RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15648
(567 letters)
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 286 bits (734), Expect = 1e-90
Identities = 75/353 (21%), Positives = 120/353 (33%), Gaps = 70/353 (19%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
Y +YYVW + G W Y Y F + PDLN+ + ++
Sbjct: 124 EYRDYYVWAGPD------TDTKETKLDGGRVWHYSPTG--MYYGYFWSGMPDLNYNNPEV 175
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
QE + + ++WL +G+DG+R+D H+ F
Sbjct: 176 QEKVIGIAKYWLKQGVDGFRLDGAMHI-----FPPA---------------------QYD 209
Query: 129 ELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLV-L 187
+ + K+R ++E K L+ E + E YF + FNF+L
Sbjct: 210 KNFTWWEKFRQEIEEVKP-----VYLVGEVWDISETVAPYF----KYGFDSTFNFKLAEA 260
Query: 188 DPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGKELADAYL 247
+ N K ++ NHD R+ ++LG++ A +
Sbjct: 261 VIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARV 320
Query: 248 MISLL--MPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTK 305
S+ +PG YYG+EIGM G + R P QW +
Sbjct: 321 AASIYLTLPGNPFIYYGEEIGMR-------------GQGP------HEVIREPFQWYNGS 361
Query: 306 HAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT-DTMIYG 357
G + W P N + +VE ++K S YR+L R G
Sbjct: 362 GEGET----YWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTG 410
Score = 142 bits (360), Expect = 6e-37
Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 28/175 (16%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLL--MPGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
NHD R+ ++LG++ A + S+ +PG YYG+EIGM G
Sbjct: 300 TNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMR-------------GQG 346
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
+ R P QW + G + W P N + +VE ++K S YR+
Sbjct: 347 P------HEVIREPFQWYNGSGEGETY----WEPAMYNDGFTSVEQEEKNLDSLLNHYRR 396
Query: 512 LSQLRRT-DTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLS 565
L R G + I G V+ R V N + ++ ++
Sbjct: 397 LIHFRNENPVFYTGKI-EIINGGLNVVAFRRYN-DKRDLYVYHNLVNRPVKIKVA 449
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 277 bits (710), Expect = 1e-87
Identities = 68/373 (18%), Positives = 121/373 (32%), Gaps = 82/373 (21%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
Y +YYVW + + W W E FY F PDLN+ + ++
Sbjct: 111 HYRDYYVWANKET--DLDERREW---DGEKIWHPLE-DGRFYRGLFGPFSPDLNYDNPQV 164
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+ M+ ++ LD G+DG+R DA KHM +
Sbjct: 165 FDEMKRLVLHLLDMGVDGFRFDAAKHMRD------------------------------- 193
Query: 129 ELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLV-- 186
+ + + W+ + + K I + E + + ++ + Y NF
Sbjct: 194 TIEQNVRFWKYFLSDLK------GIFLAEIWAEARMVDEHGRI-----FGYMLNFDTSHC 242
Query: 187 -LDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLG---KEL 242
+ E VLI ++ + + + NHD R+ + G KE
Sbjct: 243 IKEAVWKENTRVLI---------ESIERAVIAKDYLPVNFTSNHDMSRLASFEGGFSKEK 293
Query: 243 ADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWD 302
+ I +PGV + +YGDE+GM G + P W+
Sbjct: 294 IKLSISILFTLPGVPLVFYGDELGM----------------KGVYQKPNTEVVLDPFPWN 337
Query: 303 STKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT-DTMIYGAVST 361
+ T W N + ++VE QK+ S ++ R+ + +
Sbjct: 338 ESMCVEGQTF-WKWPAYNGPFSGISVEYQKRDPDSILSHTLGWTRFRKENQWIDRAKL-E 395
Query: 362 HILNGEWVLGLSR 374
+ + L
Sbjct: 396 FLCKEDKFLVYRL 408
Score = 148 bits (376), Expect = 2e-39
Identities = 32/175 (18%), Positives = 56/175 (32%), Gaps = 23/175 (13%)
Query: 395 NHDNPRVTNRLG---KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
NHD R+ + G KE + I +PGV + +YGDE+GM
Sbjct: 276 NHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGM----------------K 319
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
G + P W+ + T W N + ++VE QK+ S
Sbjct: 320 GVYQKPNTEVVLDPFPWNESMCVEGQTF-WKWPAYNGPFSGISVEYQKRDPDSILSHTLG 378
Query: 512 LSQLRRT-DTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLS 565
++ R+ + + + + L + V N + +
Sbjct: 379 WTRFRKENQWIDRAKL-EFLCKEDKFLVYRLYD-DQHSLKVFHNLSGEEVVFEGV 431
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 255 bits (655), Expect = 3e-78
Identities = 110/387 (28%), Positives = 152/387 (39%), Gaps = 67/387 (17%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK PNN+ S F GSAW D +YLH F +QPDLN+ + KL
Sbjct: 122 PYRDYYFWRDGK---DGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKL 178
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R D + + F D + K + Y T P
Sbjct: 179 REELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAY--------TQGP 230
Query: 129 ELYEILVKWRALVDEYKQKT--GHTRILIVE-SYTDIENTMKYFKYNGRPAAHY---PFN 182
L+ L E +K + + E + + F
Sbjct: 231 NLHRYL-------QEMHEKVFDHYDAVTAGEIFGAPLNQVPLFI----DSRRKELDMAFT 279
Query: 183 FQLV-LDPDKGERALV-LILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLG- 239
F L+ D + L + + K G + + NHDNPR + G
Sbjct: 280 FDLIRYDRALDRWHTIPRTLADFRQTIDKVDAI--AGEYGWNTFFLGNHDNPRAVSHFGD 337
Query: 240 ----------KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRNDERRDPN------- 281
K LA ++L G + GDE+GM P + D
Sbjct: 338 DRPQWREASAKALA----TVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQD 393
Query: 282 --NAGGARADET--------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQ 331
G A A+E RD RTP QWD + +AGF+T K WL VNPNY +N +
Sbjct: 394 YVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWLKVNPNYTEINAARE 452
Query: 332 KKADWSTYKLYRKLSQLRRT-DTMIYG 357
S Y YR L +R + G
Sbjct: 453 IGDPKSVYSFYRNLISIRHETPALSTG 479
Score = 128 bits (323), Expect = 1e-31
Identities = 59/192 (30%), Positives = 80/192 (41%), Gaps = 36/192 (18%)
Query: 394 DNHDNPRVTNRLG-----------KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRN 441
NHDNPR + G K LA ++L G + GDE+GM P
Sbjct: 324 GNHDNPRAVSHFGDDRPQWREASAKALA----TVTLTQRGTPFIFQGDELGMTNYPFKTL 379
Query: 442 DERRDPN---------NAGGARADET--------RDPERTPMQWDSTKHAGFSTARKTWL 484
+ D G A A+E RD RTP QWD + +AGF+T K WL
Sbjct: 380 QDFDDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSANAGFTTG-KPWL 438
Query: 485 PVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT-DTMIYGAVSTHILNGEWVLGLSRSM 543
VNPNY +N + S Y YR L +R + G+ + V +RS
Sbjct: 439 KVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRSQ 498
Query: 544 PGNDTYIVLINF 555
+TY+V++NF
Sbjct: 499 -DGETYLVVVNF 509
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 255 bits (654), Expect = 6e-78
Identities = 113/385 (29%), Positives = 170/385 (44%), Gaps = 62/385 (16%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
PY +YY W++GK +PPNN+ S F GSAW D +YLH F+ +QPDLN+ + K+
Sbjct: 135 PYRDYYFWRDGK---DNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKV 191
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+E + A+LRFWLDKG+ G R D + + F + + K + Y T P
Sbjct: 192 REDLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQY--------TMGP 243
Query: 129 ELYEILVKWRALVDEYKQKT-GHTRILIV-E-SYTDIENTMKYFKYNGRPAAHYPFNFQL 185
++ + E +K + E ++ + ++F + F F L
Sbjct: 244 NIHRYI-------QEMNRKVLSRYDVATAGEIFGVPLDRSSQFFDRRRH-ELNMAFMFDL 295
Query: 186 V-LDPDKGERALV--LILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLG--- 239
+ LD D ER L+ + ++ SK + G + + DNHDNPR + G
Sbjct: 296 IRLDRDSNERWRHKSWSLSQFRQIISKMDVT--VGKYGWNTFFLDNHDNPRAVSHFGDDR 353
Query: 240 --------KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRNDERRDPN--------- 281
K LA I+L Y G E+GM P + +E D
Sbjct: 354 PQWREASAKALA----TITLTQRATPFIYQGSELGMTNYPFRQLNEFDDIEVKGFWQDYV 409
Query: 282 NAGGARADET--------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKK 333
+G A E RD RTP QW+ T +AGF+ K W +NPNY +N E ++
Sbjct: 410 QSGKVTATEFLDNVRLTSRDNSRTPFQWNDTLNAGFTRG-KPWFHINPNYVEINAEREET 468
Query: 334 ADWSTYKLYRKLSQLRRT-DTMIYG 357
+ S Y+K+ QLR ++YG
Sbjct: 469 REDSVLNYYKKMIQLRHHIPALVYG 493
Score = 127 bits (322), Expect = 2e-31
Identities = 60/192 (31%), Positives = 85/192 (44%), Gaps = 36/192 (18%)
Query: 394 DNHDNPRVTNRLG-----------KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRN 441
DNHDNPR + G K LA I+L Y G E+GM P +
Sbjct: 338 DNHDNPRAVSHFGDDRPQWREASAKALA----TITLTQRATPFIYQGSELGMTNYPFRQL 393
Query: 442 DERRDPN---------NAGGARADET--------RDPERTPMQWDSTKHAGFSTARKTWL 484
+E D +G A E RD RTP QW+ T +AGF+ K W
Sbjct: 394 NEFDDIEVKGFWQDYVQSGKVTATEFLDNVRLTSRDNSRTPFQWNDTLNAGFTRG-KPWF 452
Query: 485 PVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT-DTMIYGAVSTHILNGEWVLGLSRSM 543
+NPNY +N E ++ + S Y+K+ QLR ++YGA V +R++
Sbjct: 453 HINPNYVEINAEREETREDSVLNYYKKMIQLRHHIPALVYGAYQDLNPQDNTVYAYTRTL 512
Query: 544 PGNDTYIVLINF 555
GN+ Y+V++NF
Sbjct: 513 -GNERYLVVVNF 523
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 253 bits (648), Expect = 4e-77
Identities = 110/379 (29%), Positives = 169/379 (44%), Gaps = 53/379 (13%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
P ++Y+W++GK PNNW S+F GSAW YDE +YLH F KQPDLN+ + ++
Sbjct: 121 PKRDWYIWRDGK---DGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEV 177
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
++A+ ++ +WLDKGIDG+RIDA+ H+ + D G + + P
Sbjct: 178 RQALYEMVNWWLDKGIDGFRIDAISHIKKKPGLPDLPNPKGLKYV-----PSFAGHMNQP 232
Query: 129 ELYEILVKWRALVDEYKQKT-GHTRILIV-E-SYTDIENTMKYFKYNGRPAAHY---PFN 182
+ E L E K++T I+ V E + ++ ++ F
Sbjct: 233 GIMEYL-------RELKEQTFARYDIMTVGEANGVTVDEAEQWV----GEENGVFNMIFQ 281
Query: 183 FQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLG--- 239
F+ + + + + + +K Q L G + +NHD PR + G
Sbjct: 282 FEHL-GLWERRADGSIDVRRLKRTLTKWQ--KGLENRGWNALFLENHDLPRSVSTWGNDR 338
Query: 240 ---KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRNDERRDPN--------NAGGAR 287
E A A + M G Y G EIGM + RD + A G
Sbjct: 339 DYWAESAKALGALYFFMQGTPFIYQGQEIGMTNVRFDDIRDYRDVSALRLYELERAKGRT 398
Query: 288 ADET--------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTY 339
+E RD RTPMQW +AGF+T W+ VN NY +NVEA+++ S +
Sbjct: 399 HEEAMTIIWKTGRDNSRTPMQWSGASNAGFTTG-TPWIKVNENYRTINVEAERRDPNSVW 457
Query: 340 KLYRKLSQLRRT-DTMIYG 357
YR++ QLR+ + +YG
Sbjct: 458 SFYRQMIQLRKANELFVYG 476
Score = 126 bits (318), Expect = 5e-31
Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 26/186 (13%)
Query: 394 DNHDNPRVTNRLG------KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRNDERRD 446
+NHD PR + G E A A + M G Y G EIGM + RD
Sbjct: 323 ENHDLPRSVSTWGNDRDYWAESAKALGALYFFMQGTPFIYQGQEIGMTNVRFDDIRDYRD 382
Query: 447 PN--------NAGGARADET--------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNY 490
+ A G +E RD RTPMQW +AGF+T W+ VN NY
Sbjct: 383 VSALRLYELERAKGRTHEEAMTIIWKTGRDNSRTPMQWSGASNAGFTTG-TPWIKVNENY 441
Query: 491 YYLNVEAQKKADWSTYKLYRKLSQLRRT-DTMIYGAVSTHILNGEWVLGLSRSMPGNDTY 549
+NVEA+++ S + YR++ QLR+ + +YG + N + +R++ G D
Sbjct: 442 RTINVEAERRDPNSVWSFYRQMIQLRKANELFVYGTYDLLLENHPSIYAYTRTL-GRDRA 500
Query: 550 IVLINF 555
+V++N
Sbjct: 501 LVVVNL 506
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 251 bits (643), Expect = 2e-76
Identities = 116/383 (30%), Positives = 177/383 (46%), Gaps = 57/383 (14%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
Y +YY+W+ GK + + PNNW + FSGSAW YDE +YLH FS KQPDLN+ ++K+
