Query psy1565
Match_columns 146
No_of_seqs 104 out of 1118
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 18:05:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 1.9E-28 4E-33 169.5 13.4 132 5-139 7-138 (138)
2 PF00782 DSPc: Dual specificit 100.0 1.1E-28 2.4E-33 169.5 11.3 127 12-139 7-133 (133)
3 KOG1718|consensus 100.0 2.1E-28 4.6E-33 171.0 12.1 123 20-145 38-160 (198)
4 cd00127 DSPc Dual specificity 99.9 4.3E-27 9.4E-32 162.3 13.3 131 6-137 9-139 (139)
5 KOG1716|consensus 99.9 4.1E-26 9E-31 175.4 13.9 133 13-145 89-221 (285)
6 PTZ00393 protein tyrosine phos 99.9 5E-25 1.1E-29 163.3 12.5 129 13-144 105-233 (241)
7 PTZ00242 protein tyrosine phos 99.9 6.8E-25 1.5E-29 156.5 12.2 128 14-143 30-161 (166)
8 KOG1717|consensus 99.9 1.8E-24 3.9E-29 161.0 8.4 103 42-144 214-316 (343)
9 KOG1719|consensus 99.9 2.6E-23 5.6E-28 143.7 9.6 128 17-144 44-174 (183)
10 PRK12361 hypothetical protein; 99.9 7.2E-23 1.6E-27 169.6 14.0 130 11-141 107-238 (547)
11 KOG1720|consensus 99.9 1E-20 2.3E-25 136.7 12.6 120 17-138 87-206 (225)
12 COG2453 CDC14 Predicted protei 99.8 3.4E-19 7.3E-24 128.8 10.7 98 38-136 65-163 (180)
13 PF05706 CDKN3: Cyclin-depende 99.7 1.1E-18 2.3E-23 123.1 0.6 102 11-113 66-168 (168)
14 KOG2836|consensus 99.6 1.6E-14 3.4E-19 98.2 10.4 125 12-139 29-155 (173)
15 smart00012 PTPc_DSPc Protein t 99.5 1.1E-13 2.3E-18 90.3 10.4 88 48-135 5-101 (105)
16 smart00404 PTPc_motif Protein 99.5 1.1E-13 2.3E-18 90.3 10.4 88 48-135 5-101 (105)
17 cd00047 PTPc Protein tyrosine 99.4 2.3E-12 5.1E-17 96.0 11.4 71 65-135 150-227 (231)
18 smart00194 PTPc Protein tyrosi 99.4 3.8E-12 8.2E-17 96.4 11.5 89 47-135 157-254 (258)
19 PRK15375 pathogenicity island 99.4 6.1E-12 1.3E-16 102.0 10.7 88 54-141 432-530 (535)
20 PHA02742 protein tyrosine phos 99.3 8.3E-11 1.8E-15 91.4 12.8 55 79-133 229-288 (303)
21 PHA02740 protein tyrosine phos 99.3 5.8E-11 1.3E-15 92.0 11.9 88 47-134 177-281 (298)
22 PF03162 Y_phosphatase2: Tyros 99.3 5E-12 1.1E-16 90.1 4.6 130 9-142 17-152 (164)
23 TIGR01244 conserved hypothetic 99.3 2.1E-10 4.6E-15 79.2 12.5 114 3-123 6-128 (135)
24 PHA02746 protein tyrosine phos 99.2 1.2E-10 2.6E-15 91.2 11.2 89 47-135 201-308 (323)
25 PHA02747 protein tyrosine phos 99.2 1.8E-10 3.9E-15 89.9 9.9 54 80-133 230-288 (312)
26 PHA02738 hypothetical protein; 99.2 3.9E-10 8.5E-15 88.2 10.9 56 79-134 227-287 (320)
27 PF00102 Y_phosphatase: Protei 99.1 3.7E-10 8E-15 83.6 9.2 83 53-135 140-231 (235)
28 KOG0792|consensus 99.1 3.3E-10 7.2E-15 97.6 8.7 81 55-135 1038-1124(1144)
29 COG5599 PTP2 Protein tyrosine 99.0 6.8E-10 1.5E-14 83.4 4.4 77 65-141 201-294 (302)
30 PLN02727 NAD kinase 99.0 3.7E-09 8E-14 91.0 9.0 101 5-108 262-370 (986)
31 PF13350 Y_phosphatase3: Tyros 98.9 4.3E-09 9.3E-14 74.8 8.0 106 9-115 27-159 (164)
32 PF14566 PTPlike_phytase: Inos 98.9 2.1E-09 4.6E-14 75.4 6.0 59 43-103 90-148 (149)
33 COG5350 Predicted protein tyro 98.9 4.3E-09 9.2E-14 73.2 7.1 69 62-131 77-146 (172)
34 KOG0791|consensus 98.7 1.4E-07 3.1E-12 73.8 10.1 92 47-138 254-351 (374)
35 KOG0790|consensus 98.7 3E-08 6.4E-13 79.4 5.3 88 47-134 416-514 (600)
36 KOG2283|consensus 98.6 1.2E-07 2.5E-12 76.8 6.2 92 47-139 74-173 (434)
37 KOG0793|consensus 98.5 2.4E-07 5.2E-12 77.7 6.2 88 44-133 893-987 (1004)
38 KOG2386|consensus 98.4 3.1E-07 6.7E-12 73.1 5.0 104 38-141 79-186 (393)
39 KOG0789|consensus 98.4 2.3E-06 5.1E-11 68.7 10.2 86 49-134 265-360 (415)
40 PF04273 DUF442: Putative phos 98.4 5.9E-07 1.3E-11 59.9 5.5 87 6-98 9-104 (110)
41 COG2365 Protein tyrosine/serin 98.3 4.7E-06 1E-10 63.2 8.1 63 65-127 121-184 (249)
42 KOG4228|consensus 98.3 1.4E-06 3E-11 76.2 5.7 67 66-132 713-788 (1087)
43 PF04179 Init_tRNA_PT: Initiat 98.3 5.8E-06 1.3E-10 67.4 8.9 96 41-136 334-449 (451)
44 KOG1572|consensus 98.3 7.7E-06 1.7E-10 60.9 8.5 106 12-120 73-188 (249)
45 KOG4228|consensus 98.1 8.1E-06 1.8E-10 71.6 7.3 91 46-136 979-1080(1087)
46 COG3453 Uncharacterized protei 97.6 0.00081 1.8E-08 45.2 8.2 71 41-118 54-124 (130)
47 PF14671 DSPn: Dual specificit 97.1 0.0016 3.4E-08 45.3 5.2 67 54-121 39-112 (141)
48 KOG4471|consensus 97.0 0.0014 3.1E-08 54.7 5.0 39 65-103 360-399 (717)
49 PF06602 Myotub-related: Myotu 94.9 0.066 1.4E-06 42.7 5.5 21 77-97 229-249 (353)
50 KOG1089|consensus 94.8 0.063 1.4E-06 45.1 5.2 31 67-97 331-362 (573)
51 cd01448 TST_Repeat_1 Thiosulfa 86.2 2.8 6E-05 27.6 5.4 41 66-108 65-106 (122)
52 PLN02160 thiosulfate sulfurtra 86.0 1.5 3.3E-05 30.0 4.1 21 76-97 78-98 (136)
53 cd01533 4RHOD_Repeat_2 Member 84.5 3.6 7.8E-05 26.5 5.2 27 78-107 65-91 (109)
54 cd01518 RHOD_YceA Member of th 83.9 1.8 3.9E-05 27.5 3.5 28 77-107 59-86 (101)
55 COG0607 PspE Rhodanese-related 80.1 2.2 4.7E-05 27.2 2.9 26 76-103 58-83 (110)
56 cd01523 RHOD_Lact_B Member of 80.0 2.5 5.3E-05 26.8 3.1 28 77-107 59-86 (100)
57 cd01522 RHOD_1 Member of the R 79.3 4.6 9.9E-05 26.6 4.3 21 76-97 61-81 (117)
58 PF03861 ANTAR: ANTAR domain; 78.6 3.3 7.1E-05 23.8 3.0 25 95-119 16-40 (56)
