~~~~~~~l~~ 510 (543)
T TIGR02403 470 DYQFLLPDDPSVWAYTRTY-KNQKLLVINNFYGEEKTIELPL 510 (543)
T ss_pred cEEEeecCCCcEEEEEEEc-CCcEEEEEEECCCCCeEeeCCc
Confidence 8876665556799999998 7899999999999999888863
No 15
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=99.96 E-value=7.2e-30 Score=272.39 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=106.2
Q ss_pred hhceeecccCCCC-------ccccccCCHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccC
Q psy15648 386 ERAKFEAYDNHDN-------PRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADET 458 (567)
Q Consensus 386 ~~~~v~~l~nHD~-------~R~~~~~~~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~ 458 (567)
+.+++++++|||+ .|+...++..++++|++++||+|||||||||||+|+.+++.+|+++.+++.... .+.+
T Consensus 364 ~~~~vnfl~nHD~~gn~~~~~Rl~~~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~--v~~g 441 (542)
T TIGR02402 364 PHRFVVFIQNHDQIGNRALGERLSQLLSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQA--VREG 441 (542)
T ss_pred HHHEEEEccCcccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHH--HHHh
Confidence 3468999999997 788888888899999999999999999999999999999989998877542100 0111
Q ss_pred CCCCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHh-hcCCCcHHHHHHHHHHHhhcCccc-cCCeeEE---EecC
Q psy15648 459 RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQ-KKADWSTYKLYRKLSQLRRTDTMI-YGAVSTH---ILNG 533 (567)
Q Consensus 459 r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~lRk~~~~l-~g~~~~~---~~~~ 533 (567)
|...-..+.|+.... .......++.. ..++++.. .....+++++||+||+|||++|+| .++...+ ...+
T Consensus 442 r~~e~~~~~~~~~~~-pdp~~~~~~~~-----~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~ 515 (542)
T TIGR02402 442 RKKEFARFGWDPEDV-PDPQDEETFLR-----SKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDED 515 (542)
T ss_pred HHHHHHhcccccccC-CCCCchhhHhh-----ccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCC
Confidence 111111122211000 00000000000 11111111 112456999999999999999998 4443222 2345
Q ss_pred CeEEEEEEEcCCCCEEEEEEeCCCccEEE
Q psy15648 534 EWVLGLSRSMPGNDTYIVLINFNSIIEEV 562 (567)
Q Consensus 534 ~~vl~~~R~~~~~~~~~vv~N~~~~~~~~ 562 (567)
+.|+++. . ++++++|++|+++.++++
T Consensus 516 ~~~~~~~--~-~~~~~~v~~N~~~~~~~~ 541 (542)
T TIGR02402 516 PGWVAVR--F-GRGELVLAANLSTSPVAV 541 (542)
T ss_pred CCEEEEE--E-CCCeEEEEEeCCCCCcCC
Confidence 6787777 3 677899999999987764
No 16
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=99.95 E-value=2.3e-27 Score=257.75 Aligned_cols=233 Identities=14% Similarity=0.086 Sum_probs=157.3
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHH
Q psy15648 58 QPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVK 136 (567)
Q Consensus 58 ~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (567)
-.|+|++||+||++|+++++||++ +||||||||++.++ ..++|++
T Consensus 286 ~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~----------------------------------~~~~~~~ 331 (605)
T TIGR02104 286 GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIH----------------------------------DIETMNE 331 (605)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcC----------------------------------CHHHHHH
Confidence 458999999999999999999997 79999999999888 2358889
Q ss_pred HHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhc----cCCCCCCCcccccccccCCCCCc--------------chHHH
Q psy15648 137 WRALVDEYKQKTGHTRILIVESYTDIENTMKYFK----YNGRPAAHYPFNFQLVLDPDKGE--------------RALVL 198 (567)
Q Consensus 137 ~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~----~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~ 198 (567)
+++.++.. +|+++++||.|........... ......-...||+.+...+.... ....+
T Consensus 332 ~~~~~~~~----~p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l 407 (605)
T TIGR02104 332 IRKALNKI----DPNILLYGEGWDLGTPLPPEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETV 407 (605)
T ss_pred HHHHHHhh----CCCeEEEEccCCCCCCcchhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHH
Confidence 98888877 8999999999874432221100 00000113456666655443211 11112
Q ss_pred hhhhhhhHhHHHHHH------HhCCCCCCceeeccCCCCCcccccCC-----------chHHHHHHHHHHhCCCceeeec
Q psy15648 199 ILNHYMKVKSKNQFK------DNLPAEGTSNWVYDNHDNPRVTNRLG-----------KELADAYLMISLLMPGVGVTYY 261 (567)
Q Consensus 199 ~~~~~~~~~~~~~~~------~~~~~~~~~~~fl~nHD~~R~~~~~~-----------~~~~~~a~a~ll~~pG~P~iYy 261 (567)
...+.... ..........+|++|||+.|+..++. ..+.+++++++||+||+|||||
T Consensus 408 -------~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~ 480 (605)
T TIGR02104 408 -------KKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHA 480 (605)
T ss_pred -------HhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeec
Confidence 11111100 01122234567999999999876642 1258999999999999999999
Q ss_pred cccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHH
Q psy15648 262 GDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKL 341 (567)
Q Consensus 262 G~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~ 341 (567)
|||+|+++... .+.+..+.++.+|+|+... ....++++
T Consensus 481 GdE~g~s~~g~--------------~n~y~~~d~~~~ldW~~~~----------------------------~~~~~~~~ 518 (605)
T TIGR02104 481 GQEFMRTKQGD--------------ENSYNSPDSINQLDWDRKA----------------------------TFKDDVNY 518 (605)
T ss_pred chhhhccCCCC--------------CCCccCCCcccccCccccc----------------------------cchHHHHH
Confidence 99999987520 0112233467789997531 12458999
Q ss_pred HHHHHhccccC-ccccCceEE-------eecCCCcEEEEecccc
Q psy15648 342 YRKLSQLRRTD-TMIYGAVST-------HILNGEWVLGLSRAAN 377 (567)
Q Consensus 342 ~k~Li~lR~~~-al~~G~~~~-------~~~~~~~v~~f~R~~~ 377 (567)
||+||+||+++ +|+.|++.. +...++.|++|.|...
T Consensus 519 ~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~ 562 (605)
T TIGR02104 519 IKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDH 562 (605)
T ss_pred HHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCC
Confidence 99999999999 999887532 2222567999999753
No 17
>PLN00196 alpha-amylase; Provisional
Probab=99.94 E-value=9.9e-26 Score=232.29 Aligned_cols=226 Identities=15% Similarity=0.174 Sum_probs=148.7
Q ss_pred CCCcccccCC-CcceeeCCccceeeccCCCCCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCC
Q psy15648 28 PNNWVSVFSG-SAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEK 105 (567)
Q Consensus 28 p~~w~s~f~~-~~w~~~~~~~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~ 105 (567)
+.+|...+.. ..+.|....+.+..+.+...+||||++||+||++|++++++|++ .||||||+|+|+++.
T Consensus 139 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~--------- 209 (428)
T PLN00196 139 RLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYS--------- 209 (428)
T ss_pred ccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCC---------
Confidence 5567544332 22234444556666777789999999999999999999998875 799999999999991
Q ss_pred CCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCH----------------HHHhhhh
Q psy15648 106 YKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDI----------------ENTMKYF 169 (567)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~----------------~~~~~y~ 169 (567)
.+|+++ .+++. +| .++|||.|.+. ..+..+.
T Consensus 210 -------------------------~~f~~~---~v~~~----~p-~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l 256 (428)
T PLN00196 210 -------------------------AEVAKV---YIDGT----EP-SFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWV 256 (428)
T ss_pred -------------------------HHHHHH---HHHcc----CC-cEEEEEEeccccccccCCccccchhhHHHHHHHH
Confidence 124443 33333 44 88999999752 1223444
Q ss_pred ccCCC-CCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHH------HHHhCCCCCCceeeccCCCCCcccccCC--c
Q psy15648 170 KYNGR-PAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQ------FKDNLPAEGTSNWVYDNHDNPRVTNRLG--K 240 (567)
Q Consensus 170 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~fl~nHD~~R~~~~~~--~ 240 (567)
...+. ....+.|+|.+...+...... +. .+.+.. .....|. ...+|++|||+.|+.+... .
T Consensus 257 ~~~g~~~~~~~~fDF~~~~~~~~~~~~-~~-------~~l~~~~~~~~~~~~~~P~--~aVtFvdNHDT~r~~~~~~~~~ 326 (428)
T PLN00196 257 DRVGGAASPATVFDFTTKGILNVAVEG-EL-------WRLRGADGKAPGVIGWWPA--KAVTFVDNHDTGSTQHMWPFPS 326 (428)
T ss_pred HhcCCccCcceeecccchHHHHHHhcC-Cc-------hhhhhhcccCcchhhcChh--hceeeccCCCCccccccCCCcc
Confidence 32211 112345555543211000000 00 011110 1111222 2446999999999988764 3
Q ss_pred hHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy15648 241 ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVN 320 (567)
Q Consensus 241 ~~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~ 320 (567)
++.++|.|++||+||+||||||+=++ |
T Consensus 327 ~~~~lAyA~iLT~pG~P~IyYg~~~~----------------------------------~------------------- 353 (428)
T PLN00196 327 DKVMQGYAYILTHPGNPCIFYDHFFD----------------------------------W------------------- 353 (428)
T ss_pred chHHHHHHHHHcCCCcceEeeCCCcC----------------------------------c-------------------
Confidence 46799999999999999999995221 1
Q ss_pred CCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEEeecCCCcEEEEecc
Q psy15648 321 PNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVSTHILNGEWVLGLSRA 375 (567)
Q Consensus 321 ~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~~~~~~~~v~~f~R~ 375 (567)
.+.+.+++|+++|+.. ++..|+++.+.. +++++++.|.
T Consensus 354 ----------------~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a-~~d~yv~~~~ 392 (428)
T PLN00196 354 ----------------GLKEEIAALVSIRNRNGITPTSELRIMEA-DADLYLAEID 392 (428)
T ss_pred ----------------cHHHHHHHHHHHHHhCCCcCCccEEEEEe-cCCEEEEEEC
Confidence 1346899999999998 999999999888 7889999994
No 18
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=99.93 E-value=8.8e-26 Score=258.95 Aligned_cols=229 Identities=22% Similarity=0.255 Sum_probs=158.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHH
Q psy15648 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRA 139 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 139 (567)
.+|+++|+|+++|+++++||+++||||||||+|.++.+. ..+|+++++.
T Consensus 312 ~~n~~~p~v~~~i~d~lr~Wv~~gVDGfRfDla~~l~r~-------------------------------~~~f~~~~~~ 360 (1221)
T PRK14510 312 LPNLERPFILRLPMDVLRSWAKRGVDGFRLDLADELARE-------------------------------PDGFIDEFRQ 360 (1221)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEechhhhccC-------------------------------ccchHHHHHH
Confidence 467779999999999999999999999999999999442 1247778888
Q ss_pred HHHHHhhhcCCceEE-----EEeccCCHHHHhhhhccCCCCCCCcccccccccC----CCCCcc-hHHHhhhhhhhHhHH
Q psy15648 140 LVDEYKQKTGHTRIL-----IVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLD----PDKGER-ALVLILNHYMKVKSK 209 (567)
Q Consensus 140 ~~~~~~~~~~~~~~l-----igE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~----l~~~~~-~~~~~~~~~~~~~~~ 209 (567)
.++++ .++.++ |||.|........ . +.-...-..+|+.+... +.+... ..++ ...+
T Consensus 361 ~l~ai----~~d~~l~~~~ligE~Wd~~~~~~~--~-g~f~~~~~~~N~~frd~vr~f~~g~~~~~~~~-------a~~l 426 (1221)
T PRK14510 361 FLKAM----DQDPVLRRLKMIAEVWDDGLGGYQ--Y-GKFPQYWGEWNDPLRDIMRRFWLGDIGMAGEL-------ATRL 426 (1221)
T ss_pred HHHHh----CCCcCcccCcEEEecccCCCCccc--c-CCCCcceeeeccHHHHHHHHHhcCCCchHHHH-------HHHH
Confidence 88777 566655 9999974322111 0 00000113355554432 222222 4445 5555
Q ss_pred HHHHHhCCC----CCCceeeccCCCCCcccccCC----------------------------------------chHHHH
Q psy15648 210 NQFKDNLPA----EGTSNWVYDNHDNPRVTNRLG----------------------------------------KELADA 245 (567)
Q Consensus 210 ~~~~~~~~~----~~~~~~fl~nHD~~R~~~~~~----------------------------------------~~~~~~ 245 (567)
......++. .....+|++|||+.|+.+.+. ..++|+
T Consensus 427 ~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~ 506 (1221)
T PRK14510 427 AGSADIFPHRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRL 506 (1221)
T ss_pred hCcHhhcCccCCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHH
Confidence 544444442 234567999999999887654 114789
Q ss_pred HHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCccc
Q psy15648 246 YLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYY 325 (567)
Q Consensus 246 a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~ 325 (567)
+++++||+|||||||||||+|.++.. +.+.++.+.+|.+|+|+..
T Consensus 507 a~~~l~~s~GiP~Iy~GdE~g~tq~G--------------n~n~y~~~~~r~~~~W~~~--------------------- 551 (1221)
T PRK14510 507 LLLTLMSFPGVPMLYYGDEAGRSQNG--------------NNNGYAQDNNRGTYPWGNE--------------------- 551 (1221)
T ss_pred HHHHHHhCCCCcEEecchhcccccCC--------------CCCCCCCCCccccCCcccc---------------------
Confidence 99999999999999999999977651 1233445668999999753
Q ss_pred ccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEEeec----CCCcEEEEecccc
Q psy15648 326 LNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVSTHIL----NGEWVLGLSRAAN 377 (567)
Q Consensus 326 ~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~~~~----~~~~v~~f~R~~~ 377 (567)
...++++||+||+||+++ +|+.|.+..... ..++|..|.|...
T Consensus 552 ---------~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~ 599 (1221)
T PRK14510 552 ---------DEELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGE 599 (1221)
T ss_pred ---------cHHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCC
Confidence 246999999999999999 999998876532 1356888877653
No 19
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.93 E-value=5.9e-26 Score=246.51 Aligned_cols=253 Identities=15% Similarity=0.153 Sum_probs=160.5
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCcccc-CCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHH
Q psy15648 57 KQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFE-AGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEIL 134 (567)
Q Consensus 57 ~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (567)
+.++||++||+||++|+++++||++ +||||||||++.++.- +.. .......|+.+ ......+.++||
T Consensus 261 ~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~-----~~~~~~~~~~~------~~~~~~~~~~fl 329 (613)
T TIGR01515 261 GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYS-----RDEGEWSPNED------GGRENLEAVDFL 329 (613)
T ss_pred CCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccc-----ccccccccccc------CCcCChHHHHHH
Confidence 4689999999999999999999998 6999999999876631 100 00000001100 011234578899
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHH
Q psy15648 135 VKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKD 214 (567)
Q Consensus 135 ~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (567)
+++++.+++. .|++++|||.+.....+..... .++.+++..+++.+++.+........+ .+.+...........
T Consensus 330 ~~~~~~v~~~----~p~~~liaE~~~~~~~~~~~~~-~gg~gfd~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 403 (613)
T TIGR01515 330 RKLNQTVYEA----FPGVVTIAEESTEWPGVTRPTD-EGGLGFHYKWNMGWMHDTLDYMSTDPV-ERQYHHQLITFSMLY 403 (613)
T ss_pred HHHHHHHHHH----CCCeEEEEEeCCCCcccccccc-CCcCCcCeeeCchHHHHHHHHHhhChh-hHhhccccccHHHHH
Confidence 9999999988 8999999998765444433222 234567888777665422110000001 000000000000111
Q ss_pred hCCCCCCceeeccCCCC-----CcccccCCc------hHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCcccc
Q psy15648 215 NLPAEGTSNWVYDNHDN-----PRVTNRLGK------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNA 283 (567)
Q Consensus 215 ~~~~~~~~~~fl~nHD~-----~R~~~~~~~------~~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~ 283 (567)
.+.+. ..+++|||+ +|++.++.+ .++|++++++||+||+||||||+|+|+.+..
T Consensus 404 ~~~e~---~~~~~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~------------ 468 (613)
T TIGR01515 404 AFSEN---FVLPLSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEW------------ 468 (613)
T ss_pred Hhhhc---cccCCCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCC------------
Confidence 11111 126789998 677777754 2679999999999999999999999997652
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCce---
Q psy15648 284 GGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAV--- 359 (567)
Q Consensus 284 ~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~--- 359 (567)
..+.+|+|+.... .....++++||+|++||+++ +|..|++
T Consensus 469 ----------~~~~~l~W~~~~~--------------------------~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~ 512 (613)
T TIGR01515 469 ----------NDTEQLDWHLLSF--------------------------PMHQGVSVFVRDLNRTYQKSKALYEHDFDPQ 512 (613)
T ss_pred ----------CCCccCCCccccC--------------------------cccHHHHHHHHHHHHHHhhCHHhhccCCCCC
Confidence 1235788864210 01356899999999999998 9976544
Q ss_pred --EEeec--CCCcEEEEecccc
Q psy15648 360 --STHIL--NGEWVLGLSRAAN 377 (567)
Q Consensus 360 --~~~~~--~~~~v~~f~R~~~ 377 (567)
+++.. .+++|++|.|...
T Consensus 513 ~~~~~~~~~~~~~vlaf~R~~~ 534 (613)
T TIGR01515 513 GFEWIDVDDDEQSVFSFIRRAK 534 (613)
T ss_pred ceEEEEcccCCCCEEEEEEecC
Confidence 44543 2467999999874
No 20
>PRK12313 glycogen branching enzyme; Provisional
Probab=99.93 E-value=1.7e-25 Score=244.75 Aligned_cols=251 Identities=16% Similarity=0.192 Sum_probs=158.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccc-cCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHH
Q psy15648 57 KQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMF-EAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEIL 134 (567)
Q Consensus 57 ~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (567)
+.++||+.||+||++|+++++||++ +||||||||++.++. .+....++ ..|+.++ ...+. +.++||
T Consensus 275 ~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~------~~~~~~~-----~~~~~-~~~~fl 342 (633)
T PRK12313 275 GALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGE------WTPNKYG-----GRENL-EAIYFL 342 (633)
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccC------cCCcccC-----CCCCc-HHHHHH
Confidence 3579999999999999999999998 599999999997553 32210000 0011000 01122 568999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHH
Q psy15648 135 VKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKD 214 (567)
Q Consensus 135 ~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (567)
+++++.+++. .|++++|||.+.....+..... .++.++++.++..+++.+........+ ...+...........
T Consensus 343 ~~~~~~v~~~----~p~~~liaE~~~~~~~~~~~~~-~gg~gfd~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 416 (633)
T PRK12313 343 QKLNEVVYLE----HPDVLMIAEESTAWPKVTGPVE-VGGLGFDYKWNMGWMNDTLRYFEEDPI-YRKYHHNLLTFSFMY 416 (633)
T ss_pred HHHHHHHHHH----CCCeEEEEECCCCCcccccccc-CCCCCcCceeCcHHHHHHHHHhhhCcc-ccccccccchHHHhh
Confidence 9999999887 7999999998765444332211 233456767665544321100000000 000000000000111
Q ss_pred hCCCCCCceeeccCCCC-----CcccccCCch------HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCcccc
Q psy15648 215 NLPAEGTSNWVYDNHDN-----PRVTNRLGKE------LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNA 283 (567)
Q Consensus 215 ~~~~~~~~~~fl~nHD~-----~R~~~~~~~~------~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~ 283 (567)
.+.+ ..+++.|||+ .|++.++.++ ++|++++++||+||+||||||+|+|+.+..
T Consensus 417 ~~~e---~~~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~------------ 481 (633)
T PRK12313 417 AFSE---NFVLPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEW------------ 481 (633)
T ss_pred hhhc---ccccCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccC------------
Confidence 1111 1136789998 5888887543 578999999999999999999999998752
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccC-----
Q psy15648 284 GGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYG----- 357 (567)
Q Consensus 284 ~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G----- 357 (567)
..+.+|+|+.... .....++++||+|++||+++ +|+.|
T Consensus 482 ----------~~~~~l~W~~~~~--------------------------~~~~~l~~~~r~Li~LRr~~paL~~~d~~~~ 525 (633)
T PRK12313 482 ----------KHDESLEWHLLED--------------------------PMNAGMQRFTSDLNQLYKDEPALWELDFSPD 525 (633)
T ss_pred ----------CccCCCCccccCC--------------------------hhHHHHHHHHHHHHHHHHhChHhhcccCCCC
Confidence 1236788975311 01246899999999999998 99754
Q ss_pred ceEEeecC--CCcEEEEeccc
Q psy15648 358 AVSTHILN--GEWVLGLSRAA 376 (567)
Q Consensus 358 ~~~~~~~~--~~~v~~f~R~~ 376 (567)
.+..+..+ .++|++|.|..
T Consensus 526 ~~~~l~~~~~~~~vlaf~R~~ 546 (633)
T PRK12313 526 GFEWIDADDADQSVLSFIRKG 546 (633)
T ss_pred CcEEEECcCCCCCEEEEEEeC
Confidence 46666542 35699999986
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=99.92 E-value=6.4e-25 Score=236.02 Aligned_cols=150 Identities=29% Similarity=0.476 Sum_probs=123.8
Q ss_pred ccccccCC--HHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCc
Q psy15648 399 PRVTNRLG--KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGF 476 (567)
Q Consensus 399 ~R~~~~~~--~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f 476 (567)
.|+.+.++ ..++++|++++||+||+|+||||||+||.+... ...++.+|.||+|+...++||
T Consensus 340 ~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~----------------~~~~~~~R~pm~W~~~~~~gf 403 (539)
T TIGR02456 340 RRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIW----------------LGDRNGVRTPMQWSPDRNAGF 403 (539)
T ss_pred hhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCc----------------cCCCcCccCCcCcCCCCCCCC
Confidence 35555554 246899999999999999999999999987421 112445899999999889999
Q ss_pred CCCC--CCcCCCC----CCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cCCeeEEEecCCeEEEEEEEcCCCCEE
Q psy15648 477 STAR--KTWLPVN----PNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSRSMPGNDTY 549 (567)
Q Consensus 477 ~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g~~~~~~~~~~~vl~~~R~~~~~~~~ 549 (567)
+++. .+|+|.. .++...||++|.+++.|++++||+||+|||++|+| .|.+..+...++.|++|.|.. +++++
T Consensus 404 s~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~~~~~~v~~f~R~~-~~~~v 482 (539)
T TIGR02456 404 SSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLPTGNRRVLAFLREY-EGERV 482 (539)
T ss_pred CCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEecCCCCEEEEEEEc-CCcEE
Confidence 9975 4566653 35888999999999999999999999999999999 787776665556799999998 78999
Q ss_pred EEEEeCCCccEEEeCC
Q psy15648 550 IVLINFNSIIEEVDLS 565 (567)
Q Consensus 550 ~vv~N~~~~~~~~~l~ 565 (567)
+||+|+++++++++|+
T Consensus 483 lVv~N~s~~~~~v~l~ 498 (539)
T TIGR02456 483 LCVFNFSRNPQAVELD 498 (539)
T ss_pred EEEEeCCCCCEEeecc
Confidence 9999999998888764
No 22
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.92 E-value=7.1e-25 Score=242.48 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=157.1
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCcccc-CCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHH
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFE-AGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVK 136 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (567)
.+||++||+||++|+++++||++ +||||||||++.++.. +... ..+...|+.++ ....++.++||++
T Consensus 372 ~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~-----~~g~~~~~~~~------~~~~~~~~~fl~~ 440 (726)
T PRK05402 372 LIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSR-----KEGEWIPNIYG------GRENLEAIDFLRE 440 (726)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccc-----ccccccccccc------CcCCHHHHHHHHH
Confidence 47899999999999999999998 6999999999876631 1110 00000111110 1122467899999
Q ss_pred HHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHHhC
Q psy15648 137 WRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNL 216 (567)
Q Consensus 137 ~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (567)
+++.+++. .|++++|||.+.....+..... .++.++++.+++.+++.+........+ ................+
T Consensus 441 ~~~~~~~~----~p~~~liaE~~~~~~~~~~~~~-~~G~gfd~~wn~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 514 (726)
T PRK05402 441 LNAVVHEE----FPGALTIAEESTAWPGVTRPTE-EGGLGFGYKWNMGWMHDTLDYMERDPI-YRKYHHNELTFSLLYAY 514 (726)
T ss_pred HHHHHHHH----CCCeEEEEECCCCCcCcccccc-CCCCCCCceecCCcchHHHHHHhhCcc-cccccccchhHHHhHhh
Confidence 99999888 8999999997654333222111 223457777776554321100000000 00000000000111111
Q ss_pred CCCCCceeeccCCCCC-----cccccCCch------HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCC
Q psy15648 217 PAEGTSNWVYDNHDNP-----RVTNRLGKE------LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 285 (567)
Q Consensus 217 ~~~~~~~~fl~nHD~~-----R~~~~~~~~------~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~ 285 (567)
.+. .++++|||+. |++.++.++ ++|++++++||+||+||||||+|+|+.+..