Sbjct: 121 KYRDYYIWRPGK---EGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKV 177
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
++ + +++FWL+KGIDG+R+D + + + + + S H + P
Sbjct: 178 RQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSG------HKHFMNGP 231
Query: 129 ELYEILVKWRALVDEYKQKT-GHTRILIV-E-SYTDIENTMKYFKYNGRPAAHY---PFN 182
+++ L E ++ H I+ V E E Y F
Sbjct: 232 NIHKYL-------HEMNEEVLSHYDIMTVGEMPGVTTEEAKLYT----GEERKELQMVFQ 280
Query: 183 FQLV-LDPDKGERALV--LILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLG 239
F+ + LD +G + V L + +K Q L G ++ ++NHD PRV +R G
Sbjct: 281 FEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQ--KALEHTGWNSLYWNNHDQPRVVSRFG 338
Query: 240 ------KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRNDERRDPN---------NA 283
E A + +M G Y G+EIGM DE RD
Sbjct: 339 NDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVME 398
Query: 284 GGARADET--------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKAD 335
G ++ RD RTPMQWD HAGF+T + W+ VNPNY +NV+ +
Sbjct: 399 RGEDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTG-EPWITVNPNYKEINVKQAIQNK 457
Query: 336 WSTYKLYRKLSQLRRT-DTMIYG 357
S + Y+KL +LR+ + ++YG
Sbjct: 458 DSIFYYYKKLIELRKNNEIVVYG 480
Score = 125 bits (317), Expect = 8e-31
Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 394 DNHDNPRVTNRLG------KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRNDERRD 446
+NHD PRV +R G E A + +M G Y G+EIGM DE RD
Sbjct: 326 NNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRD 385
Query: 447 PN---------NAGGARADET--------RDPERTPMQWDSTKHAGFSTARKTWLPVNPN 489
G ++ RD RTPMQWD HAGF+T + W+ VNPN
Sbjct: 386 IETLNMYKEKVMERGEDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTG-EPWITVNPN 444
Query: 490 YYYLNVEAQKKADWSTYKLYRKLSQLRRT-DTMIYGAVSTHILNGEWVLGLSRSMPGNDT 548
Y +NV+ + S + Y+KL +LR+ + ++YG+ + N + R+ G +
Sbjct: 445 YKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVYGSYDLILENNPSIFAYVRTY-GVEK 503
Query: 549 YIVLINF 555
+V+ NF
Sbjct: 504 LLVIANF 510
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 238 bits (611), Expect = 5e-72
Identities = 114/388 (29%), Positives = 172/388 (44%), Gaps = 83/388 (21%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
+YY+W + PN+ S+F GSAW YD+ +YLH FS KQPDLN+ + L
Sbjct: 121 SERDYYIWCD--------QPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANL 172
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
++ + ++ FW+DKGI G+R+D + + K P + ++ P
Sbjct: 173 RQKIYDMMNFWIDKGIGGFRMDVIDMI-----GKI----PAQH-----------IVSNGP 212
Query: 129 ELYEILVKWRALVDEYKQKT-GHTRILIV-E-SYTDIENTMKYFKYNGRPAAHY---PFN 182
+L+ L E + G +L V E E +Y P H F
Sbjct: 213 KLHAYL-------KEMNAASFGQHDLLTVGETWGATPEIAKQYS----NPVNHELSMVFQ 261
Query: 183 FQLV-----LDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNR 237
F+ + + K + L + + +K Q + +G ++ ++NHD PRV +
Sbjct: 262 FEHIGLQHKPEAPKWDYVKELNVPALKTIFNKWQ-TELELGQGWNSLFWNNHDLPRVLSI 320
Query: 238 LG----------KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRNDERRDPN----- 281
G K LA ++ LM G Y G+EIGM P +E D
Sbjct: 321 WGNTGKYREKSAKALA----ILLHLMRGTPYIYQGEEIGMTNYPFKDLNELDDIESLNYA 376
Query: 282 ---NAGGARADET--------RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEA 330
G + RD RTPMQWD++++AGFSTA KTWLPVNPNY +NV+A
Sbjct: 377 KEAFTNGKSMETIMDSIRMIGRDNARTPMQWDASQNAGFSTADKTWLPVNPNYKDINVQA 436
Query: 331 QKKADWSTYKLYRKLSQLRRT-DTMIYG 357
K S + Y++L QLR+ D ++
Sbjct: 437 ALKNSNSIFYTYQQLIQLRKENDWLVDA 464
Score = 126 bits (319), Expect = 3e-31
Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 34/190 (17%)
Query: 394 DNHDNPRVTNRLG----------KELADAYLMISLLMPGVGVTYYGDEIGME-GPLVRND 442
+NHD PRV + G K LA ++ LM G Y G+EIGM P +
Sbjct: 310 NNHDLPRVLSIWGNTGKYREKSAKALA----ILLHLMRGTPYIYQGEEIGMTNYPFKDLN 365
Query: 443 ERRDPN--------NAGGARADET--------RDPERTPMQWDSTKHAGFSTARKTWLPV 486
E D G + RD RTPMQWD++++AGFSTA KTWLPV
Sbjct: 366 ELDDIESLNYAKEAFTNGKSMETIMDSIRMIGRDNARTPMQWDASQNAGFSTADKTWLPV 425
Query: 487 NPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT-DTMIYGAVSTHILNGEWVLGLSRSMPG 545
NPNY +NV+A K S + Y++L QLR+ D ++ + + V R +
Sbjct: 426 NPNYKDINVQAALKNSNSIFYTYQQLIQLRKENDWLVDADF-ELLPTADKVFAYLRKV-R 483
Query: 546 NDTYIVLINF 555
+ Y++++N
Sbjct: 484 EERYLIVVNV 493
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 237 bits (608), Expect = 4e-71
Identities = 93/399 (23%), Positives = 152/399 (38%), Gaps = 64/399 (16%)
Query: 9 PYDEYYVWKEGKGVNKTE---PPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRS 65
P +++ W+ KG + PPNNW S F GSAWT+DE + FYL F + QPDLN+ +
Sbjct: 130 PKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRLFCSTQPDLNWEN 189
Query: 66 KKLQEAM-EAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKT 124
+ ++A+ E+ + +WLD G+DG+RID + D + T
Sbjct: 190 EDCRKAIYESAVGYWLDHGVDGFRIDVGSLYSKVVGLPDAPVVDKNSTWQS----SDPYT 245
Query: 125 TDLPELYEILVKWRALVDEYKQKT--GHTRILIVE-SYTDIENTMKYFKYNGRPAAHYPF 181
+ P ++E + + + + G + + E + E Y + F
Sbjct: 246 LNGPRIHEFH---QEMNQFIRNRVKDGREIMTVGEMQHASDETKRLYTSASRH-ELSELF 301
Query: 182 NFQLV-LDPDKGERALVLILNHYMKVKSKNQFKDNL--------PAEGTSNWVYDNHDNP 232
NF + R + + + K +K L + S +NHD P
Sbjct: 302 NFSHTDVGTSPLFRY------NLVPFELK-DWKIALAELFRYINGTDCWSTIYLENHDQP 354
Query: 233 RVTNRLG-------KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRN-DERRDPN--- 281
R R G ++ + G Y G E+G ++ D
Sbjct: 355 RSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINFKNWPVEKYEDVEIRN 414
Query: 282 ------NAGGARADET-----------RDPERTPMQWD-STKHAGFSTAR-KTWLPVNPN 322
G ++E RD RTPMQW +AGFS K W +N +
Sbjct: 415 NYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSGPSAKPWFYLNDS 474
Query: 323 YY-YLNVEAQKKADWSTYKLYRKLSQLRRT--DTMIYGA 358
+ +NVE + K S +++ + R+ D +YG
Sbjct: 475 FREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYGY 513
Score = 109 bits (275), Expect = 2e-25
Identities = 44/196 (22%), Positives = 71/196 (36%), Gaps = 35/196 (17%)
Query: 394 DNHDNPRVTNRLG-------KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRN-DERR 445
+NHD PR R G ++ + G Y G E+G ++
Sbjct: 349 ENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINFKNWPVEKYE 408
Query: 446 DPN---------NAGGARADET-----------RDPERTPMQWD-STKHAGFSTAR-KTW 483
D G ++E RD RTPMQW +AGFS K W
Sbjct: 409 DVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSGPSAKPW 468
Query: 484 LPVNPNYY-YLNVEAQKKADWSTYKLYRKLSQLRRT--DTMIYGAVSTHIL-NGEWVLGL 539
+N ++ +NVE + K S +++ + R+ D +YG I + + +
Sbjct: 469 FYLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSF 528
Query: 540 SRSMPGNDTYIVLINF 555
++ N T +NF
Sbjct: 529 TKKY-NNKTLFAALNF 543
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 227 bits (581), Expect = 1e-66
Identities = 64/372 (17%), Positives = 124/372 (33%), Gaps = 71/372 (19%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQF-SAKQPDLNFRSKK 67
++ + K+ K N P + +D + ++ F + DLN+
Sbjct: 287 SSEKLALNKDFKLTNAGNP----------ANIMFDSQQITYFHSHFCTDWFADLNYGPVD 336
Query: 68 L------QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIH 121
+A+ + W+ +G+DG R+DA+KH++ + ++
Sbjct: 337 QAGESPAYQAIADAAKGWIARGVDGLRLDAVKHIYHSETSEE------------------ 378
Query: 122 DKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPF 181
+ L A + +I E ++ + Y+K + F
Sbjct: 379 ----NPRFLKMFYEDMNAYYKQKGHT--DDFYMIGEVLSEYDKVAPYYK-GLPALFEFSF 431
Query: 182 NFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGKE 241
++L + + S Q N ++ NHD R +++LGK
Sbjct: 432 WYRLEWGINNSTGCYFA-----KDILSYQQKYANYRSDYIEATKLSNHDEDRTSSKLGKS 486
Query: 242 LADAYLMISLL--MPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPM 299
L ++L G YYG+E+G+ G + R+PM
Sbjct: 487 ADKCKLAAAVLLTSAGHPYIYYGEELGLYGTKDNG-----------------DEYVRSPM 529
Query: 300 QWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT-DTMIYGA 358
W + ++ T V+ N V Q+ S +Y L++LR T + G
Sbjct: 530 LWGDSYTTNYTDK--TDATVSKN--VKTVADQQADTHSLLNIYFSLTRLRNTYPALAEGN 585
Query: 359 VSTHILNGEWVL 370
++ H + E
Sbjct: 586 MTKHSVYNESQE 597
Score = 130 bits (329), Expect = 4e-32
Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 32/181 (17%)
Query: 395 NHDNPRVTNRLGKELADAYLMISLL--MPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 452
NHD R +++LGK L ++L G YYG+E+G+ G
Sbjct: 473 NHDEDRTSSKLGKSADKCKLAAAVLLTSAGHPYIYYGEELGLYGTKDNG----------- 521
Query: 453 ARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKL 512
+ R+PM W + ++ T V+ N V Q+ S +Y L
Sbjct: 522 ------DEYVRSPMLWGDSYTTNYTDK--TDATVSKN--VKTVADQQADTHSLLNIYFSL 571
Query: 513 SQLRRT-DTMIYGAVSTHILNGEW-------VLGLSRSMPGNDTYIVLINFNSIIEEVDL 564
++LR T + G ++ H + E + + N+ +V+ NF ++ L
Sbjct: 572 TRLRNTYPALAEGNMTKHSVYNESQEKDYKPIAAWYMTK-DNEKLLVIHNFGGTAMQLPL 630
Query: 565 S 565
+
Sbjct: 631 T 631
Score = 90.2 bits (224), Expect = 4e-19
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 27/109 (24%)
Query: 9 PYDEYYVWKEGKGVNKTE---PPNNWVSVFSGSAWTYD----ENRKMFYLHQFS------ 55
PY YY + E + +A + E + L +F+
Sbjct: 149 PYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDETAAVKGLLKFTLDWSNA 208
Query: 56 --------------AKQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRID 90
PD + K E + + + DKG + + +
Sbjct: 209 PSPILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELT 257
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 148 bits (376), Expect = 1e-39
Identities = 48/322 (14%), Positives = 97/322 (30%), Gaps = 86/322 (26%)
Query: 54 FSAKQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGS 113
FS + + ++ L FWL G+DG+++ ++++ +A F E
Sbjct: 113 FSTQVDTVA-------TKVKDALEFWLQAGVDGFQVRDIENLKDASSFLAE--------- 156
Query: 114 MNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNG 173
W+ + + + ++ + +D++ +
Sbjct: 157 -----------------------WQNITKGF---SEDRLLIAGTNSSDLQQILSLL---- 186
Query: 174 RPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPR 233
+ D ++ Y N +W
Sbjct: 187 ESNKDLLLTSSYLSDSGSTGEHTKSLVTQY----------LNATGNRWCSWSLSQAR--L 234
Query: 234 VTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRD 293
+T+ L +L Y ++ +PG V YGDEIG++ A +
Sbjct: 235 LTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLD-------------AAALPG----QP 277
Query: 294 PERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT-D 352
E M WD + +P + V+ Q + S L+R+LS R
Sbjct: 278 MEAPVMLWDESSFP--------DIP-GAVSANMTVKGQSEDPGSLLSLFRRLSDQRSKER 328
Query: 353 TMIYGAVSTHILNGEWVLGLSR 374
++++G G + R
Sbjct: 329 SLLHGDF-HAFSAGPGLFSYIR 349
Score = 118 bits (297), Expect = 6e-29
Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 29/173 (16%)
Query: 395 NHDNPR-VTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGA 453
+ R +T+ L +L Y ++ +PG V YGDEIG++ A
Sbjct: 228 SLSQARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLD-------------AAALP 274
Query: 454 RADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLS 513
+ E M WD + +P + V+ Q + S L+R+LS
Sbjct: 275 G----QPMEAPVMLWDESSFP--------DIP-GAVSANMTVKGQSEDPGSLLSLFRRLS 321
Query: 514 QLRRT-DTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLS 565
R ++++G G + R N+ ++V++NF + L