59 cd01520 RHOD_YbbB Member of th 78.4 6.6 0.00014 26.2 4.9 30 76-107 83-112 (128)
60 smart00400 ZnF_CHCC zinc finge 78.1 3.3 7.1E-05 23.6 2.9 32 83-116 23-54 (55)
61 PRK05728 DNA polymerase III su 77.5 5.8 0.00013 27.4 4.5 26 64-89 14-39 (142)
62 PF04364 DNA_pol3_chi: DNA pol 77.4 5.3 0.00011 27.4 4.3 24 65-88 15-38 (137)
63 PRK06646 DNA polymerase III su 75.7 8.3 0.00018 27.2 4.9 26 64-89 14-39 (154)
64 TIGR03865 PQQ_CXXCW PQQ-depend 75.3 4.5 9.8E-05 28.5 3.6 29 77-107 114-142 (162)
65 PRK10886 DnaA initiator-associ 75.1 6.7 0.00014 28.7 4.5 39 62-103 24-62 (196)
66 COG2927 HolC DNA polymerase II 73.9 4.3 9.3E-05 28.3 3.0 23 66-88 16-38 (144)
67 PRK01415 hypothetical protein; 73.0 8.9 0.00019 29.2 4.8 28 77-107 169-196 (247)
68 PF00581 Rhodanese: Rhodanese- 72.9 18 0.00039 22.7 5.8 48 49-97 34-84 (113)
69 PRK05772 translation initiatio 71.0 10 0.00022 30.6 4.9 13 78-90 166-178 (363)
70 PRK00142 putative rhodanese-re 70.9 9 0.00019 30.1 4.6 27 78-107 170-196 (314)
71 cd01532 4RHOD_Repeat_1 Member 70.5 8.5 0.00018 24.0 3.7 26 78-103 49-74 (92)
72 cd05567 PTS_IIB_mannitol PTS_I 70.4 5.2 0.00011 24.9 2.7 18 80-97 1-18 (87)
73 PF01807 zf-CHC2: CHC2 zinc fi 70.3 6.4 0.00014 25.3 3.1 36 83-120 54-89 (97)
74 cd01528 RHOD_2 Member of the R 70.2 12 0.00027 23.5 4.5 28 78-108 57-84 (101)
75 PRK05320 rhodanese superfamily 69.5 10 0.00022 28.9 4.5 27 78-107 174-200 (257)
76 TIGR00512 salvage_mtnA S-methy 68.9 13 0.00028 29.6 5.1 12 78-89 142-157 (331)
77 TIGR00853 pts-lac PTS system, 68.9 4.5 9.7E-05 26.0 2.1 59 80-140 4-71 (95)
78 PRK06036 translation initiatio 67.4 13 0.00028 29.6 4.9 17 78-94 147-163 (339)
79 TIGR03642 cas_csx13 CRISPR-ass 65.5 17 0.00037 24.7 4.5 63 44-106 52-116 (124)
80 PRK13938 phosphoheptose isomer 65.0 16 0.00034 26.7 4.6 42 60-104 26-67 (196)
81 PF03668 ATP_bind_2: P-loop AT 64.6 10 0.00023 29.5 3.7 17 81-97 244-260 (284)
82 PRK10287 thiosulfate:cyanide s 64.6 17 0.00036 23.7 4.2 19 78-97 59-77 (104)
83 cd01443 Cdc25_Acr2p Cdc25 enzy 64.2 17 0.00036 23.6 4.2 20 78-97 65-84 (113)
84 cd01444 GlpE_ST GlpE sulfurtra 63.6 29 0.00063 21.3 5.2 19 76-95 53-71 (96)
85 PRK05720 mtnA methylthioribose 63.4 20 0.00043 28.7 5.2 15 78-92 146-160 (344)
86 PF10302 DUF2407: DUF2407 ubiq 62.7 4.5 9.7E-05 26.2 1.2 10 80-89 86-95 (97)
87 COG1660 Predicted P-loop-conta 62.5 17 0.00037 28.1 4.5 17 81-97 245-261 (286)
88 PHA03338 US22 family homolog; 62.1 8.4 0.00018 30.0 2.8 42 83-124 160-202 (344)
89 PF02302 PTS_IIB: PTS system, 61.8 6.5 0.00014 24.3 1.9 16 81-96 1-16 (90)
90 cd01519 RHOD_HSP67B2 Member of 61.2 11 0.00023 23.9 2.8 27 78-107 65-91 (106)
91 cd01534 4RHOD_Repeat_3 Member 61.0 13 0.00028 23.2 3.2 27 78-107 55-81 (95)
92 cd01526 RHOD_ThiF Member of th 61.0 8.9 0.00019 25.3 2.5 28 77-107 70-97 (122)
93 cd01525 RHOD_Kc Member of the 60.8 16 0.00035 23.0 3.7 18 79-97 65-82 (105)
94 cd01529 4RHOD_Repeats Member o 60.2 11 0.00024 23.5 2.8 28 77-107 54-81 (96)
95 PRK05416 glmZ(sRNA)-inactivati 59.9 14 0.0003 28.7 3.7 17 81-97 247-263 (288)
96 PRK08334 translation initiatio 59.7 22 0.00049 28.6 4.9 11 80-90 161-171 (356)
97 PF02673 BacA: Bacitracin resi 59.4 14 0.00029 28.4 3.5 26 87-114 159-184 (259)
98 cd01530 Cdc25 Cdc25 phosphatas 59.3 13 0.00028 24.7 3.1 26 77-103 66-91 (121)
99 cd01447 Polysulfide_ST Polysul 59.1 9.9 0.00021 23.8 2.4 28 76-106 58-85 (103)
100 PRK11493 sseA 3-mercaptopyruva 57.6 13 0.00028 28.5 3.2 18 77-95 229-246 (281)
101 cd01527 RHOD_YgaP Member of th 56.3 17 0.00036 22.7 3.1 19 76-95 51-69 (99)
102 KOG1530|consensus 55.7 18 0.00039 24.9 3.2 47 47-95 57-104 (136)
103 COG0794 GutQ Predicted sugar p 55.6 36 0.00079 25.1 5.1 34 65-104 28-61 (202)
104 cd01521 RHOD_PspE2 Member of t 54.9 32 0.00069 22.0 4.4 30 76-107 61-91 (110)
105 TIGR02981 phageshock_pspE phag 54.4 33 0.00073 22.0 4.3 19 78-97 57-75 (101)
106 TIGR00753 undec_PP_bacA undeca 54.2 17 0.00037 27.8 3.3 25 88-114 160-184 (255)
107 COG2897 SseA Rhodanese-related 54.1 17 0.00038 28.2 3.4 18 76-93 231-248 (285)
108 TIGR01391 dnaG DNA primase, ca 53.4 52 0.0011 26.9 6.2 36 83-120 55-90 (415)
109 PRK12554 undecaprenyl pyrophos 53.0 18 0.00039 28.0 3.3 25 88-114 166-190 (276)
110 PF13580 SIS_2: SIS domain; PD 51.6 47 0.001 22.5 4.9 33 63-98 19-51 (138)
111 PRK09590 celB cellobiose phosp 51.4 12 0.00027 24.4 1.9 14 80-93 2-15 (104)
112 COG3564 Uncharacterized protei 51.0 26 0.00057 22.8 3.3 27 65-91 10-36 (116)
113 PRK00281 undecaprenyl pyrophos 50.7 21 0.00046 27.5 3.3 25 88-114 164-188 (268)
114 PRK00414 gmhA phosphoheptose i 50.6 41 0.00089 24.3 4.7 33 62-97 27-59 (192)
115 PRK05569 flavodoxin; Provision 49.9 58 0.0013 21.8 5.2 91 44-141 49-140 (141)
116 TIGR01550 DOC_P1 death-on-curi 49.6 76 0.0017 21.2 7.0 52 63-120 49-105 (121)
117 cd01531 Acr2p Eukaryotic arsen 49.6 39 0.00085 21.7 4.2 20 78-97 61-80 (113)
118 PRK05667 dnaG DNA primase; Val 49.5 67 0.0015 27.6 6.4 41 81-123 55-95 (580)