T Consensus 515 ~e~---~~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~-------------- 577 (726)
T PRK05402 515 SEN---FVLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREW-------------- 577 (726)
T ss_pred hcc---ccCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCC--------------
Confidence 111 2367899985 566666543 578999999999999999999999999862
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCc-----e
Q psy15648 286 ARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGA-----V 359 (567)
Q Consensus 286 ~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~-----~ 359 (567)
+ .+.+|+|+.... .....++++||+|++||+++ +|+.|+ +
T Consensus 578 -------~-~~~~l~W~~~~~--------------------------~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~ 623 (726)
T PRK05402 578 -------N-HDASLDWHLLDF--------------------------PWHRGVQRLVRDLNHLYRAEPALHELDFDPEGF 623 (726)
T ss_pred -------C-ccCcCCccccCC--------------------------cchHHHHHHHHHHHHHHHhChhhhccccCcCCe
Confidence 2 357899975311 01246899999999999998 998664 4
Q ss_pred EEeecC--CCcEEEEecccc
Q psy15648 360 STHILN--GEWVLGLSRAAN 377 (567)
Q Consensus 360 ~~~~~~--~~~v~~f~R~~~ 377 (567)
.++..+ .++|++|.|..+
T Consensus 624 ~~~~~~~~~~~vlaf~R~~~ 643 (726)
T PRK05402 624 EWIDADDAENSVLSFLRRGK 643 (726)
T ss_pred eEEecccCCCCEEEEEEecC
Confidence 444432 457999999865
No 23
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.92 E-value=1.1e-24 Score=235.04 Aligned_cols=250 Identities=16% Similarity=0.144 Sum_probs=160.7
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHH
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKW 137 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (567)
..+|+.+|+||++|+++++||++ +||||||+|++.+|.-- ++.. . ...|+.++ .....+.+.||+++
T Consensus 274 ~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~-d~~~---~--~~~~~~~g------g~~n~~a~~fl~~l 341 (639)
T PRK14706 274 YIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYL-DFSR---T--EWVPNIHG------GRENLEAIAFLKRL 341 (639)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeec-ccCc---c--cccccccC------CcccHHHHHHHHHH
Confidence 35899999999999999999997 79999999998887210 1110 0 00111111 11234678999999
Q ss_pred HHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHHhCC
Q psy15648 138 RALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLP 217 (567)
Q Consensus 138 r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (567)
++.+++. .|++++|||.+.+...+..-.. .+.++|+.++..+++.+........+ .+.+. ...+. ....+
T Consensus 342 n~~v~~~----~p~~~~iAE~~~~~~~v~~~~~--~G~gFD~~w~~~w~~~~l~~~~~~~~-~r~~~-~~~lt-~~~~y- 411 (639)
T PRK14706 342 NEVTHHM----APGCMMIAEESTSFPGVTVPTP--YGLGFDYKWAMGWMNDTLAYFEQDPL-WRKYH-HHKLT-FFNVY- 411 (639)
T ss_pred HHHHHHh----CCCeEEEEECCCCCcCcccccC--CCCccccEeccHHHHHHHHHhccCch-hhhhc-hhccc-hhhhh-
Confidence 9999988 8999999999876555443222 24678888887766532110000001 00000 00000 00000
Q ss_pred CCCCceeeccCCCCCcccc-----cCCc------hHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCC
Q psy15648 218 AEGTSNWVYDNHDNPRVTN-----RLGK------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGA 286 (567)
Q Consensus 218 ~~~~~~~fl~nHD~~R~~~-----~~~~------~~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~ 286 (567)
......++++|||+.|... ++.+ ..+|+++++|+|+||+|+||||+|+|+.+.
T Consensus 412 ~~~e~~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~e---------------- 475 (639)
T PRK14706 412 RTSENYVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTE---------------- 475 (639)
T ss_pred hccccEecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCC----------------
Confidence 0111223789999988643 2322 257899999999999999999999997543
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCc-----eE
Q psy15648 287 RADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGA-----VS 360 (567)
Q Consensus 287 ~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~-----~~ 360 (567)
..++.+|+|+.... .....+++++|+|++||+++ +|..|+ ++
T Consensus 476 ------w~~~~~l~W~l~~~--------------------------~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~ 523 (639)
T PRK14706 476 ------WNHDASLPWYLTDV--------------------------PDHRGVMNLVRRLNQLYRERPDWHRGDKREEGLY 523 (639)
T ss_pred ------CCcccCCCCcccCC--------------------------HHHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeE
Confidence 23677889975421 01135899999999999999 998776 44
Q ss_pred EeecC--CCcEEEEeccccc
Q psy15648 361 THILN--GEWVLGLSRAANM 378 (567)
Q Consensus 361 ~~~~~--~~~v~~f~R~~~~ 378 (567)
++..+ +++|++|.|..++
T Consensus 524 wi~~~d~~~~VlaF~R~~~~ 543 (639)
T PRK14706 524 WVSADDTDNSVYAYVRRDSE 543 (639)
T ss_pred EEEeecCCCCEEEEEEecCC
Confidence 44332 4679999998754
No 24
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=99.92 E-value=1.1e-24 Score=237.32 Aligned_cols=228 Identities=17% Similarity=0.138 Sum_probs=149.4
Q ss_pred eccCCCCCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchh
Q psy15648 51 LHQFSAKQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPE 129 (567)
Q Consensus 51 ~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (567)
++.+....++||++||+||++|+++++||++ +||||||+|++..|.+...- ...
T Consensus 301 ~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~-------------------------~~~ 355 (688)
T TIGR02100 301 YINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYG-------------------------FDM 355 (688)
T ss_pred ecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCC-------------------------Ccc
Confidence 3456778899999999999999999999996 79999999999999442110 011
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCC----C-CcchHHHhhhhhh
Q psy15648 130 LYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPD----K-GERALVLILNHYM 204 (567)
Q Consensus 130 ~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~----~-~~~~~~~~~~~~~ 204 (567)
.+.|++++++. .. .+++++|||.|..... .|.. ..-...-..||..++..+. + .....++
T Consensus 356 ~~~~~~~i~~d--~~----~~~~~ligE~W~~~~~--~~~~-~~~~~~~~~~Nd~frd~ir~f~~g~~~~~~~~------ 420 (688)
T TIGR02100 356 LSGFFTAIRQD--PV----LAQVKLIAEPWDIGPG--GYQV-GNFPPGWAEWNDRYRDDMRRFWRGDAGMIGEL------ 420 (688)
T ss_pred cHHHHHHHHhC--cc----cCCeEEEEeeecCCCC--cccc-cCCCCceEEecHHHHHHHHHHHcCCCCcHHHH------
Confidence 34566666541 22 6789999999964311 1110 0000011234444443221 1 1123344
Q ss_pred hHhHHHHHHHhCC----CCCCceeeccCCCCCcccccCC----------------------------------------c
Q psy15648 205 KVKSKNQFKDNLP----AEGTSNWVYDNHDNPRVTNRLG----------------------------------------K 240 (567)
Q Consensus 205 ~~~~~~~~~~~~~----~~~~~~~fl~nHD~~R~~~~~~----------------------------------------~ 240 (567)
...+......+. ......+|+++||+.++..++. .
T Consensus 421 -~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~ 499 (688)
T TIGR02100 421 -ANRLTGSSDLFEHNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRR 499 (688)
T ss_pred -HHHHhCCHhhccccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHH
Confidence 444433222221 2234567999999988765420 1
Q ss_pred hHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy15648 241 ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVN 320 (567)
Q Consensus 241 ~~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~ 320 (567)
.++|++++++||+||+||||||||+|+++.. ..+.++++.....|+|+...
T Consensus 500 ~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G--------------~~n~y~~~~~~~~~dW~~~~--------------- 550 (688)
T TIGR02100 500 RQQRNLLATLLLSQGTPMLLAGDEFGRTQQG--------------NNNAYCQDNEIGWVDWSLDE--------------- 550 (688)
T ss_pred HHHHHHHHHHHHcCCCceeeecHhhccCCCC--------------CCCCccCCCcccccCccccc---------------
Confidence 2478999999999999999999999999641 12334456666789997531
Q ss_pred CCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEE
Q psy15648 321 PNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVST 361 (567)
Q Consensus 321 ~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~ 361 (567)
....++.+||+||+|||++ +|+.+.+..
T Consensus 551 -------------~~~~l~~~~k~Li~lRk~~~~l~~~~~~~ 579 (688)
T TIGR02100 551 -------------GDDELLAFTKKLIALRKAHPVLRRERFFD 579 (688)
T ss_pred -------------ccHHHHHHHHHHHHHHHhCchhccccccc
Confidence 1356999999999999999 999887654
No 25
>PLN02361 alpha-amylase
Probab=99.92 E-value=2e-24 Score=219.76 Aligned_cols=198 Identities=12% Similarity=0.119 Sum_probs=133.3
Q ss_pred cCCCCCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHH
Q psy15648 53 QFSAKQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELY 131 (567)
Q Consensus 53 ~f~~~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (567)
.+..++||||++||+||++|++++++|++ .||||||+|+|+++ ..
T Consensus 141 ~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~----------------------------------~~ 186 (401)
T PLN02361 141 DNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGY----------------------------------SA 186 (401)
T ss_pred CCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccC----------------------------------CH
Confidence 35668999999999999999999986665 79999999999999 23
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeccCCH-----------------HHHhhhhccCCCCCCCcccccccccCCCCCcc
Q psy15648 132 EILVKWRALVDEYKQKTGHTRILIVESYTDI-----------------ENTMKYFKYNGRPAAHYPFNFQLVLDPDKGER 194 (567)
Q Consensus 132 ~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~-----------------~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (567)
+|++++.+ +. + +.++|||.|.+. ..+..|+.. ..+...+|+|.+...+....
T Consensus 187 ~f~~~~~~---~~----~-p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~--~~~~~~~fDF~l~~~l~~a~- 255 (401)
T PLN02361 187 KFVKEYIE---AA----K-PLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDG--TGGLSAAFDFTTKGILQEAV- 255 (401)
T ss_pred HHHHHHHH---hh----C-CeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHh--cCCcceeecHHHHHHHHHHH-
Confidence 46666643 22 3 489999999752 123344432 12344566665544332222
Q ss_pred hHHHhhhhhhhHhHHHHHHHhCC-----CCCCceeeccCCCCCcccccCCc--hHHHHHHHHHHhCCCceeeeccccccC
Q psy15648 195 ALVLILNHYMKVKSKNQFKDNLP-----AEGTSNWVYDNHDNPRVTNRLGK--ELADAYLMISLLMPGVGVTYYGDEIGM 267 (567)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~fl~nHD~~R~~~~~~~--~~~~~a~a~ll~~pG~P~iYyG~E~G~ 267 (567)
..++ .+.... ....+ .....+.|++|||++|+.+.... ++.++|+|++||.||+||||||+=++
T Consensus 256 ~~~~-------~~l~~~-~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~~~- 326 (401)
T PLN02361 256 KGQW-------WRLRDA-QGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHFYD- 326 (401)
T ss_pred hhhH-------HHHhhh-hcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeeccccC-
Confidence 1111 111111 00000 01224459999999999876543 46788999999999999999987211
Q ss_pred CCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHh
Q psy15648 268 EGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQ 347 (567)
Q Consensus 268 ~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~ 347 (567)
|+ .++.+.+++|++
T Consensus 327 ---------------------------------~~---------------------------------~~~~~~I~~Li~ 340 (401)
T PLN02361 327 ---------------------------------WG---------------------------------GSIHDQIVKLID 340 (401)
T ss_pred ---------------------------------CC---------------------------------hHHHHHHHHHHH
Confidence 11 236789999999
Q ss_pred ccccC-ccccCceEEeecCCCcEEE
Q psy15648 348 LRRTD-TMIYGAVSTHILNGEWVLG 371 (567)
Q Consensus 348 lR~~~-al~~G~~~~~~~~~~~v~~ 371 (567)
|||.+ +++.|+++.+.. ++++++
T Consensus 341 lRk~~~~~~~s~~~i~~a-~~~~y~ 364 (401)
T PLN02361 341 IRKRQDIHSRSSIRILEA-QSNLYS 364 (401)
T ss_pred HHHhCCCCCCCcEEEEEe-cCCeEE
Confidence 99999 999999999887 454444
No 26
>PRK03705 glycogen debranching enzyme; Provisional
Probab=99.91 E-value=3.3e-24 Score=231.71 Aligned_cols=220 Identities=16% Similarity=0.162 Sum_probs=142.9
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHH
Q psy15648 54 FSAKQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYE 132 (567)
Q Consensus 54 f~~~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (567)
+....++||++||+||++|+++++||++ +||||||+|+|.+|.+++.++ ....
T Consensus 299 ~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~--------------------------~~~~ 352 (658)
T PRK03705 299 WTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFR--------------------------QDAP 352 (658)
T ss_pred CCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccc--------------------------hhhH
Confidence 4556789999999999999999999998 699999999999996543332 0122
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCC-----CCcchHHHhhhhhhhHh
Q psy15648 133 ILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPD-----KGERALVLILNHYMKVK 207 (567)
Q Consensus 133 ~l~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~ 207 (567)
+++++++ +.+ .+++.++||.|......... + .-...-..||..++..+. ......++ ..
T Consensus 353 ~~~ai~~--d~v----l~~~~ligE~Wd~~~~~~~~-g--~~~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~-------~~ 416 (658)
T PRK03705 353 LFTAIQN--DPV----LSQVKLIAEPWDIGPGGYQV-G--NFPPPFAEWNDHFRDAARRFWLHGDLPLGEF-------AG 416 (658)
T ss_pred HHHHHhh--Ccc----ccceEEEEecccCCCChhhh-c--CCCcceEEEchHHHHHHHHHHccCCCcHHHH-------HH
Confidence 4444432 122 56899999999742211110 1 001011234444433221 11223333 33
Q ss_pred HHHHHHHhCC----CCCCceeeccCCCCCcccccCC----------------------------------------chHH
Q psy15648 208 SKNQFKDNLP----AEGTSNWVYDNHDNPRVTNRLG----------------------------------------KELA 243 (567)
Q Consensus 208 ~~~~~~~~~~----~~~~~~~fl~nHD~~R~~~~~~----------------------------------------~~~~ 243 (567)
.+......++ ......+|+++||+-++..++. .++.
T Consensus 417 ~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~ 496 (658)
T PRK03705 417 RFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASI 496 (658)
T ss_pred HHhcchhhccccCCCCCeEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHH
Confidence 3333222121 2334667999999987766330 0146
Q ss_pred HHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCc
Q psy15648 244 DAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNY 323 (567)
Q Consensus 244 ~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~ 323 (567)
|+++++||+++|+||||+|||+|+++.. ..+.++++.....|+|+..
T Consensus 497 r~~~a~l~~sqG~P~i~~GdE~grtq~G--------------~nN~y~~~~~i~~~dW~~~------------------- 543 (658)
T PRK03705 497 HALLTTLLLSQGTPMLLAGDEHGHSQHG--------------NNNAYCQDNALTWLDWSQA------------------- 543 (658)
T ss_pred HHHHHHHHHcCCchHHHhhHHhccCCCC--------------CCCCccCCCCccccccchh-------------------
Confidence 8899999999999999999999999541 1233445556677888743
Q ss_pred ccccHHHhhhCCCchHHHHHHHHhccccC-ccccCce
Q psy15648 324 YYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAV 359 (567)
Q Consensus 324 ~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~ 359 (567)
..++++++|+||+|||++ +|+..++
T Consensus 544 -----------~~~l~~f~k~Li~lRk~~~~l~~~~~ 569 (658)
T PRK03705 544 -----------DRGLTAFTAALIHLRQRIPALTQNRW 569 (658)
T ss_pred -----------hhHHHHHHHHHHHHHHhChhhccccc
Confidence 246999999999999999 9987765
No 27
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.90 E-value=5e-23 Score=221.43 Aligned_cols=252 Identities=14% Similarity=0.125 Sum_probs=164.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHH
Q psy15648 60 DLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWR 138 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 138 (567)
++|+.+|+||++|+++++||++ +||||||+||+.+|.- .|..+..+...|+.++ .....+.++||++++
T Consensus 377 ~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly----~d~~r~~g~w~pn~~g------g~en~ea~~Fl~~ln 446 (730)
T PRK12568 377 IYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLY----RDYGRAEGEWVPNAHG------GRENLEAVAFLRQLN 446 (730)
T ss_pred ecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhh----hccccccccccccccC------CccChHHHHHHHHHH
Confidence 6899999999999999999997 6999999999877631 1111111122222211 011235788999999
Q ss_pred HHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHHhCCC
Q psy15648 139 ALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPA 218 (567)
Q Consensus 139 ~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (567)
+.+++. .|++++|||.++..+.+..-.. .++.++++.+++..++....-.....+ .+.+.+..........+.+
T Consensus 447 ~~v~~~----~P~~~~IAEest~~p~vt~p~~-~gGlGFd~kwn~gwm~d~l~y~~~dp~-~r~~~h~~ltf~~~y~~~e 520 (730)
T PRK12568 447 REIASQ----FPGVLTIAEESTAWPGVTAPIS-DGGLGFTHKWNMGWMHDTLHYMQRDPA-ERAHHHSQLTFGLVYAFSE 520 (730)
T ss_pred HHHHHH----CCCeEEEEEcCCCCcccccccc-CCCCCcCcEeCChhHHHHHHHHhhCch-hhhhhhhhhhhhhhhhhhc
Confidence 999888 8999999998775555544322 344678999888877643211111111 0111111111122222222
Q ss_pred CCCceeeccCCCC-----CcccccCCch------HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCC
Q psy15648 219 EGTSNWVYDNHDN-----PRVTNRLGKE------LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGAR 287 (567)
Q Consensus 219 ~~~~~~fl~nHD~-----~R~~~~~~~~------~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~ 287 (567)
. .++..|||. .+++.++.++ .+|+++++|+|.||.|+||+|+|+|.....
T Consensus 521 ~---fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew---------------- 581 (730)
T PRK12568 521 R---FVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADW---------------- 581 (730)
T ss_pred c---EeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccc----------------
Confidence 1 235689998 5677776443 479999999999999999999999987652
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccC-----ceEE
Q psy15648 288 ADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYG-----AVST 361 (567)
Q Consensus 288 ~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G-----~~~~ 361 (567)
....+++|..... .....+..+||.|++||+++ ||..+ .+++
T Consensus 582 ------~~~~~ldW~ll~~--------------------------~~h~~~~~~~~dLn~ly~~~paL~~~d~~~~gf~w 629 (730)
T PRK12568 582 ------NHDQSLDWHLLDG--------------------------ARHRGMQQLVGDLNAALRRTPALYRGTHRADGFDW 629 (730)
T ss_pred ------cCCCCccccccCC--------------------------hhHHHHHHHHHHHHHHHHhChhhhcccCCCCCeEE
Confidence 1234677765321 01245889999999999998 99655 3555
Q ss_pred eecC--CCcEEEEeccccc
Q psy15648 362 HILN--GEWVLGLSRAANM 378 (567)
Q Consensus 362 ~~~~--~~~v~~f~R~~~~ 378 (567)
+..+ +.+|++|.|...+
T Consensus 630 i~~~d~~~sv~af~R~~~~ 648 (730)
T PRK12568 630 SVADDARNSVLAFIRHDPD 648 (730)
T ss_pred EeCCCCCCcEEEEEEecCC
Confidence 5543 4579999998753
No 28
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.87 E-value=2.6e-21 Score=218.16 Aligned_cols=253 Identities=17% Similarity=0.197 Sum_probs=164.1
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHH
Q psy15648 58 QPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVK 136 (567)
Q Consensus 58 ~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (567)
...+|+.+++||++|+++++||++ +||||||+|++.+|. +.|..+..+...|+.++ .....+.++||++
T Consensus 871 ~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~ml----y~Dysr~~g~w~pn~~g------g~en~~ai~fl~~ 940 (1224)
T PRK14705 871 TLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASML----YLDYSREEGQWRPNRFG------GRENLEAISFLQE 940 (1224)
T ss_pred CceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhh----hcccccccccccccccC------CccChHHHHHHHH
Confidence 357999999999999999999998 599999999998772 11112222222233222 1122467899999
Q ss_pred HHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHHhC
Q psy15648 137 WRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNL 216 (567)
Q Consensus 137 ~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (567)
+++.+++. .|++++|||.++....+..-.. .++.++++.+|..+++....-.....+ .+.+.+..........+
T Consensus 941 ln~~v~~~----~p~~~~IAEest~~p~vt~p~~-~GGlGFd~kWnmgwmhd~l~Y~~~dp~-~r~~~~~~ltf~~~ya~ 1014 (1224)
T PRK14705 941 VNATVYKT----HPGAVMIAEESTAFPGVTAPTS-HGGLGFGLKWNMGWMHDSLKYASEDPI-NRKWHHGTITFSLVYAF 1014 (1224)
T ss_pred HHHHHHHH----CCCeEEEEEcCCCCcCcccccc-CCCccCCcEecchhhHHHHHHhhhCcc-hhhcccchHHHHHHHHh
Confidence 99988887 7999999999987666654333 445788998888877632111100000 01111111112222223
Q ss_pred CCCCCceeeccCCCCC-----cccccCCch------HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCC
Q psy15648 217 PAEGTSNWVYDNHDNP-----RVTNRLGKE------LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 285 (567)
Q Consensus 217 ~~~~~~~~fl~nHD~~-----R~~~~~~~~------~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~ 285 (567)
.+. ..+..|||.. .+..++.++ .+|+++++++++||+|+||||+|+|.....