Sbjct: 322 DQRSKERSLLHGDF-HAFSAGPGLFSYIRHWDQNERFLVVLNFGDVGLSAGLQ 373
Score = 42.0 bits (99), Expect = 3e-04
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 15/100 (15%)
Query: 10 YDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLN-FRSKKL 68
D W + GV+ + ++ S++ + FS + + S L
Sbjct: 125 KDALEFWLQ-AGVDGF-QVRDIENLKDASSFLAEWQN---ITKGFSEDRLLIAGTNSSDL 179
Query: 69 QEA---------MEAVLRFWLDKGIDGWRIDALKHMFEAG 99
Q+ + + D G G +L +
Sbjct: 180 QQILSLLESNKDLLLTSSYLSDSGSTGEHTKSLVTQYLNA 219
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 131 bits (332), Expect = 9e-33
Identities = 57/410 (13%), Positives = 122/410 (29%), Gaps = 85/410 (20%)
Query: 8 APYDEYYVWKEGKGVNKTEPPNNWVSVFSG---SAWTYDENRKMFYLHQFSAKQPDLNFR 64
+ YY++ + + + + +F ++ E+ + + F++ Q DLN+
Sbjct: 204 LFDNFYYIFPDRRMPD--QYDRTLREIFPDQHPGGFSQLEDGR-WVWTTFNSFQWDLNYS 260
Query: 65 SKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKT 124
+ + AM + F + G+D R+DA+ +++ E
Sbjct: 261 NPWVFRAMAGEMLFLANLGVDILRMDAVAFIWKQMGTSCE-------------------- 300
Query: 125 TDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQ 184
+LP+ + ++ + A++ E+ + ++Y G+ +N
Sbjct: 301 -NLPQAHALIRAFNAVMRIAAPA----VFFKSEAIVHPDQVVQYI---GQDECQIGYNPL 352
Query: 185 L-VLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEG-TSNWVY--DNHDNPRVTNRLGK 240
L + V +L+ + + WV +HD +
Sbjct: 353 QMALLWNTLATREVNLLHQALT---------YRHNLPEHTAWVNYVRSHD--DIGWTFAD 401
Query: 241 ELADAYLMISLL----MPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADET----- 291
E A + + V + P N D +G A A
Sbjct: 402 EDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDD 461
Query: 292 -------------------------RDPERTPMQWDSTKHAGFST-ARKTWLPVNPNYYY 325
D T D ++ + S +R P Y
Sbjct: 462 PHAVDRIKLLYSIALSTGGLPLIYLGDEVGTLNDDDWSQDSNKSDDSRWAHRPRYNEALY 521
Query: 326 LNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSR 374
A Y+ R + +R+++ G + T N + ++G R
Sbjct: 522 AQRNDPSTAAGQIYQDLRHMIAVRQSNPRFDGGRLVTFNTNNKHIIGYIR 571
Score = 43.3 bits (102), Expect = 2e-04
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 34/151 (22%)
Query: 416 ISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAG 475
I+L G+ + Y GDE+G ND+ + ++D++R R
Sbjct: 474 IALSTGGLPLIYLGDEVGT-----LNDDDWSQD---SNKSDDSRWAHRPRYNE------- 518
Query: 476 FSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHILNGE 534
Y N + Y+ R + +R+++ G + T N +
Sbjct: 519 ------------ALYAQRNDPSTAAG--QIYQDLRHMIAVRQSNPRFDGGRLVTFNTNNK 564
Query: 535 WVLGLSRSMPGNDTYIVLINFNSIIEEVDLS 565
++G R N+ + NF+ + V
Sbjct: 565 HIIGYIR----NNALLAFGNFSEYPQTVTAH 591
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 131 bits (332), Expect = 9e-33
Identities = 56/454 (12%), Positives = 124/454 (27%), Gaps = 142/454 (31%)
Query: 5 AGIAPYDEYYVWKEGKGVNKTEPPNNWVSVFSG-------SAWTYDENRKMFYLHQFSAK 57
AG A Y +YY + P+ + + +T+ ++ + F
Sbjct: 193 AGDARYLDYYHHFADRT-----VPDRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFYPY 247
Query: 58 QPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYD 117
Q DLN+ + + M + + G++ +R+D+ ++++ + G +
Sbjct: 248 QWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWK---------RIGTDC----- 293
Query: 118 DLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYF--KYNGRP 175
+ E + +LV RA+ D ++ E+ + YF +
Sbjct: 294 -------MNQSEAHTLLVALRAVTDIVAPA----VVMKAEAIVPMTQLPPYFGSGVDEGH 342
Query: 176 AAHYPFNFQLV------------------------------------------LDPDKGE 193
H ++ L+ + + E
Sbjct: 343 ECHLAYHSTLMAAGWSALALQRGDILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHE 402
Query: 194 RALVLILNHYMKVKSKNQFKDNLPAEGTSNWVY-DNHDNPRVTNRLGKELADA------- 245
+ + + +P + + D TN + LA
Sbjct: 403 ACGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAALAGIQAAQEAG 462
Query: 246 -----------YLMISLLM---PGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADET 291
+++ + PGV + Y GDE+ M ND
Sbjct: 463 DAAALAVAVDRLVLLYAIALAMPGVPLIYMGDELAM-----VNDP-----------GYRD 506
Query: 292 RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKK----ADWSTYKLYRKLSQ 347
+ +W ++ + AQ+ + Y+ R L +
Sbjct: 507 DPHRQHEGRW-----------------LHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIR 549
Query: 348 LRRTDTMIYGAVSTHILNG--EWVLGLSRAANML 379
R + + + V L+R + +
Sbjct: 550 QRAALGALAADQALASIALNDPRVFALTRGDSFI 583
Score = 47.6 bits (113), Expect = 1e-05
Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 44/190 (23%)
Query: 382 EMKRERAKFEAYDNHDNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRN 441
M A +A + L Y + L MPGV + Y GDE+ M N
Sbjct: 447 GMAAALAGIQAAQEAGDAAALAVAVDRLVLLYAIA-LAMPGVPLIYMGDELAM-----VN 500
Query: 442 DERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKK- 500
D + +W ++ + AQ+
Sbjct: 501 DP-----------GYRDDPHRQHEGRW-----------------LHRPAMDWQLAAQRHD 532
Query: 501 ---ADWSTYKLYRKLSQLRRTDTMIYGAVSTHILNG--EWVLGLSRSMPGNDTYIVLINF 555
+ Y+ R L + R + + + V L+R D++I L NF
Sbjct: 533 AKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTR----GDSFIALHNF 588
Query: 556 NSIIEEVDLS 565
+ + +V+L+
Sbjct: 589 SDQLLDVELA 598
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 116 bits (293), Expect = 1e-27
Identities = 43/337 (12%), Positives = 102/337 (30%), Gaps = 48/337 (14%)
Query: 5 AGIAPY-DEYYVWKEGKGVNKTEP--PNNWVSVFSGSAWTYDE----NRKMFYLHQFSAK 57
AG Y ++++ + +G + E P + F+ +++DE + F++
Sbjct: 198 AGDPKYRAYFHLFPDRRGPDAFEATLPEIF-PDFAPGNFSWDEEIGEGEGGWVWTTFNSY 256
Query: 58 QPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYD 117
Q DLN+ + + ++ + ++G++ +R+DA+ +++ +
Sbjct: 257 QWDLNWANPDVFLEFVDIILYLANRGVEVFRLDAIAFIWKRLGTDCQ------------- 303
Query: 118 DLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYF--KYNGRP 175
+ PE++ + RA E+ + + Y + +
Sbjct: 304 --------NQPEVHHLTRALRAAARIVAPA----VAFKAEAIVAPADLIHYLGTRAHHGK 351
Query: 176 AAHYPFNFQL-VLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHD---- 230
+ ++ L V + ++ F + +V HD
Sbjct: 352 VSDMAYHNSLMVQLWSSLASRNTRLFEEALR-----AFPPKPTSTTWGLYV-RCHDDIGW 405
Query: 231 --NPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARA 288
+ R G A +S G + + + V D R + A A
Sbjct: 406 AISDEDAARAGLNGAAHRHFLSDFYSGQFPGSFARGLVFQYNPVNGDRRISGSAASLAGL 465
Query: 289 DETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYY 325
+ + D+ + P Y
Sbjct: 466 EAALETGDPGRIEDAVRRLLLLHTVILGFGGVPLLYM 502
Score = 47.6 bits (113), Expect = 9e-06
Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 33/180 (18%)
Query: 390 FEAYDNHDNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNN 449
A + D R+ + + + L +++ GV + Y GDE+ + D
Sbjct: 466 EAALETGDPGRIEDAVRRLLLLHTVILG--FGGVPLLYMGDELALLNDYAFED------- 516
Query: 450 AGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLY 509
+W ++ A + +
Sbjct: 517 ---------VPEHAPDNRWVHRPQMDWALAER------------VRQEPSSPAGRVNTGL 555
Query: 510 RKLSQLRRTDTMIYGAVSTHILNG--EWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSVM 567
R L ++RR ++ ++ + +L L L R P + + NF+ + V+
Sbjct: 556 RHLLRVRRDTPQLHASIESQVLPSPDSRALLLRRDHPL-GGMVQVYNFSEETVMLPSHVL 614
Score = 40.3 bits (94), Expect = 0.002
Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 30/124 (24%)
Query: 227 DNHDNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGA 286
+ D R+ + + + L +++ GV + Y GDE+ + D
Sbjct: 470 ETGDPGRIEDAVRRLLLLHTVILG--FGGVPLLYMGDELALLNDYAFED----------- 516
Query: 287 RADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLS 346
+W ++ A + + R L
Sbjct: 517 -----VPEHAPDNRWVHRPQMDWALAER------------VRQEPSSPAGRVNTGLRHLL 559
Query: 347 QLRR 350
++RR
Sbjct: 560 RVRR 563
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 111 bits (280), Expect = 5e-26
Identities = 62/360 (17%), Positives = 112/360 (31%), Gaps = 121/360 (33%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSA--------WTYDENRKMFYLHQFSAK-QP 59
PY E + + E + G Y N K FY F+
Sbjct: 355 PYWEMFSFLSPPP---KEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMA 411
Query: 60 DLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDL 119
N + + + + +FW+DKGIDG+RID +
Sbjct: 412 KFNHDNPRTVDYFIDITKFWIDKGIDGFRIDV------------------------AMGI 447
Query: 120 IHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHY 179
+ + ++ + +++ E + M YF A +Y
Sbjct: 448 HYS----------WMKQYYEYIKNTYPD----FLVLGELAENPRIYMDYF----DSAMNY 489
Query: 180 PFNFQLV-------LDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNP 232
++ +D ++ + + + K+ + + N+ +HD P
Sbjct: 490 YLRKAILELLIYKRIDLNEFISRINNVYAYIPHYKALSLY--NM---------LGSHDVP 538
Query: 233 RVTNRLG-KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADET 291
R+ + + +L ++ +PG V YYGDEIG+EG RDP+N
Sbjct: 539 RIKSMVQNNKLLKLMYVLIFALPGSPVIYYGDEIGLEG-------GRDPDN--------- 582
Query: 292 RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
R PM WD D Y+ +KL ++ ++
Sbjct: 583 ----RRPMIWDRGNW----------------------------DLELYEHIKKLIRIYKS 610
Score = 74.8 bits (184), Expect = 3e-14
Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 52/174 (29%)
Query: 394 DNHDNPRVTNRLG-KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 452
+HD PR+ + + +L ++ +PG V YYGDEIG+EG RDP+N
Sbjct: 533 GSHDVPRIKSMVQNNKLLKLMYVLIFALPGSPVIYYGDEIGLEG-------GRDPDN--- 582
Query: 453 ARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKL 512
R PM WD D Y+ +KL
Sbjct: 583 ----------RRPMIWDRGNW----------------------------DLELYEHIKKL 604
Query: 513 SQLRRT-DTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLS 565
++ ++ +M +G L +L + R + N+ I L+N +S VDL
Sbjct: 605 IRIYKSCRSMRHGYFLVENLGSN-LLFIKRWI-NNEEIIFLLNVSSKDISVDLK 656
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 102 bits (256), Expect = 2e-23
Identities = 39/342 (11%), Positives = 92/342 (26%), Gaps = 87/342 (25%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVF---SGSAWTYDE--NRKMFYLHQFSAKQPDLNF 63
Y ++ N + ++ G +T+ + + F+ +Q D++
Sbjct: 107 EYYPMFLTMSSVFPN-GATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDT 165
Query: 64 RSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDK 123
S K E + ++ + R+DA+ + + + G M
Sbjct: 166 DSDKGWEYLMSIFDQMAASHVSYIRLDAVGYGAK---------EAGTSCFM--------- 207
Query: 124 TTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKY------------ 171
P+ ++++ + R + +++E ++ + ++
Sbjct: 208 ---TPKTFKLISRLREEGVKRG------LEILIEVHSYYKKQVEIASKVDRVYDFALPPL 258
Query: 172 --------NGRPAAH-------YPFNFQLVLD----PDKGERALVLILNHYMKVKSKNQF 212
+ P AH D D G L L + + +
Sbjct: 259 LLHALSTGHVEPVAHWTDIRPNNAVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNL 318
Query: 213 KDNLPAEGTSNWV--YDNHDNPRVTNRLGKELADA-------YLM---ISLLMPGVGVTY 260
+ + A + ++ A Y+ + +PGV Y
Sbjct: 319 VNTIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQHYIAARAVQFFLPGVPQVY 378
Query: 261 YGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWD 302
Y + + ND + + RD R
Sbjct: 379 YVGALAGK-----ND------MELLRKTNNGRDINRHYYSTA 409
Score = 41.7 bits (98), Expect = 6e-04
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 14/62 (22%)
Query: 411 DAYLM---ISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQ 467
Y+ + +PGV YY + + ND + + RD R