119 PRK10310 PTS system galactitol 47.6 17 0.00038 23.1 2.1 18 80-97 3-20 (94)
120 PF06415 iPGM_N: BPG-independe 47.3 24 0.00051 26.5 3.0 53 48-103 30-85 (223)
121 PHA02540 61 DNA primase; Provi 47.1 54 0.0012 26.2 5.2 38 80-120 52-90 (337)
122 TIGR03167 tRNA_sel_U_synt tRNA 46.8 34 0.00073 26.9 4.0 20 78-97 73-92 (311)
123 PRK11784 tRNA 2-selenouridine 46.6 36 0.00078 27.2 4.2 20 78-97 87-106 (345)
124 PF09623 Cas_NE0113: CRISPR-as 46.0 36 0.00078 25.5 3.9 42 65-106 97-138 (224)
125 COG3707 AmiR Response regulato 44.6 29 0.00063 25.5 3.1 23 98-120 151-173 (194)
126 COG0182 Predicted translation 44.6 15 0.00032 29.2 1.7 29 78-106 149-181 (346)
127 cd05564 PTS_IIB_chitobiose_lic 43.7 20 0.00044 22.8 2.0 58 81-140 1-67 (96)
128 PRK09629 bifunctional thiosulf 43.5 51 0.0011 28.5 4.8 28 77-107 221-248 (610)
129 cd01720 Sm_D2 The eukaryotic S 43.1 35 0.00075 21.6 2.9 28 69-96 4-31 (87)
130 TIGR02613 mob_myst_B mobile my 43.0 26 0.00057 25.2 2.7 29 82-110 120-149 (186)
131 PRK10499 PTS system N,N'-diace 43.0 26 0.00057 22.9 2.5 59 80-138 4-69 (106)
132 PRK13936 phosphoheptose isomer 42.4 78 0.0017 22.9 5.1 34 64-100 28-61 (197)
133 PF01964 ThiC: ThiC family; I 42.1 66 0.0014 26.4 5.0 53 65-117 138-208 (420)
134 PRK07411 hypothetical protein; 41.6 37 0.00081 27.5 3.6 28 78-108 341-368 (390)
135 PRK06371 translation initiatio 41.5 31 0.00068 27.4 3.1 23 69-91 127-149 (329)
136 PF03853 YjeF_N: YjeF-related 40.4 53 0.0011 23.1 3.9 42 67-108 11-54 (169)
137 PF14532 Sigma54_activ_2: Sigm 40.4 59 0.0013 21.7 4.0 32 64-95 6-37 (138)
138 cd05565 PTS_IIB_lactose PTS_II 40.3 26 0.00057 22.7 2.1 57 81-140 2-68 (99)
139 PRK13352 thiamine biosynthesis 39.1 67 0.0015 26.5 4.6 53 65-117 142-212 (431)
140 TIGR01245 trpD anthranilate ph 39.0 1.2E+02 0.0025 24.1 6.0 62 68-134 90-156 (330)
141 smart00489 DEXDc3 DEAD-like he 38.0 88 0.0019 24.1 5.1 35 67-101 15-49 (289)
142 smart00488 DEXDc2 DEAD-like he 38.0 88 0.0019 24.1 5.1 35 67-101 15-49 (289)
143 cd00133 PTS_IIB PTS_IIB: subun 38.0 26 0.00057 20.6 1.8 17 81-97 1-17 (84)
144 COG1440 CelA Phosphotransferas 38.0 31 0.00067 22.6 2.1 63 80-143 2-72 (102)
145 PRK08624 hypothetical protein; 37.9 21 0.00045 28.9 1.6 38 83-121 59-101 (373)
146 PRK00162 glpE thiosulfate sulf 37.7 1E+02 0.0023 19.4 4.8 34 70-107 50-83 (108)
147 COG1968 BacA Undecaprenyl pyro 37.6 45 0.00097 25.8 3.3 24 88-113 165-188 (270)
148 PRK10347 cell filamentation pr 37.4 46 0.001 24.5 3.3 44 83-126 133-181 (200)
149 cd01449 TST_Repeat_2 Thiosulfa 36.6 64 0.0014 20.6 3.6 28 77-107 76-103 (118)
150 PRK11449 putative deoxyribonuc 36.2 58 0.0013 24.7 3.8 54 65-118 113-172 (258)
151 smart00450 RHOD Rhodanese Homo 35.5 99 0.0021 18.4 4.7 28 77-107 54-81 (100)
152 TIGR02094 more_P_ylases alpha- 35.2 50 0.0011 28.5 3.5 36 80-118 161-199 (601)
153 TIGR00190 thiC thiamine biosyn 35.0 86 0.0019 25.8 4.6 53 65-117 139-209 (423)
154 COG0358 DnaG DNA primase (bact 34.5 2E+02 0.0044 24.5 7.1 55 50-121 36-91 (568)
155 TIGR03121 one_C_dehyd_A formyl 34.2 12 0.00025 32.0 -0.4 21 71-91 220-241 (556)
156 COG1229 FwdA Formylmethanofura 34.0 8 0.00017 31.9 -1.3 24 65-88 217-240 (575)
157 PF00580 UvrD-helicase: UvrD/R 34.0 48 0.001 24.9 3.1 34 78-111 12-47 (315)
158 COG1831 Predicted metal-depend 33.8 1.8E+02 0.0039 22.7 6.0 71 44-119 34-109 (285)
159 COG4050 Uncharacterized protei 33.7 96 0.0021 21.1 4.0 75 43-120 57-141 (152)
160 PRK05600 thiamine biosynthesis 33.3 34 0.00074 27.5 2.2 25 80-107 333-357 (370)
161 PRK02947 hypothetical protein; 33.0 76 0.0016 23.9 3.9 32 63-97 24-55 (246)
162 COG1054 Predicted sulfurtransf 32.2 1E+02 0.0023 24.3 4.5 57 62-121 153-216 (308)
163 PRK15043 transcriptional regul 31.8 1.2E+02 0.0025 23.2 4.7 64 78-141 161-236 (243)
164 PF01026 TatD_DNase: TatD rela 31.6 40 0.00087 25.3 2.2 32 68-99 113-144 (255)
165 cd01535 4RHOD_Repeat_4 Member 31.5 1.3E+02 0.0027 20.6 4.6 25 77-103 47-71 (145)
166 cd05566 PTS_IIB_galactitol PTS 31.3 53 0.0011 20.1 2.4 18 80-97 1-18 (89)
167 COG0084 TatD Mg-dependent DNas 31.3 56 0.0012 25.0 3.0 33 65-97 111-143 (256)
168 PF12554 MOZART1: Mitotic-spin 31.2 1E+02 0.0022 17.3 4.6 32 88-120 17-48 (48)
169 PRK01269 tRNA s(4)U8 sulfurtra 31.1 81 0.0018 26.3 4.1 24 77-102 447-470 (482)
170 TIGR02093 P_ylase glycogen/sta 31.0 61 0.0013 29.0 3.5 39 79-120 296-338 (794)
171 PF15195 TMEM210: TMEM210 fami 30.8 78 0.0017 20.5 3.1 32 83-114 2-33 (116)
172 cd05563 PTS_IIB_ascorbate PTS_ 30.0 54 0.0012 20.0 2.3 17 81-97 1-17 (86)
173 cd01304 FMDH_A Formylmethanofu 29.7 14 0.0003 31.4 -0.6 21 7-28 166-186 (541)
174 cd01701 PolY_Rev1 DNA polymera 29.7 28 0.0006 28.2 1.1 51 64-115 56-110 (404)
175 TIGR03573 WbuX N-acetyl sugar 29.6 1.4E+02 0.003 23.7 5.0 31 87-118 284-314 (343)
176 TIGR02584 cas_NE0113 CRISPR-as 29.6 1.1E+02 0.0023 22.8 4.1 41 66-106 104-144 (209)
177 PRK10425 DNase TatD; Provision 29.4 68 0.0015 24.3 3.2 28 66-93 108-135 (258)