T Consensus 1015 ~e~---fvl~~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew-------------- 1077 (1224)
T PRK14705 1015 TEN---FLLPISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEW-------------- 1077 (1224)
T ss_pred hcC---EecccccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCc--------------
Confidence 332 1234589974 334555443 468999999999999999999999988652
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccC-----ce
Q psy15648 286 ARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYG-----AV 359 (567)
Q Consensus 286 ~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G-----~~ 359 (567)
.....++|..... .....+..++|.|++||+++ +|..+ .+
T Consensus 1078 --------~~~~~LdW~ll~~--------------------------~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf 1123 (1224)
T PRK14705 1078 --------SEQHGLDWFLADI--------------------------PAHRGIQLLTKDLNELYTSTPALYQRDNEPGGF 1123 (1224)
T ss_pred --------cccccCCCcccCC--------------------------hhhHHHHHHHHHHHHHHhcChhhhccCCCCCce
Confidence 1234577764311 01245788999999999998 99644 35
Q ss_pred EEeecC--CCcEEEEecccc
Q psy15648 360 STHILN--GEWVLGLSRAAN 377 (567)
Q Consensus 360 ~~~~~~--~~~v~~f~R~~~ 377 (567)
+++..+ +++|++|.|..+
T Consensus 1124 ~wi~~~d~~~~vlaf~R~~~ 1143 (1224)
T PRK14705 1124 QWINGGDADRNVLSFIRWDG 1143 (1224)
T ss_pred EEeecCCCCCcEEEEEEeCC
Confidence 565432 467999999864
No 29
>PRK10785 maltodextrin glucosidase; Provisional
Probab=99.86 E-value=1.6e-21 Score=211.31 Aligned_cols=126 Identities=32% Similarity=0.526 Sum_probs=107.2
Q ss_pred eeecccCCCCccccccCC--HHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCccc
Q psy15648 389 KFEAYDNHDNPRVTNRLG--KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPM 466 (567)
Q Consensus 389 ~v~~l~nHD~~R~~~~~~--~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~ 466 (567)
.+++++|||++|+.+.++ ..++++|++++||+||+||||||||+||.+. .||. +|.+|
T Consensus 439 ~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~-------~dp~-------------~R~~m 498 (598)
T PRK10785 439 QFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYGDEVGLDGG-------NDPF-------------CRKPF 498 (598)
T ss_pred hhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEeeeeccccCC-------CCCC-------------ccCCc
Confidence 568899999999999875 3478999999999999999999999999986 5776 89999
Q ss_pred ccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cCCeeEEEecCCeEEEEEEEcCC
Q psy15648 467 QWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSRSMPG 545 (567)
Q Consensus 467 ~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g~~~~~~~~~~~vl~~~R~~~~ 545 (567)
+|+.... ..+++++||+|++|||++|+| .|.+..+.. ++.|++|.|.. +
T Consensus 499 ~W~~~~~----------------------------~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~-~~~v~af~R~~-~ 548 (598)
T PRK10785 499 PWDEAKQ----------------------------DGALLALYQRMIALRKKSQALRRGGCQVLYA-EGNVVVFARVL-Q 548 (598)
T ss_pred CCCcccC----------------------------chHHHHHHHHHHHHHhhCcccccCcEEEEEe-CCCEEEEEEEC-C
Confidence 9976321 356999999999999999999 677766554 46799999988 7
Q ss_pred CCEEEEEEeCCCccEEEeCC
Q psy15648 546 NDTYIVLINFNSIIEEVDLS 565 (567)
Q Consensus 546 ~~~~~vv~N~~~~~~~~~l~ 565 (567)
+++++|++|++ ..+++.|+
T Consensus 549 ~~~vlVviN~s-~~~~v~lp 567 (598)
T PRK10785 549 QQRVLVAINRG-EACEVVLP 567 (598)
T ss_pred CCEEEEEEECC-CCeEEecc
Confidence 89999999999 66777665
No 30
>PLN02960 alpha-amylase
Probab=99.83 E-value=2.9e-20 Score=200.24 Aligned_cols=261 Identities=14% Similarity=0.122 Sum_probs=148.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccc-cCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHH
Q psy15648 57 KQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMF-EAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEIL 134 (567)
Q Consensus 57 ~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (567)
+.+.+|+.+++||++|+++++|||+ +||||||+||+..|. .+.++...+ ..+.+....+ ...+...||
T Consensus 522 G~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~--------G~~~~~~n~~--~d~~Ai~fL 591 (897)
T PLN02960 522 GTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFT--------GDLDEYCNQY--VDRDALIYL 591 (897)
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccC--------CcccccCCcc--CCchHHHHH
Confidence 3467999999999999999999997 699999999997752 221110000 0000010001 123577899
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHH
Q psy15648 135 VKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKD 214 (567)
Q Consensus 135 ~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (567)
+++++.+... .|++++|||.......+..-.. .++.++|.-+++..+..+...+.. ... +.+.+. .+.....
T Consensus 592 ~~lN~~v~~~----~P~vilIAEdss~~P~vt~P~~-~GGLGFDYkwnmG~~~d~l~~l~~-~~~-r~~~~~-~l~~s~~ 663 (897)
T PLN02960 592 ILANEMLHQL----HPNIITIAEDATFYPGLCEPTS-QGGLGFDYYVNLSPSEMWLSLLEN-VPD-QEWSMS-KIVSTLV 663 (897)
T ss_pred HHHHHHHHhh----CCCeEEEEECCCCCCCccccCC-CCCCCcccccCCCcHHHHHHHHHh-CcC-CCCChh-ccEeeec
Confidence 9999988877 8999999999887666655333 345667766666543211000000 000 000000 0000000
Q ss_pred -hCCCCCCceeeccCCCC-----CcccccCCch--------H---H------HH--HHHHHHhCCCceeeeccccccCCC
Q psy15648 215 -NLPAEGTSNWVYDNHDN-----PRVTNRLGKE--------L---A------DA--YLMISLLMPGVGVTYYGDEIGMEG 269 (567)
Q Consensus 215 -~~~~~~~~~~fl~nHD~-----~R~~~~~~~~--------~---~------~~--a~a~ll~~pG~P~iYyG~E~G~~~ 269 (567)
..........|++|||+ .++..++... + . ++ ++++++ .||+|++|||+|+|...
T Consensus 664 ~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~-~Pg~pLlFMG~EFGh~e 742 (897)
T PLN02960 664 KNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTL-GGSAYLNFMGNEFGHPE 742 (897)
T ss_pred cCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHh-CCCCCEeeCccccCChh
Confidence 00011112459999999 4445544322 0 1 11 234444 48999999999999632
Q ss_pred CCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhcc
Q psy15648 270 PLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLR 349 (567)
Q Consensus 270 ~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR 349 (567)
. .+..||... ..-.+..++|+.... .....++.++|.|++||
T Consensus 743 ~----~~~PdP~n~--------~tf~~s~LdW~Ll~~--------------------------~~h~~l~~f~rdL~~Lr 784 (897)
T PLN02960 743 R----VEFPRASNN--------FSFSLANRRWDLLED--------------------------GVHAHLFSFDKALMALD 784 (897)
T ss_pred h----hhCcCCCCc--------cccccccCCcccccC--------------------------hhHHHHHHHHHHHHHHH
Confidence 1 111121100 001234566764311 11346899999999999
Q ss_pred ccC-ccccCceEEeecC-CCcEEEEec
Q psy15648 350 RTD-TMIYGAVSTHILN-GEWVLGLSR 374 (567)
Q Consensus 350 ~~~-al~~G~~~~~~~~-~~~v~~f~R 374 (567)
+++ +|..|.......+ +.+|++|.|
T Consensus 785 ~~~paL~~g~~~i~~~d~~~~Viaf~R 811 (897)
T PLN02960 785 EKYLILSRGLPNIHHVNDTSMVISFTR 811 (897)
T ss_pred hcChhhcCCcceeeeecCCCCEEEEEe
Confidence 998 9987755544332 567999999
No 31
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=99.82 E-value=9e-20 Score=204.62 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=109.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHH
Q psy15648 58 QPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVK 136 (567)
Q Consensus 58 ~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (567)
..++|.++|+||++|+++++||++ +||||||||++.++ ..++++.
T Consensus 609 g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~----------------------------------d~~~~~~ 654 (1111)
T TIGR02102 609 GGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDH----------------------------------DAASIEI 654 (1111)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccC----------------------------------CHHHHHH
Confidence 357999999999999999999997 79999999999876 1246677
Q ss_pred HHHHHHHHhhhcCCceEEEEeccCCHH---H--HhhhhccC-CCCCCCcccccccccCCCCCcch---HHHhhhhh-hhH
Q psy15648 137 WRALVDEYKQKTGHTRILIVESYTDIE---N--TMKYFKYN-GRPAAHYPFNFQLVLDPDKGERA---LVLILNHY-MKV 206 (567)
Q Consensus 137 ~r~~~~~~~~~~~~~~~ligE~~~~~~---~--~~~y~~~~-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~-~~~ 206 (567)
++..+++. +|+++|+||.|.... . ........ ........|+..++..+.+.... ..++.... ...
T Consensus 655 ~~~~l~~~----dP~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~ 730 (1111)
T TIGR02102 655 AYKEAKAI----NPNIIMIGEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQ 730 (1111)
T ss_pred HHHHHHHh----CcCEEEEEecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHH
Confidence 77777777 789999999996411 0 00000000 00111345555555444321100 00100000 001
Q ss_pred hHHHHHH---HhC--CCCCCceeeccCCCCCcccccCC----------c------hHHHHHHHHHHhCCCceeeeccccc
Q psy15648 207 KSKNQFK---DNL--PAEGTSNWVYDNHDNPRVTNRLG----------K------ELADAYLMISLLMPGVGVTYYGDEI 265 (567)
Q Consensus 207 ~~~~~~~---~~~--~~~~~~~~fl~nHD~~R~~~~~~----------~------~~~~~a~a~ll~~pG~P~iYyG~E~ 265 (567)
....... ..+ .......+|+++||+.++..++. . .+.|++++++||++|+||||+|||+
T Consensus 731 ~l~~~i~g~~~~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf 810 (1111)
T TIGR02102 731 GIFKNIKAQPHNFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEY 810 (1111)
T ss_pred HHHHhhcCCccccccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhh
Confidence 1111111 111 12334567999999999855441 1 1578899999999999999999999
Q ss_pred cCCCCC
Q psy15648 266 GMEGPL 271 (567)
Q Consensus 266 G~~~~~ 271 (567)
+.+...
T Consensus 811 ~RTK~g 816 (1111)
T TIGR02102 811 GRTKQF 816 (1111)
T ss_pred hcccCC
Confidence 988764
No 32
>PLN02784 alpha-amylase
Probab=99.82 E-value=1.3e-19 Score=194.43 Aligned_cols=166 Identities=11% Similarity=0.165 Sum_probs=102.6
Q ss_pred cceeeccCCCCCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCC
Q psy15648 47 KMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTT 125 (567)
Q Consensus 47 ~~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (567)
+.+|.+..+..+||||+.||+||++|++++++|++ .||||||||+|+++..
T Consensus 629 G~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~---------------------------- 680 (894)
T PLN02784 629 GNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWG---------------------------- 680 (894)
T ss_pred CCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCH----------------------------
Confidence 44555555678999999999999999999998885 7999999999998821
Q ss_pred CchhHHHHHHHHHHHHHHHhhhcCCceEEEEeccCCH---------------HHHhhhhccCCCCCCCcccccccccCCC
Q psy15648 126 DLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDI---------------ENTMKYFKYNGRPAAHYPFNFQLVLDPD 190 (567)
Q Consensus 126 ~~~~~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~---------------~~~~~y~~~~~~~~~~~~~~~~~~~~l~ 190 (567)
.|++++ +++. + +.++|||.|+.. ..+..|+... .+...+|+|.+...+.
T Consensus 681 ------~Fvkey---v~a~----k-p~F~VGEyWd~~~~~~g~~~Ynqd~~rq~l~dwi~~t--gg~~saFDfplk~~L~ 744 (894)
T PLN02784 681 ------GYVKDY---MEAS----E-PYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINAT--NGTAGAFDVTTKGILH 744 (894)
T ss_pred ------HHHHHH---Hhcc----C-CcEEEEEeccccccccCccccCchhHHHHHHHHHHhC--CCceeeechhHHHHHH
Confidence 233333 3332 3 489999999762 2344555422 1223344444332221
Q ss_pred CCcchHHHhhhhhhhHhHHHHHHHhCCC------CCCceeeccCCCCCcccccC--CchHHHHHHHHHHhCCCceeeecc
Q psy15648 191 KGERALVLILNHYMKVKSKNQFKDNLPA------EGTSNWVYDNHDNPRVTNRL--GKELADAYLMISLLMPGVGVTYYG 262 (567)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~fl~nHD~~R~~~~~--~~~~~~~a~a~ll~~pG~P~iYyG 262 (567)
......++ .+ +... ...+. ......|++|||+.+..... ...+..+++|++||.||+||||||
T Consensus 745 ~A~~~~e~-------wr-L~d~-~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~PcVFy~ 815 (894)
T PLN02784 745 SALERCEY-------WR-LSDQ-KGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTPAVFYD 815 (894)
T ss_pred HHHhccch-------hh-hhhc-cCCCCCeeccccCceEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCCcceEEeh
Confidence 11111011 00 1100 00011 12234599999998865432 233567799999999999999998
Q ss_pred ccc
Q psy15648 263 DEI 265 (567)
Q Consensus 263 ~E~ 265 (567)
+=+
T Consensus 816 h~y 818 (894)
T PLN02784 816 HIF 818 (894)
T ss_pred hhh
Confidence 855
No 33
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=99.82 E-value=4.1e-19 Score=195.65 Aligned_cols=164 Identities=12% Similarity=0.129 Sum_probs=100.6
Q ss_pred HhhhceeecccCCCCccccccCC---------HH---HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccC
Q psy15648 384 KRERAKFEAYDNHDNPRVTNRLG---------KE---LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451 (567)
Q Consensus 384 ~~~~~~v~~l~nHD~~R~~~~~~---------~~---~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~ 451 (567)
..+.+.|++++.||+.++...+. .+ ..++++++++|+.|||+|++|+|+.-+... ..+.|+.|+
T Consensus 646 ~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~-~~nSY~sgD--- 721 (898)
T TIGR02103 646 ADPTETINYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSF-DRDSYDSGD--- 721 (898)
T ss_pred cCHHHheeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCC-CCCCCcCch---
Confidence 46788999999999988866442 11 356899999999999999999999765432 123344444
Q ss_pred CCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCCCcccc-------cHHHhhcCCCcHHHHHHHHHHHhhcCcccc-
Q psy15648 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYL-------NVEAQKKADWSTYKLYRKLSQLRRTDTMIY- 523 (567)
Q Consensus 452 ~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~- 523 (567)
.-..++|+...+ +|..+-.|-..--.+|..+ ++.-...+-....++||.||+|||++|+|+
T Consensus 722 ----------~~N~vdw~~~~~-~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl 790 (898)
T TIGR02103 722 ----------WFNRVDFSGQDN-NWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRL 790 (898)
T ss_pred ----------hhheeccccccc-ccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCC
Confidence 235567765332 2222210100000112211 111111122448999999999999999983
Q ss_pred CC-------eeEEEecC---CeEEEEEEEcCC----------CCEEEEEEeCCCccEEE
Q psy15648 524 GA-------VSTHILNG---EWVLGLSRSMPG----------NDTYIVLINFNSIIEEV 562 (567)
Q Consensus 524 g~-------~~~~~~~~---~~vl~~~R~~~~----------~~~~~vv~N~~~~~~~~ 562 (567)
+. ..++.... +.|++|.-.... -+.++||+|.+.+++++
T Consensus 791 ~t~~~I~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~~~~ 849 (898)
T TIGR02103 791 DTAAEVMKRVDFRNTGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPEEVTL 849 (898)
T ss_pred CCHHHHHhheEEeccCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCccEEE
Confidence 21 22222211 589999875411 24699999999998886
No 34
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.78 E-value=9.2e-19 Score=189.82 Aligned_cols=139 Identities=17% Similarity=0.181 Sum_probs=99.8
Q ss_pred eeecccCCCCccccccCCHH----------HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccC
Q psy15648 389 KFEAYDNHDNPRVTNRLGKE----------LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADET 458 (567)
Q Consensus 389 ~v~~l~nHD~~R~~~~~~~~----------~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~ 458 (567)
+.+.|++||+.|+.+.+... ..+...++.||+||||+||||+|+++.+- .||+
T Consensus 616 v~~lLds~dt~rfL~~~~~~~~~i~~~G~~nsLsq~lLklT~PGvPdIYqGtE~wd~sl-------vDPD---------- 678 (825)
T TIGR02401 616 VDAVLDPPAGSLFLTDFVAREKKLIPAGLQNSLSQTLLKLTAPGVPDIYQGTEFWDLSL-------VDPD---------- 678 (825)
T ss_pred HHHHcCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCcccccccccccCC-------CCCC----------
Confidence 55678899999987765432 46677888999999999999999999885 6998
Q ss_pred CCCCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc--cCCeeEEEec---C
Q psy15648 459 RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI--YGAVSTHILN---G 533 (567)
Q Consensus 459 r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l--~g~~~~~~~~---~ 533 (567)
||+||+|+..... ...-.... .. .+...-.+....+.++++|++|||++|++ .|++..+... .
T Consensus 679 ---NRRpvd~~~r~~~-L~~l~~~~------~~--~l~~~~~dg~~Kl~~i~~lL~lRr~~p~lF~~G~y~pL~~~G~~~ 746 (825)
T TIGR02401 679 ---NRRPVDYAARRAA-LLQLTTPN------WS--ELELWLLDGLVKLAVTAAALQLRREHPELFGQGDYQPLEAGGPGA 746 (825)
T ss_pred ---ccCCCChHHHHHH-HHhhhccc------ch--hhhccccccHHHHHHHHHHHHHHHhCHHhhhcCCeEEEeccCCCc
Confidence 9999999752210 00000000 00 00111123455889999999999999975 6888777654 3
Q ss_pred CeEEEEEEEcCCCCEEEEEEeCCC
Q psy15648 534 EWVLGLSRSMPGNDTYIVLINFNS 557 (567)
Q Consensus 534 ~~vl~~~R~~~~~~~~~vv~N~~~ 557 (567)
+.|++|.|.. +++.++||+|...
T Consensus 747 ~~vvaFaR~~-~~~~~vvvv~R~~ 769 (825)
T TIGR02401 747 AHVIAFARGT-DRQAAIVVVTRLS 769 (825)
T ss_pred CcEEEEEEec-CCcEEEEEEecch
Confidence 6799999988 7789999998754
No 35
>PRK09505 malS alpha-amylase; Reviewed
Probab=99.77 E-value=8e-19 Score=189.87 Aligned_cols=122 Identities=22% Similarity=0.260 Sum_probs=98.3
Q ss_pred eeecccCCCCccccccCCH-HHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccc
Q psy15648 389 KFEAYDNHDNPRVTNRLGK-ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQ 467 (567)
Q Consensus 389 ~v~~l~nHD~~R~~~~~~~-~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~ 467 (567)
.+++++|||++|+.+..+. .++++|++++||+||+|+||||||+||.+... ..||. ..+|++|+
T Consensus 558 ~l~FLdNHDt~Rf~s~~~~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~----g~DP~-----------~~~R~~M~ 622 (683)
T PRK09505 558 VLSYLSSHDTRLFFEGGQSYAKQRRAAELLLLAPGAVQIYYGDESARPFGPT----GSDPL-----------QGTRSDMN 622 (683)
T ss_pred eeecccCCChhhhhhhcCchHHHHHHHHHHHhCCCCcEEEechhhCccCCCC----CCCCc-----------ccccccCC
Confidence 5679999999999888754 47899999999999999999999999987521 13553 13799999
Q ss_pred cCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cCCeeEEEecCCeEEEEEEEcCCC
Q psy15648 468 WDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSRSMPGN 546 (567)
Q Consensus 468 W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g~~~~~~~~~~~vl~~~R~~~~~ 546 (567)
|+... .+..+++++||+|++|||++|+| .|.+..+ ..+.+++|.|.. ++
T Consensus 623 W~~~~---------------------------~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l--~~~~~~aF~R~~-~~ 672 (683)
T PRK09505 623 WQEVS---------------------------GKSAALLAHWQKLGQFRARHPAIGAGKQTTL--SLKQYYAFVREH-GD 672 (683)
T ss_pred ccccc---------------------------cchHHHHHHHHHHHHHHhhCHHhhCCceEEe--ccCCEEEEEEEe-CC
Confidence 97521 11446999999999999999999 6776554 346799999998 78
Q ss_pred CEEEEEEeC
Q psy15648 547 DTYIVLINF 555 (567)
Q Consensus 547 ~~~~vv~N~ 555 (567)
++++||+|-
T Consensus 673 d~vlVv~~~ 681 (683)
T PRK09505 673 DKVMVVWAG 681 (683)
T ss_pred CEEEEEEeC
Confidence 999999984
No 36
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.77 E-value=6.1e-18 Score=185.83 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=104.2
Q ss_pred hhhceeecccCCCCccccccCC--------H----HHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCC
Q psy15648 385 RERAKFEAYDNHDNPRVTNRLG--------K----ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 452 (567)
Q Consensus 385 ~~~~~v~~l~nHD~~R~~~~~~--------~----~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~ 452 (567)
.+.+.||+++.||+.++...+. . ...++++++++|+.|||+|++|+|+.-+... .-+.|+.|+
T Consensus 716 ~P~q~InYvs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~-d~nSYnSgD---- 790 (970)
T PLN02877 716 SPTETINYVSAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSL-DRDSYNSGD---- 790 (970)
T ss_pred CHHHheeeeeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCC-CCCCCcCch----
Confidence 5888999999999988866541 1 1467899999999999999999999765432 123344444
Q ss_pred CCCccCCCCCCcccccCCCCCCCcCCCCCCc-CCCCCCcccc-------cHHHhhcCCCcHHHHHHHHHHHhhcCcccc-
Q psy15648 453 ARADETRDPERTPMQWDSTKHAGFSTARKTW-LPVNPNYYYL-------NVEAQKKADWSTYKLYRKLSQLRRTDTMIY- 523 (567)
Q Consensus 453 ~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~- 523 (567)
.-..++|+... .+|..+ .|- .....+|..+ +..-..++-....++||.||+|||++|+|+
T Consensus 791 ---------~~N~lDw~~~~-nn~~~G-lP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl 859 (970)
T PLN02877 791 ---------WFNRLDFSYDS-NNWGVG-LPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRL 859 (970)
T ss_pred ---------hhheecccccc-CccccC-CChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCC
Confidence 23557887533 234333 110 0000011111 111111222347899999999999999983
Q ss_pred CC-------eeEEEec---CCeEEEEEEEcCC------------CCEEEEEEeCCCccEEEeCCC
Q psy15648 524 GA-------VSTHILN---GEWVLGLSRSMPG------------NDTYIVLINFNSIIEEVDLSV 566 (567)
Q Consensus 524 g~-------~~~~~~~---~~~vl~~~R~~~~------------~~~~~vv~N~~~~~~~~~l~~ 566 (567)
+. ..++... .+.|++|.-.... -+.++||+|.+.++++++++.
T Consensus 860 ~t~~~I~~~v~F~~~g~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~ 924 (970)
T PLN02877 860 RTANAIQERVRFHNTGPSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEVSFESPA 924 (970)
T ss_pred CCHHHHHhhcEEeccCCCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCCccEEEeccc
Confidence 21 2222221 2379999875411 146999999999999988764
No 37
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.77 E-value=9.1e-18 Score=181.38 Aligned_cols=262 Identities=13% Similarity=0.141 Sum_probs=154.5
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccc-cCCCCCCCCCCCCCCCCCCccccccccC-CCchhHHHHHH
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMF-EAGDFKDEKYKPGKEGSMNYDDLIHDKT-TDLPELYEILV 135 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 135 (567)
..+|+.+++||++|+++++||++ +||||||+|+|.+|. .+.+....+ +.+.. +.+. ....+...||+
T Consensus 358 ~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f----~~~~~------~~~g~~~d~~a~~fL~ 427 (758)
T PLN02447 358 RLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAF----TGNYN------EYFGMATDVDAVVYLM 427 (758)
T ss_pred ceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCccccc----ccCcc------cccCCccChHHHHHHH
Confidence 47999999999999999999998 699999999999883 111110000 00000 0010 11245788999
Q ss_pred HHHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHH-
Q psy15648 136 KWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKD- 214 (567)
Q Consensus 136 ~~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 214 (567)
.+++.+++. .|++++|||..+..+.+..... .++.++|+.++..++.....-+..... +.+.+..+......
T Consensus 428 ~~N~~i~~~----~p~~~~IAEd~s~~p~l~~p~~-~GGlGFDykw~Mg~~~~~l~~l~~~~d--~~~~~~~l~~sl~~r 500 (758)
T PLN02447 428 LANDLLHGL----YPEAVTIAEDVSGMPTLCRPVQ-EGGVGFDYRLAMAIPDKWIELLKEKRD--EDWSMGDIVHTLTNR 500 (758)
T ss_pred HHHHHHHHh----CCCeEEEEEcCCCCCCccccCC-CCcCCcceEECCccchHHHHHHhhCCC--cccCHHHHHHHHhcc
Confidence 999999888 8999999999876666655443 345678888777665531100000000 00110112222221
Q ss_pred hCCCCCCceeeccCCCCCcc---------c-----ccCCc--------hH----HHHHHHHHHhCCCc-eeeeccccccC
Q psy15648 215 NLPAEGTSNWVYDNHDNPRV---------T-----NRLGK--------EL----ADAYLMISLLMPGV-GVTYYGDEIGM 267 (567)
Q Consensus 215 ~~~~~~~~~~fl~nHD~~R~---------~-----~~~~~--------~~----~~~a~a~ll~~pG~-P~iYyG~E~G~ 267 (567)
.+.+. ...|.+|||+... + +.+.. .+ .|++.++++++||. +++|+|.|+|.