Sbjct: 359 QHYIAARAVQFFLPGVPQVYYVGALAGK-----ND------MELLRKTNNGRDINRHYYS 407
Query: 468 WD 469
Sbjct: 408 TA 409
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 102 bits (255), Expect = 3e-23
Identities = 54/358 (15%), Positives = 109/358 (30%), Gaps = 120/358 (33%)
Query: 8 APYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKK 67
+PY ++Y K P + + + AW + + P L +
Sbjct: 139 SPYRDWYHVKG-------FPLKAYTAHPNYEAW------------WGNPELPKLKVETPA 179
Query: 68 LQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDL 127
++E + AV W+ G+DGWR+D + +
Sbjct: 180 VREYLLAVAEHWIRFGVDGWRLDVPNEIPDP----------------------------- 210
Query: 128 PELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPF------ 181
++R V + ++ E + + + ++ ++ +YP
Sbjct: 211 ----TFWREFRQRVKGANPEA----YIVGEIWEEADFWLQGDMFDA--VMNYPLARAVLG 260
Query: 182 -----NFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVY-DNHDNPRVT 235
L G + + + ++ F P + +HD PR+
Sbjct: 261 FVGGEALDRDLAAQTGLGRIEPLQALAFSHRLEDLFGRYRPEVVRAQMNLLTSHDTPRLL 320
Query: 236 NRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRD 293
+ + + A L ++LL PG YYG+E+GM G +DP N
Sbjct: 321 SLMRGSVERARLALALLFLLPGNPTVYYGEEVGMAG-------GKDPEN----------- 362
Query: 294 PERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
R M W+ + + + ++L++LR+
Sbjct: 363 --RGGMVWE----------------------------EARWQKDLRETVKRLARLRKE 390
Score = 70.8 bits (174), Expect = 4e-13
Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 57/176 (32%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
+HD PR+ + + + A L ++LL PG YYG+E+GM G +DP N
Sbjct: 312 TSHDTPRLLSLMRGSVERARLALALLFLLPGNPTVYYGEEVGMAG-------GKDPEN-- 362
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
R M W+ + + + ++
Sbjct: 363 -----------RGGMVWE----------------------------EARWQKDLRETVKR 383
Query: 512 LSQLRRT-DTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566
L++LR+ + L +R Y+ ++N + D +
Sbjct: 384 LARLRKEHPALRTAPYLRIYAQDG-HLAFAR-----GPYLAVVNASPHPFRQDFPL 433
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 95.3 bits (237), Expect = 6e-21
Identities = 42/280 (15%), Positives = 78/280 (27%), Gaps = 65/280 (23%)
Query: 11 DEYYVWKEGKGVNKTEPPN-NWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQ 69
D + W G + E + + F G +D + D+++ +
Sbjct: 150 DFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVV 209
Query: 70 EAMEAVLRFWLDK-GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+ ++ ++ +DG+RIDA KH+ F
Sbjct: 210 AETKKWGIWYANELSLDGFRIDAAKHI--KFSF--------------------------- 240
Query: 129 ELYEILVKWRALVDEYKQKTGHTRILIV-ESY-TDIENTMKYFKYNGRPAA--HYPFNFQ 184
R V +Q TG + V E + + Y + P +F
Sbjct: 241 --------LRDWVQAVRQATGK-EMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFN 291
Query: 185 LVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVY--DNHDNPRVTNRLG--- 239
L + + + + V +NHD +
Sbjct: 292 LQ-AASSQGGGYDM----------RRLLDGTVVSRHPEKAVTFVENHDTQPGQSLESTVQ 340
Query: 240 ---KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDE 276
K LA A+++ G +YGD G +G +
Sbjct: 341 TWFKPLAYAFIL--TRESGYPQVFYGDMYGTKGTSPKEIP 378
Score = 47.5 bits (113), Expect = 8e-06
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 394 DNHDNPRVTNRLG------KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDE 443
+NHD + K LA A+++ G +YGD G +G +
Sbjct: 325 ENHDTQPGQSLESTVQTWFKPLAYAFIL--TRESGYPQVFYGDMYGTKGTSPKEIP 378
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 95.3 bits (237), Expect = 6e-21
Identities = 40/285 (14%), Positives = 83/285 (29%), Gaps = 71/285 (24%)
Query: 14 YVWKEGKGVNKTEPPN-----NWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
+ W GV+ E + + W D + + DL+ ++
Sbjct: 156 WRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMY----ADLDMDHPEV 211
Query: 69 QEAMEAVLRFWLDK-GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDL 127
+++ +++++ IDG+R+DA+KH+ F
Sbjct: 212 VTELKSWGKWYVNTTNIDGFRLDAVKHI--KFSF-------------------------- 243
Query: 128 PELYEILVKWRALVDEYKQKTGHTRILIVESY-TDIENTMKYFKYNGRPAA--HYPFNFQ 184
+ + + +TG + E + DI Y + P + +
Sbjct: 244 ---------FPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKTNGTMSLFDAPLHNK 294
Query: 185 LVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWV--YDNHDNPRVTNRLG--- 239
G + + L + + V DNHD
Sbjct: 295 FYTASKSGG-----------TFDMRTLMTNTLMKDQPTLAVTFVDNHDTEPGQALQSWVD 343
Query: 240 ---KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPN 281
K LA A+++ G +YGD G+ + + + +
Sbjct: 344 PWFKPLAYAFIL--TRQEGYPCVFYGDYYGIPQYNIPSLKSKIDP 386
Score = 44.4 bits (105), Expect = 7e-05
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 394 DNHDNPRVTNRLG------KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDP 447
DNHD K LA A+++ G +YGD G+ + + + +
Sbjct: 328 DNHDTEPGQALQSWVDPWFKPLAYAFIL--TRQEGYPCVFYGDYYGIPQYNIPSLKSKID 385
Query: 448 N 448
Sbjct: 386 P 386
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 94.9 bits (236), Expect = 1e-20
Identities = 54/354 (15%), Positives = 100/354 (28%), Gaps = 87/354 (24%)
Query: 8 APYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKK 67
P ++ + P V + + + F F PDLN +
Sbjct: 234 LPTPDWINYGGKFV------PTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQTNPL 287
Query: 68 LQEAMEAVLRFWLDK-GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTD 126
+ + +W++ G+ G RID + F
Sbjct: 288 VANYLIQNNIWWIEYAGLSGLRIDTYGYSDG--AF------------------------- 320
Query: 127 LPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLV 186
L ++ + + ++ + ++ + ++ Y + +
Sbjct: 321 -------LTEYTRRLMAEYPRL----NMVGQEWSTRVPVVARWQRGKANFDGYTSHLPSL 369
Query: 187 LD-PDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVY------DNHDNPRVTNRLG 239
+D P A+ L+ + N+ + L + NHD R+ + G
Sbjct: 370 MDFPLV--DAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAG 427
Query: 240 KELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERT 297
++ + + LM P + Y GDEI M R D + R D
Sbjct: 428 EDFDRWRMNLVFLMTMPRIPQFYSGDEILMTST---VKGRDDASY----RRD-------F 473
Query: 298 PMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
P W K FS A T + L RKL+ R+
Sbjct: 474 PGGWAGDKANAFSGAGLT-----------------SQQRAAQDLVRKLANWRKN 510
Score = 76.4 bits (188), Expect = 8e-15
Identities = 40/217 (18%), Positives = 63/217 (29%), Gaps = 38/217 (17%)
Query: 356 YGAVSTHILNGEWVLGLSRAANMLLTEMKRERAKFEA--YDNHDNPRVTNRLGKELADAY 413
A+ + GL+ L + + NHD R+ + G++
Sbjct: 375 VDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDRWR 434
Query: 414 LMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDST 471
+ + LM P + Y GDEI M R D + R D P W
Sbjct: 435 MNLVFLMTMPRIPQFYSGDEILMTST---VKGRDDASY----RRD-------FPGGWAGD 480
Query: 472 KHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMI-YGAVSTHI 530
K FS A T + L RKL+ R+ +I G +
Sbjct: 481 KANAFSGAGLT-----------------SQQRAAQDLVRKLANWRKNQPVIHNGRLMHFG 523
Query: 531 LNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSVM 567
R + +V +N N + +
Sbjct: 524 PEEN-TWVYFRYN-KDKRIMVAMNNNDKPMTLPTARF 558
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 89.7 bits (223), Expect = 4e-19
Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 105/338 (31%)
Query: 30 NWVSVFSGSAWTYDENRKMFYL-HQFSAKQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWR 88
NW + Y+ Y+ + P+ N + +++E + + +WL GIDGWR
Sbjct: 149 NWFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWLKFGIDGWR 208
Query: 89 IDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKT 148
+D ++R +
Sbjct: 209 LDVPFE---------------------IKT------------PGFWQEFRDRTKAINPEA 235
Query: 149 GHTRILIVESYTDIENTMKYFKYNGRPAA-HYPFNFQLVLDPDKGERALVLILNHYMKVK 207
++ E + D + ++ +Y F + L + + +
Sbjct: 236 ----YIVGEVWGD---SRQWLDGTQFDGVMNYLFAGPTIAFAAGDRVVLEQVQSRDYQPY 288
Query: 208 SK----------NQFKDNLPAEGTSNWV--YDNHDNPRVTNRLGKELADAYLMISLLM-- 253
+ P E + +HD R+ G ++A L LL+
Sbjct: 289 PPLFAAEYATKIQEVLQLYPWEIQLTQLNLLASHDTARLMTIAGGDIASVELSTLLLLTF 348
Query: 254 PGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTAR 313
PG YYGDE+G+ G DP++ R ++
Sbjct: 349 PGAPSIYYGDEVGLPG-------GIDPDS-------------RRGFPLEA---------- 378
Query: 314 KTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
+ + +R+L +R+T
Sbjct: 379 -------------------NWNQEIFNTHRQLITIRQT 397
Score = 70.8 bits (174), Expect = 3e-13
Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 54/176 (30%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
+HD R+ G ++A L LL+ PG YYGDE+G+ G DP++
Sbjct: 320 ASHDTARLMTIAGGDIASVELSTLLLLTFPGAPSIYYGDEVGLPG-------GIDPDS-- 370
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
R ++ + + +R+
Sbjct: 371 -----------RRGFPLEA-----------------------------NWNQEIFNTHRQ 390
Query: 512 LSQLRRT-DTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566
L +R+T + G G+ + +R++ G + I+ IN + ++ V
Sbjct: 391 LITIRQTYPALRTGDYQVLYAQGQ-LYLFARTL-GTEELIIAINAGTSSATANVDV 444
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 89.0 bits (221), Expect = 8e-19
Identities = 51/299 (17%), Positives = 92/299 (30%), Gaps = 102/299 (34%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
P L + +++E + V RFW+++GIDGWR+D ++
Sbjct: 294 PKLRTENPEVKEYLFDVARFWMEQGIDGWRLDV------------------------ANE 329
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAA- 177
+ H ++R LV +++ E + D + + +
Sbjct: 330 VDHA----------FWREFRRLVKSLNPDA----LIVGEIWHD---ASGWLMGDQFDSVM 372
Query: 178 HYPFNFQL---VLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRV 234
+Y F + + L + + + + D+HD R
Sbjct: 373 NYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWN-------LLDSHDTERF 425
Query: 235 TNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETR 292
G A L + M G + YYGDEIGM G DP+
Sbjct: 426 LTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG-------ATDPDC---------- 468
Query: 293 DPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
PM W+ +K+ + ++ Y++L +LR
Sbjct: 469 ---LRPMIWE----------------------------EKEQNRGLFEFYKELIRLRHR 496
Score = 72.4 bits (178), Expect = 2e-13
Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 53/177 (29%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
D+HD R G A L + M G + YYGDEIGM G DP+
Sbjct: 418 DSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGMAG-------ATDPDC-- 468
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
PM W+ +K+ + ++ Y++
Sbjct: 469 -----------LRPMIWE----------------------------EKEQNRGLFEFYKE 489
Query: 512 LSQLRRT-DTMIYGAVST-HILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566
L +LR ++ G V + H + R++ + V++N + V L V
Sbjct: 490 LIRLRHRLASLTRGNVRSWHADKQANLYAFVRTV-QDQHVGVVLNNRGEKQTVLLQV 545
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 88.2 bits (219), Expect = 9e-19
Identities = 49/378 (12%), Positives = 95/378 (25%), Gaps = 133/378 (35%)
Query: 10 YDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQ 69
+ +Y +G T +W + DL++ +L
Sbjct: 120 PEWFYHDADG---QLTNKVGDW------------------------SDVKDLDYGHHELW 152
Query: 70 EAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPE 129
+ L +W + +DG+R D + DF
Sbjct: 153 QYQIDTLLYW-SQFVDGYRCDVAPLVPL--DF---------------------------- 181