178 COG1228 HutI Imidazolonepropio 29.1 2.4E+02 0.0051 23.1 6.4 46 71-117 298-346 (406)
179 PF06134 RhaA: L-rhamnose isom 29.1 2.2E+02 0.0047 23.5 5.9 78 66-144 302-417 (417)
180 PF13344 Hydrolase_6: Haloacid 28.7 1.5E+02 0.0032 18.8 4.3 56 65-122 16-80 (101)
181 PLN02723 3-mercaptopyruvate su 28.6 65 0.0014 25.2 3.0 19 76-95 266-284 (320)
182 TIGR00644 recJ single-stranded 28.6 1.6E+02 0.0034 25.0 5.5 53 55-107 30-83 (539)
183 COG3414 SgaB Phosphotransferas 28.6 52 0.0011 21.1 2.1 29 80-108 2-32 (93)
184 TIGR01502 B_methylAsp_ase meth 28.5 2.3E+02 0.0051 23.2 6.2 54 65-118 334-396 (408)
185 PF12668 DUF3791: Protein of u 28.2 1.3E+02 0.0028 17.4 3.6 24 97-120 7-30 (62)
186 COG3867 Arabinogalactan endo-1 28.2 84 0.0018 25.1 3.4 74 12-85 40-123 (403)
187 cd01524 RHOD_Pyr_redox Member 27.9 82 0.0018 19.1 2.9 19 76-95 48-66 (90)
188 cd00308 enolase_like Enolase-s 27.8 1.7E+02 0.0038 21.3 5.1 27 65-91 182-208 (229)
189 TIGR00524 eIF-2B_rel eIF-2B al 27.6 74 0.0016 24.9 3.1 13 78-90 118-130 (303)
190 PF10096 DUF2334: Uncharacteri 27.5 1.9E+02 0.0041 21.7 5.2 42 46-87 32-76 (243)
191 COG3265 GntK Gluconate kinase 27.3 54 0.0012 23.3 2.1 65 51-125 42-117 (161)
192 cd05006 SIS_GmhA Phosphoheptos 27.0 1.8E+02 0.004 20.2 4.9 32 63-97 17-48 (177)
193 TIGR00197 yjeF_nterm yjeF N-te 26.9 1.9E+02 0.0042 21.0 5.1 36 68-103 34-70 (205)
194 PF00270 DEAD: DEAD/DEAH box h 26.9 1.9E+02 0.0041 19.3 4.9 30 72-102 8-37 (169)
195 PRK08335 translation initiatio 26.5 1.7E+02 0.0037 22.7 4.9 12 77-88 108-119 (275)
196 cd00158 RHOD Rhodanese Homolog 26.2 1.3E+02 0.0027 17.6 3.5 18 77-95 48-65 (89)
197 PRK08762 molybdopterin biosynt 26.1 1.8E+02 0.0038 23.3 5.1 28 77-107 55-82 (376)
198 PF00308 Bac_DnaA: Bacterial d 25.5 1.5E+02 0.0032 21.8 4.3 20 80-99 35-54 (219)
199 TIGR01927 menC_gamma/gm+ o-suc 25.3 1.1E+02 0.0024 23.7 3.8 31 65-95 243-275 (307)
200 cd07944 DRE_TIM_HOA_like 4-hyd 24.9 2.8E+02 0.006 21.1 5.8 84 50-134 154-252 (266)
201 TIGR03217 4OH_2_O_val_ald 4-hy 24.8 2.8E+02 0.006 22.0 5.9 48 50-97 159-206 (333)
202 PF13378 MR_MLE_C: Enolase C-t 24.6 1.9E+02 0.0042 18.3 4.7 23 65-87 32-54 (111)
203 PRK00188 trpD anthranilate pho 24.4 2E+02 0.0044 22.7 5.2 46 77-125 101-151 (339)
204 TIGR01307 pgm_bpd_ind 2,3-bisp 24.4 1.5E+02 0.0032 25.2 4.5 53 48-103 108-163 (501)
205 PRK05986 cob(I)alamin adenolsy 24.2 1.9E+02 0.0042 21.1 4.6 27 77-103 20-47 (191)
206 PF00343 Phosphorylase: Carboh 24.1 2.4E+02 0.0052 25.1 5.8 38 80-120 214-255 (713)
207 KOG1529|consensus 24.0 1.1E+02 0.0025 23.8 3.5 28 73-100 230-257 (286)
208 PRK10812 putative DNAse; Provi 23.7 1.1E+02 0.0024 23.3 3.4 24 68-91 113-136 (265)
209 COG4992 ArgD Ornithine/acetylo 23.6 1.1E+02 0.0025 25.0 3.6 33 66-98 204-238 (404)
210 PRK14985 maltodextrin phosphor 23.5 1.7E+02 0.0038 26.3 4.9 39 79-120 301-343 (798)
211 PRK05333 NAD-dependent deacety 23.4 96 0.0021 23.9 3.0 20 75-94 15-34 (285)
212 cd00530 PTE Phosphotriesterase 23.0 97 0.0021 23.4 3.0 21 69-89 139-159 (293)
213 PRK05105 O-succinylbenzoate sy 23.0 1E+02 0.0023 24.1 3.2 35 65-99 244-280 (322)
214 cd01310 TatD_DNAse TatD like p 23.0 1.1E+02 0.0023 22.3 3.2 22 68-89 110-131 (251)
215 PF06564 YhjQ: YhjQ protein; 22.9 98 0.0021 23.5 2.9 20 87-106 10-30 (243)
216 COG0547 TrpD Anthranilate phos 22.7 1.6E+02 0.0034 23.6 4.2 65 65-134 93-162 (338)
217 COG1513 CynS Cyanate lyase [In 22.7 1.5E+02 0.0033 20.5 3.5 26 87-112 28-53 (151)
218 KOG0781|consensus 22.6 1.8E+02 0.004 24.8 4.6 37 69-106 366-406 (587)
219 PF13720 Acetyltransf_11: Udp 22.5 2E+02 0.0044 17.8 4.2 35 88-122 26-63 (83)
220 cd00079 HELICc Helicase superf 22.5 1.9E+02 0.0041 18.2 4.0 25 64-88 13-37 (131)
221 PF12921 ATP13: Mitochondrial 22.4 2.5E+02 0.0054 18.8 4.8 31 111-142 73-103 (126)
222 PRK08195 4-hyroxy-2-oxovalerat 22.3 3.4E+02 0.0074 21.5 6.0 48 50-97 160-207 (337)
223 PLN02538 2,3-bisphosphoglycera 22.2 2.6E+02 0.0055 24.1 5.5 53 48-103 129-184 (558)
224 PTZ00138 small nuclear ribonuc 22.1 1.1E+02 0.0023 19.5 2.5 25 69-93 16-40 (89)
225 COG0422 ThiC Thiamine biosynth 22.1 1.9E+02 0.0041 23.8 4.5 46 65-110 140-202 (432)
226 cd00687 Terpene_cyclase_nonpla 22.1 2.5E+02 0.0053 21.3 5.1 23 98-120 232-254 (303)
227 COG3654 Doc Prophage maintenan 22.0 2.7E+02 0.006 19.1 7.7 75 61-141 50-130 (132)
228 PF13147 Amidohydro_4: Amidohy 22.0 3.1E+02 0.0068 19.8 6.9 53 65-117 222-279 (304)
229 KOG1838|consensus 21.9 63 0.0014 26.6 1.8 56 68-123 143-198 (409)
230 KOG1905|consensus 21.9 85 0.0018 24.9 2.4 36 60-95 36-71 (353)
231 PRK05434 phosphoglyceromutase; 21.8 1.8E+02 0.0038 24.7 4.5 54 47-103 111-167 (507)
232 PF10727 Rossmann-like: Rossma 21.7 76 0.0016 21.5 1.9 29 65-93 81-110 (127)
233 TIGR00010 hydrolase, TatD fami 21.5 1.7E+02 0.0037 21.2 4.1 22 67-88 109-130 (252)
234 COG2230 Cfa Cyclopropane fatty 21.5 1.7E+02 0.0036 22.8 4.0 78 65-142 155-241 (283)
235 TIGR03819 heli_sec_ATPase heli 21.1 2.4E+02 0.0051 22.4 4.9 32 67-98 166-197 (340)