T Consensus 501 ~~~E~--~I~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~ 578 (758)
T PLN02447 501 RYTEK--CVAYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGH 578 (758)
T ss_pred cccCc--eEeccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCC
Confidence 12221 2237899999654 2 12211 01 25566899999999 69999999998
Q ss_pred CCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHh
Q psy15648 268 EGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQ 347 (567)
Q Consensus 268 ~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~ 347 (567)
......+.+ .+. ........+|+-.... ......+.+++|.|++
T Consensus 579 ~ew~Dfpr~------~n~------ws~~~~~~~W~L~d~~------------------------~l~~~~l~~f~~~L~~ 622 (758)
T PLN02447 579 PEWIDFPRE------GNG------WSYDKCRRRWDLADAD------------------------HLRYKFLNAFDRAMMH 622 (758)
T ss_pred chhccCccc------ccc------cCcccccCCccccCCC------------------------chhhhHHHHHHHHHHH
Confidence 643100000 000 0112334566542110 0012457899999999
Q ss_pred ccccC-ccccCceEEeec-CCCcEEEEecc
Q psy15648 348 LRRTD-TMIYGAVSTHIL-NGEWVLGLSRA 375 (567)
Q Consensus 348 lR~~~-al~~G~~~~~~~-~~~~v~~f~R~ 375 (567)
|++++ +|..|....... .+++|++|.|.
T Consensus 623 l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~ 652 (758)
T PLN02447 623 LDEKYGFLTSEHQYVSRKDEGDKVIVFERG 652 (758)
T ss_pred HHhcCccccCCCceeeeecCCCCEEEEEeC
Confidence 99998 997654333322 36789999995
No 38
>PLN03244 alpha-amylase; Provisional
Probab=99.75 E-value=3.4e-17 Score=173.33 Aligned_cols=262 Identities=15% Similarity=0.168 Sum_probs=150.9
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCcc-ccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHH
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHM-FEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVK 136 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (567)
..+|+.+++||++|+++++||++ +||||||+|+|..| +.+.+.. .+.......++ .. ...+...||+.
T Consensus 499 ~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~-~f~g~~~~y~n-------~~--~d~dAv~fL~l 568 (872)
T PLN03244 499 RMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFA-SFNGDLDDYCN-------QY--VDKDALMYLIL 568 (872)
T ss_pred ceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccc-cccCCcccccc-------cc--CCchHHHHHHH
Confidence 57999999999999999999997 69999999999555 3222210 00000001111 11 12467889999
Q ss_pred HHHHHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHHhC
Q psy15648 137 WRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNL 216 (567)
Q Consensus 137 ~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (567)
+++++.+. .|++++|||..+..+.+..-.. .++.++|+.++...++....-+..... ..+....+........
T Consensus 569 aN~~ih~~----~P~~itIAEDsS~~P~vt~Pv~-~GGLGFDYKWnMgwmdd~lkylk~~pd--erw~~~~ItfsL~~nr 641 (872)
T PLN03244 569 ANEILHAL----HPKIITIAEDATYYPGLCEPTS-QGGLGFDYYVNLSAPDMWLDFLDNIPD--HEWSMSKIVSTLIANK 641 (872)
T ss_pred HHHHHHHh----CCCeEEEEEcCCCCcCccccCC-CCCCCccceecCcchHHHHHHHHhCCC--cccCHHHHhhhhhccc
Confidence 99998888 8999999998877666655433 345677777766544321000000000 0000011111110111
Q ss_pred CCCCCceeeccCCCCC----c-ccccC---------Cc--------hHHHHHHHHHHhCCCce-eeeccccccCCCCCCC
Q psy15648 217 PAEGTSNWVYDNHDNP----R-VTNRL---------GK--------ELADAYLMISLLMPGVG-VTYYGDEIGMEGPLVR 273 (567)
Q Consensus 217 ~~~~~~~~fl~nHD~~----R-~~~~~---------~~--------~~~~~a~a~ll~~pG~P-~iYyG~E~G~~~~~~~ 273 (567)
........|.+|||++ + ++..+ +. ...|++.++++++||.| ++|+|+|+|.....
T Consensus 642 r~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~-- 719 (872)
T PLN03244 642 EYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERI-- 719 (872)
T ss_pred CCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchhe--
Confidence 1112334599999992 1 11111 00 12366777899999998 79999999987641
Q ss_pred CCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-
Q psy15648 274 NDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD- 352 (567)
Q Consensus 274 ~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~- 352 (567)
++. ..++ . ....-...+|+-... .....+.+++|.|++|++++
T Consensus 720 --dfP-----r~gN-~--~s~~~arrdW~Lld~--------------------------~~hk~L~~FdrdLn~Ly~~~~ 763 (872)
T PLN03244 720 --EFP-----MPSN-N--FSFSLANRCWDLLEN--------------------------EVHHHLFSFDKDLMDLDENEG 763 (872)
T ss_pred --ecc-----ccCC-C--ccccccccCccccCC--------------------------hhHHHHHHHHHHHHHHHhcCc
Confidence 000 0000 0 000112345653211 00245889999999999998
Q ss_pred ccccCceEEeec-CCCcEEEEecc
Q psy15648 353 TMIYGAVSTHIL-NGEWVLGLSRA 375 (567)
Q Consensus 353 al~~G~~~~~~~-~~~~v~~f~R~ 375 (567)
+|..|....... ++++|++|.|.
T Consensus 764 aL~~gf~wI~~~d~e~kVIAF~R~ 787 (872)
T PLN03244 764 ILSRGLPNIHHVKDAAMVISFMRG 787 (872)
T ss_pred ccccCCcEEeeecCCCCEEEEEec
Confidence 987664443333 36789999995
No 39
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=99.72 E-value=1.5e-17 Score=181.06 Aligned_cols=139 Identities=17% Similarity=0.181 Sum_probs=104.3
Q ss_pred hhhceeecccCCCCccccccCC-----------HHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCC
Q psy15648 385 RERAKFEAYDNHDNPRVTNRLG-----------KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGA 453 (567)
Q Consensus 385 ~~~~~v~~l~nHD~~R~~~~~~-----------~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~ 453 (567)
.+.+++++++|||+.|+.+++. ..+++++++++||+|||||||||||+|+++... ...+++|+
T Consensus 426 ~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~-~n~y~~~d----- 499 (605)
T TIGR02104 426 DPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGD-ENSYNSPD----- 499 (605)
T ss_pred ChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCC-CCCccCCC-----
Confidence 4567999999999999865532 237899999999999999999999999986421 12233443
Q ss_pred CCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCcccc-CCee-----
Q psy15648 454 RADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIY-GAVS----- 527 (567)
Q Consensus 454 ~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~-g~~~----- 527 (567)
++.+|+|+.... ..+++++||+||+|||++|+|+ +...
T Consensus 500 --------~~~~ldW~~~~~----------------------------~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~ 543 (605)
T TIGR02104 500 --------SINQLDWDRKAT----------------------------FKDDVNYIKGLIALRKAHPAFRLSSAEDIRKH 543 (605)
T ss_pred --------cccccCcccccc----------------------------chHHHHHHHHHHHHHhhCccccCCChhhhcce
Confidence 578999975221 3359999999999999999994 4332
Q ss_pred --EEEecCCeEEEEEEEcCCC----CEEEEEEeCCCccEEEeCC
Q psy15648 528 --THILNGEWVLGLSRSMPGN----DTYIVLINFNSIIEEVDLS 565 (567)
Q Consensus 528 --~~~~~~~~vl~~~R~~~~~----~~~~vv~N~~~~~~~~~l~ 565 (567)
.+...++.|++|.|..... ++++|++|+++.+++++++
T Consensus 544 ~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~~~~v~lp 587 (605)
T TIGR02104 544 LEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANPEPVDIQLP 587 (605)
T ss_pred eEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCCCeEEECC
Confidence 1111346799999975222 4799999999999998876
No 40
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.5e-17 Score=173.58 Aligned_cols=202 Identities=19% Similarity=0.149 Sum_probs=119.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHH
Q psy15648 61 LNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRA 139 (567)
Q Consensus 61 LN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 139 (567)
.|+..++||++|++++.|||+ ++|||+|+|||..|.-.. ..+......|+.++ ....-++.++++...+
T Consensus 273 ~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d----~~~~~~~~~~n~~g------gr~n~~a~efl~~~n~ 342 (628)
T COG0296 273 FNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLD----YSRAEGEWVPNEYG------GRENLEAAEFLRNLNS 342 (628)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccc----hhhhhhcccccccC------CcccHHHHHHhhhhhh
Confidence 445589999999999999999 699999999999995432 22222222232221 1122356677777777
Q ss_pred HHHHHhhhcCCceEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHHHHhCCCC
Q psy15648 140 LVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAE 219 (567)
Q Consensus 140 ~~~~~~~~~~~~~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (567)
++... .|+.++|+|.|++...+..... .++.++++-.|+..+++...-...... .+.+.+....... .+ ..
T Consensus 343 ~i~~~----~pg~~~iaeestd~~~~t~~~~-~gG~gf~yk~nmg~m~D~~~y~~~~~~-~r~~~h~~~tf~~--~y-~~ 413 (628)
T COG0296 343 LIHEE----EPGAMTIAEESTDDPHVTLPVA-IGGLGFGYKWNMGWMHDTLFYFGKDPV-YRKYHHGELTFGL--LY-AF 413 (628)
T ss_pred hhccc----CCCceeeeeeccCCCCceeeec-ccccchhhhhhhhhHhhHHHhcccCcc-ccccccCCCcccc--cc-cc
Confidence 77665 7889999999986555433222 223455555555533321100000000 0000000000000 00 11
Q ss_pred CCceeeccCCCCC-----cccccCC------chHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCcc
Q psy15648 220 GTSNWVYDNHDNP-----RVTNRLG------KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPN 281 (567)
Q Consensus 220 ~~~~~fl~nHD~~-----R~~~~~~------~~~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~ 281 (567)
.-..+++.|||+. -+..++. ...+++++++|+++||+|+|+||+|+|.......+.++..+.
T Consensus 414 se~~~l~~sHDevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~ 486 (628)
T COG0296 414 SENVVLPLSHDEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLL 486 (628)
T ss_pred ceeEeccccccceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhh
Confidence 2233589999996 2333332 235799999999999999999999999999876665555533
No 41
>KOG0471|consensus
Probab=99.57 E-value=6.7e-15 Score=157.20 Aligned_cols=166 Identities=36% Similarity=0.655 Sum_probs=139.5
Q ss_pred eecccCCCCccccccCCHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccC
Q psy15648 390 FEAYDNHDNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWD 469 (567)
Q Consensus 390 v~~l~nHD~~R~~~~~~~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~ 469 (567)
.-.+.|||+.|+.++++....++..++++++||+|++|+|+|+||.+-.+...+..+|..+ ..|+||+|+
T Consensus 348 ~W~~~~~~~~r~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~----------~~rt~~~w~ 417 (545)
T KOG0471|consen 348 HWVLGNHDQARLASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLM----------QSRTPMQWD 417 (545)
T ss_pred eeeecCccchhhHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHh----------ccCCccccc
Confidence 3455699999999999998899999999999999999999999999875545544455311 018999999
Q ss_pred CCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cCCeeEEEecCCeEEEEEEEcCCCCE
Q psy15648 470 STKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSRSMPGNDT 548 (567)
Q Consensus 470 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g~~~~~~~~~~~vl~~~R~~~~~~~ 548 (567)
.+.++||+.+.++|+++..++..+|++.|.+++++++..++++..||+....+ .|.. .....++.++++.|...+...
T Consensus 418 ~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~-~~~~~~~~if~~~r~~~~~~~ 496 (545)
T KOG0471|consen 418 ESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSF-VLFAATPGLFSFSRNWDGNER 496 (545)
T ss_pred cccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccce-eeecCCCceEEEEeccCCCce
Confidence 99999999766999999999999999999999999999999999999987544 4544 344556789999998877889
Q ss_pred EEEEEeCCCccEEEeCCC
Q psy15648 549 YIVLINFNSIIEEVDLSV 566 (567)
Q Consensus 549 ~~vv~N~~~~~~~~~l~~ 566 (567)
+++++|+++.+..+.+..
T Consensus 497 ~~~~~~~~~~~~~~~~~~ 514 (545)
T KOG0471|consen 497 FIAVLNFGDSPLSLNLTD 514 (545)
T ss_pred EEEEEecCCccccccccc
Confidence 999999999988777654
No 42
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=99.55 E-value=8.6e-15 Score=156.89 Aligned_cols=249 Identities=19% Similarity=0.222 Sum_probs=164.2
Q ss_pred CCCccCCCCH---HHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHH
Q psy15648 57 KQPDLNFRSK---KLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYE 132 (567)
Q Consensus 57 ~~pdLN~~np---~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (567)
..++||+++| +||++|+++++||++ +||||||||++.++.+. ..++
T Consensus 207 wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~------------------------------~~~~ 256 (542)
T TIGR02402 207 WGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADT------------------------------SAKH 256 (542)
T ss_pred CCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccc------------------------------cHHH
Confidence 3478999999 999999999999997 69999999999999321 1357
Q ss_pred HHHHHHHHHHHHhhhcCCc---eEEEEeccCCHHHHhhhhccCCCCCCCcccccccccCCCCCc-------------chH
Q psy15648 133 ILVKWRALVDEYKQKTGHT---RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGE-------------RAL 196 (567)
Q Consensus 133 ~l~~~r~~~~~~~~~~~~~---~~ligE~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~ 196 (567)
||+++++.+++. .|+ +++|||.+.+......... .++.+++..|+.++.+.+.... +..
T Consensus 257 ~l~~~~~~~~~~----~p~~~~~~li~E~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 331 (542)
T TIGR02402 257 ILEELAREVHEL----AAELRPVHLIAESDLNDPSLVTPRE-DGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLA 331 (542)
T ss_pred HHHHHHHHHHHH----CCCCceEEEEEecCCCCCccccccc-CCccceEEEECchHHHHHHHHhcCCcceeecccCcCHH
Confidence 999999988887 666 9999998753322221111 1223456666665543321110 122
Q ss_pred HHhhhhhhhHhHHHHHHH-------------hCC----CCCCceeeccCCCC-------CcccccCCchHHHHHHHHHHh
Q psy15648 197 VLILNHYMKVKSKNQFKD-------------NLP----AEGTSNWVYDNHDN-------PRVTNRLGKELADAYLMISLL 252 (567)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~-------------~~~----~~~~~~~fl~nHD~-------~R~~~~~~~~~~~~a~a~ll~ 252 (567)
.+ .+.+..... ..+ ......+|++|||+ .|+++.++.+++++|++++||
T Consensus 332 ~l-------~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl~~~~~~~~~~la~alllt 404 (542)
T TIGR02402 332 AL-------AKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRALGERLSQLLSPGSLKLAAALLLL 404 (542)
T ss_pred HH-------HHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCcccccccchhhhhhhcCCHHHHHHHHHHHHH
Confidence 22 222221100 000 11234579999998 799988888889999999999
Q ss_pred CCCceeeeccccccCCCCCCCCCcccCccccC---CCC----------CCCCCCC------CCCCcccCCCCCCCCCCCC
Q psy15648 253 MPGVGVTYYGDEIGMEGPLVRNDERRDPNNAG---GAR----------ADETRDP------ERTPMQWDSTKHAGFSTAR 313 (567)
Q Consensus 253 ~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~---~~~----------~~~~~d~------~r~pm~W~~~~~~gf~~~~ 313 (567)
+||+||||||||+|+++.+..++++.|+.... .++ .....|| +|.+++|+...
T Consensus 405 ~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~-------- 476 (542)
T TIGR02402 405 SPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAE-------- 476 (542)
T ss_pred cCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCccccc--------
Confidence 99999999999999999876666654432110 000 0001111 35566665431
Q ss_pred CCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEEee---cCCCcEEEEe
Q psy15648 314 KTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVSTHI---LNGEWVLGLS 373 (567)
Q Consensus 314 ~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~~~---~~~~~v~~f~ 373 (567)
.....+++++||+||+|||++ +|+.+....+. ..++.++++.
T Consensus 477 ------------------~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~ 522 (542)
T TIGR02402 477 ------------------SGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVR 522 (542)
T ss_pred ------------------ccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEE
Confidence 012356999999999999999 99888644332 2356788876
No 43
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.5e-14 Score=155.27 Aligned_cols=225 Identities=15% Similarity=0.088 Sum_probs=132.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHH
Q psy15648 55 SAKQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEI 133 (567)
Q Consensus 55 ~~~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (567)
..+--.||.++|.||+.|+|+++||++ ++|||||+|.+..+.++....+ + .+.+...
T Consensus 323 TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~--~--------------------~~~l~~~ 380 (697)
T COG1523 323 TGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFD--I--------------------NANLFLA 380 (697)
T ss_pred CccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccc--c--------------------Ccchhhh
Confidence 344458999999999999999999998 6999999999999966543110 0 0111112
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeccCCHHH---HhhhhccCCCCCCCcccccccccCCCCCc-chHHHhhhhhhhHhHH
Q psy15648 134 LVKWRALVDEYKQKTGHTRILIVESYTDIEN---TMKYFKYNGRPAAHYPFNFQLVLDPDKGE-RALVLILNHYMKVKSK 209 (567)
Q Consensus 134 l~~~r~~~~~~~~~~~~~~~ligE~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 209 (567)
++.|.- -....+|||.|+.-+. +..+-....-.+.+..|.-.....+.+.. ....+ ++.+
T Consensus 381 ~~~~p~---------l~~~kliAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~-------a~rl 444 (697)
T COG1523 381 GEGDPV---------LSGVKLIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEF-------AKRL 444 (697)
T ss_pred ccCCcc---------ccCceeeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccHHHH-------HHHh
Confidence 222211 1134488998853211 11111000001222223222222222221 23333 3333
Q ss_pred HHHHHhCC----CCCCceeeccCCCCCcccccCC----------------------------------------chHHHH
Q psy15648 210 NQFKDNLP----AEGTSNWVYDNHDNPRVTNRLG----------------------------------------KELADA 245 (567)
Q Consensus 210 ~~~~~~~~----~~~~~~~fl~nHD~~R~~~~~~----------------------------------------~~~~~~ 245 (567)
....+.+. ......+|+..||.-.+..... ....+.
T Consensus 445 ~gS~d~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~ 524 (697)
T COG1523 445 AGSSDLYKRNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTN 524 (697)
T ss_pred hcCcchhhccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHH
Confidence 33211121 1334567999999844332220 002577
Q ss_pred HHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccC-CCCCCCCCCCCCCCCCCCCCcc
Q psy15648 246 YLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWD-STKHAGFSTARKTWLPVNPNYY 324 (567)
Q Consensus 246 a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~-~~~~~gf~~~~~~w~~~~~~~~ 324 (567)
+.+.+|++.|+||+-.|||+|.++.. ..+.++.+..-.-+.|+ ..
T Consensus 525 ~~~tlllsqG~pml~~gDe~~rtq~g--------------nnNsYcqdn~inwlDW~~~~-------------------- 570 (697)
T COG1523 525 LLATLLLSQGTPMLLAGDEFGRTQYG--------------NNNAYCQDNEINWLDWSTEA-------------------- 570 (697)
T ss_pred HHHHHHhhcCCccccccccccccccc--------------ccccccCCcccceeccCccc--------------------
Confidence 78889999999999999999998763 23445566666677777 22
Q ss_pred cccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEE
Q psy15648 325 YLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVST 361 (567)
Q Consensus 325 ~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~ 361 (567)
...++++.+.||+||+++ +|+...+..
T Consensus 571 ----------~~~l~~f~~~lIaLRk~~~af~~~~f~~ 598 (697)
T COG1523 571 ----------NNDLVEFTKGLIALRKAHPAFRRRSFFE 598 (697)
T ss_pred ----------cHHHHHHHHHHHHHhhhcchhcccchhh
Confidence 356899999999999999 998755544
No 44
>PRK12313 glycogen branching enzyme; Provisional
Probab=99.53 E-value=2.4e-14 Score=157.10 Aligned_cols=121 Identities=15% Similarity=0.238 Sum_probs=90.9
Q ss_pred cccCCCC-----ccccccCCH------HHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCC
Q psy15648 392 AYDNHDN-----PRVTNRLGK------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRD 460 (567)
Q Consensus 392 ~l~nHD~-----~R~~~~~~~------~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~ 460 (567)
+++|||+ .|+..++.. .++|++++++||+||+||||||+|+|+.+.. +
T Consensus 424 l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~-------~-------------- 482 (633)
T PRK12313 424 LPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEW-------K-------------- 482 (633)
T ss_pred cCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccC-------C--------------
Confidence 5579998 577776642 3689999999999999999999999998752 1
Q ss_pred CCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCcccc------CCeeEEEec--
Q psy15648 461 PERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIY------GAVSTHILN-- 532 (567)
Q Consensus 461 ~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~------g~~~~~~~~-- 532 (567)
.+.+|+|+.... ....+++++||+|++||+++|+|+ +++..+..+
T Consensus 483 -~~~~l~W~~~~~--------------------------~~~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~ 535 (633)
T PRK12313 483 -HDESLEWHLLED--------------------------PMNAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDADDA 535 (633)
T ss_pred -ccCCCCccccCC--------------------------hhHHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEECcCC
Confidence 236789975211 013459999999999999999994 344544433
Q ss_pred CCeEEEEEEEc-CCCCEEEEEEeCCCccE
Q psy15648 533 GEWVLGLSRSM-PGNDTYIVLINFNSIIE 560 (567)
Q Consensus 533 ~~~vl~~~R~~-~~~~~~~vv~N~~~~~~ 560 (567)
++.|++|.|.. .+++.++||+|+++.+.
T Consensus 536 ~~~vlaf~R~~~~~~~~llvv~N~s~~~~ 564 (633)
T PRK12313 536 DQSVLSFIRKGKNKGDFLVVVFNFTPVER 564 (633)
T ss_pred CCCEEEEEEeCCCCCceEEEEEeCCCCcc
Confidence 34699999975 35678999999998643
No 45
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.52 E-value=5.1e-14 Score=156.39 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=90.2
Q ss_pred ecccCCCCc-----cccccCCH------HHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCC
Q psy15648 391 EAYDNHDNP-----RVTNRLGK------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETR 459 (567)
Q Consensus 391 ~~l~nHD~~-----R~~~~~~~------~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r 459 (567)
.+++|||+. |+..++.. .++|++++++||+||+||||||+|+|+.+.. +
T Consensus 519 ~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~-------~------------- 578 (726)
T PRK05402 519 VLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREW-------N------------- 578 (726)
T ss_pred cCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCC-------C-------------
Confidence 356799984 55555532 3688999999999999999999999999863 1
Q ss_pred CCCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cC-----CeeEEEec-
Q psy15648 460 DPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YG-----AVSTHILN- 532 (567)
Q Consensus 460 ~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g-----~~~~~~~~- 532 (567)
.+.+|+|+.... .....++++||+|++||+++|+| .| .+..+...
T Consensus 579 --~~~~l~W~~~~~--------------------------~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~ 630 (726)
T PRK05402 579 --HDASLDWHLLDF--------------------------PWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADD 630 (726)
T ss_pred --ccCcCCccccCC--------------------------cchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEeccc
Confidence 247899975211 01345999999999999999999 33 33333332
Q ss_pred -CCeEEEEEEEcCC-CCEEEEEEeCCCccE
Q psy15648 533 -GEWVLGLSRSMPG-NDTYIVLINFNSIIE 560 (567)
Q Consensus 533 -~~~vl~~~R~~~~-~~~~~vv~N~~~~~~ 560 (567)
++.|++|.|...+ +++++||+|+++.+.