Query: 130 LYEILVKWRALVDEYKQKTGHTRILIV-ESYTD-IENTMKYFKYNGRPAAHYPFNFQLVL 187
W + K + L + ES ++ Y G + F +
Sbjct: 182 -------WLEARKQVNAK--YPETLWLAESAGSGFIEELRSQGYTGLSDSELYQAFDMTY 232
Query: 188 DPDKGERALVLILNHYMKVKSKNQFKDNL-------PAEGTSNWVYDNHDNPRVTNRLG- 239
D D +++ + ++ D L P +NHDN R+ + +
Sbjct: 233 DYDVFG----DFKDYWQGRSTVERYVDLLQRQDATFPGNYVKMRFLENHDNARMMSLMHS 288
Query: 240 KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPM 299
K A L + G+ + Y G E E + + R M
Sbjct: 289 KAEAVNNLTWIFMQRGIPLIYNGQEFLAEH-------QPSLFD-------------RDTM 328
Query: 300 QWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAV 359
D L +KL +++ +
Sbjct: 329 VAD-------------------------------RHGDVTPLIQKLVTIKQLPLLRAADY 357
Query: 360 STHILNGEWVLGLSRAAN 377
+ E ++ ++ A
Sbjct: 358 -QLAVVEEGIVKITYRAA 374
Score = 66.6 bits (163), Expect = 8e-12
Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 54/174 (31%)
Query: 394 DNHDNPRVTNRLG-KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGG 452
+NHDN R+ + + K A L + G+ + Y G E E + +
Sbjct: 275 ENHDNARMMSLMHSKAEAVNNLTWIFMQRGIPLIYNGQEFLAEH-------QPSLFD--- 324
Query: 453 ARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKL 512
R M D L +KL
Sbjct: 325 ----------RDTMVAD-------------------------------RHGDVTPLIQKL 343
Query: 513 SQLRRTDTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566
+++ + + E ++ ++ + I + V +
Sbjct: 344 VTIKQLPLLRAADY-QLAVVEEGIVKITYRA-AGEALTAWIPLKGQVTAVATKL 395
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 86.0 bits (213), Expect = 8e-18
Identities = 58/341 (17%), Positives = 96/341 (28%), Gaps = 121/341 (35%)
Query: 23 NKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDK 82
N + + S+ R +F L DLN ++ + ++ ++ W+D
Sbjct: 165 NDANMYFHHNGGTTFSSLEDGIYRNLFDL-------ADLNHQNPVIDRYLKDAVKMWIDM 217
Query: 83 GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVD 142
GIDG R+DA+KHM + ++L+D
Sbjct: 218 GIDGIRMDAVKHMPF--GW-----------------------------------QKSLMD 240
Query: 143 EYKQKTGHTRILIVESYT---DIENTMKYFKYNGRPAA-HYPFNFQLV---LDPDKGERA 195
E E + +++ YF + + F +L +
Sbjct: 241 EIDNYRPV--FTFGEWFLSENEVDANNHYFANESGMSLLDFRFGQKLRQVLRNNSDNWYG 298
Query: 196 LVLILNHYMKVKSKNQFKDNLPAEGTSNWVY-DNHDNPRVTNRLGKE----LADAYLMIS 250
++ + + + + DNHD R G +A A L+
Sbjct: 299 FNQMIQDT-----ASAYDEV-----LDQVTFIDNHDMDRFMIDGGDPRKVDMALAVLL-- 346
Query: 251 LLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFS 310
GV YYG E M G DPNN R M +
Sbjct: 347 -TSRGVPNIYYGTEQYMTG-------NGDPNN-------------RKMMSSFNKNTR--- 382
Query: 311 TARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
Y++ +KLS LRR
Sbjct: 383 ---------------------------AYQVIQKLSSLRRN 396
Score = 65.2 bits (159), Expect = 3e-11
Identities = 41/169 (24%), Positives = 54/169 (31%), Gaps = 60/169 (35%)
Query: 394 DNHDNPRVTNRLGKE----LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNN 449
DNHD R G +A A L+ GV YYG E M G DPNN
Sbjct: 321 DNHDMDRFMIDGGDPRKVDMALAVLL---TSRGVPNIYYGTEQYMTG-------NGDPNN 370
Query: 450 AGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLY 509
R M + Y++
Sbjct: 371 -------------RKMMSSFNKNTR------------------------------AYQVI 387
Query: 510 RKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNS 557
+KLS LRR + + YG +NG+ V R G D +V +N +S
Sbjct: 388 QKLSSLRRNNPALAYGDTEQRWINGD-VYVYERQ-FGKDVVLVAVNRSS 434
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 85.5 bits (212), Expect = 1e-17
Identities = 50/300 (16%), Positives = 91/300 (30%), Gaps = 103/300 (34%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDK-GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYD 117
P LN + +++ + V +W+ + IDGWR+D +
Sbjct: 296 PKLNTANPEVKRYLLDVATYWIREFDIDGWRLDV------------------------AN 331
Query: 118 DLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAA 177
++ H+ ++R V K ++ E + D M + + + A
Sbjct: 332 EIDHE----------FWREFRQEVKALKPDV----YILGEIWHD---AMPWLRGDQFDAV 374
Query: 178 -HYPFNFQL---VLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPR 233
+YPF + + R + H + N + N + +HD R
Sbjct: 375 MNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAF------NLL-GSHDTSR 427
Query: 234 VTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADET 291
+ G ++ L+ + G YYGDEIGM G DP
Sbjct: 428 ILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTG-------GNDPEC--------- 471
Query: 292 RDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
R M WD + + ++ ++L LR+
Sbjct: 472 ----RKCMVWD----------------------------PMQQNKELHQHVKQLIALRKQ 499
Score = 72.4 bits (178), Expect = 1e-13
Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 53/177 (29%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
+HD R+ G ++ L+ + G YYGDEIGM G DP
Sbjct: 421 GSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMTG-------GNDPEC-- 471
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
R M WD + + ++ ++
Sbjct: 472 -----------RKCMVWD----------------------------PMQQNKELHQHVKQ 492
Query: 512 LSQLRRT-DTMIYGAVST-HILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566
L LR+ ++ G +S H + L ++ G++T +V+IN + ++ + +
Sbjct: 493 LIALRKQYRSLRRGEISFLHADDEMNYLIYKKTD-GDETVLVIINRSDQKADIPIPL 548
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 85.1 bits (211), Expect = 1e-17
Identities = 53/304 (17%), Positives = 96/304 (31%), Gaps = 111/304 (36%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDK-GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYD 117
P LN ++E + +W+ + GIDGWR+D +
Sbjct: 293 PKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDV------------------------AN 328
Query: 118 DLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAA 177
++ H ++R +V + ++ E + + + + + + A
Sbjct: 329 EVSHQ----------FWREFRRVVKQANPDA----YILGEVWHE---SSIWLEGDQFDAV 371
Query: 178 -HYPFNFQLV-------LDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNH 229
+YPF ++ D +K L L Y + S+ F NL D+H
Sbjct: 372 MNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMF--NLL---------DSH 420
Query: 230 DNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGAR 287
D R+ + + L + G YYGDE+G++G DP
Sbjct: 421 DTARLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDG-------GHDPGC----- 468
Query: 288 ADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQ 347
R M+WD + K D + Y+ + +
Sbjct: 469 --------RKCMEWD----------------------------ETKHDKDLFAFYQTVIR 492
Query: 348 LRRT 351
LR+
Sbjct: 493 LRQA 496
Score = 72.0 bits (177), Expect = 2e-13
Identities = 32/177 (18%), Positives = 54/177 (30%), Gaps = 53/177 (29%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
D+HD R+ + + L + G YYGDE+G++G DP
Sbjct: 418 DSHDTARLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLDG-------GHDPGC-- 468
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
R M+WD + K D + Y+
Sbjct: 469 -----------RKCMEWD----------------------------ETKHDKDLFAFYQT 489
Query: 512 LSQLRRT-DTMIYGAVST-HILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566
+ +LR+ + G + R DT +V++N + + L V
Sbjct: 490 VIRLRQAHAALRTGTFKFLTAEKNSRQIAYLRED-DQDTILVVMNNDKAGHTLTLPV 545
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 84.1 bits (208), Expect = 4e-17
Identities = 57/337 (16%), Positives = 95/337 (28%), Gaps = 114/337 (33%)
Query: 23 NKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDK 82
N T + S++ R +F L DLN ++ + +++ ++ WLD
Sbjct: 170 NDTNGYFHHYGGTDFSSYEDGIYRNLFDL-------ADLNQQNSTIDSYLKSAIKVWLDM 222
Query: 83 GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVD 142
GIDG R+DA+KHM + + +D
Sbjct: 223 GIDGIRLDAVKHM--PFGW-----------------------------------QKNFMD 245
Query: 143 EYKQKTGHTRILIVESYTD---IENTMKYFKYNGRPAAH-YPFNFQLV---LDPDKGERA 195
E + I+ YF + + F+ ++ D
Sbjct: 246 SILSYRPV--FTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYG 303
Query: 196 LVLILNHYMKVKSKNQFKDNLPAEGTSNWVY-DNHDNPRVTNRLGKELADAYLMISLLMP 254
L ++ + + + DNHD R N + L +L
Sbjct: 304 LDSMIQST-----ASDYNFI-----NDMVTFIDNHDMDRFYNGGSTRPVEQALAFTLTSR 353
Query: 255 GVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARK 314
GV YYG E M G DP N R M +T
Sbjct: 354 GVPAIYYGTEQYMTG-------NGDPYN-------------RAMMTSFNT---------- 383
Query: 315 TWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
+ Y + +KL+ LR++
Sbjct: 384 --------------------STTAYNVIKKLAPLRKS 400
Score = 62.9 bits (153), Expect = 2e-10
Identities = 39/165 (23%), Positives = 53/165 (32%), Gaps = 53/165 (32%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGA 453
DNHD R N + L +L GV YYG E M G DP N
Sbjct: 326 DNHDMDRFYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTG-------NGDPYN---- 374
Query: 454 RADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLS 513
R M +T + Y + +KL+
Sbjct: 375 ---------RAMMTSFNT------------------------------STTAYNVIKKLA 395
Query: 514 QLRRTDTMI-YGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNS 557
LR+++ I YG +N + V R GN+ +V IN N
Sbjct: 396 PLRKSNPAIAYGTTQQRWINND-VYIYERK-FGNNVALVAINRNL 438
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 83.7 bits (207), Expect = 4e-17
Identities = 50/313 (15%), Positives = 83/313 (26%), Gaps = 102/313 (32%)
Query: 59 PDLNFRSKK------LQEAMEAVLRFWLDK--GIDGWRIDALKHMFEAGDFKDEKYKPGK 110
P LN+ + + +V + +L+ +DGWR+DA +++ G+ +
Sbjct: 317 PKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGNNGSDVTN--- 373
Query: 111 EGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFK 170
++I ++R V +I E + +
Sbjct: 374 --------------------HQIWSEFRNAVKGVNSNA----AIIGEYWGNANPWTAQGN 409
Query: 171 -------YNG-RPAAHYPFNFQLVLDPDKGERA--LVLILNHYMKVKSKNQFKDNLPAEG 220
++G + + L N + +
Sbjct: 410 QWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQSMMN--- 466
Query: 221 TSNWVYDNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERR 278
NHD R R G +L YL + M G YYGDE GM+G
Sbjct: 467 ----FLSNHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG-------GA 515
Query: 279 DPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWST 338
DP+N R W Q S
Sbjct: 516 DPDN-------------RRSFDWS----------------------------QATPSNSA 534
Query: 339 YKLYRKLSQLRRT 351
L +KL +R
Sbjct: 535 VALTQKLITIRNQ 547
Score = 71.4 bits (175), Expect = 3e-13
Identities = 38/177 (21%), Positives = 55/177 (31%), Gaps = 53/177 (29%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
NHD R R G +L YL + M G YYGDE GM+G DP+N
Sbjct: 469 SNHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQG-------GADPDN-- 519
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
R W Q S L +K
Sbjct: 520 -----------RRSFDWS----------------------------QATPSNSAVALTQK 540
Query: 512 LSQLRRT-DTMIYGAVST-HILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566
L +R + G+ T + + R + V++N +S+ V++ V
Sbjct: 541 LITIRNQYPALRTGSFMTLITDDTNKIYSYGRFD-NVNRIAVVLNNDSVSHTVNVPV 596
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 84.0 bits (208), Expect = 4e-17
Identities = 45/291 (15%), Positives = 88/291 (30%), Gaps = 29/291 (9%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNF--RSK 66
Y Y+ + E + K P F + DE +Y + F N+ +