236 PF12682 Flavodoxin_4: Flavodo 20.8 91 0.002 21.7 2.3 46 41-92 71-116 (156)
237 COG0394 Wzb Protein-tyrosine-p 20.8 75 0.0016 21.8 1.8 18 80-97 3-20 (139)
238 PF12643 MazG-like: MazG-like 20.3 2.5E+02 0.0055 18.1 5.7 20 93-112 42-62 (98)
239 PRK11773 uvrD DNA-dependent he 20.3 2.6E+02 0.0056 24.6 5.4 34 78-111 21-56 (721)
240 COG3673 Uncharacterized conser 20.1 4E+02 0.0087 21.6 5.8 77 61-140 103-189 (423)
241 PRK08903 DnaA regulatory inact 20.1 3.3E+02 0.0072 19.6 5.3 21 78-98 41-61 (227)
242 PF10740 DUF2529: Protein of u 20.0 1.4E+02 0.003 21.6 3.0 26 64-89 23-48 (172)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.96 E-value=1.9e-28 Score=169.52 Aligned_cols=132 Identities=34% Similarity=0.478 Sum_probs=115.0
Q ss_pred CCCCcccchhhhHHHHHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEE
Q psy1565 5 PAWGLPTFAGTFHHAIISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYV 84 (146)
Q Consensus 5 ~~w~~~~l~~~~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlV 84 (146)
+.|-...........+...|++++++.....+. ....+++|+++|+.|....++.+.+.++++||+.....|++|||
T Consensus 7 ~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlV 83 (138)
T smart00195 7 HLYLGSYSSALNLALLKKLGITHVINVTNEVPN---LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLV 83 (138)
T ss_pred CeEECChhHcCCHHHHHHcCCCEEEEccCCCCC---CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEE
Confidence 345455555556777888888888888765543 34688999999999977777778899999999999999999999
Q ss_pred EcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHH
Q psy1565 85 HCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQK 139 (146)
Q Consensus 85 HC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~ 139 (146)
||.+|.|||++++++|+|...|+++++|+++++++||.+.||++|.++|.+||++
T Consensus 84 HC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 84 HCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred ECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999973
No 2
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.96 E-value=1.1e-28 Score=169.48 Aligned_cols=127 Identities=31% Similarity=0.469 Sum_probs=114.4
Q ss_pred chhhhHHHHHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCc
Q psy1565 12 FAGTFHHAIISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGIS 91 (146)
Q Consensus 12 l~~~~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~ 91 (146)
.... ...+-+.|++++++..............+++|+++|+.|....++.+.++.+.+||+.+..+|++|||||.+|+|
T Consensus 7 ~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~ 85 (133)
T PF00782_consen 7 PAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLS 85 (133)
T ss_dssp HHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred HHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcc
Confidence 3445 777889999999988766544333567899999999999777888888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHH
Q psy1565 92 RSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQK 139 (146)
Q Consensus 92 RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~ 139 (146)
||++++++|||...++++++|++++++.||.+.||++|.++|.+||++
T Consensus 86 RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 86 RSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999975
No 3
>KOG1718|consensus
Probab=99.96 E-value=2.1e-28 Score=171.00 Aligned_cols=123 Identities=28% Similarity=0.383 Sum_probs=111.5
Q ss_pred HHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHH
Q psy1565 20 IISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIA 99 (146)
Q Consensus 20 l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~a 99 (146)
+-+.+++.+++...+..+ -.-.++.|..+|+.|.+...+.++|+.+.+.|......||++||||.+|++||+++|+|
T Consensus 38 l~~~~It~IiNat~E~pn---~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClA 114 (198)
T KOG1718|consen 38 LKKRKITCIINATTEVPN---TSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLA 114 (198)
T ss_pred HHhcCceEEEEcccCCCC---ccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHH
Confidence 446778888887533322 33578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHhcCCCC
Q psy1565 100 YIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDSQ 145 (146)
Q Consensus 100 ylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~~~~~ 145 (146)
|||++.++++.||+.+++++||.++||-+|++||.+||.+|.++.-
T Consensus 115 YLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~s 160 (198)
T KOG1718|consen 115 YLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNAS 160 (198)
T ss_pred HHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCe
Confidence 9999999999999999999999999999999999999999998753
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=4.3e-27 Score=162.35 Aligned_cols=131 Identities=35% Similarity=0.495 Sum_probs=113.0
Q ss_pred CCCcccchhhhHHHHHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEE
Q psy1565 6 AWGLPTFAGTFHHAIISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVH 85 (146)