T Consensus 631 ~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~ 660 (726)
T PRK05402 631 AENSVLSFLRRGKDDGEPLLVVCNFTPVPR 660 (726)
T ss_pred CCCCEEEEEEecCCCCCeEEEEEeCCCCcc
Confidence 4579999998622 589999999998653
No 46
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.52 E-value=7.3e-14 Score=151.09 Aligned_cols=170 Identities=34% Similarity=0.521 Sum_probs=127.9
Q ss_pred cccCCCCccccccCCH------HHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcc
Q psy15648 392 AYDNHDNPRVTNRLGK------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTP 465 (567)
Q Consensus 392 ~l~nHD~~R~~~~~~~------~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~ 465 (567)
++.|||++|+.++.+. ..++++.+++++++|+|+||||+|+||.+.........++.. .......+|+++|.+
T Consensus 310 ~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~ 388 (505)
T COG0366 310 FLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVE-LDSIILLSRDGCRTP 388 (505)
T ss_pred hhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhh-hhhhhhccccCCCCC
Confidence 5779999999988754 457888889999999999999999999987432211111100 011234678899999
Q ss_pred cccC-CCCCCCcCCCCCCcCCCCCCccc-ccHHHhhcC--CCcHHHHHHHHHHHhhcCccc-c-CCeeEEEe-cCCeEEE
Q psy15648 466 MQWD-STKHAGFSTARKTWLPVNPNYYY-LNVEAQKKA--DWSTYKLYRKLSQLRRTDTMI-Y-GAVSTHIL-NGEWVLG 538 (567)
Q Consensus 466 ~~W~-~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~L~~lRk~~~~l-~-g~~~~~~~-~~~~vl~ 538 (567)
|+|+ .....||++ ..+|++.+..+.. ++++.+..+ ..+++.++++|+++|+.++.+ . |....... .+..+++
T Consensus 389 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (505)
T COG0366 389 MPWDENGLNAGFTG-GKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLA 467 (505)
T ss_pred cCCCCCCCCCCccC-CCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEE
Confidence 9999 578899998 5899999987777 899998877 789999999999999988444 3 42333332 3447999
Q ss_pred EEEEcCCCCEEEEEEeCCCccEEEeC
Q psy15648 539 LSRSMPGNDTYIVLINFNSIIEEVDL 564 (567)
Q Consensus 539 ~~R~~~~~~~~~vv~N~~~~~~~~~l 564 (567)
+.|.. .++.++|++|++.....+.+
T Consensus 468 ~~~~~-~~~~~~~~~n~~~~~~~~~~ 492 (505)
T COG0366 468 FLRES-GGETLLVVNNLSEEEQEVEL 492 (505)
T ss_pred Eeccc-CCceEEEEEcCCCccccccC
Confidence 99987 67789999999987544433
No 47
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.51 E-value=7e-14 Score=152.42 Aligned_cols=122 Identities=13% Similarity=0.226 Sum_probs=90.1
Q ss_pred cccCCCC-----ccccccCCH------HHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCC
Q psy15648 392 AYDNHDN-----PRVTNRLGK------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRD 460 (567)
Q Consensus 392 ~l~nHD~-----~R~~~~~~~------~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~ 460 (567)
+++|||+ .|+..++.. .++|++++++||+||+||||||+|+|+.++. +
T Consensus 411 ~~~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~-------~-------------- 469 (613)
T TIGR01515 411 LPLSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEW-------N-------------- 469 (613)
T ss_pred cCCCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCC-------C--------------
Confidence 4578998 566665543 4789999999999999999999999997652 1
Q ss_pred CCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cC-----CeeEEEe--c
Q psy15648 461 PERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YG-----AVSTHIL--N 532 (567)
Q Consensus 461 ~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g-----~~~~~~~--~ 532 (567)
.+.+|+|+.... .....++++||+|++||+++|+| .+ ++..+.. .
T Consensus 470 -~~~~l~W~~~~~--------------------------~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~~~ 522 (613)
T TIGR01515 470 -DTEQLDWHLLSF--------------------------PMHQGVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVDDD 522 (613)
T ss_pred -CCccCCCccccC--------------------------cccHHHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcccC
Confidence 236789964211 01345999999999999999999 33 2333333 2
Q ss_pred CCeEEEEEEEcC-CCCEEEEEEeCCCccEE
Q psy15648 533 GEWVLGLSRSMP-GNDTYIVLINFNSIIEE 561 (567)
Q Consensus 533 ~~~vl~~~R~~~-~~~~~~vv~N~~~~~~~ 561 (567)
+..|++|.|... .+++++||+|+++.+..
T Consensus 523 ~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~ 552 (613)
T TIGR01515 523 EQSVFSFIRRAKKHGEALVIICNFTPVVRH 552 (613)
T ss_pred CCCEEEEEEecCCCCCeEEEEEeCCCCCcc
Confidence 457999999863 24689999999998654
No 48
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=99.50 E-value=4.7e-14 Score=162.87 Aligned_cols=137 Identities=23% Similarity=0.318 Sum_probs=96.0
Q ss_pred hhceeecccCCCCccccccCC----------------------------------------HHHHHHHHHHHHhCCCcee
Q psy15648 386 ERAKFEAYDNHDNPRVTNRLG----------------------------------------KELADAYLMISLLMPGVGV 425 (567)
Q Consensus 386 ~~~~v~~l~nHD~~R~~~~~~----------------------------------------~~~~~~~~~l~l~~pG~P~ 425 (567)
+...+|+++|||..|+.+.+. ..+++++++++||++||||
T Consensus 440 ~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~ 519 (1221)
T PRK14510 440 FSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPM 519 (1221)
T ss_pred cccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 455789999999988876443 2258899999999999999
Q ss_pred eeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcH
Q psy15648 426 TYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWST 505 (567)
Q Consensus 426 iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (567)
||||||+|.+... ....+.+|+ +|..|+|+.. ..++
T Consensus 520 Iy~GdE~g~tq~G-n~n~y~~~~-------------~r~~~~W~~~------------------------------~~~l 555 (1221)
T PRK14510 520 LYYGDEAGRSQNG-NNNGYAQDN-------------NRGTYPWGNE------------------------------DEEL 555 (1221)
T ss_pred EecchhcccccCC-CCCCCCCCC-------------ccccCCcccc------------------------------cHHH
Confidence 9999999965431 112335565 7899999752 2359
Q ss_pred HHHHHHHHHHhhcCccc-cCCeeEEEe----cCCeEEEE----------------------EE--EcC---CCCEEEEEE
Q psy15648 506 YKLYRKLSQLRRTDTMI-YGAVSTHIL----NGEWVLGL----------------------SR--SMP---GNDTYIVLI 553 (567)
Q Consensus 506 ~~~~~~L~~lRk~~~~l-~g~~~~~~~----~~~~vl~~----------------------~R--~~~---~~~~~~vv~ 553 (567)
+++||+||+|||++|+| .|.+..... ..+.|..+ .. ... .++.++|++
T Consensus 556 ~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 635 (1221)
T PRK14510 556 LSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGEQNQDRFWDKRSTEALVAVLNRPAGERQVDDRFAVLL 635 (1221)
T ss_pred HHHHHHHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCCcCChhhcCCCCCCEEEEEEecCCCCCCCCCeEEEEE
Confidence 99999999999999999 454432210 01123222 22 110 124799999
Q ss_pred eCCCccEEEeCCC
Q psy15648 554 NFNSIIEEVDLSV 566 (567)
Q Consensus 554 N~~~~~~~~~l~~ 566 (567)
|.+..++++.||.
T Consensus 636 N~~~~~~~~~lP~ 648 (1221)
T PRK14510 636 NSHHEELTLHLPE 648 (1221)
T ss_pred CCCCCCeEEECCh
Confidence 9999999998873
No 49
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.46 E-value=2.6e-13 Score=144.49 Aligned_cols=113 Identities=21% Similarity=0.218 Sum_probs=85.3
Q ss_pred hceeecccCCCCccccccCCHH---HHHHHHHHHHhCC-CceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCC
Q psy15648 387 RAKFEAYDNHDNPRVTNRLGKE---LADAYLMISLLMP-GVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPE 462 (567)
Q Consensus 387 ~~~v~~l~nHD~~R~~~~~~~~---~~~~~~~l~l~~p-G~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~ 462 (567)
...+++++|||++|+.+..+.. .+++|++++||+| |+|+||||+|+|+.+.. +
T Consensus 320 ~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~--------~--------------- 376 (479)
T PRK09441 320 FHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYY--------I--------------- 376 (479)
T ss_pred ccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCc--------c---------------
Confidence 3467899999999998865422 2589999999999 99999999999987641 0
Q ss_pred CcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccccCCeeEEEecCCeEEEEEEE
Q psy15648 463 RTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHILNGEWVLGLSRS 542 (567)
Q Consensus 463 r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~g~~~~~~~~~~~vl~~~R~ 542 (567)
..++++++|+|++|||+.+ .|....+. .++.+++|.|.
T Consensus 377 ---------------------------------------~~~l~~~i~~Li~lRk~~~--~G~~~~~~-~~~~~~~~~R~ 414 (479)
T PRK09441 377 ---------------------------------------DMPFKEKLDKLLLARKNFA--YGEQTDYF-DHPNCIGWTRS 414 (479)
T ss_pred ---------------------------------------cchHHHHHHHHHHHHHHhC--CCCeeEee-cCCCEEEEEEe
Confidence 1128899999999999854 56665544 45789999998
Q ss_pred cCC-CCEEEEEEeCCCcc-EEEeC
Q psy15648 543 MPG-NDTYIVLINFNSII-EEVDL 564 (567)
Q Consensus 543 ~~~-~~~~~vv~N~~~~~-~~~~l 564 (567)
..+ ++.++||+|.+..+ .++++
T Consensus 415 ~~~~~~~vvvvinn~~~~~~~~~~ 438 (479)
T PRK09441 415 GDEENPGLAVVISNGDAGEKTMEV 438 (479)
T ss_pred cCCCCccEEEEEECCCCCcEEEEe
Confidence 732 25789999887644 33544
No 50
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=99.45 E-value=4.1e-13 Score=147.03 Aligned_cols=116 Identities=20% Similarity=0.205 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCC
Q psy15648 409 LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNP 488 (567)
Q Consensus 409 ~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~ 488 (567)
++|++++++||+|||||||||||+|++.... ++|- .++...+.|+|+...
T Consensus 501 ~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~-----~n~y---------~~~~~~~~~dW~~~~---------------- 550 (688)
T TIGR02100 501 QQRNLLATLLLSQGTPMLLAGDEFGRTQQGN-----NNAY---------CQDNEIGWVDWSLDE---------------- 550 (688)
T ss_pred HHHHHHHHHHHcCCCceeeecHhhccCCCCC-----CCCc---------cCCCcccccCccccc----------------
Confidence 6889999999999999999999999985311 2221 233345778997422
Q ss_pred CcccccHHHhhcCCCcHHHHHHHHHHHhhcCcccc-CCee-----------EEEe--------------cCCeEEEEEEE
Q psy15648 489 NYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIY-GAVS-----------THIL--------------NGEWVLGLSRS 542 (567)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~-g~~~-----------~~~~--------------~~~~vl~~~R~ 542 (567)
...++++++|+||+|||++|+|+ +.+. .... ....+++|...
T Consensus 551 ------------~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~ 618 (688)
T TIGR02100 551 ------------GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEEDWENPETRLLCMVLS 618 (688)
T ss_pred ------------ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChhhcCCCCCCEEEEEEe
Confidence 14569999999999999999983 3221 1111 12367888775
Q ss_pred cCC-------CCEEEEEEeCCCccEEEeCCC
Q psy15648 543 MPG-------NDTYIVLINFNSIIEEVDLSV 566 (567)
Q Consensus 543 ~~~-------~~~~~vv~N~~~~~~~~~l~~ 566 (567)
... .+.++|++|.+.+++.+.||.
T Consensus 619 ~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~ 649 (688)
T TIGR02100 619 DMDPGGDPGADDSLLLLLNAGPEPVPFKLPG 649 (688)
T ss_pred CCccCCCCCCCCeEEEEECCCCCCeEEECCC
Confidence 411 146999999999999998874
No 51
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.42 E-value=1.1e-12 Score=142.40 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=86.9
Q ss_pred cccCCCCccccc-----cC-C-----HHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCC
Q psy15648 392 AYDNHDNPRVTN-----RL-G-----KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRD 460 (567)
Q Consensus 392 ~l~nHD~~R~~~-----~~-~-----~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~ 460 (567)
+++|||+.+... .+ | ...+++++++++|.||+||||||+|+|+.+..
T Consensus 419 l~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew---------------------- 476 (639)
T PRK14706 419 LAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEW---------------------- 476 (639)
T ss_pred cCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCC----------------------
Confidence 667999977532 12 2 24688999999999999999999999975431
Q ss_pred CCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cCC-----eeEEEec--
Q psy15648 461 PERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGA-----VSTHILN-- 532 (567)
Q Consensus 461 ~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g~-----~~~~~~~-- 532 (567)
.++.+|+|+..... ....+++++|+|++|||++|+| .|+ +..+...
T Consensus 477 ~~~~~l~W~l~~~~--------------------------~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~ 530 (639)
T PRK14706 477 NHDASLPWYLTDVP--------------------------DHRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDT 530 (639)
T ss_pred CcccCCCCcccCCH--------------------------HHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecC
Confidence 15678899763210 0234999999999999999999 343 3333332
Q ss_pred CCeEEEEEEEcCC-CCEEEEEEeCCCc
Q psy15648 533 GEWVLGLSRSMPG-NDTYIVLINFNSI 558 (567)
Q Consensus 533 ~~~vl~~~R~~~~-~~~~~vv~N~~~~ 558 (567)
++.|++|.|...+ ++.++||+||++.
T Consensus 531 ~~~VlaF~R~~~~~~~~vlvV~Nfs~~ 557 (639)
T PRK14706 531 DNSVYAYVRRDSESGAWSLAVANLTPV 557 (639)
T ss_pred CCCEEEEEEecCCCCeeEEEEEeCCCC
Confidence 4579999998622 3359999999985
No 52
>PRK03705 glycogen debranching enzyme; Provisional
Probab=99.33 E-value=3.3e-12 Score=138.83 Aligned_cols=110 Identities=20% Similarity=0.173 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCC
Q psy15648 409 LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNP 488 (567)
Q Consensus 409 ~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~ 488 (567)
+.|++++++|+++||||||||||+|++.... ++| ..++...+.|+|+..
T Consensus 495 ~~r~~~a~l~~sqG~P~i~~GdE~grtq~G~-----nN~---------y~~~~~i~~~dW~~~----------------- 543 (658)
T PRK03705 495 SIHALLTTLLLSQGTPMLLAGDEHGHSQHGN-----NNA---------YCQDNALTWLDWSQA----------------- 543 (658)
T ss_pred HHHHHHHHHHHcCCchHHHhhHHhccCCCCC-----CCC---------ccCCCCccccccchh-----------------
Confidence 5788999999999999999999999984311 111 112224466888641
Q ss_pred CcccccHHHhhcCCCcHHHHHHHHHHHhhcCcccc-CCe--------eEEEecC-----------CeEEEEEEEcCCCCE
Q psy15648 489 NYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIY-GAV--------STHILNG-----------EWVLGLSRSMPGNDT 548 (567)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~-g~~--------~~~~~~~-----------~~vl~~~R~~~~~~~ 548 (567)
..++++++|+||+|||++|+|+ ..+ .++...+ ..++++.. .+.
T Consensus 544 -------------~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~~----~~~ 606 (658)
T PRK03705 544 -------------DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPKQLQILL----SDR 606 (658)
T ss_pred -------------hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcceEEEEEE----CCC
Confidence 2359999999999999999983 222 1111111 23444443 245
Q ss_pred EEEEEeCCCccEEEeCCC
Q psy15648 549 YIVLINFNSIIEEVDLSV 566 (567)
Q Consensus 549 ~~vv~N~~~~~~~~~l~~ 566 (567)
++|++|.+..++.++||.
T Consensus 607 ~~v~~N~~~~~~~~~lp~ 624 (658)
T PRK03705 607 WLIAINATLEVTEIVLPE 624 (658)
T ss_pred EEEEECCCCCCeEEECCC
Confidence 999999999999999873
No 53
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.26 E-value=1.8e-11 Score=134.17 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=82.4
Q ss_pred HHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCC--CcCCCCCCcCCCCC
Q psy15648 411 DAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHA--GFSTARKTWLPVNP 488 (567)
Q Consensus 411 ~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~--~f~~~~~~~~~~~~ 488 (567)
....++.||+||||+||||+|+|+.+- .||+ +|+|++|...... ..... .+
T Consensus 704 Laq~lLqlT~PGVPdIYqG~E~wd~sl-------vDPD-------------NRRpvd~~~r~~~L~~l~~~---~~---- 756 (879)
T PRK14511 704 LAQTLLKLTSPGVPDVYQGTELWDFSL-------VDPD-------------NRRPVDFAARAAALARLDEG---AE---- 756 (879)
T ss_pred HHHHHHHHCcCCCCcccCcccchhccC-------CCCC-------------CCCCCChHHHHHHHhhcccc---cc----
Confidence 345667899999999999999999875 6998 9999999752100 00000 00
Q ss_pred CcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc--cCCeeEEEec---CCeEEEEEEEcCCCCEEEEEEeCCCc
Q psy15648 489 NYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI--YGAVSTHILN---GEWVLGLSRSMPGNDTYIVLINFNSI 558 (567)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l--~g~~~~~~~~---~~~vl~~~R~~~~~~~~~vv~N~~~~ 558 (567)
...-.+....+.++++|+++||++|+| .|++..+... .+.|++|.|.. +++.++||+|....
T Consensus 757 -------~~~~~dg~~kl~~~~~lL~lRr~~p~Lf~~G~y~pL~~~G~~a~~v~AFaR~~-~~~~~vvvv~R~~~ 823 (879)
T PRK14511 757 -------LLPWDDGRIKLLLIARALRLRRDRPELFAGGEYLPLEVSGPHAGHVLAFARGG-GGGRALTVAPRLPA 823 (879)
T ss_pred -------cccCCcchHHHHHHHHHHHHHHhCHHHhhCCceEEEEecCCCCCcEEEEEEec-CCceEEEEeccccc
Confidence 001122334789999999999999998 4888777664 36799999987 78899999987643
No 54
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=99.21 E-value=6e-11 Score=134.23 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=97.0
Q ss_pred HhhhceeecccCCCCccccccCC----------H------HHHHHHHHHHHhCCCceeeeccccccCCCCCCCC--CC--
Q psy15648 384 KRERAKFEAYDNHDNPRVTNRLG----------K------ELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRN--DE-- 443 (567)
Q Consensus 384 ~~~~~~v~~l~nHD~~R~~~~~~----------~------~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~--~~-- 443 (567)
..+.+.|+++++||+.++...+. . .+.+++++++||++||||||+|||++-+...... +.
T Consensus 746 ~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~ 825 (1111)
T TIGR02102 746 DSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPV 825 (1111)
T ss_pred CCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCcccccccc
Confidence 35778999999999998854432 1 1678899999999999999999999877543100 00
Q ss_pred --CCCCCccCCCCCc--------------cCCCCCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHH
Q psy15648 444 --RRDPNNAGGARAD--------------ETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYK 507 (567)
Q Consensus 444 --~~dp~~~~~~~~~--------------~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (567)
-.-|.+..-.+.. -.-...-..++|+..... . .-.....+++
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~---------------------~-~~~~~~~~~~ 883 (1111)
T TIGR02102 826 SEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDA---------------------D-AYPINNKTRD 883 (1111)
T ss_pred cccccccccccccccccccccccccccccccCCCccceecccccccc---------------------c-ccchhHHHHH
Confidence 0011111100000 000001223333321100 0 0000135899
Q ss_pred HHHHHHHHhhcCcccc-CC-------eeEEEec-------CCeEEEEEEEcCCCCEEEEEEeCCCccEEEeCCC
Q psy15648 508 LYRKLSQLRRTDTMIY-GA-------VSTHILN-------GEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566 (567)
Q Consensus 508 ~~~~L~~lRk~~~~l~-g~-------~~~~~~~-------~~~vl~~~R~~~~~~~~~vv~N~~~~~~~~~l~~ 566 (567)
++|.||+|||++|+|+ +. ..++... ...|++|.-....++.++|++|.+..++++.|+.
T Consensus 884 y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~~~~~~lp~ 957 (1111)
T TIGR02102 884 YTAGLIELRRSTDAFRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADDKARTLTLGE 957 (1111)
T ss_pred HHHHHHHHHhcCccccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCCCCEEEECCC
Confidence 9999999999999982 22 2222111 2468888765434468999999999999998874
No 55
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.20 E-value=1.2e-11 Score=134.87 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=89.4
Q ss_pred eeccCCCCCcccccCCch----------HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCC
Q psy15648 224 WVYDNHDNPRVTNRLGKE----------LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRD 293 (567)
Q Consensus 224 ~fl~nHD~~R~~~~~~~~----------~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d 293 (567)
..|++||+.|+.+.+.+. ..++..+++||+||+|+||||+|+++.+. .|
T Consensus 618 ~lLds~dt~rfL~~~~~~~~~i~~~G~~nsLsq~lLklT~PGvPdIYqGtE~wd~sl---------------------vD 676 (825)
T TIGR02401 618 AVLDPPAGSLFLTDFVAREKKLIPAGLQNSLSQTLLKLTAPGVPDIYQGTEFWDLSL---------------------VD 676 (825)
T ss_pred HHcCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCcccccccccccCC---------------------CC
Confidence 368999999998877543 45777889999999999999999999987 56
Q ss_pred C-CCCCcccCCCCCCCCCCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-c-cccCceEEeecC---CC
Q psy15648 294 P-ERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-T-MIYGAVSTHILN---GE 367 (567)
Q Consensus 294 ~-~r~pm~W~~~~~~gf~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-a-l~~G~~~~~~~~---~~ 367 (567)
| +|+||+|+..... .......+. ..+.....+....+.++++|++||+++ + |..|++..+... .+
T Consensus 677 PDNRRpvd~~~r~~~-L~~l~~~~~--------~~l~~~~~dg~~Kl~~i~~lL~lRr~~p~lF~~G~y~pL~~~G~~~~ 747 (825)
T TIGR02401 677 PDNRRPVDYAARRAA-LLQLTTPNW--------SELELWLLDGLVKLAVTAAALQLRREHPELFGQGDYQPLEAGGPGAA 747 (825)
T ss_pred CCccCCCChHHHHHH-HHhhhcccc--------hhhhccccccHHHHHHHHHHHHHHHhCHHhhhcCCeEEEeccCCCcC
Confidence 7 9999999743110 000000000 001112234556789999999999998 4 689999988763 36
Q ss_pred cEEEEeccccc
Q psy15648 368 WVLGLSRAANM 378 (567)
Q Consensus 368 ~v~~f~R~~~~ 378 (567)
.|++|.|...+
T Consensus 748 ~vvaFaR~~~~ 758 (825)
T TIGR02401 748 HVIAFARGTDR 758 (825)
T ss_pred cEEEEEEecCC
Confidence 89999998653
No 56
>PLN00196 alpha-amylase; Provisional
Probab=99.14 E-value=1.8e-10 Score=119.38 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=78.8
Q ss_pred hhhceeecccCCCCccccccCC--HHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCC
Q psy15648 385 RERAKFEAYDNHDNPRVTNRLG--KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPE 462 (567)
Q Consensus 385 ~~~~~v~~l~nHD~~R~~~~~~--~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~ 462 (567)
.+...+++++|||++|+.+... .+.+++|.+++||+||+||||||+=+
T Consensus 302 ~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG~P~IyYg~~~------------------------------ 351 (428)
T PLN00196 302 WPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGNPCIFYDHFF------------------------------ 351 (428)
T ss_pred ChhhceeeccCCCCccccccCCCccchHHHHHHHHHcCCCcceEeeCCCc------------------------------
Confidence 4556789999999999987653 34679999999999999999999511
Q ss_pred CcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cCCeeEEEecCCeEEEEEE
Q psy15648 463 RTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSR 541 (567)
Q Consensus 463 r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g~~~~~~~~~~~vl~~~R 541 (567)
+|. ..+.+++|+++||.++++ .|.+..+..+ ++++++.|
T Consensus 352 ----~~~-----------------------------------~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~-~d~yv~~~ 391 (428)
T PLN00196 352 ----DWG-----------------------------------LKEEIAALVSIRNRNGITPTSELRIMEAD-ADLYLAEI 391 (428)
T ss_pred ----Ccc-----------------------------------HHHHHHHHHHHHHhCCCcCCccEEEEEec-CCEEEEEE
Confidence 231 457899999999999998 6777766554 56999999
Q ss_pred EcCCCCEEEEEEeCC
Q psy15648 542 SMPGNDTYIVLINFN 556 (567)
Q Consensus 542 ~~~~~~~~~vv~N~~ 556 (567)
+++++|.+|..