Sbjct: 109 RYYNYFDFYEEEE--KIRIPILGDRNF-KITYVNDEPYLDYYGNLFPINDEGRNYLNDIE 165
Query: 67 KLQEAMEAVLRFWLDKGIDGWR---IDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDK 123
KL + L W D + + E ++ + ++ + H
Sbjct: 166 KLLKVQYYELVDWRDYPSYRRFFAVNELIAVRQELEWVFEDSHSKILSFEVDGYRIDHID 225
Query: 124 TTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNF 183
PE Y + K K G+ I + + + E +++ +G Y F
Sbjct: 226 GLFKPEEY---------LRRLKNKIGNKHIFVEKILSIGE-KLRWDFIDGTTG--YDFLN 273
Query: 184 QLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYD--NHDNPRVTNRLGKE 241
L E + I + + + D L E + HD R++ LG
Sbjct: 274 YSNLLFTDNEDKMTEIYKNILDIDL-----DELVKETKKKIIDTLFKHDIERISMMLG-V 327
Query: 242 LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETR 292
+ + V TY + + ++RN ++ + +
Sbjct: 328 NYEEIKEFLSCLK-VYRTYITENDFRDEEIIRNCSQKVYESMKKNVTAFMK 377
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 83.1 bits (205), Expect = 6e-17
Identities = 49/287 (17%), Positives = 84/287 (29%), Gaps = 75/287 (26%)
Query: 9 PYDEYYVWK--EGKGVNKTEPPNNWV-SVFSGSAWTYDENRKMFYLHQFSAKQ------- 58
P W G N W F G+ W D+ K + F K
Sbjct: 253 PGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDW--DDYSKESGKYLFDEKSWDWTYNW 310
Query: 59 -------PDLNFRSKKLQEAMEAVLRFWLDK-GIDGWRIDALKHMFEAGDFKDEKYKPGK 110
D+++ ++ +Q + ++ ++ DG+R+DA+KH+ F
Sbjct: 311 DEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHI--DYRF--------- 359
Query: 111 EGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYT-DIENTMKYF 169
+ + + + E++ D+++ +
Sbjct: 360 --------------------------IDKWMSAVQNSSNRDVFFVGEAWVEDVDDLKGFL 393
Query: 170 KYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVY-DN 228
G P F+F L V +LN +N N P + DN
Sbjct: 394 DTVGNP-DLRVFDFPLR-------SFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDN 445
Query: 229 HDNPRVTNRLG------KELADAYLMISLLMPGVGVTYYGDEIGMEG 269
HD R K A AY++ GV Y+ D E
Sbjct: 446 HDTDRDEGSYTVSIYSRKYQAYAYIL--TRAEGVPTVYWKDYYIWEM 490
Score = 44.2 bits (104), Expect = 1e-04
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 394 DNHDNPRVTNRLG------KELADAYLMISLLMPGVGVTYYGDEIGMEG 436
DNHD R K A AY++ GV Y+ D E
Sbjct: 444 DNHDTDRDEGSYTVSIYSRKYQAYAYIL--TRAEGVPTVYWKDYYIWEM 490
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 82.2 bits (203), Expect = 1e-16
Identities = 47/337 (13%), Positives = 81/337 (24%), Gaps = 124/337 (36%)
Query: 27 PPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDKGIDG 86
N + Y + DLN + + ++ ++ WLD GIDG
Sbjct: 176 HHNGGTDFSTTENGIYKNLYDL----------ADLNHNNSTVDVYLKDAIKMWLDLGIDG 225
Query: 87 WRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQ 146
R++A+KHM + ++ +
Sbjct: 226 IRMNAVKHM--PFGW-----------------------------------QKSFMAAVNN 248
Query: 147 KTGHTRILIVESYTDIENTMKYFKYNGRPAAH----YPFNFQLV---LDPDKGERALVLI 199
+ + + + + F ++ D L +
Sbjct: 249 YKPV--FTFGQWFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAM 306
Query: 200 LNHYMKVKSKNQFKDNLPAEGTSNWVY-DNHDNPRVTNRLGKE----LADAYLMISLLMP 254
L + + DNHD R A A+ +
Sbjct: 307 LEGS-----AADYAQV-----DDQVTFIDNHDMERFHASNANRRKLEQALAFTL---TSR 353
Query: 255 GVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARK 314
GV YYG E M G DP+N R + ST
Sbjct: 354 GVPAIYYGTEQYMSG-------GTDPDN-------------RARIPSFSTSTT------- 386
Query: 315 TWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
Y++ +KL+ LR+
Sbjct: 387 -----------------------AYQVIQKLAPLRKC 400
Score = 63.7 bits (155), Expect = 8e-11
Identities = 37/169 (21%), Positives = 54/169 (31%), Gaps = 60/169 (35%)
Query: 394 DNHDNPRVTNRLGKE----LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNN 449
DNHD R A A+ + GV YYG E M G DP+N
Sbjct: 325 DNHDMERFHASNANRRKLEQALAFTL---TSRGVPAIYYGTEQYMSG-------GTDPDN 374
Query: 450 AGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLY 509
R + ST Y++
Sbjct: 375 -------------RARIPSFSTSTT------------------------------AYQVI 391
Query: 510 RKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNS 557
+KL+ LR+ + I YG+ +N + VL R G++ +V +N N
Sbjct: 392 QKLAPLRKCNPAIAYGSTQERWINND-VLIYERKF-GSNVAVVAVNRNL 438
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 81.8 bits (201), Expect = 2e-16
Identities = 50/408 (12%), Positives = 97/408 (23%), Gaps = 67/408 (16%)
Query: 7 IAPYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAW-----TYDENRKMFYLHQFSAKQPDL 61
I + +++ W + + + PP F Y++ +L +F
Sbjct: 214 IREHPDWFYWIKVEELADYTPPRAEELPFKVPDEDELEIIYNKENVKRHLKKF---TLPP 270
Query: 62 NFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMF-----------------EAGDFKDE 104
N + E ++ L+ + + I D +
Sbjct: 271 NLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTWDDVTFLRLYLDHPEA 330
Query: 105 KYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVD---EYKQKTGHTRILIVESYTD 161
+ Y K + P W L Y++K G + +
Sbjct: 331 SKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHAL 390
Query: 162 IENTMKYFKYNGRPAAHYPFNFQL-VLDPDKGERALVLILN--------HYMKVKSKNQF 212
+ + N + F LD +K + + + +V+ +
Sbjct: 391 PKELLDLIIKNVK-EYDPAFVMIAEELDMEKDKASKEAGYDVILGSSWYFAGRVEEIGKL 449
Query: 213 KDNLPAEGTSNWVY-DNHDNPRVTNRLGKELADAYLMI--SLLMPGVGVTYYGDEIGMEG 269
D + D PR+ R L + G EIG +
Sbjct: 450 PDIAEELVLPFLASVETPDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQ 509
Query: 270 PLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVE 329
P+ + +P K A F W
Sbjct: 510 PMNLGLDTDPN-----------LRKVLSPTDEFFGKLAFFDHYVLHW------------- 545
Query: 330 AQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHILNGEWVLGLSRAAN 377
D +KL ++R L + ++ S N
Sbjct: 546 --DSPDRGVLNFIKKLIKVRHEFLDFVLNGKFENLTTKDLVMYSYEKN 591
Score = 61.8 bits (149), Expect = 3e-10
Identities = 22/170 (12%), Positives = 38/170 (22%), Gaps = 29/170 (17%)
Query: 390 FEAYDNHDNPRVTNRLGKELADAYLMI--SLLMPGVGVTYYGDEIGMEGPLVRNDERRDP 447
+ + D PR+ R L + G EIG + P+ +
Sbjct: 461 LASVETPDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMNLGLDTDPN 520
Query: 448 NNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYK 507
+P K A F W D
Sbjct: 521 -----------LRKVLSPTDEFFGKLAFFDHYVLHW---------------DSPDRGVLN 554
Query: 508 LYRKLSQLRRTDTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNS 557
+KL ++R L + ++ S ++ N
Sbjct: 555 FIKKLIKVRHEFLDFVLNGKFENLTTKDLVMYSYEK-NGQKIVIAANVGK 603
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 80.3 bits (198), Expect = 5e-16
Identities = 58/371 (15%), Positives = 99/371 (26%), Gaps = 128/371 (34%)
Query: 6 GIAPYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQ------- 58
++ + G N N+ + + + + ++ A+
Sbjct: 134 TPFKANDSTFAEGGALYNNGTYMGNYFD-DATKGYFHHNGDISNWDDRYEAQWKNFTDPA 192
Query: 59 ----PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSM 114
DL+ + + + + + G DG RIDA+KH F
Sbjct: 193 GFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHF--NSGF------------- 237
Query: 115 NYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIV-ESYTDIENTMKYFKY-- 171
++L D+ QK I +V E Y D T + +
Sbjct: 238 ----------------------SKSLADKLYQKKD---IFLVGEWYGDDPGTANHLEKVR 272
Query: 172 ---NGRPAA-HYPFNFQLV---LDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNW 224
N + N + + L ++N ++ ++K+NL
Sbjct: 273 YANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQT---GNEYKYKENLIT------ 323
Query: 225 VYDNHDNPRVTNRLGKE----LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDP 280
DNHD R + + A A+++ G YYG E M G DP
Sbjct: 324 FIDNHDMSRFLSVNSNKANLHQALAFIL---TSRGTPSIYYGTEQYMAG-------GNDP 373
Query: 281 NNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYK 340
N R M T +K
Sbjct: 374 YN-------------RGMMPAFDTTTT------------------------------AFK 390
Query: 341 LYRKLSQLRRT 351
L+ LRR
Sbjct: 391 EVSTLAGLRRN 401
Score = 63.3 bits (154), Expect = 1e-10
Identities = 37/169 (21%), Positives = 50/169 (29%), Gaps = 60/169 (35%)
Query: 394 DNHDNPRVTNRLGKE----LADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNN 449
DNHD R + + A A+++ G YYG E M G DP N
Sbjct: 326 DNHDMSRFLSVNSNKANLHQALAFIL---TSRGTPSIYYGTEQYMAG-------GNDPYN 375
Query: 450 AGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLY 509
R M T +K
Sbjct: 376 -------------RGMMPAFDTTTT------------------------------AFKEV 392
Query: 510 RKLSQLRRTDTMI-YGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNS 557
L+ LRR + I YG + +N + V R ND +V IN N+
Sbjct: 393 STLAGLRRNNAAIQYGTTTQRWINND-VYIYERKF-FNDVVLVAINRNT 439
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 79.6 bits (196), Expect = 9e-16
Identities = 44/372 (11%), Positives = 91/372 (24%), Gaps = 117/372 (31%)
Query: 10 YDEYYVWKE-GKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
+ E++ + G + PP + + Y F A L
Sbjct: 355 HPEWFHHRPDGTIAHAENPPKKY---------------QDIYPIAFDADPDGL------- 392
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLP 128
+LR W+D G+ +R+D H K
Sbjct: 393 ATETVRILRHWMDHGVRIFRVDN----------------------------PHTKPVAFW 424
Query: 129 ELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLD 188
E + A ++ I + E++T + + +
Sbjct: 425 E------RVIADINGTDPD----VIFLAEAFTRPAMMATLAQI----GFQQSYTYFTW-- 468
Query: 189 PDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLG-KELADAYL 247
R L Y+ + + N+ + D + G + +
Sbjct: 469 -----RNTKQELTEYL-----TELSGEAASYMRPNFFANTPDILHAYLQHGGRPAFEVRA 518
Query: 248 MISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERTPMQWDSTKHA 307
+++ + Y G E+ PL G ++ + P W
Sbjct: 519 VLAATLSPTWGIYSGYELCENTPL----------REGSEEYLDSEKYQLKPRDWT----- 563
Query: 308 GFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRTDTMIYGAVSTHIL--N 365
+ + L +L+ +RR + + H +
Sbjct: 564 ----------------------RAAREGTTIAPLVTRLNTIRRENPALRQLRDLHFHPTD 601
Query: 366 GEWVLGLSRAAN 377
E V+ S+
Sbjct: 602 KEEVIAYSKRQG 613
Score = 53.4 bits (128), Expect = 1e-07
Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 41/168 (24%)
Query: 393 YDNHDNPRVTNRLG-KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
+ D + G + + +++ + Y G E+ PL G
Sbjct: 496 ANTPDILHAYLQHGGRPAFEVRAVLAATLSPTWGIYSGYELCENTPL----------REG 545
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
++ + P W + + L +
Sbjct: 546 SEEYLDSEKYQLKPRDWT---------------------------RAAREGTTIAPLVTR 578
Query: 512 LSQLRRTDTMIYGAVSTHIL--NGEWVLGLSRSMPGNDTYIVLINFNS 557
L+ +RR + + H + E V+ S+ G++T +V++N +
Sbjct: 579 LNTIRRENPALRQLRDLHFHPTDKEEVIAYSKRQ-GSNTVLVVVNLDP 625
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 76.9 bits (189), Expect = 5e-15
Identities = 45/271 (16%), Positives = 79/271 (29%), Gaps = 60/271 (22%)
Query: 11 DEYYVWKEGKGVNKTEPP--NNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
+ W GV+ + NN + F G +D + D++ ++
Sbjct: 154 SFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEV 213
Query: 69 QEAMEAVLRFWLDK-GIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDL 127
+ ++ + G+DG+RIDA+KH+ F
Sbjct: 214 VNELRNWGVWYTNTLGLDGFRIDAVKHI--KYSF-------------------------- 245
Query: 128 PELYEILVKWRALVDEYKQKTGHTRILIVESYT-DIENTMKYFKYNGRPAAHYPFNFQLV 186
R ++ + TG + E + D+ Y + + F+ L
Sbjct: 246 ---------TRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNHS--VFDVPL- 293