Q Consensus 6 ~w~~~~l~~~~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVH 85 (146)
.|-...........|.+.|++++++.....+. +.....+++|+++|+.|++.+++...++.+++||+.....+++|+||
T Consensus 9 l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVH 87 (139)
T cd00127 9 LYLGSYPAASDKELLKKLGITHVLNVAKEVPN-ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVH 87 (139)
T ss_pred eEECChhHhcCHHHHHHcCCCEEEEcccCCCC-cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 33333444445666778888888888765543 44557899999999999987777777999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHH
Q psy1565 86 CNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWE 137 (146)
Q Consensus 86 C~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~ 137 (146)
|.+|.|||++++++|+|...++++.+|++++|+.||.+.||+.|+.||.+||
T Consensus 88 C~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 88 CLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999986
No 5
>KOG1716|consensus
Probab=99.94 E-value=4.1e-26 Score=175.36 Aligned_cols=133 Identities=35% Similarity=0.528 Sum_probs=116.9
Q ss_pred hhhhHHHHHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCch
Q psy1565 13 AGTFHHAIISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISR 92 (146)
Q Consensus 13 ~~~~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~R 92 (146)
.......+-..|++++++..............+++|+++|+.|.+..++..+|+++++||+.+..+|++|||||.+|++|
T Consensus 89 ~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSR 168 (285)
T KOG1716|consen 89 VASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSR 168 (285)
T ss_pred cccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccch
Confidence 34455556788888888886555432222334899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHhcCCCC
Q psy1565 93 SATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDSQ 145 (146)
Q Consensus 93 S~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~~~~~ 145 (146)
|+++++||+|...++++.+|+.+|+++||.+.||.+|+.||.+|++.+.++..
T Consensus 169 Sat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~ 221 (285)
T KOG1716|consen 169 SATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSP 221 (285)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCc
Confidence 99999999999999999999999999999999999999999999999988643
No 6
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.93 E-value=5e-25 Score=163.30 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=114.2
Q ss_pred hhhhHHHHHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCch
Q psy1565 13 AGTFHHAIISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISR 92 (146)
Q Consensus 13 ~~~~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~R 92 (146)
....+..+-..|++++++..+..+........||+|+++|+.|...|+.. .+.+++++++...+.|++|+|||.+|+||
T Consensus 105 ~~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~-~i~~~l~~i~~~l~~g~~VaVHC~AGlGR 183 (241)
T PTZ00393 105 LPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVD-IVSNWLTIVNNVIKNNRAVAVHCVAGLGR 183 (241)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHH-HHHHHHHHHHHHHhcCCeEEEECCCCCCH
Confidence 35677888899999999988777665666788999999999999877755 47889999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy1565 93 SATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDS 144 (146)
Q Consensus 93 S~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~~~~ 144 (146)
||+++++|||. .|+++++|+++||+.||.+. +..|++.|.+|+++..+++
T Consensus 184 TGtl~AayLI~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~k~~ 233 (241)
T PTZ00393 184 APVLASIVLIE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKKKKN 233 (241)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccccc
Confidence 99999999997 79999999999999999884 8899999999999987664
No 7
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.93 E-value=6.8e-25 Score=156.52 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=107.1
Q ss_pred hhhHHHHHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhC----CCcEEEEcCCC
Q psy1565 14 GTFHHAIISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHND----QSTVYVHCNAG 89 (146)
Q Consensus 14 ~~~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~----g~~vlVHC~~G 89 (146)
...+..|-..|++++++..+..+........+++|+++|+.|...|+.. .+.++++++++..+. |++|+|||.+|
T Consensus 30 ~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~-~i~~~~~~i~~~~~~~~~~g~~V~VHC~aG 108 (166)
T PTZ00242 30 PLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKA-VIDNWLRLLDQEFAKQSTPPETIAVHCVAG 108 (166)
T ss_pred HHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHH-HHHHHHHHHHHHHHhhccCCCeEEEECCCC
Confidence 4556778888888888886654443445567999999999998766654 477888888887754 89999999999
Q ss_pred CchhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHhcCC
Q psy1565 90 ISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKD 143 (146)
Q Consensus 90 ~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~~~ 143 (146)
+||||+++++|||...++++.+|+..+|++||.+. ++.|..+|.+|++.+.+.