T Consensus 392 ----~~~~~~~i~~~ 402 (428)
T PLN00196 392 ----DGKVIVKIGSR 402 (428)
T ss_pred ----CCEEEEEECCC
Confidence 35899999885
No 57
>KOG2212|consensus
Probab=99.10 E-value=5.1e-10 Score=106.88 Aligned_cols=160 Identities=22% Similarity=0.265 Sum_probs=92.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHH
Q psy15648 57 KQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVK 136 (567)
Q Consensus 57 ~~pdLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (567)
++-|||..+.-||..|++-+...+++||.|||+||++||+.. ++..++..
T Consensus 182 GL~DL~Q~s~~Vr~Kive~L~hLidlGVAGFRvDAsKHMwp~------------------------------Di~~I~~~ 231 (504)
T KOG2212|consen 182 GLLDLAQGSDYVRSKIAEYLNHLIDIGVAGFRVDASKHMWPG------------------------------DIKAILDK 231 (504)
T ss_pred ecchhhhcchHHHHHHHHHHHHHHHhccceeeechhhccChH------------------------------HHHHHHHH
Confidence 677999999999999999999999999999999999999321 12223333
Q ss_pred HHHHHHH-HhhhcCCceEEEEeccCC---HHHHhhhhccCCCCCCCcccccccccCCCCCcchHHHhhhhhhhHhHHHHH
Q psy15648 137 WRALVDE-YKQKTGHTRILIVESYTD---IENTMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQF 212 (567)
Q Consensus 137 ~r~~~~~-~~~~~~~~~~ligE~~~~---~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (567)
++.+... + ..+...+++-|+.+. +-....|++ ..-.-.|.+-..+........ .-+.+..|
T Consensus 232 l~nLnsD~f--~s~srpfi~qEVID~GgE~v~~~dY~g------~G~~TeF~f~~~ig~~~r~~~-------~~kyL~nw 296 (504)
T KOG2212|consen 232 LHNLNSDWF--PSGSKPFIYQEVIDLGGEPIKSSDYFG------NGRVTEFKFGAKLGTVIRKWN-------KMKYLKNW 296 (504)
T ss_pred Hhhcccccc--cCCCCceehhhhhhcCCceeecccccC------CceeeeeechHHHHHHHhcch-------hHHHHHhc
Confidence 3222110 1 223446677776642 112223443 222223333222211110000 02233333
Q ss_pred HHhC--CCCCCceeeccCCCCCccccc--------CCchHHHHHHHHHHhCC-Cceeeec
Q psy15648 213 KDNL--PAEGTSNWVYDNHDNPRVTNR--------LGKELADAYLMISLLMP-GVGVTYY 261 (567)
Q Consensus 213 ~~~~--~~~~~~~~fl~nHD~~R~~~~--------~~~~~~~~a~a~ll~~p-G~P~iYy 261 (567)
-... .......+|++|||+.|=... -.+++.++|.++||..| |+|=+.-
T Consensus 297 G~~wGf~~s~~~L~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMS 356 (504)
T KOG2212|consen 297 GEGWGFMPSDRALVFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMS 356 (504)
T ss_pred CCccCcCCCcceEEEeccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhhe
Confidence 2221 122345569999999885543 23447899999999999 8876543
No 58
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.09 E-value=4e-10 Score=122.40 Aligned_cols=121 Identities=16% Similarity=0.220 Sum_probs=87.1
Q ss_pred cccCCCC-----ccccccCCHH------HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCC
Q psy15648 392 AYDNHDN-----PRVTNRLGKE------LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRD 460 (567)
Q Consensus 392 ~l~nHD~-----~R~~~~~~~~------~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~ 460 (567)
+..|||. .++..++..+ .+|++++++++.||.|+||||+|+|....+
T Consensus 524 lp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew---------------------- 581 (730)
T PRK12568 524 LPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADW---------------------- 581 (730)
T ss_pred ccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccc----------------------
Confidence 3458888 4555554221 578999999999999999999999987643
Q ss_pred CCCcccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-c-----CCeeEEEec--
Q psy15648 461 PERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-Y-----GAVSTHILN-- 532 (567)
Q Consensus 461 ~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~-----g~~~~~~~~-- 532 (567)
....+++|..... ...+.+.+++|.|++||+++|+| . .+++.+..+
T Consensus 582 ~~~~~ldW~ll~~--------------------------~~h~~~~~~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~d~ 635 (730)
T PRK12568 582 NHDQSLDWHLLDG--------------------------ARHRGMQQLVGDLNAALRRTPALYRGTHRADGFDWSVADDA 635 (730)
T ss_pred cCCCCccccccCC--------------------------hhHHHHHHHHHHHHHHHHhChhhhcccCCCCCeEEEeCCCC
Confidence 1235678875321 01344899999999999999999 2 234444443
Q ss_pred CCeEEEEEEEcCC--CCEEEEEEeCCCccE
Q psy15648 533 GEWVLGLSRSMPG--NDTYIVLINFNSIIE 560 (567)
Q Consensus 533 ~~~vl~~~R~~~~--~~~~~vv~N~~~~~~ 560 (567)
+..|++|.|...+ ++.++||+||++.+.
T Consensus 636 ~~sv~af~R~~~~~~~~~v~vV~Nft~~~~ 665 (730)
T PRK12568 636 RNSVLAFIRHDPDGGGVPLLAVSNLTPQPH 665 (730)
T ss_pred CCcEEEEEEecCCCCCCeEEEEECCCCCCc
Confidence 4569999998632 356999999999865
No 59
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.02 E-value=1.3e-09 Score=124.48 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCC
Q psy15648 409 LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNP 488 (567)
Q Consensus 409 ~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~ 488 (567)
.++++++++++.||+|+||||+|+|..... .....++|..-..
T Consensus 1048 ~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew----------------------~~~~~LdW~ll~~--------------- 1090 (1224)
T PRK14705 1048 NLRAFLAYQWAHPGKQLIFMGTEFGQEAEW----------------------SEQHGLDWFLADI--------------- 1090 (1224)
T ss_pred HHHHHHHHHHhcCCcCEEECccccCCCCCc----------------------cccccCCCcccCC---------------
Confidence 578899999999999999999999988753 1235678875221
Q ss_pred CcccccHHHhhcCCCcHHHHHHHHHHHhhcCcccc-C-----CeeEEEec--CCeEEEEEEEcCCCCEEEEEEeCCCccE
Q psy15648 489 NYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIY-G-----AVSTHILN--GEWVLGLSRSMPGNDTYIVLINFNSIIE 560 (567)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~-g-----~~~~~~~~--~~~vl~~~R~~~~~~~~~vv~N~~~~~~ 560 (567)
.....+..++|.|++||+++|+|. . ++..+..+ ++.|++|.|...+++.++||+||++.++
T Consensus 1091 -----------~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~ 1159 (1224)
T PRK14705 1091 -----------PAHRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGGPH 1159 (1224)
T ss_pred -----------hhhHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCCCc
Confidence 013448899999999999999993 2 34433322 4579999998644567999999999876
Q ss_pred E
Q psy15648 561 E 561 (567)
Q Consensus 561 ~ 561 (567)
.
T Consensus 1160 ~ 1160 (1224)
T PRK14705 1160 K 1160 (1224)
T ss_pred c
Confidence 5
No 60
>PLN02960 alpha-amylase
Probab=98.97 E-value=1.7e-09 Score=117.94 Aligned_cols=101 Identities=13% Similarity=0.208 Sum_probs=66.7
Q ss_pred HHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCCCcccc
Q psy15648 414 LMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYL 493 (567)
Q Consensus 414 ~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~ 493 (567)
+++++ .||+||+|||+|+|...- .++.||. ..-.-.+..++|+....
T Consensus 721 lt~~~-~Pg~pLlFMG~EFGh~e~----~~~PdP~--------n~~tf~~s~LdW~Ll~~-------------------- 767 (897)
T PLN02960 721 ITFTL-GGSAYLNFMGNEFGHPER----VEFPRAS--------NNFSFSLANRRWDLLED-------------------- 767 (897)
T ss_pred HHHHh-CCCCCEeeCccccCChhh----hhCcCCC--------CccccccccCCcccccC--------------------
Confidence 44444 489999999999996321 1233442 00011235567765221
Q ss_pred cHHHhhcCCCcHHHHHHHHHHHhhcCccccCCeeEEE--ecCCeEEEEEEEcCCCCEEEEEEeCCCc
Q psy15648 494 NVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHI--LNGEWVLGLSRSMPGNDTYIVLINFNSI 558 (567)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~g~~~~~~--~~~~~vl~~~R~~~~~~~~~vv~N~~~~ 558 (567)
.....+++++|.|++||+++|+|.+...... ..++.||+|.|. .++||+||++.
T Consensus 768 ------~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~-----~llvV~NFsp~ 823 (897)
T PLN02960 768 ------GVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG-----PLLFAFNFHPT 823 (897)
T ss_pred ------hhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC-----CeEEEEeCCCC
Confidence 1134599999999999999999965554443 235579999992 49999999975
No 61
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=98.94 E-value=7.8e-10 Score=121.50 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=71.2
Q ss_pred HHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCC-CCCCcccCCCCC--CCCCCCCCCCCCCC
Q psy15648 244 DAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDP-ERTPMQWDSTKH--AGFSTARKTWLPVN 320 (567)
Q Consensus 244 ~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~-~r~pm~W~~~~~--~gf~~~~~~w~~~~ 320 (567)
....+++||+||+|+||||+|+|+.+. .|| +|+||+|+.... ..... ..++
T Consensus 704 Laq~lLqlT~PGVPdIYqG~E~wd~sl---------------------vDPDNRRpvd~~~r~~~L~~l~~---~~~~-- 757 (879)
T PRK14511 704 LAQTLLKLTSPGVPDVYQGTELWDFSL---------------------VDPDNRRPVDFAARAAALARLDE---GAEL-- 757 (879)
T ss_pred HHHHHHHHCcCCCCcccCcccchhccC---------------------CCCCCCCCCChHHHHHHHhhccc---cccc--
Confidence 334578999999999999999999987 567 999999974210 00000 0000
Q ss_pred CCcccccHHHhhhCCCchHHHHHHHHhccccC-cc-ccCceEEeecC---CCcEEEEeccccc
Q psy15648 321 PNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TM-IYGAVSTHILN---GEWVLGLSRAANM 378 (567)
Q Consensus 321 ~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al-~~G~~~~~~~~---~~~v~~f~R~~~~ 378 (567)
....+....+.++++|+++|+++ +| ..|++..+... .+.+++|.|..++
T Consensus 758 ---------~~~~dg~~kl~~~~~lL~lRr~~p~Lf~~G~y~pL~~~G~~a~~v~AFaR~~~~ 811 (879)
T PRK14511 758 ---------LPWDDGRIKLLLIARALRLRRDRPELFAGGEYLPLEVSGPHAGHVLAFARGGGG 811 (879)
T ss_pred ---------ccCCcchHHHHHHHHHHHHHHhCHHHhhCCceEEEEecCCCCCcEEEEEEecCC
Confidence 01123344689999999999998 77 57999998773 3679999997643
No 62
>KOG0470|consensus
Probab=98.87 E-value=7.1e-09 Score=109.25 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=38.6
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCC
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFK 102 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~ 102 (567)
--+|+.+|+|+++|++.+++|+. ++|||||+|.+.+|......+
T Consensus 370 r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~ 414 (757)
T KOG0470|consen 370 RLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGN 414 (757)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhcccc
Confidence 35899999999999999999998 699999999999997755444
No 63
>PLN02361 alpha-amylase
Probab=98.86 E-value=1.2e-08 Score=104.67 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=70.9
Q ss_pred hhceeecccCCCCccccccCC--HHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCC
Q psy15648 386 ERAKFEAYDNHDNPRVTNRLG--KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPER 463 (567)
Q Consensus 386 ~~~~v~~l~nHD~~R~~~~~~--~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r 463 (567)
+...|.+++|||++|+.+... .+++++|.+++||.||+||||||+=+
T Consensus 277 p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~~------------------------------- 325 (401)
T PLN02361 277 PSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHFY------------------------------- 325 (401)
T ss_pred hhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeecccc-------------------------------
Confidence 455788999999999877543 45788899999999999999999711
Q ss_pred cccccCCCCCCCcCCCCCCcCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc-cCCeeEEEecCCeEEEEEEE
Q psy15648 464 TPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSRS 542 (567)
Q Consensus 464 ~~~~W~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l-~g~~~~~~~~~~~vl~~~R~ 542 (567)
+|+ .++.+.+++|++|||.++.+ .|.+..+...+ .+++-.-
T Consensus 326 ---~~~---------------------------------~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~-~~y~a~i- 367 (401)
T PLN02361 326 ---DWG---------------------------------GSIHDQIVKLIDIRKRQDIHSRSSIRILEAQS-NLYSAII- 367 (401)
T ss_pred ---CCC---------------------------------hHHHHHHHHHHHHHHhCCCCCCCcEEEEEecC-CeEEEEE-
Confidence 232 12789999999999999998 67777666554 3444332
Q ss_pred cCCCCEEEEEEeC
Q psy15648 543 MPGNDTYIVLINF 555 (567)
Q Consensus 543 ~~~~~~~~vv~N~ 555 (567)
+++++|=+..
T Consensus 368 ---~~~~~~k~g~ 377 (401)
T PLN02361 368 ---DEKLCMKIGD 377 (401)
T ss_pred ---CCeEEEEecC
Confidence 1345555543
No 64
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=98.84 E-value=2.1e-09 Score=108.55 Aligned_cols=52 Identities=38% Similarity=0.694 Sum_probs=47.2
Q ss_pred hhceeecccCCCCccccccCCHH--HHHHHHHHHHhCCCceeeeccccccCCCC
Q psy15648 386 ERAKFEAYDNHDNPRVTNRLGKE--LADAYLMISLLMPGVGVTYYGDEIGMEGP 437 (567)
Q Consensus 386 ~~~~v~~l~nHD~~R~~~~~~~~--~~~~~~~l~l~~pG~P~iy~G~E~g~~~~ 437 (567)
....+++++|||+.|+.+.++.. +++++++++||+||+|+||||||+||.+.
T Consensus 260 ~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 260 PYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMIYYGDEIGMTGS 313 (316)
T ss_dssp GGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEEETTGGGTBBTS
T ss_pred cceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEEEeChhccCCCC
Confidence 45688999999999999988765 58999999999999999999999999986
No 65
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=98.67 E-value=8.2e-08 Score=101.17 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=84.9
Q ss_pred cccccCCch--HHHHHHHHHHh----CCCceeeecc--------------ccccCCCCCCCCCcccCccccCCCCCCCCC
Q psy15648 233 RVTNRLGKE--LADAYLMISLL----MPGVGVTYYG--------------DEIGMEGPLVRNDERRDPNNAGGARADETR 292 (567)
Q Consensus 233 R~~~~~~~~--~~~~a~a~ll~----~pG~P~iYyG--------------~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~ 292 (567)
|++....++ +.+.+.++|++ +||+|+|||| +|+||.+..
T Consensus 477 rLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~--------------------- 535 (688)
T TIGR02455 477 DLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTR--------------------- 535 (688)
T ss_pred cchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccc---------------------
Confidence 344444433 57888899999 9999999999 888888651
Q ss_pred CCCCCCcccCCCCCCCCCCCC----CC----CCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEEee
Q psy15648 293 DPERTPMQWDSTKHAGFSTAR----KT----WLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVSTHI 363 (567)
Q Consensus 293 d~~r~pm~W~~~~~~gf~~~~----~~----w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~~~ 363 (567)
|- .++||+... +. -+|.. ....-||++|..++.|+++..++++++|+++ ++..|.+..+.
T Consensus 536 --------wl--~rggfs~~~~~p~~~~s~~~lP~~-~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~ 604 (688)
T TIGR02455 536 --------WI--HRGGYDLADLAPEAEASAEGLPKA-RALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPD 604 (688)
T ss_pred --------cc--cCCCcccCCCCchhhhccCCCCCC-cCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecC
Confidence 11 144554432 11 33432 2122299999999999999999999999999 99999999888
Q ss_pred cCCCcEEEEeccccc
Q psy15648 364 LNGEWVLGLSRAANM 378 (567)
Q Consensus 364 ~~~~~v~~f~R~~~~ 378 (567)
.++..|+++.+...+
T Consensus 605 ~~~~gvLa~v~~l~~ 619 (688)
T TIGR02455 605 VQAPGLLVMVHELPA 619 (688)
T ss_pred CCCCcEEEEEEEcCC
Confidence 878999999998653
No 66
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.58 E-value=9.6e-08 Score=77.07 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCccc-cCCeeEEE---ecCCeEEEEEEEcCCCCEEEEEEeCCCccEEEe
Q psy15648 508 LYRKLSQLRRTDTMI-YGAVSTHI---LNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVD 563 (567)
Q Consensus 508 ~~~~L~~lRk~~~~l-~g~~~~~~---~~~~~vl~~~R~~~~~~~~~vv~N~~~~~~~~~ 563 (567)
+||+||+|||++|+| .|....+. ..+..++++.|.. ++++++|++|||+++++++
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~-~~~~l~v~~Nls~~~~~~~ 59 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTG-GGERLLVAFNLSDEPVTVP 59 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEE-TTEEEEEEEE-SSS-EEEE
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEc-CCceEEEEEecCCCcEEcc
Confidence 699999999999999 55555444 3456677788876 7889999999999999887
No 67
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=98.56 E-value=5.5e-08 Score=101.03 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=72.4
Q ss_pred CcccccCCch--HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCC
Q psy15648 232 PRVTNRLGKE--LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGF 309 (567)
Q Consensus 232 ~R~~~~~~~~--~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf 309 (567)
-|+.+.++++ +..+|.++||++||||.||||+|+|+.+.. .... +...+|+-+|..+
T Consensus 337 ~t~~~aL~~~~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~---------~~~~--rt~~~R~Inr~~~---------- 395 (470)
T TIGR03852 337 CTYYSALGDDDQAYLLARAIQFFAPGIPQVYYVGLLAGKNDI---------ELLE--ETKEGRNINRHYY---------- 395 (470)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHcCCCCceEEechhhcCCchH---------HHHH--hcCCCCCCCCCCC----------
Confidence 3455555543 577888999999999999999999998752 0000 0001233233322
Q ss_pred CCCCCCCCCCCCCcccccHHHhhhCCCchHHHHHHHHhccccC-cccc-CceEEeecCCCcEEEEeccccc
Q psy15648 310 STARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIY-GAVSTHILNGEWVLGLSRAANM 378 (567)
Q Consensus 310 ~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~-G~~~~~~~~~~~v~~f~R~~~~ 378 (567)
.+..++++.|.. ++.-..+||++|+++ ||.. |.+..... ++.++++.|...+
T Consensus 396 ------------~~~~i~~~l~~~----v~~~L~~li~~R~~~~aF~~~g~~~~~~~-~~~~~~~~r~~~~ 449 (470)
T TIGR03852 396 ------------TLEEIAEEVKRP----VVAKLLNLLRFRNTSKAFDLDGSIDIETP-SENQIEIVRTNKD 449 (470)
T ss_pred ------------CHHHHHHHHhhH----HHHHHHHHHHHHhhCcccCCCCceEecCC-CCcEEEEEEEcCC
Confidence 234455555554 555555599999998 9986 88885555 8899999997654
No 68
>PLN03244 alpha-amylase; Provisional
Probab=98.36 E-value=2.1e-06 Score=92.57 Aligned_cols=107 Identities=14% Similarity=0.324 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCCce-eeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCC
Q psy15648 409 LADAYLMISLLMPGVG-VTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVN 487 (567)
Q Consensus 409 ~~~~~~~l~l~~pG~P-~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~ 487 (567)
.-|++.++++++||.| ++|||.|+|..... .-|... ...+. .-...+|+-.+.
T Consensus 689 LhKMiRllt~~~~G~kkLnFMGNEFGhpe~~------dfPr~g----N~~s~--~~arrdW~Lld~-------------- 742 (872)
T PLN03244 689 LHKMIRLITFTIGGHAYLNFMGNEFGHPERI------EFPMPS----NNFSF--SLANRCWDLLEN-------------- 742 (872)
T ss_pred HHHHHHHHHHHccCccceeecccccCCchhe------eccccC----CCccc--cccccCccccCC--------------
Confidence 3466667889999998 79999999986531 111100 00000 012346654211
Q ss_pred CCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccccCCeeEEEe--cCCeEEEEEEEcCCCCEEEEEEeCCCc
Q psy15648 488 PNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHIL--NGEWVLGLSRSMPGNDTYIVLINFNSI 558 (567)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~g~~~~~~~--~~~~vl~~~R~~~~~~~~~vv~N~~~~ 558 (567)
...+.+.+++|.|++|++++++|.+++..+.. .++.||||.|. .++||+||++.
T Consensus 743 ------------~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~-----~LLfVfNF~P~ 798 (872)
T PLN03244 743 ------------EVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG-----PFLFIFNFHPS 798 (872)
T ss_pred ------------hhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-----CEEEEEeCCCC
Confidence 01344899999999999999999665544443 35679999994 49999999974
No 69
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=98.17 E-value=2.4e-06 Score=91.22 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=49.3
Q ss_pred hhceeecccCCCCc-----cccccC------CHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCC
Q psy15648 386 ERAKFEAYDNHDNP-----RVTNRL------GKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPN 448 (567)
Q Consensus 386 ~~~~v~~l~nHD~~-----R~~~~~------~~~~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~ 448 (567)
.+..+.++.|||+- .+..++ ....++++++++++.||+|+||||+|+|...++..++++.++.
T Consensus 413 ~se~~~l~~sHDevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~ 486 (628)
T COG0296 413 FSENVVLPLSHDEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLL 486 (628)
T ss_pred cceeEeccccccceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhh
Confidence 34467778899984 122222 3347899999999999999999999999999998888877765
No 70
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=98.15 E-value=8.1e-06 Score=89.54 Aligned_cols=107 Identities=14% Similarity=0.242 Sum_probs=70.4
Q ss_pred HHHHHHHHhCCCc-eeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCCC
Q psy15648 411 DAYLMISLLMPGV-GVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489 (567)
Q Consensus 411 ~~~~~l~l~~pG~-P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~ 489 (567)
|++.++++++||. +++|||.|+|... .+. .|.. +..=.-...+.+|+-.+.
T Consensus 554 kmirl~~~~~pG~g~L~FMGnEFg~~e-w~D-----fpr~------~n~ws~~~~~~~W~L~d~---------------- 605 (758)
T PLN02447 554 KMIRLITMALGGEGYLNFMGNEFGHPE-WID-----FPRE------GNGWSYDKCRRRWDLADA---------------- 605 (758)
T ss_pred HHHHHHHHhCCCCcceeecccccCCch-hcc-----Cccc------ccccCcccccCCccccCC----------------
Confidence 5666789999999 6999999999862 111 1210 000000123456764211
Q ss_pred cccccHHHhhcCCCcHHHHHHHHHHHhhcCccccCCeeEEEe--cCCeEEEEEEEcCCCCEEEEEEeCCCc
Q psy15648 490 YYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHIL--NGEWVLGLSRSMPGNDTYIVLINFNSI 558 (567)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~g~~~~~~~--~~~~vl~~~R~~~~~~~~~vv~N~~~~ 558 (567)
.....+.+.+|+|.|++|++++|+|.++...+.. .++.||+|.|. .++||+||++.