Query: 187 LDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWV--YDNHDNPRVTNRLG----- 239
L +N F + S+ V DNHD+
Sbjct: 294 ------HYNLYNASKSGGNYDMRNIFNGTVVQRHPSHAVTFVDNHDSQPEEALESFVEEW 347
Query: 240 -KELADAYLMISLLMPGVGVTYYGDEIGMEG 269
K LA A + G +YGD G+
Sbjct: 348 FKPLAYALTL--TREQGYPSVFYGDYYGIPT 376
Score = 39.1 bits (91), Expect = 0.004
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 394 DNHDNPRVTNRLG------KELADAYLMISLLMPGVGVTYYGDEIGMEG 436
DNHD+ K LA A + G +YGD G+
Sbjct: 330 DNHDSQPEEALESFVEEWFKPLAYALTL--TREQGYPSVFYGDYYGIPT 376
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 76.1 bits (187), Expect = 7e-15
Identities = 45/307 (14%), Positives = 88/307 (28%), Gaps = 76/307 (24%)
Query: 11 DEYYVWKEGKGVN-KTEPPNNWVSVFSG--SAWTYDENRKMFYLHQFSAKQPDLNFRSKK 67
D + W GV+ N + F+ W DE + +++F +
Sbjct: 152 DFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLG----SNIDFSHPE 207
Query: 68 LQEAMEAVLRFWLD-KGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTD 126
+Q+ ++ ++ D +DG+R+DA+KH+ +
Sbjct: 208 VQDELKDWGSWFTDELDLDGYRLDAIKHI--PFWY------------------------- 240
Query: 127 LPELYEILVKWRALVDEYKQKTGHTRILIVESYT-DIENTMKYFKYNGRPAA--HYPFNF 183
V + + ++ E + D+ Y + P N+
Sbjct: 241 ----------TSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNY 290
Query: 184 QLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWV--YDNHDNPRVTNRLG-- 239
+G + + V++ + V DNHD +
Sbjct: 291 NFYRASQQGGSYDMRNILRGSLVEAHPM-----------HAVTFVDNHDTQPGESLESWV 339
Query: 240 ----KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRND-------ERRDPNNAGGARA 288
K LA A ++ G +YGD G+ + N A G +
Sbjct: 340 ADWFKPLAYATIL--TREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQNYAYGTQH 397
Query: 289 DETRDPE 295
D +
Sbjct: 398 DYFDHWD 404
Score = 41.4 bits (97), Expect = 7e-04
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 394 DNHDNPRVTNRLG------KELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRND----- 442
DNHD + K LA A ++ G +YGD G+ +
Sbjct: 325 DNHDTQPGESLESWVADWFKPLAYATIL--TREGGYPNVFYGDYYGIPNDNISAKKDMID 382
Query: 443 --ERRDPNNAGGARADETRDPE 462
N A G + D +
Sbjct: 383 ELLDARQNYAYGTQHDYFDHWD 404
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 64.7 bits (158), Expect = 3e-11
Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 55/179 (30%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
+NHDNPR + ++A A + + ++ G+ + Y G E G DP N
Sbjct: 294 ENHDNPRFAS-YTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGG-------NDPAN-- 343
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
R G+ T D YKL
Sbjct: 344 -----------REATWLS-----GYPT-----------------------DSELYKLIAS 364
Query: 512 LSQLRRTDTMI----YGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566
+ +R + I + + + + G+ +L N + + LS+
Sbjct: 365 ANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSL 423
Score = 53.9 bits (130), Expect = 7e-08
Identities = 24/127 (18%), Positives = 37/127 (29%), Gaps = 51/127 (40%)
Query: 227 DNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 284
+NHDNPR + ++A A + + ++ G+ + Y G E G DP N
Sbjct: 294 ENHDNPRFAS-YTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGG-------NDPAN-- 343
Query: 285 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 344
R G+ T D YKL
Sbjct: 344 -----------REATWLS-----GYPT-----------------------DSELYKLIAS 364
Query: 345 LSQLRRT 351
+ +R
Sbjct: 365 ANAIRNY 371
Score = 48.1 bits (115), Expect = 5e-06
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 28 PNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDK-GIDG 86
P ++ + D +L + PDL+ ++ + + IDG
Sbjct: 148 PFCFIQNYEDQTQVED-----CWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDG 202
Query: 87 WRIDALKHM 95
RID +KH+
Sbjct: 203 LRIDTVKHV 211
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 64.4 bits (157), Expect = 3e-11
Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 55/179 (30%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAG 451
+NHDNPR + + A ++S + G+ + Y G+E G + P N
Sbjct: 294 ENHDNPRFAK-YTSDYSQAKNVLSYIFLSDGIPIVYAGEEQHYAG-------GKVPYN-- 343
Query: 452 GARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRK 511
R G+ T Y
Sbjct: 344 -----------REATWLS-----GYDT-----------------------SAELYTWIAT 364
Query: 512 LSQLRRT----DTMIYGAVSTHILNGEWVLGLSRSMPGNDTYIVLINFNSIIEEVDLSV 566
+ +R+ D+ + + +++ G+ VL N S L++
Sbjct: 365 TNAIRKLAIAADSAYITYANDAFYTDSNTIAMAKGTSGSQVITVLSNKGSSGSSYTLTL 423
Score = 53.2 bits (128), Expect = 1e-07
Identities = 27/178 (15%), Positives = 45/178 (25%), Gaps = 63/178 (35%)
Query: 179 YPFNFQLV---LDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVT 235
YP +QL+ L ++ S N +NHDNPR
Sbjct: 252 YPIYWQLLYAFESSSGSISNLYNMIKSVASDCSDPTLLGNF---------IENHDNPRFA 302
Query: 236 NRLGKELADAYLMISLLM--PGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRD 293
+ + A ++S + G+ + Y G+E G + P N
Sbjct: 303 K-YTSDYSQAKNVLSYIFLSDGIPIVYAGEEQHYAG-------GKVPYN----------- 343
Query: 294 PERTPMQWDSTKHAGFSTARKTWLPVNPNYYYLNVEAQKKADWSTYKLYRKLSQLRRT 351
R G+ T Y + +R+
Sbjct: 344 --REATWLS-----GYDT-----------------------SAELYTWIATTNAIRKL 371
Score = 49.4 bits (118), Expect = 2e-06
Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 10 YDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQ 69
Y + + + + + + W + + PDL+ ++
Sbjct: 125 YAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVR 184
Query: 70 EAMEAVLRFWLDK-GIDGWRIDALKHM 95
+ + +DG RID++ +
Sbjct: 185 TIWYDWVADLVSNYSVDGLRIDSVLEV 211
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 61.7 bits (150), Expect = 2e-10
Identities = 28/222 (12%), Positives = 60/222 (27%), Gaps = 52/222 (23%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
D N ++ ++Q ++ L L+ G DG+R DA KH+
Sbjct: 142 YDWNTQNTQVQSYLKRFLERALNDGADGFRFDAAKHI----------------------- 178
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
+LP+ ++ + + E D + +
Sbjct: 179 -------ELPDDGSYGSQFWPNITNTSAE-----FQYGEILQDSASRDAAYANYMD-VTA 225
Query: 179 YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPR----- 233
+ + + I ++ V + WV ++HD
Sbjct: 226 SNYGHSIRSALKNRNLGVSNISHYASDVSADKLV----------TWV-ESHDTYANDDEE 274
Query: 234 VTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRND 275
T ++ + +I+ + + E G G
Sbjct: 275 STWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGGNGVRFPGK 316
Score = 31.7 bits (72), Expect = 0.63
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 394 DNHDNPR-----VTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRND 442
++HD T ++ + +I+ + + E G G
Sbjct: 263 ESHDTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGGNGVRFPGK 316
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 54.4 bits (131), Expect = 5e-08
Identities = 30/263 (11%), Positives = 62/263 (23%), Gaps = 42/263 (15%)
Query: 14 YVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAME 73
++ +G + + Y + A PD++ + ++Q ++
Sbjct: 103 GIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELK 162
Query: 74 AVLRFWLDK-GIDGWRIDALKHMFE--AGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPEL 130
L + G D WR+D + A + D
Sbjct: 163 EWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGT----------------------SPS 200
Query: 131 YEILVKWRALVDEYKQKTGHTRILIVESYTD-IENTMKYFKYNGRPAAHYPFNFQLVLDP 189
+ W + K + + ++ + ++ + + L
Sbjct: 201 LAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAA--SAGMVFDFTTKGILNAAV 258
Query: 190 DKGERALVLILNHYMKVKSKNQFKD-NLPAEGTSNWVYDNHDNPRVTNRLGKELAD---A 245
+ L+ V K DNHD
Sbjct: 259 EGELWRLIDPQGKAPGVMGWWPAKAVTFV---------DNHDTGSTQAMWPFPSDKVMQG 309
Query: 246 YLMISLLMPGVGVTYYGDEIGME 268
Y I L PG+ +Y
Sbjct: 310 YAYI-LTHPGIPCIFYDHFFNWG 331
Score = 37.4 bits (87), Expect = 0.009
Identities = 10/45 (22%), Positives = 12/45 (26%), Gaps = 4/45 (8%)
Query: 394 DNHDNPRVTNRLGKELAD---AYLMISLLMPGVGVTYYGDEIGME 435
DNHD Y I L PG+ +Y
Sbjct: 288 DNHDTGSTQAMWPFPSDKVMQGYAYI-LTHPGIPCIFYDHFFNWG 331
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 52.6 bits (126), Expect = 2e-07
Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 35/130 (26%)
Query: 10 YDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQP---------- 59
Y + + E + + +V S ++ ++L F K P
Sbjct: 113 YTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYD 172
Query: 60 --------DLNFRSKKLQEAMEAVLRF-----------------WLDKGIDGWRIDALKH 94
+++++ V LD +DG+RID +
Sbjct: 173 TLQKQNYTLMSWKNPPSYRRFFDVNTLIGVNVEXDHVFQESHSXILDLDVDGYRIDHIDG 232
Query: 95 MFEAGDFKDE 104
+++ + ++
Sbjct: 233 LYDPEKYIND 242
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta
sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1
c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A*
1qi4_A* 2amg_A 1qpk_A*
Length = 527
Score = 47.4 bits (112), Expect = 1e-05
Identities = 12/91 (13%), Positives = 21/91 (23%), Gaps = 9/91 (9%)
Query: 27 PPNNWVSVFSGSAWTYDENRKMFYLHQ------FSAKQPDLNFRSKKLQEAMEAVLRFWL 80
P W D Y + F DLN ++
Sbjct: 123 PDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLR 182
Query: 81 DK-GIDGWRIDALKHMFEA--GDFKDEKYKP 108
+ G G+R D ++ + +
Sbjct: 183 SQYGAGGFRFDFVRGYAPERVNSWMTDSADN 213
Score = 32.0 bits (72), Expect = 0.54
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 14/49 (28%)
Query: 227 DNHDNPRVTNRLG-----------KELADAYLMISLLMPGVGVTYYGDE 264
DNHD + G A AY+ L PG V Y+
Sbjct: 291 DNHDTGYSPGQNGGQHHWALQDGLIRQAYAYI---LTSPGTPVVYWDHM 336
Score = 32.0 bits (72), Expect = 0.54
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 14/49 (28%)
Query: 394 DNHDNPRVTNRLG-----------KELADAYLMISLLMPGVGVTYYGDE 431
DNHD + G A AY+ L PG V Y+
Sbjct: 291 DNHDTGYSPGQNGGQHHWALQDGLIRQAYAYI---LTSPGTPVVYWDHM 336
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism,
4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio
molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A
1viw_A*
Length = 471
Score = 45.9 bits (108), Expect = 3e-05
Identities = 41/250 (16%), Positives = 72/250 (28%), Gaps = 41/250 (16%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDD 118
DLN S ++ + + +D G+ G+R+DA KHM
Sbjct: 154 RDLNQGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHM----------------------- 190
Query: 119 LIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKYFKYNGRPAAH 178
+L I + L +Y G + E + +Y G
Sbjct: 191 -------SPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTGFGCVL 243
Query: 179 -YPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNR 237
+ F L + +G L + N L +V DNHDN R
Sbjct: 244 EFQFGVSLG-NAFQGGNQLKNLANWG-------PEWGLLEGLDAVVFV-DNHDNQRTGGS 294
Query: 238 LGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERT 297
+ + + + YG M ++++ P + G + + T
Sbjct: 295 QILTYKNPKPYK-MAIAFMLAHPYGTTRIMSSFDFTDNDQGPPQDGSGNLISPGINDDNT 353
Query: 298 PMQWDSTKHA 307
+H
Sbjct: 354 CSNGYVCEHR 363
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase;
HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1
c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A
1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A*
1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A*
3ij8_A* ...