T Consensus 109 igRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 109 LGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhccC
Confidence 99999999999999889999999999999999875 789999999999887653
No 8
>KOG1717|consensus
Probab=99.91 E-value=1.8e-24 Score=161.04 Aligned_cols=103 Identities=37% Similarity=0.594 Sum_probs=97.8
Q ss_pred CCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCC
Q psy1565 42 KTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRP 121 (146)
Q Consensus 42 ~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp 121 (146)
....+.|..+|+.|....++.+.|+++++||++++.+...|||||-+|++||++++++|||.....++.+|+++|+.++.
T Consensus 214 ~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kks 293 (343)
T KOG1717|consen 214 NNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKS 293 (343)
T ss_pred cCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhcc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCC
Q psy1565 122 CIKPNPGFLRQLKEWEQKHLKDS 144 (146)
Q Consensus 122 ~~~p~~~~~~~L~~~~~~l~~~~ 144 (146)
.+.||..|+.||..||+.+-.++
T Consensus 294 nisPNFnFMgQLldfertlgl~s 316 (343)
T KOG1717|consen 294 NISPNFNFMGQLLDFERTLGLES 316 (343)
T ss_pred CCCCCcchhHHHHHHHHHhhccC
Confidence 99999999999999999875543
No 9
>KOG1719|consensus
Probab=99.90 E-value=2.6e-23 Score=143.67 Aligned_cols=128 Identities=27% Similarity=0.278 Sum_probs=106.8
Q ss_pred HHHHHHhccccccccCcccCCCC---CCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchh
Q psy1565 17 HHAIISVGRSDRVTEGETKEGVT---EGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRS 93 (146)
Q Consensus 17 i~~l~~~g~~~~~~~~~~~~~~~---~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS 93 (146)
...+...|+-.++...+..+... ..+..|++++.+|..|....+-.+.+.++++||.+....|+.|||||.+|.+||
T Consensus 44 ~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRS 123 (183)
T KOG1719|consen 44 VPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRS 123 (183)
T ss_pred chHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccc
Confidence 33444555555665555554433 356789999999999987444344599999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy1565 94 ATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDS 144 (146)
Q Consensus 94 ~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~~~~ 144 (146)
++++++|||...+|++++|++++|++||.+...+.+++.+.+|.+.+...+
T Consensus 124 aTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 124 ATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVANA 174 (183)
T ss_pred hhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999887643
No 10
>PRK12361 hypothetical protein; Provisional
Probab=99.90 E-value=7.2e-23 Score=169.58 Aligned_cols=130 Identities=17% Similarity=0.198 Sum_probs=110.0
Q ss_pred cchhhhHHHHHHhccccccccCcccCCCC-CCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCC
Q psy1565 11 TFAGTFHHAIISVGRSDRVTEGETKEGVT-EGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAG 89 (146)
Q Consensus 11 ~l~~~~i~~l~~~g~~~~~~~~~~~~~~~-~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G 89 (146)
.........|...|++++++...+.+..+ .....+++|+++|+.|...++. +.++++++||++..++|++|||||.+|
T Consensus 107 ~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~~~~~~~VlVHC~~G 185 (547)
T PRK12361 107 RLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQVRANKSVVVHCALG 185 (547)
T ss_pred CCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 34455667777888888888865443322 2335679999999999887765 469999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHc-CCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHhc
Q psy1565 90 ISRSATIVIAYIMKHM-GLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHL 141 (146)
Q Consensus 90 ~~RS~~~~~aylm~~~-~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~ 141 (146)
.|||++++++|||... ++++++|++.||++||.+.||+.|+++|.+|++..+
T Consensus 186 ~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~ 238 (547)
T PRK12361 186 RGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGK 238 (547)
T ss_pred CCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999764 899999999999999999999999999999987654
No 11
>KOG1720|consensus
Probab=99.86 E-value=1e-20 Score=136.67 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=104.8
Q ss_pred HHHHHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHH
Q psy1565 17 HHAIISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATI 96 (146)
Q Consensus 17 i~~l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~ 96 (146)
+..+-+..++.+++....-++...+...||.++++|+.|...|+... ..++++.++.+.+ |++|.|||.+|.||||++
T Consensus 87 ~~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~l 164 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEK-GGKIAVHCKAGLGRTGTL 164 (225)
T ss_pred HHHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHh-cCeEEEEeccCCCchhHH
Confidence 33333555666777777777777788899999999999999888664 8888888888888 999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHH
Q psy1565 97 VIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQ 138 (146)
Q Consensus 97 ~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~ 138 (146)
++||||+..|+++.||+..+|..||.+..+++|...+.++..
T Consensus 165 iAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 165 IACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887776
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.81 E-value=3.4e-19 Score=128.76 Aligned_cols=98 Identities=21% Similarity=0.178 Sum_probs=81.3
Q ss_pred CCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHc-CCCHHHHHHHH
Q psy1565 38 VTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHM-GLDLAQAHDLV 116 (146)
Q Consensus 38 ~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~-~~~~~~a~~~v 116 (146)
.......++.++++|+.|...|+.. .+.+++++|.+..++|++|+|||.+|+||||++++||||.++ ++..++++.++
T Consensus 65 ~~~~~~~~~~~~~~~~~D~~~p~~~-~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~ 143 (180)
T COG2453 65 VAIEENDGIQVLHLPILDGTVPDLE-DLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVK 143 (180)
T ss_pred cceeccCCceeeeeeecCCCCCcHH-HHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3446678999999999999999985 499999999999999999999999999999999999999995 67788888888
Q ss_pred HhHCCCCCCCHHHHHHHHHH
Q psy1565 117 KKVRPCIKPNPGFLRQLKEW 136 (146)
Q Consensus 117 r~~rp~~~p~~~~~~~L~~~ 136 (146)
+.+||.......+.....+.
T Consensus 144 ~~~r~~~v~~~~q~~~~~e~ 163 (180)
T COG2453 144 RRRRPGAVVTEIQHLFELEQ 163 (180)
T ss_pred HhcCCcccccHHHHHHHHHH
Confidence 88887644444444433333
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.71 E-value=1.1e-18 Score=123.06 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=61.7
Q ss_pred cchhhhHHHHHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCC
Q psy1565 11 TFAGTFHHAIISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGI 90 (146)
Q Consensus 11 ~l~~~~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~ 90 (146)
++++.|+..++.+-..++................|+.|+++|+.|...|++.. ..++++.+...+++|++|+|||++|.