T Consensus 606 --------~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~-----~ll~V~NF~p~ 663 (758)
T PLN02447 606 --------DHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERG-----DLVFVFNFHPT 663 (758)
T ss_pred --------CchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeC-----CeEEEEeCCCC
Confidence 0001345899999999999999999665555543 45689999993 39999999973
No 71
>PRK13840 sucrose phosphorylase; Provisional
Probab=98.05 E-value=4e-06 Score=87.96 Aligned_cols=98 Identities=20% Similarity=0.158 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCcccCccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy15648 242 LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNP 321 (567)
Q Consensus 242 ~~~~a~a~ll~~pG~P~iYyG~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~d~~r~pm~W~~~~~~gf~~~~~~w~~~~~ 321 (567)
+..++.+++|++||||.||||+|+|..+...-.++ ...+|+-+|..+.|+..
T Consensus 359 r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~-----------t~~~R~inR~~~~~~~~----------------- 410 (495)
T PRK13840 359 DYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLAR-----------TNVGRDINRHYYSTAEI----------------- 410 (495)
T ss_pred HHHHHHHHHHcCCCcceeeechhhccCccHHHHHh-----------cCCCcccCCCCCCHHHH-----------------
Confidence 67888899999999999999999998875210000 12357778888877643
Q ss_pred CcccccHHHhhhCCCchHHHHHHHHhccccC-ccccCceEEeecCCCcEEEEeccccc
Q psy15648 322 NYYYLNVEAQKKADWSTYKLYRKLSQLRRTD-TMIYGAVSTHILNGEWVLGLSRAANM 378 (567)
Q Consensus 322 ~~~~~~v~~q~~d~~sl~~~~k~Li~lR~~~-al~~G~~~~~~~~~~~v~~f~R~~~~ 378 (567)
+++.. ..+++-+++||++|+++ || .|+++.... ++..+...|..+.
T Consensus 411 -------~~~l~--~~v~~~l~~li~~R~~~~aF-~~~~~~~~~-~~~~~~~~~~~~~ 457 (495)
T PRK13840 411 -------DEALE--RPVVKALNALIRFRNEHPAF-DGAFSYAAD-GDTSLTLSWTAGD 457 (495)
T ss_pred -------HHHHH--HHHHHHHHHHHHHHhcCccc-CceEEEecC-CCCeEEEEEecCC
Confidence 22232 34899999999999998 88 688877555 6666777766543
No 72
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.84 E-value=5.4e-05 Score=79.74 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=30.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh----------CCCCeeEecccCcc
Q psy15648 60 DLNFRSKKLQEAMEAVLRFWLD----------KGIDGWRIDALKHM 95 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~~~Wl~----------~GVDGfRlD~~~~l 95 (567)
|++=+||.|+.+-+.++-|.+. ..+||||+|||..+
T Consensus 145 DVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV 190 (809)
T PF02324_consen 145 DVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV 190 (809)
T ss_dssp EE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS
T ss_pred cccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc
Confidence 8888999999999999999885 47999999999999
No 73
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=97.82 E-value=7e-05 Score=81.60 Aligned_cols=114 Identities=22% Similarity=0.212 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCC
Q psy15648 409 LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNP 488 (567)
Q Consensus 409 ~~~~~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~ 488 (567)
..+...+.+|++.|+||+-.|||+|-+.... ...|+.++ .-+-++|+.
T Consensus 521 ~~~~~~~tlllsqG~pml~~gDe~~rtq~gn-nNsYcqdn-------------~inwlDW~~------------------ 568 (697)
T COG1523 521 QRTNLLATLLLSQGTPMLLAGDEFGRTQYGN-NNAYCQDN-------------EINWLDWST------------------ 568 (697)
T ss_pred HHHHHHHHHHhhcCCcccccccccccccccc-cccccCCc-------------ccceeccCc------------------
Confidence 3455566678999999999999999854321 11222222 335566751
Q ss_pred CcccccHHHhhcCCCcHHHHHHHHHHHhhcCccccC-CeeE-------EE-e------------c--CCeEEEEEEEcCC
Q psy15648 489 NYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYG-AVST-------HI-L------------N--GEWVLGLSRSMPG 545 (567)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l~g-~~~~-------~~-~------------~--~~~vl~~~R~~~~ 545 (567)
.....++++.++||+|||++|+|+. .+.. +. + . ....+++.... .
T Consensus 569 -----------~~~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~-~ 636 (697)
T COG1523 569 -----------EANNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDG-D 636 (697)
T ss_pred -----------cccHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhcccCCCCceEEEEecC-C
Confidence 1134599999999999999999822 1111 00 0 0 13455555543 3
Q ss_pred CCEEEEEEeCCCccEEEeCCC
Q psy15648 546 NDTYIVLINFNSIIEEVDLSV 566 (567)
Q Consensus 546 ~~~~~vv~N~~~~~~~~~l~~ 566 (567)
.++++|++|....++.+.++.
T Consensus 637 ~~~~lv~~N~~~~~~~~~lp~ 657 (697)
T COG1523 637 KERLLVLINATAEPVEFELPE 657 (697)
T ss_pred CccEEEEecCCccccceeccc
Confidence 678999999888887776653
No 74
>PLN02877 alpha-amylase/limit dextrinase
Probab=97.35 E-value=0.00011 Score=82.46 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=51.7
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHH
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKW 137 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (567)
.+.+.+++.||++|+|+++||++ +||||||||+++++.+ +.+.++
T Consensus 527 n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~----------------------------------~tm~~~ 572 (970)
T PLN02877 527 NNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMK----------------------------------RTMVRA 572 (970)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccH----------------------------------HHHHHH
Confidence 45677889999999999999997 7999999999999922 233444
Q ss_pred HHHHHHHhh----hcCCceEEEEeccC
Q psy15648 138 RALVDEYKQ----KTGHTRILIVESYT 160 (567)
Q Consensus 138 r~~~~~~~~----~~~~~~~ligE~~~ 160 (567)
++.++++.. .+++.++++||.|.
T Consensus 573 ~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 573 KDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 444444421 23578999999996
No 75
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=97.31 E-value=0.00015 Score=81.42 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=59.2
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHH
Q psy15648 57 KQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILV 135 (567)
Q Consensus 57 ~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (567)
+-.+++.+||+||++|+++++||++ +||||||||+++++ ..++|+
T Consensus 462 ~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~----------------------------------~~~f~~ 507 (898)
T TIGR02103 462 CCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHH----------------------------------PKAQML 507 (898)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhC----------------------------------CHHHHH
Confidence 3457899999999999999999996 79999999999999 345889
Q ss_pred HHHHHHHHHhhhcCCceEEEEeccC
Q psy15648 136 KWRALVDEYKQKTGHTRILIVESYT 160 (567)
Q Consensus 136 ~~r~~~~~~~~~~~~~~~ligE~~~ 160 (567)
++++.+++. +|+++++||.|.
T Consensus 508 ~~~~~l~~i----~pdi~l~GEgW~ 528 (898)
T TIGR02103 508 AAREAIKAL----TPEIYFYGEGWD 528 (898)
T ss_pred HHHHHHHHh----CCCEEEEecCCC
Confidence 999888888 899999999996
No 76
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=97.25 E-value=0.00095 Score=79.32 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=69.1
Q ss_pred HHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCC------CCCcCCCCCCcCCCC
Q psy15648 414 LMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTK------HAGFSTARKTWLPVN 487 (567)
Q Consensus 414 ~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~------~~~f~~~~~~~~~~~ 487 (567)
..|-||+||||=||+|.|+=-- ..-||+ +|+|.++.... ..+.......-+
T Consensus 1500 ~lLklt~PGVPD~YQG~E~wd~-------SLVDPD-------------NRRPVDf~~r~~~L~~l~~~~~~~~~~~~--- 1556 (1693)
T PRK14507 1500 TLLKLTLPGVPDTYQGTEFWDF-------SLVDPD-------------NRRPVDYAARARALEALGAMHAEGGHAAC--- 1556 (1693)
T ss_pred HHHHHcCCCCCcccCCcccccc-------cCcCCC-------------CCCCCCHHHHHHHHHhhhhcccccccccc---
Confidence 4456999999999999997322 236898 89999886310 000000000000
Q ss_pred CCcccccHHHhhcCCCcHHHHHHHHHHHhhcCccc--cCCeeEEEec---CCeEEEEEEEcCCCCEEEEEE
Q psy15648 488 PNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI--YGAVSTHILN---GEWVLGLSRSMPGNDTYIVLI 553 (567)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l--~g~~~~~~~~---~~~vl~~~R~~~~~~~~~vv~ 553 (567)
.. ..-..-.+..--+..+.+++++|+++|.| .|++.-+... .+.|++|.|.. ++..++||+
T Consensus 1557 --~~--~l~~~~~dG~iKl~l~~~~L~lRr~~p~lF~~G~Y~PL~~~G~~~~hv~AFaR~~-~~~~~vvvv 1622 (1693)
T PRK14507 1557 --PD--ALLGSWQDGRIKLAVLWRLLADRRARPALFRDGDYRPLKAEGARAEHVVAFARRR-GGDDLVVAV 1622 (1693)
T ss_pred --hh--hhhccCCCchHHHHHHHHHHHHHHhChhhhccCCeeEEeccCCccccEEEEEecC-CCcEEEEEE
Confidence 00 00011122333567789999999999988 6888766664 35799999987 566666654
No 77
>PLN02784 alpha-amylase
Probab=97.20 E-value=0.0012 Score=72.93 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=34.2
Q ss_pred eeecccCCCCcccccc--CCHHHHHHHHHHHHhCCCceeeeccccc
Q psy15648 389 KFEAYDNHDNPRVTNR--LGKELADAYLMISLLMPGVGVTYYGDEI 432 (567)
Q Consensus 389 ~v~~l~nHD~~R~~~~--~~~~~~~~~~~l~l~~pG~P~iy~G~E~ 432 (567)
.|.|++|||+.+..+. .......+|.|++||.||+||||||+=+
T Consensus 773 AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~PcVFy~h~y 818 (894)
T PLN02784 773 AVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTPAVFYDHIF 818 (894)
T ss_pred eEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCCcceEEehhhh
Confidence 5789999999875432 2233567789999999999999999854
No 78
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=96.98 E-value=0.0075 Score=63.56 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=52.2
Q ss_pred CccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHH
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWR 138 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 138 (567)
-|||+.||.||.-+.+.-+.=++.|+||+|+|.+.-. .+.+ . + +......-.+|.++.
T Consensus 357 Qdlnhq~P~VRAILLEmQRRK~n~GaDGIRVDGgQDF----k~fn----p----------l----t~~ve~DD~YL~~M~ 414 (811)
T PF14872_consen 357 QDLNHQNPVVRAILLEMQRRKINTGADGIRVDGGQDF----KFFN----P----------L----TGRVEYDDAYLLAMS 414 (811)
T ss_pred ccccccChHHHHHHHHHHHhhcccCCceeEecccccc----eeec----c----------c----ccccccchHHHHHHH
Confidence 3899999999999999999888899999999987655 1111 0 0 000111235788888
Q ss_pred HHHHHHhhhcCCceEEEEecc
Q psy15648 139 ALVDEYKQKTGHTRILIVESY 159 (567)
Q Consensus 139 ~~~~~~~~~~~~~~~ligE~~ 159 (567)
.++.++... ....++|-|..
T Consensus 415 dvvQ~I~~~-~r~~f~IfEDG 434 (811)
T PF14872_consen 415 DVVQEIGGA-RRLPFTIFEDG 434 (811)
T ss_pred HHHhhcccc-ceeEEEEecCC
Confidence 877776211 22467777754
No 79
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.0026 Score=68.11 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=65.3
Q ss_pred HHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCCccCCCCCccCCCCCCcccccCCCCCCCcCCCCCCcCCCCCCccc
Q psy15648 413 YLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYY 492 (567)
Q Consensus 413 ~~~l~l~~pG~P~iy~G~E~g~~~~~~~~~~~~dp~~~~~~~~~~~r~~~r~~~~W~~~~~~~f~~~~~~~~~~~~~~~~ 492 (567)
...+-||.||||=||+|.|.=- ...-||+ +|+|.+...-.. --+ -+.+.++
T Consensus 711 q~LlkltaPGVPD~YQGtE~wd-------~SLVDPD-------------NRRpVDf~~~~~--~L~-----~lq~~~~-- 761 (889)
T COG3280 711 QTLLKLTAPGVPDIYQGTELWD-------FSLVDPD-------------NRRPVDFATRAQ--ALK-----ALQEGDF-- 761 (889)
T ss_pred HHHHHHcCCCCCccccchhhhh-------ccccCCC-------------CCCCCcHHHHHH--HHh-----cCCCCch--
Confidence 3445699999999999999621 2246887 777776542100 000 0000000
Q ss_pred ccHHHhhcCCCcHHHHHHHHHHHhhcCccc--cCCeeEEEecC---CeEEEEEEEcCCCCEEEEEEe
Q psy15648 493 LNVEAQKKADWSTYKLYRKLSQLRRTDTMI--YGAVSTHILNG---EWVLGLSRSMPGNDTYIVLIN 554 (567)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~L~~lRk~~~~l--~g~~~~~~~~~---~~vl~~~R~~~~~~~~~vv~N 554 (567)
+...+..+. --.....+++++|+++|.+ .|.+.-+...+ +.|++|.|.. .++..++|++
T Consensus 762 -~l~~~~~Dg-~K~~v~~~aL~lR~~~~elF~~GdY~Pl~~~G~~a~hviAFaR~~-~~~~~i~v~P 825 (889)
T COG3280 762 -ELLEHWLDG-IKQAVTAAALRLRREHPELFAGGDYLPLFAAGPAADHVIAFARGK-DDQFAITVAP 825 (889)
T ss_pred -hHHHHhhhh-HHHHHHHHHHHHHHhchHhhcCCCeeeecccCchhHHHHHHhhcc-CCceeEEeeh
Confidence 011111112 1233568899999999876 56666555444 6799999987 6677777665
No 80
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=96.10 E-value=0.0089 Score=46.15 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=28.6
Q ss_pred EEecCCeEEEEEEEcCCCCEEEEEEeCCCccEEEeCCC
Q psy15648 529 HILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566 (567)
Q Consensus 529 ~~~~~~~vl~~~R~~~~~~~~~vv~N~~~~~~~~~l~~ 566 (567)
+..+.++|++|.|.. ++++++||+|.+++++++++..
T Consensus 4 hf~P~~gvYvYfR~~-~~~tVmVilN~n~~~~~ldl~r 40 (78)
T PF10438_consen 4 HFAPQDGVYVYFRYY-DGKTVMVILNKNDKEQTLDLKR 40 (78)
T ss_dssp E---BTTEEEEEEEE-SSEEEEEEEE-SSS-EEEEGGG
T ss_pred eECccCCEEEEEEEc-CCCEEEEEEcCCCCCeEEcHHH
Confidence 345567899999998 8999999999999999998863
No 81
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=95.56 E-value=0.025 Score=67.70 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=33.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHhC-CCCeeEecccCccccCCC
Q psy15648 61 LNFRSKKLQEAMEAVLRFWLDK-GIDGWRIDALKHMFEAGD 100 (567)
Q Consensus 61 LN~~np~vr~~i~~~~~~Wl~~-GVDGfRlD~~~~l~~~~~ 100 (567)
|..++|+|-+..-..+.-|++. -|||.|+|.+..+.++..
T Consensus 1044 lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~ 1084 (1693)
T PRK14507 1044 LRMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAG 1084 (1693)
T ss_pred eeccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHH
Confidence 4445799999999999999997 799999999999876543
No 82
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=95.01 E-value=0.052 Score=48.43 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhcCcccc-CC-------eeEEEec---CCeEEEEEEEcC---------CCCEEEEEEeCCCccEEEeC
Q psy15648 505 TYKLYRKLSQLRRTDTMIY-GA-------VSTHILN---GEWVLGLSRSMP---------GNDTYIVLINFNSIIEEVDL 564 (567)
Q Consensus 505 ~~~~~~~L~~lRk~~~~l~-g~-------~~~~~~~---~~~vl~~~R~~~---------~~~~~~vv~N~~~~~~~~~l 564 (567)
..++|++|++||+++|+++ +. ..++-.. .+.||++.-... .-+.++||+|.+++++++.+
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~t~~~ 122 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQTFTV 122 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-EEEET
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeEEEEc
Confidence 6899999999999999982 21 2222221 257999987651 12469999999999999887
Q ss_pred CC
Q psy15648 565 SV 566 (567)
Q Consensus 565 ~~ 566 (567)
+.
T Consensus 123 ~~ 124 (168)
T PF11852_consen 123 PG 124 (168)
T ss_dssp GG
T ss_pred CC
Confidence 63
No 83
>KOG0470|consensus
Probab=94.86 E-value=0.082 Score=57.14 Aligned_cols=21 Identities=29% Similarity=0.312 Sum_probs=17.5
Q ss_pred HHhCCCceeeeccccccCCCC
Q psy15648 417 SLLMPGVGVTYYGDEIGMEGP 437 (567)
Q Consensus 417 ~l~~pG~P~iy~G~E~g~~~~ 437 (567)
+.+..|+|++|||+|+|-+..
T Consensus 581 ~~lg~g~pl~fmGdEfGh~e~ 601 (757)
T KOG0470|consen 581 LGLGGGAPLNFMGDEFGHPEW 601 (757)
T ss_pred HhccCccceeccccccCCccc
Confidence 345689999999999998754
No 84
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=94.43 E-value=0.022 Score=45.49 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHhccccC-ccccCceEEee---cCCCcEEEEeccccc
Q psy15648 341 LYRKLSQLRRTD-TMIYGAVSTHI---LNGEWVLGLSRAANM 378 (567)
Q Consensus 341 ~~k~Li~lR~~~-al~~G~~~~~~---~~~~~v~~f~R~~~~ 378 (567)
+||+||+||+++ +|..|++..+. ...+.++++.|..++
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~ 42 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGG 42 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETT
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCC
Confidence 699999999998 99999887665 325667778776444
No 85
>KOG3625|consensus
Probab=93.42 E-value=0.32 Score=53.72 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=48.1
Q ss_pred CCCCCccCCCC-----HHHHHHHHHHHHHHHhCCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchh
Q psy15648 55 SAKQPDLNFRS-----KKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPE 129 (567)
Q Consensus 55 ~~~~pdLN~~n-----p~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (567)
|.+-..|+|.| |-++++|.+...-=.. =.||+|+|.++.- + . .
T Consensus 495 WGDsVKLryG~kpeDsPyLWq~M~kY~e~tAr-iFdG~RlDNcHsT--P---------------l--------------H 542 (1521)
T KOG3625|consen 495 WGDSVKLRYGNKPEDSPYLWQHMKKYTEITAR-IFDGVRLDNCHST--P---------------L--------------H 542 (1521)
T ss_pred ecceeeeccCCCcccChHHHHHHHHHHHHHHH-HhcceeeccCCCC--c---------------h--------------h
Confidence 55667899975 7799998886654333 3899999988876 1 0 0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEEEEeccCCHHHH
Q psy15648 130 LYEILVKWRALVDEYKQKTGHTRILIVESYTDIENT 165 (567)
Q Consensus 130 ~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~ 165 (567)
+.+ -+-+..+++ +|+.++++|..+..+..
T Consensus 543 VaE---ylLd~ARk~----nPnlYVvAELFtgSe~~ 571 (1521)
T KOG3625|consen 543 VAE---YLLDAARKL----NPNLYVVAELFTGSEDL 571 (1521)
T ss_pred HHH---HHHHHHHhc----CCCeEEEeeeccCCccc
Confidence 112 223344455 89999999998755443
No 86
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=93.34 E-value=0.056 Score=58.35 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=33.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHhCC-CCeeEecccCccccCCCC
Q psy15648 57 KQPDLNFRSKKLQEAMEAVLRFWLDKG-IDGWRIDALKHMFEAGDF 101 (567)
Q Consensus 57 ~~pdLN~~np~vr~~i~~~~~~Wl~~G-VDGfRlD~~~~l~~~~~~ 101 (567)
++.-|-.+.++|-+.--..+.-|++.| |||.|+|.+..++++.++
T Consensus 269 ~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gY 314 (889)
T COG3280 269 SLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGY 314 (889)
T ss_pred chheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHH
Confidence 344455567888888888888888864 899999999988776543
No 87
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=93.12 E-value=0.37 Score=56.50 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCCCCccCCC-----CHHHHHHHHHHHHHHHhCCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchh
Q psy15648 55 SAKQPDLNFR-----SKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPE 129 (567)
Q Consensus 55 ~~~~pdLN~~-----np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (567)
|.+-.+|.|. ||.++++|.+-.+--.+. .+|||+|.++.- +
T Consensus 473 WGDcVKLRYG~~peDsP~LW~~M~~Y~~~~Aki-F~G~RiDNCHST--P------------------------------- 518 (1464)
T TIGR01531 473 WGDSVKLRYGNKPEDSPYLWQHMKEYTEMTARI-FDGVRIDNCHST--P------------------------------- 518 (1464)
T ss_pred ccceeeeccCCCCcCCHHHHHHHHHHHHHHHHh-hcceeeecccCC--c-------------------------------
Confidence 5566788885 699999999987764444 999999998877 1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEEEEeccCCHHHHhhhh
Q psy15648 130 LYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYF 169 (567)
Q Consensus 130 ~~~~l~~~r~~~~~~~~~~~~~~~ligE~~~~~~~~~~y~ 169 (567)
..+-+-+-+..+++ +|+.++++|..+..+++-..|
T Consensus 519 -lhVaeylLd~AR~v----nPnLyV~AELFTGSee~D~~F 553 (1464)
T TIGR01531 519 -IHVAEYLLDAARKY----NPNLYVVAELFTGSETLDNVF 553 (1464)
T ss_pred -HHHHHHHHHHHhhc----CCCeEEEeeecCCcHHHHHHH
Confidence 11222232333344 899999999998766554333
No 88
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=90.63 E-value=0.56 Score=37.81 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=21.8
Q ss_pred ecCCeEEEEEEEcCCCCEEEEEEeCCCc
Q psy15648 531 LNGEWVLGLSRSMPGNDTYIVLINFNSI 558 (567)
Q Consensus 531 ~~~~~vl~~~R~~~~~~~~~vv~N~~~~ 558 (567)
..++.|+||.|...+++.++||+||++.
T Consensus 6 d~~~~v~af~R~~~~~~~~lvv~Nf~~~ 33 (95)
T PF02806_consen 6 DNENNVIAFERKDKGDDRVLVVFNFSPE 33 (95)
T ss_dssp EESSSEEEEEETTTETTEEEEEEESSSS
T ss_pred cCCCCEEEEEEcCCCCCEEEEEEECCCc
Confidence 3467899999964222389999999998
No 89
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=89.57 E-value=1.3 Score=44.18 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=51.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHH
Q psy15648 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRA 139 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 139 (567)
.+++.+|+.++.|.+-+.--+++|+|||-+|.+.....-.... ........+..++++.+.+
T Consensus 137 ~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~------------------~~~~~~~~~m~~~i~~Ia~ 198 (315)
T TIGR01370 137 DVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENG------------------DNRPGAAAEMIAFVCEIAA 198 (315)
T ss_pred eEecccHHHHHHHHHHHHHHHHcCCCeEeeccchhhhhhcccC------------------CcchhhHHHHHHHHHHHHH
Confidence 4678899999999998888788999999999988872110000 0001122446678888766
Q ss_pred HHHHHhhhcCCceEEEE
Q psy15648 140 LVDEYKQKTGHTRILIV 156 (567)
Q Consensus 140 ~~~~~~~~~~~~~~lig 156 (567)
.+++. .|++++|.
T Consensus 199 ~ar~~----~P~~~II~ 211 (315)
T TIGR01370 199 YARAQ----NPQFVIIP 211 (315)
T ss_pred HHHHH----CCCEEEEe
Confidence 66666 78888874
No 90
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=85.84 E-value=0.85 Score=45.72 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=32.3
Q ss_pred CccCCCCHHHHHHHHHHHHHHH-hCCCCeeEecccCc
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWL-DKGIDGWRIDALKH 94 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl-~~GVDGfRlD~~~~ 94 (567)
.-+|+.||++|+.+.+.++..+ +.|||||-+|....