Length = 496
Score = 42.5 bits (99), Expect = 3e-04
Identities = 44/278 (15%), Positives = 77/278 (27%), Gaps = 46/278 (16%)
Query: 29 NNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWR 88
N+ + + Q DL ++ + L +D G+ G+R
Sbjct: 137 NDGKCKTASGGIESYNDPYQVRDCQLVG-LLDLALEKDYVRSMIADYLNKLIDIGVAGFR 195
Query: 89 IDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKT 148
IDA KHM + DK +L R + +
Sbjct: 196 IDASKHM-----------------WPGDIKAVLDKLHNLNT-NWFPAGSRPFIFQEVIDL 237
Query: 149 GHTRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVLDPDKGE--------RALVLIL 200
G I E + + T + ++ + GE RALV +
Sbjct: 238 GGEAIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVD 297
Query: 201 NHYMKVKSKNQFKDNLPAEGTSNWVYDNHDNPRVTNRLGKELADAYLMISLL-MPGVGVT 259
NH DN G + R ++A +++ V +
Sbjct: 298 NH-----------DNQRGHGAGGSSILTFWDAR-----LYKIAVGFMLAHPYGFTRVMSS 341
Query: 260 YYGDEIGMEGPLVRNDERRDPNNAGGARADETRDPERT 297
Y + G ++ P N G + T + + T
Sbjct: 342 YRWARNFVNGE--DVNDWIGPPNNNGVIKEVTINADTT 377
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 41.6 bits (97), Expect = 5e-04
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALKHMF 96
DL+ S +Q + A + G+ G+R DA KH+
Sbjct: 143 ADLDTASNYVQNTIAAYINDLQAIGVKGFRFDASKHVA 180
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 40.2 bits (94), Expect = 0.001
Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 14/108 (12%)
Query: 1 MNTTAGIAPYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPD 60
P+ Y W + V + N++ F + + PD
Sbjct: 113 AGGDLEWNPFVGDYTWTDFSKVASGKYTANYLD-FHPNELHCCDEGTFGGF-------PD 164
Query: 61 LNFRSKKLQEAMEAVLRFWLD----KGIDGWRIDALKHMFEAGDFKDE 104
+ + Q + + G DGWR D +K +
Sbjct: 165 ICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGY--GAWVVRD 210
Score = 39.8 bits (93), Expect = 0.002
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 13/63 (20%)
Query: 227 DNHDNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGA 286
NHD + N K A A++ L G V +Y D + N
Sbjct: 286 ANHDTDIIWN---KYPAYAFI---LTYEGQPVIFYRDFEEWLN-------KDKLINLIWI 332
Query: 287 RAD 289
Sbjct: 333 HDH 335
Score = 39.8 bits (93), Expect = 0.002
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 13/63 (20%)
Query: 394 DNHDNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGPLVRNDERRDPNNAGGA 453
NHD + N K A A++ L G V +Y D + N
Sbjct: 286 ANHDTDIIWN---KYPAYAFI---LTYEGQPVIFYRDFEEWLN-------KDKLINLIWI 332
Query: 454 RAD 456
Sbjct: 333 HDH 335
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.029
Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 66/173 (38%)
Query: 22 VNKTEPPNNWVS----------VFSGSAWT----------------YDEN------RKMF 49
N P V V SG + D++ RK+
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 50 YLHQF---SAKQPDLNFRSKKLQEAMEAVLRFWLDKGIDGWRIDALK-HMFEAGDFKDEK 105
+ ++F ++ P F S L A + + + + + + ++ ++ D D
Sbjct: 416 FSNRFLPVAS--P---FHSHLLVPASDLINKDLVKNNVS-FNAKDIQIPVY---DTFD-- 464
Query: 106 YKPGKEGSMNYDDLIHDKTTDLPELYEIL----VKWRALVDEYKQKTGHTRIL 154
GS DL + + + + VKW + T IL
Sbjct: 465 ------GS----DLRVLSGSISERIVDCIIRLPVKWETTT-----QFKATHIL 502
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 34.8 bits (79), Expect = 0.086
Identities = 37/240 (15%), Positives = 63/240 (26%), Gaps = 35/240 (14%)
Query: 59 PDLNFRSKKLQEAMEAVLRFWLDKG----------IDGWRIDALKHMFEAGDFKDEKYKP 108
D++ + +Q L F ++ G D R+DA+ ++ D
Sbjct: 193 NDVDNSNPVVQAEQLNWLHFLMNFGNIYANDPDANFDSIRVDAVDNV-------DADLLQ 245
Query: 109 GKEGSMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQKTGHTRILIVESYTDIENTMKY 168
+ IH + IL W Y G I +
Sbjct: 246 IAGDYLKAAKGIHKNDKAANDHLSILEAWSYNDTPYLHDDGDNMINMDNRLRLSLLYSLA 305
Query: 169 FKYNGRPAAHYPFNFQLV-LDPDKGE----RALVLILNH------YMKVKSKNQFKDNLP 217
N R + LV D E + I H ++ K + N+
Sbjct: 306 KPLNQRSGMNPLITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINPNVV 365
Query: 218 AEGTSN-------WVYDNHDNPRVTNRLGKELADAYLMISLLMPGVGVTYYGDEIGMEGP 270
+ +Y+ A +Y ++ V YYGD +G
Sbjct: 366 GYSFTMEEIKKAFEIYNKDLLATEKKYTHYNTALSYALLLTNKSSVPRVYYGDMFTDDGQ 425
Score = 32.8 bits (74), Expect = 0.38
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 9 PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTYDENRKMFYLHQFSAKQPDLNFRSKKL 68
P + V+ + + + G+ + E + Y F+ KQ
Sbjct: 738 PVAGSQIKNTLYVVDGKSSGKDQQAKYGGA---FLEELQAKYPELFARKQISTGVPMDPS 794
Query: 69 QEAMEAVLRFWLDKGIDGWRIDALKHMFEAGDFKDEKY 106
+ ++ W K +G I + D Y
Sbjct: 795 VK-----IKQWSAKYFNGTNILGRGAGYVLKDQATNTY 827
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.9 bits (69), Expect = 0.80
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 15/64 (23%)
Query: 7 IA---PYDEYYVWKEGKGVNKTEPPNNWVSVFSGSAWTY-DENRKMFYLHQF-----SAK 57
IA P +E N NN T+ D K++Y+ QF +
Sbjct: 174 IAIELPPNE-----ILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYV-QFFFKQAEQE 227
Query: 58 QPDL 61
Q D+
Sbjct: 228 QADV 231
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 1.4
Identities = 65/455 (14%), Positives = 125/455 (27%), Gaps = 148/455 (32%)
Query: 24 KTEPPNN--WVSVFSGSAWTYDENRKMF--YLHQFSAKQPDLNFRSK----KLQEAMEAV 75
+ + W+++ + + + +M L+Q + S ++ +
Sbjct: 177 QCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 76 LRFWLDKG------I-----DGWRIDAL------------KHMFEAGDFKDEKYKPGKEG 112
R K + + +A K + + +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH- 293
Query: 113 SMNYDDLIHDKTTDLPELYEILVKWRALVDEYKQK------TGHTRI--LIVESYTDIEN 164
H T E+ +L+K+ +D Q T + R +I ES D
Sbjct: 294 --------HSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 165 TMKYFKYNGRPAAHYPFNFQLVLDPDKGERALVLILNHYMKVKSKNQFKD--------NL 216
T +K+ ++ DK + LN + + F ++
Sbjct: 343 TWDNWKH---------------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 217 PAEGTSN-WVYDNHDNPR-VTNRLGKELADAYLMISLLMP-GVGVTYYGDEIGMEGPLVR 273
P S W + V N+L K SL+ T I +E V+
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKY--------SLVEKQPKESTISIPSIYLE-LKVK 438
Query: 274 NDERRDPNNAGGARADETRDPERTPMQWDSTKHAGFSTARKTWLPVNPNYYY-------L 326
+ + + + +T D P Y+Y
Sbjct: 439 LENEYALHR----SIVDHYNIPKTFDSDDLIP------------PYLDQYFYSHIGHHLK 482
Query: 327 NVEAQKKADWSTYKLYRKL--------SQLRRTDTMIYGAVSTHILNGEWVLGLSRAANM 378
N+E ++ L+R + ++R T + S ILN
Sbjct: 483 NIEHPERMT-----LFRMVFLDFRFLEQKIRHDSTAWNASGS--ILN------------- 522
Query: 379 LLTEMKRERAKFEAY--DNHDNPRVTNRLGKELAD 411
L ++K ++ Y DN RL + D
Sbjct: 523 TLQQLK----FYKPYICDNDPKY---ERLVNAILD 550
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A
{Giardia intestinalis} PDB: 2iic_A
Length = 310
Score = 29.4 bits (66), Expect = 2.9
Identities = 5/41 (12%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 116 YDDLIHDKTTDLPELYEILVK-----WRALVDEYKQKTGHT 151
+LI D + +++ ++ + ++ TG +
Sbjct: 164 KHNLIDADEPDHEAVVRLIITSTADEYKEINHRFEVLTGKS 204
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 29.3 bits (65), Expect = 4.9
Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 38/162 (23%)
Query: 81 DKGIDGWRIDALKHMFEAGDFKDEKYKPGKEGSMNYDDLIHDKTTDLPELYEILVKWRAL 140
D D RIDA+ + ++D I L + Y+
Sbjct: 444 DANFDSIRIDAVDFI--------------------HNDTIQRTYDYLRDAYQ-------- 475
Query: 141 VDEYKQKTGHTRILIVESYTDIENTMKYFK----YNGRPAAHYPFNFQLVLDPDKGERAL 196
V + + + I +VE+ D + + N R AA + +
Sbjct: 476 VQQS-EAKANQHISLVEAGLDAGTSTIHNDALIESNLREAATLSLTNEPGKNKPLTNMLQ 534
Query: 197 VLILNHYMKVKSKNQFKDNLPAEGTSNWVY-DNHDNPRVTNR 237
+ + + +++ + T N+ HD
Sbjct: 535 DVDGGTLI----TDHTQNSTENQATPNYSIIHAHDKGVQEKV 572
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 28.1 bits (63), Expect = 8.6
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 76 LRFWLDK-GIDGWRIDALKHM 95
LR+W+D+ DG+R D + M
Sbjct: 329 LRYWMDEFMFDGFRFDGVTSM 349
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
sandwich, transferase; 2.30A {Escherichia coli} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Length = 617
Score = 28.3 bits (64), Expect = 9.3
Identities = 8/19 (42%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 78 FWLDK-GIDGWRIDALKHM 95
+W+++ GID R+DA+ M
Sbjct: 281 YWIERFGIDALRVDAVASM 299
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 28.0 bits (63), Expect = 10.0
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 78 FWLDK-GIDGWRIDALKHM 95
+WL + IDG R+DA+ M
Sbjct: 389 YWLQEFHIDGLRVDAVASM 407
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.412
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,222,513
Number of extensions: 570878
Number of successful extensions: 1441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1224
Number of HSP's successfully gapped: 155
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.0 bits)