T Consensus 130 ~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 130 AVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred ceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 4589999999999999999999 68999999997654
No 91
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=85.80 E-value=1 Score=45.96 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=32.8
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCcc
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHM 95 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l 95 (567)
.-+|+.||++++...+.++.+++ .|||||-+|+...+
T Consensus 152 ~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 152 LMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCcc
Confidence 35999999999999999999995 89999999987654
No 92
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=84.97 E-value=3.3 Score=41.63 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEeccc
Q psy15648 58 QPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDAL 92 (567)
Q Consensus 58 ~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~ 92 (567)
..=||=.+|+||++|+++++--++ +.|||+-||-.
T Consensus 128 ~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy 163 (311)
T PF02638_consen 128 YYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDY 163 (311)
T ss_pred ceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEeccc
Confidence 335888999999999999999987 59999999943
No 93
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=84.27 E-value=1.9 Score=43.29 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=33.9
Q ss_pred CccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccCcc
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l 95 (567)
.-+|+.||++++.+.+.++.+++.|||||-+|....+
T Consensus 125 ~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~ 161 (308)
T cd06593 125 GIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERI 161 (308)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCC
Confidence 4589999999999999999999999999999987766
No 94
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=83.29 E-value=5.9 Score=41.11 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCcc
Q psy15648 58 QPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHM 95 (567)
Q Consensus 58 ~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l 95 (567)
+--||+.+|+|++++.+++.-.++ .|||.|.+|....+
T Consensus 157 ~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 157 QYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp BEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred ceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 345999999999999998877665 79999999998877
No 95
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=81.69 E-value=1.2 Score=32.15 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=15.8
Q ss_pred EEEEEEEcCCCCEEEEEEeCCCccEEEeCC
Q psy15648 536 VLGLSRSMPGNDTYIVLINFNSIIEEVDLS 565 (567)
Q Consensus 536 vl~~~R~~~~~~~~~vv~N~~~~~~~~~l~ 565 (567)
|-+..|.. ++.++++++|+++++++++|+
T Consensus 2 Vev~~R~~-~~~~y~F~~N~s~~~~~v~l~ 30 (58)
T PF08533_consen 2 VEVTVREN-DGGRYLFLLNFSDEPQTVTLP 30 (58)
T ss_dssp EEEEE-----ETTEEEEEE-SSS-EE----
T ss_pred eEEEEEEc-CCCEEEEEEECCCCCEEEEcC
Confidence 33556765 778999999999999999874
No 96
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=76.24 E-value=3 Score=42.06 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=30.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccC
Q psy15648 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALK 93 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~ 93 (567)
-+|+.||++++...+.++..++.|||||=+|...
T Consensus 131 ~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~E 164 (317)
T cd06598 131 LIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGE 164 (317)
T ss_pred ccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCC
Confidence 4678999999999999999888999999999664
No 97
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=75.57 E-value=4.6 Score=45.67 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=41.1
Q ss_pred cceeeccCCC-CCCccCCCCHHHHHHHH-HHHHHHHhCCCCeeEecccCccc
Q psy15648 47 KMFYLHQFSA-KQPDLNFRSKKLQEAME-AVLRFWLDKGIDGWRIDALKHMF 96 (567)
Q Consensus 47 ~~~y~~~f~~-~~pdLN~~np~vr~~i~-~~~~~Wl~~GVDGfRlD~~~~l~ 96 (567)
+.-|...|++ ...=+||.||++|+... +..++++++|||||=.|......
T Consensus 367 g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 367 GEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEP 418 (772)
T ss_pred CCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCcc
Confidence 5666666666 55678999999999999 57788999999999999876663
No 98
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=72.28 E-value=4.3 Score=41.38 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=31.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccCc
Q psy15648 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKH 94 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~ 94 (567)
-+||.||++++...+.++..++.|||||=+|....
T Consensus 126 ~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep 160 (339)
T cd06604 126 FPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEP 160 (339)
T ss_pred ccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCc
Confidence 37999999999999999998899999999997753
No 99
>PRK10658 putative alpha-glucosidase; Provisional
Probab=71.68 E-value=6.2 Score=44.04 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccCcc
Q psy15648 57 KQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95 (567)
Q Consensus 57 ~~pdLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l 95 (567)
...=+||.||++|+...+.++..+++|||||-.|....+
T Consensus 382 ~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 382 GMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERI 420 (665)
T ss_pred CceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCcee
Confidence 445689999999999999999999999999999976544
No 100
>KOG2212|consensus
Probab=70.99 E-value=28 Score=34.72 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=27.2
Q ss_pred ceeecccCCCCccccccC--------CHHHHHHHHHHHHhCC
Q psy15648 388 AKFEAYDNHDNPRVTNRL--------GKELADAYLMISLLMP 421 (567)
Q Consensus 388 ~~v~~l~nHD~~R~~~~~--------~~~~~~~~~~l~l~~p 421 (567)
+.+++++|||+.|-...- ..++.|+|.+++|..|
T Consensus 307 ~~L~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~P 348 (504)
T KOG2212|consen 307 RALVFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHP 348 (504)
T ss_pred ceEEEeccCcccccCCCCcceEEEecchhhhhhhhhhheecc
Confidence 478899999999875542 2347999999999988
No 101
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=69.72 E-value=5.2 Score=40.35 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=31.6
Q ss_pred CccCCCCHHHHHHHHHHHHHH-HhCCCCeeEecccCcc
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFW-LDKGIDGWRIDALKHM 95 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~W-l~~GVDGfRlD~~~~l 95 (567)
.-+|+.||++|+...+.++.. ++.|||||=+|+-..+
T Consensus 131 ~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 131 GVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred eeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCC
Confidence 359999999999999988877 5689999999976644
No 102
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.61 E-value=5.2 Score=40.32 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=30.0
Q ss_pred ccCCCCHHHHHHHHHHH-HHHHhCCCCeeEecccCc
Q psy15648 60 DLNFRSKKLQEAMEAVL-RFWLDKGIDGWRIDALKH 94 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~-~~Wl~~GVDGfRlD~~~~ 94 (567)
-+||.||++++...+.+ +..++.|||||=+|....
T Consensus 134 ~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 134 FVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred eecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 48999999999999988 566678999999997654
No 103
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=68.49 E-value=5.8 Score=40.02 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHH-hCCCCeeEecccC
Q psy15648 60 DLNFRSKKLQEAMEAVLRFWL-DKGIDGWRIDALK 93 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~~~Wl-~~GVDGfRlD~~~ 93 (567)
-+||.||++++...+.++..+ +.|||||=+|...
T Consensus 126 ~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 126 YPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred ccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 589999999999999998888 6899999999543
No 104
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=66.72 E-value=21 Score=24.85 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=19.5
Q ss_pred CeEEEEEEEcCCCCEEEEEEeCCCccEEEe
Q psy15648 534 EWVLGLSRSMPGNDTYIVLINFNSIIEEVD 563 (567)
Q Consensus 534 ~~vl~~~R~~~~~~~~~vv~N~~~~~~~~~ 563 (567)
++++.|.... +++++++++|.+.++.++.
T Consensus 9 ~dlv~ysyek-~g~k~viaanvgke~ke~s 37 (64)
T PF09083_consen 9 KDLVMYSYEK-NGQKIVIAANVGKEPKEIS 37 (64)
T ss_dssp TTEEEEEEEE-TTEEEEEEEE-SSS-EEEE
T ss_pred cceEEEEeec-CCcEEEEEeccCCCccccc
Confidence 4444455444 7899999999999887764
No 105
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=65.85 E-value=7.1 Score=39.41 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=31.0
Q ss_pred CCccCCCCHHHHHHHHHHHH-HHHhCCCCeeEecccCcc
Q psy15648 58 QPDLNFRSKKLQEAMEAVLR-FWLDKGIDGWRIDALKHM 95 (567)
Q Consensus 58 ~pdLN~~np~vr~~i~~~~~-~Wl~~GVDGfRlD~~~~l 95 (567)
-.-+|+.||++++...+.++ ..++.|||||=+|.....
T Consensus 123 ~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 123 TRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPE 161 (319)
T ss_pred ccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 35699999999998877654 567899999999987644
No 106
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=60.71 E-value=10 Score=38.50 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=29.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCeeEecccC
Q psy15648 61 LNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALK 93 (567)
Q Consensus 61 LN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~ 93 (567)
+||.||++|++..+..+.+.+.|||||=+|+..
T Consensus 101 pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnE 133 (332)
T cd06601 101 PDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTT 133 (332)
T ss_pred eCCCCHHHHHHHHHHHHHHHhCCCceeecCCCC
Confidence 468899999999999999999999999999653
No 107
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=60.65 E-value=20 Score=37.35 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=32.5
Q ss_pred CCCCCccCCC-----CHHHHHHHHHHHHHHHhCCCCeeEecccCcc
Q psy15648 55 SAKQPDLNFR-----SKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95 (567)
Q Consensus 55 ~~~~pdLN~~-----np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l 95 (567)
|.+-..|.|+ ||.++++|.+..+--.+ =.+|||+|.++.-
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~-iF~G~RiDNCHST 404 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK-IFHGFRIDNCHST 404 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHHH-hcCeeeeecCCCC
Confidence 5566788885 69999999998886444 4999999988877
No 108
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=60.58 E-value=20 Score=36.57 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=30.3
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccC
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALK 93 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~ 93 (567)
.-+||.||++++...+.++..++ .|||||=+|...
T Consensus 130 ~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 130 VFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 34789999999999999998887 599999999654
No 109
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=56.89 E-value=13 Score=39.48 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=31.0
Q ss_pred CccCCCCHHHHHHHHHHHHHHHhC-CCCeeEecccCcc
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLDK-GIDGWRIDALKHM 95 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~~-GVDGfRlD~~~~l 95 (567)
.-+||.||++++.+.+.++..++. |||||-+|.....
T Consensus 145 ~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 145 GFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp EEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred cccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 357899999999999999999997 9999999986555
No 110
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=56.73 E-value=16 Score=42.21 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=34.7
Q ss_pred eeccCCCCCC-ccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccC
Q psy15648 50 YLHQFSAKQP-DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALK 93 (567)
Q Consensus 50 y~~~f~~~~p-dLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~ 93 (567)
|...+|++.. =+||.||++|+...+.++.+++.|||||=+|+-.
T Consensus 292 y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnE 336 (978)
T PLN02763 292 FVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNE 336 (978)
T ss_pred eEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCC
Confidence 3444444332 2589999999999999999999999999999754
No 111
>smart00632 Aamy_C Aamy_C domain.
Probab=53.10 E-value=30 Score=26.84 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=21.0
Q ss_pred cCCeEEEEEEEcCCCCEEEEEEeCCCccEEEe
Q psy15648 532 NGEWVLGLSRSMPGNDTYIVLINFNSIIEEVD 563 (567)
Q Consensus 532 ~~~~vl~~~R~~~~~~~~~vv~N~~~~~~~~~ 563 (567)
+++.+|+|.| +++.+|++|.+...+.+.
T Consensus 6 ~~~~~laF~R----g~~g~VaiN~~~~~~~~~ 33 (81)
T smart00632 6 NGDNQIAFER----GSKGFVAINRSDSDLTIT 33 (81)
T ss_pred CCCeEEEEEC----CCeEEEEEECCCCceEEE
Confidence 4455999999 367888999988766554
No 112
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=47.47 E-value=63 Score=33.17 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=25.0
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh-CCCCeeEec
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRID 90 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD 90 (567)
|.-...+|+.|+.+++.+.-+++ .|.||+-||
T Consensus 87 ~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdID 119 (358)
T cd02875 87 PLEQISNPTYRTQWIQQKVELAKSQFMDGINID 119 (358)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEc
Confidence 33346799999988776666676 699999998
No 113
>PRK10426 alpha-glucosidase; Provisional
Probab=47.35 E-value=20 Score=39.82 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=30.8
Q ss_pred ccCCCCHHHHHHHHHHHH-HHHhCCCCeeEecccCcc
Q psy15648 60 DLNFRSKKLQEAMEAVLR-FWLDKGIDGWRIDALKHM 95 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~~-~Wl~~GVDGfRlD~~~~l 95 (567)
-+|+.||++|+...+.++ ..++.|||||=+|.-..+
T Consensus 329 ~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 329 VVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred eecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCC
Confidence 589999999999999875 566789999999976655
No 114
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=46.87 E-value=77 Score=31.58 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCCeeEec
Q psy15648 64 RSKKLQEAMEAVLRFWLD-KGIDGWRID 90 (567)
Q Consensus 64 ~np~vr~~i~~~~~~Wl~-~GVDGfRlD 90 (567)
.+++.|+.+++.+.-+++ .|.||+=||
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiD 115 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLD 115 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeec
Confidence 578889988887776776 699999998
No 115
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=46.27 E-value=47 Score=33.31 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=33.4
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHhCCCCeeEecccCcc
Q psy15648 57 KQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95 (567)
Q Consensus 57 ~~pdLN~~np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l 95 (567)
++.=+|=.+++||+|++++++--.++|+|.+-||-+.+-
T Consensus 111 ~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP 149 (316)
T PF13200_consen 111 GEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFP 149 (316)
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecC
Confidence 344567778999999999999999999999999977665
No 116
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=43.35 E-value=47 Score=36.24 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhcCcccc----CCeeEEEe-cCCeEEEEE-EEcC-------CCCEEEEEEeCCCccEEEeCC
Q psy15648 505 TYKLYRKLSQLRRTDTMIY----GAVSTHIL-NGEWVLGLS-RSMP-------GNDTYIVLINFNSIIEEVDLS 565 (567)
Q Consensus 505 ~~~~~~~L~~lRk~~~~l~----g~~~~~~~-~~~~vl~~~-R~~~-------~~~~~~vv~N~~~~~~~~~l~ 565 (567)
--++-..|-++|+++|.|+ +...+..+ .+..++-|. |... ..+.+++|+|++.++.+|++.
T Consensus 700 q~~fnlaLR~fR~~~PWLr~NL~~~Drf~~i~~~~~TlfyglR~~P~~~d~~~~~~~v~~v~hMgG~p~tv~l~ 773 (811)
T PF14872_consen 700 QTAFNLALRQFRRAHPWLRHNLRGGDRFNRISDDGRTLFYGLRTNPQEEDTSEDPEQVAMVAHMGGEPMTVTLG 773 (811)
T ss_pred HHHHHHHHHHHhhcCchhhhcccccccccccCCCCeEEEEEecCCCCcccccCCCccEEEEEecCCCceEecHH
Confidence 4677788999999999982 33333333 334444443 4432 136899999999999998864
No 117
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=42.77 E-value=25 Score=38.20 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=26.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCcc
Q psy15648 60 DLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKHM 95 (567)
Q Consensus 60 dLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l 95 (567)
=+|-.|++-|++|++-++..++ +|+|||-+|.+...
T Consensus 234 l~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 234 LMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp EB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred EecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 3678999999999999999998 69999999998865
No 118
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=41.74 E-value=1.5e+02 Score=29.82 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCCeeEec
Q psy15648 64 RSKKLQEAMEAVLRFWLD-KGIDGWRID 90 (567)
Q Consensus 64 ~np~vr~~i~~~~~~Wl~-~GVDGfRlD 90 (567)
.+++.|+.+++.+.-|++ .|.||+=||
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiD 132 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDID 132 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEC
Confidence 478889988887777787 699999998
No 119
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.17 E-value=45 Score=33.12 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=26.3
Q ss_pred ccCCCCHHHHHHHHH-HHHHHHhCCCCeeEeccc
Q psy15648 60 DLNFRSKKLQEAMEA-VLRFWLDKGIDGWRIDAL 92 (567)
Q Consensus 60 dLN~~np~vr~~i~~-~~~~Wl~~GVDGfRlD~~ 92 (567)
-+|+.||+.++...+ +.+..++.|||||=.|.-
T Consensus 125 ~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 125 LFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred EecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCC
Confidence 579999999986655 456667789999999954
No 120
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=35.79 E-value=1.1e+02 Score=29.80 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCCeeEecccCcc
Q psy15648 65 SKKLQEAMEAVLRFWLDKGIDGWRIDALKHM 95 (567)
Q Consensus 65 np~vr~~i~~~~~~Wl~~GVDGfRlD~~~~l 95 (567)
+|+-++.+.+-++..++.|+||.-||.+...
T Consensus 121 ~~eWkdii~~~l~rL~d~GfdGvyLD~VD~y 151 (300)
T COG2342 121 EPEWKDIIRSYLDRLIDQGFDGVYLDVVDAY 151 (300)
T ss_pred CHHHHHHHHHHHHHHHHccCceEEEeeechH
Confidence 3888899999999988999999999998776
No 121
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=32.81 E-value=1.7e+02 Score=29.55 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCCeeEec
Q psy15648 63 FRSKKLQEAMEAVLRFWLD-KGIDGWRID 90 (567)
Q Consensus 63 ~~np~vr~~i~~~~~~Wl~-~GVDGfRlD 90 (567)
..+++.|+.+++.+.-|++ .|.||+=+|
T Consensus 86 ~~~~~~r~~fi~~i~~~~~~~~~DGidiD 114 (334)
T smart00636 86 LSDPASRKKFIDSIVSFLKKYGFDGIDID 114 (334)
T ss_pred HCCHHHHHHHHHHHHHHHHHcCCCeEEEC
Confidence 3568889988888877787 699999998
No 122
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=30.73 E-value=89 Score=31.78 Aligned_cols=35 Identities=6% Similarity=-0.121 Sum_probs=30.5
Q ss_pred CccCCCCHHHHHHHHHHHHHHHh---CCCCeeEecccC
Q psy15648 59 PDLNFRSKKLQEAMEAVLRFWLD---KGIDGWRIDALK 93 (567)
Q Consensus 59 pdLN~~np~vr~~i~~~~~~Wl~---~GVDGfRlD~~~ 93 (567)
.-+||.||++++...+.++..+. .|||||=+|+..
T Consensus 125 ~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 125 SWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred CCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCC
Confidence 46899999999999999999885 599999999653
No 123
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=30.52 E-value=1e+02 Score=30.60 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCCeeEecc
Q psy15648 63 FRSKKLQEAMEAVLRFWLD-KGIDGWRIDA 91 (567)
Q Consensus 63 ~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~ 91 (567)
..+|..|+.+++.+.-+++ .|.||+-||-
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~ 112 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDF 112 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEec
Confidence 4678889988776665665 7999999984
No 124
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.81 E-value=70 Score=33.34 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=35.6
Q ss_pred ceeeccCCCCCCccCCCCHHHHHHHHHHHHHHHh-CCCCeeEecccCc
Q psy15648 48 MFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLD-KGIDGWRIDALKH 94 (567)
Q Consensus 48 ~~y~~~f~~~~pdLN~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~ 94 (567)
.||.|.-+-...=||=.+|+|+++|.+.+.--+. +.|||+-||-.-+
T Consensus 163 ~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy 210 (418)
T COG1649 163 VYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFY 210 (418)
T ss_pred EEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeec
Confidence 3555543334566778899999999998877777 6999999996555
No 125
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=28.83 E-value=1.4e+02 Score=27.50 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCCeeEecc
Q psy15648 63 FRSKKLQEAMEAVLRFWLD-KGIDGWRIDA 91 (567)
Q Consensus 63 ~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~ 91 (567)
..++..|+.+++.+.-+++ .|.||+=+|-
T Consensus 83 ~~~~~~~~~f~~~~~~~v~~~~~DGidiD~ 112 (210)
T cd00598 83 ASDPASRAAFANSLVSFLKTYGFDGVDIDW 112 (210)
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCceEEee
Confidence 4678888888887777776 6999999983
No 126
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=25.62 E-value=2.1e+02 Score=29.20 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCCeeEec
Q psy15648 64 RSKKLQEAMEAVLRFWLD-KGIDGWRID 90 (567)
Q Consensus 64 ~np~vr~~i~~~~~~Wl~-~GVDGfRlD 90 (567)
.++..|+.+++.+.-|++ .|.||+=||
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiD 119 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLD 119 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeee
Confidence 578889988887777887 699999998
No 127
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=25.48 E-value=1.3e+02 Score=30.14 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCCeeEecc
Q psy15648 63 FRSKKLQEAMEAVLRFWLD-KGIDGWRIDA 91 (567)
Q Consensus 63 ~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~ 91 (567)
..||+.|+.+++.+.-+++ .|.||+-+|-
T Consensus 82 l~~~~~r~~fi~~iv~~l~~~~~DGidiDw 111 (313)
T cd02874 82 LSNPEARQRLINNILALAKKYGYDGVNIDF 111 (313)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 4578888888877766676 6999999983
No 128
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=24.30 E-value=2.2e+02 Score=28.48 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCCeeEec
Q psy15648 64 RSKKLQEAMEAVLRFWLD-KGIDGWRID 90 (567)
Q Consensus 64 ~np~vr~~i~~~~~~Wl~-~GVDGfRlD 90 (567)
.+|+.|+.+++.+.-+++ .|.||+=+|
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD 115 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLE 115 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEe
Confidence 478889988877666666 699999988
No 129
>PLN02635 disproportionating enzyme
Probab=22.93 E-value=4.6e+02 Score=28.58 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=11.6
Q ss_pred CCCeeEecccCcc
Q psy15648 83 GIDGWRIDALKHM 95 (567)
Q Consensus 83 GVDGfRlD~~~~l 95 (567)
.+|++|||.+-.+
T Consensus 316 ~~d~lRIDHf~Gf 328 (538)
T PLN02635 316 LYDEFRIDHFRGF 328 (538)
T ss_pred hCCeEEecchhhh
Confidence 6999999998877
No 130
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=22.84 E-value=1.8e+02 Score=29.18 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHh-CCCCeeEecccCccccCCCCCCCCCCCCCCCCCCccccccccCCCchhHHHHHHHHHHHHHH
Q psy15648 65 SKKLQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDE 143 (567)
Q Consensus 65 np~vr~~i~~~~~~Wl~-~GVDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~ 143 (567)
|++-|+.+++.+.-|++ .|+||+=||-=....... .........|++++|+.+++
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~------------------------~~~~~~~~~~l~~L~~~l~~ 151 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGD------------------------PQDKDNYTAFLKELRKALKR 151 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSS------------------------TTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeecccccc------------------------chhhhhhhhhhhhhhhhhcc
Confidence 56778888888777787 599999998332220000 01234456788888877766
Q ss_pred H
Q psy15648 144 Y 144 (567)
Q Consensus 144 ~ 144 (567)
.
T Consensus 152 ~ 152 (343)
T PF00704_consen 152 A 152 (343)
T ss_dssp H
T ss_pred c
Confidence 4
No 131
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=22.24 E-value=2.1e+02 Score=27.53 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCCeeEecc
Q psy15648 63 FRSKKLQEAMEAVLRFWLD-KGIDGWRIDA 91 (567)
Q Consensus 63 ~~np~vr~~i~~~~~~Wl~-~GVDGfRlD~ 91 (567)
..+|+.|+.+++.+.-+++ .|.||+=+|-
T Consensus 78 ~~~~~~r~~fi~~lv~~~~~~~~DGIdiDw 107 (253)
T cd06545 78 LNDPAKRKALVDKIINYVVSYNLDGIDVDL 107 (253)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCceeEEe
Confidence 4689999988887766776 6999999983
No 132
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=21.60 E-value=76 Score=27.51 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhcCcccc
Q psy15648 505 TYKLYRKLSQLRRTDTMIY 523 (567)
Q Consensus 505 ~~~~~~~L~~lRk~~~~l~ 523 (567)
++++++.|-+.-+..|-+.
T Consensus 105 ~i~yl~~l~~~~~~fpGf~ 123 (136)
T PF03711_consen 105 IIDYLLALQEFGAHFPGFE 123 (136)
T ss_dssp HHHHHHHHHHHHTCSTTS-
T ss_pred HHHHHHHHHHhCCcCcCCC
Confidence 8888888888888777663
No 133
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=21.02 E-value=49 Score=20.03 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=8.2
Q ss_pred hCCCceeeec
Q psy15648 252 LMPGVGVTYY 261 (567)
Q Consensus 252 ~~pG~P~iYy 261 (567)
.-||.|++|+
T Consensus 11 ~rPg~pfl~~ 20 (29)
T PF10632_consen 11 ARPGSPFLFT 20 (29)
T ss_pred ccCCCcEEEE
Confidence 3689999997
Done!