T Consensus 66 ~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~-~~~i~~eL~~~L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 66 RLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA-AWQILEELAARLENGRKVLVHCRGGL 144 (168)
T ss_dssp HHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-HHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred HHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-HHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 35555555444444444433333322233466789999999999999888654 55678889999999999999999999
Q ss_pred chhHHHHHHHHHHHc-CCCHHHHH
Q psy1565 91 SRSATIVIAYIMKHM-GLDLAQAH 113 (146)
Q Consensus 91 ~RS~~~~~aylm~~~-~~~~~~a~ 113 (146)
||||++|+++|+... .+++++|+
T Consensus 145 GRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 145 GRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp SHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CHHHHHHHHHHHHHcCCCChhhcC
Confidence 999999999888765 68999885
No 14
>KOG2836|consensus
Probab=99.60 E-value=1.6e-14 Score=98.20 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=101.5
Q ss_pred chhhhHHHHHHhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHh--hCCCcEEEEcCCC
Q psy1565 12 FAGTFHHAIISVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCH--NDQSTVYVHCNAG 89 (146)
Q Consensus 12 l~~~~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~--~~g~~vlVHC~~G 89 (146)
.-..+|..|-..|++.+|+.++.+++..+.+..||+++.+|..|...|+- +..++..+++.... ..|..|.|||.+|
T Consensus 29 Tln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~-qvv~~w~~l~~~~f~e~p~~cvavhcvag 107 (173)
T KOG2836|consen 29 TLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPN-QVVDDWLSLVKTKFREEPGCCVAVHCVAG 107 (173)
T ss_pred hHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCch-HHHHHHHHHHHHHHhhCCCCeEEEEeecc
Confidence 34567888889999999999999999999999999999999999886652 23455555544443 4679999999999
Q ss_pred CchhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHH
Q psy1565 90 ISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQK 139 (146)
Q Consensus 90 ~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~ 139 (146)
.||++++++..|+. .|+..++|+.++|++| .--.|..++..|..|..+
T Consensus 108 lgrapvlvalalie-~gmkyedave~ir~kr-rga~n~kql~~lekyrpk 155 (173)
T KOG2836|consen 108 LGRAPVLVALALIE-AGMKYEDAVEMIRQKR-RGAINSKQLLYLEKYRPK 155 (173)
T ss_pred cCcchHHHHHHHHH-ccccHHHHHHHHHHHh-hccccHHHHHHHHHhCcc
Confidence 99999999776655 9999999999999999 556677788788777543
No 15
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.54 E-value=1.1e-13 Score=90.35 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=66.1
Q ss_pred EEEEEecCCCCCCccccHHHHHHHHHHHhh---CCCcEEEEcCCCCchhHHHHHHHHHHHc------CCCHHHHHHHHHh
Q psy1565 48 TEGKTIYDEPGYNLSKHFPDCFTYIDHCHN---DQSTVYVHCNAGISRSATIVIAYIMKHM------GLDLAQAHDLVKK 118 (146)
Q Consensus 48 ~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~---~g~~vlVHC~~G~~RS~~~~~aylm~~~------~~~~~~a~~~vr~ 118 (146)
|...+++|...|+..+.+.++++.++.... .+++|+|||.+|.||||+++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 333444455545444456666666666554 3689999999999999999999998864 2688999999999
Q ss_pred HCCCCCCCHHHHHHHHH
Q psy1565 119 VRPCIKPNPGFLRQLKE 135 (146)
Q Consensus 119 ~rp~~~p~~~~~~~L~~ 135 (146)
.||....+..+...+..
T Consensus 85 ~r~~~~~~~~q~~~~~~ 101 (105)
T smart00012 85 QRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhCCcHHHHHHHHH
Confidence 99999998877766543
No 16
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.54 E-value=1.1e-13 Score=90.35 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=66.1
Q ss_pred EEEEEecCCCCCCccccHHHHHHHHHHHhh---CCCcEEEEcCCCCchhHHHHHHHHHHHc------CCCHHHHHHHHHh
Q psy1565 48 TEGKTIYDEPGYNLSKHFPDCFTYIDHCHN---DQSTVYVHCNAGISRSATIVIAYIMKHM------GLDLAQAHDLVKK 118 (146)
Q Consensus 48 ~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~---~g~~vlVHC~~G~~RS~~~~~aylm~~~------~~~~~~a~~~vr~ 118 (146)
|...+++|...|+..+.+.++++.++.... .+++|+|||.+|.||||+++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 333444455545444456666666666554 3689999999999999999999998864 2688999999999
Q ss_pred HCCCCCCCHHHHHHHHH
Q psy1565 119 VRPCIKPNPGFLRQLKE 135 (146)
Q Consensus 119 ~rp~~~p~~~~~~~L~~ 135 (146)
.||....+..+...+..
T Consensus 85 ~r~~~~~~~~q~~~~~~ 101 (105)
T smart00404 85 QRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhCCcHHHHHHHHH
Confidence 99999998877766543
No 17
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.43 E-value=2.3e-12 Score=95.99 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhh--CCCcEEEEcCCCCchhHHHHHHHHHHHc-----CCCHHHHHHHHHhHCCCCCCCHHHHHHHHH
Q psy1565 65 FPDCFTYIDHCHN--DQSTVYVHCNAGISRSATIVIAYIMKHM-----GLDLAQAHDLVKKVRPCIKPNPGFLRQLKE 135 (146)
Q Consensus 65 ~~~~~~~i~~~~~--~g~~vlVHC~~G~~RS~~~~~aylm~~~-----~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~ 135 (146)
+.++++.++.... .+++|+|||.+|+||||++++++++... ..++.+++..+|++||.+..+..+...+.+
T Consensus 150 ~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 150 LLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred HHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHHH
Confidence 4455555554432 3689999999999999999998877654 699999999999999999999888776653
No 18
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.41 E-value=3.8e-12 Score=96.43 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=63.9
Q ss_pred EEEEEEecCCCCCCcccc---HHHHHHHHHHHhhC-CCcEEEEcCCCCchhHHHHHHHHHHH-----cCCCHHHHHHHHH
Q psy1565 47 VTEGKTIYDEPGYNLSKH---FPDCFTYIDHCHND-QSTVYVHCNAGISRSATIVIAYIMKH-----MGLDLAQAHDLVK 117 (146)
Q Consensus 47 ~~~~~p~~D~~~~~~~~~---~~~~~~~i~~~~~~-g~~vlVHC~~G~~RS~~~~~aylm~~-----~~~~~~~a~~~vr 117 (146)
...++...+|+....+.. +.++++.++..... +++|+|||.+|+||||++++++++.. ...++.+++..+|
T Consensus 157 ~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR 236 (258)
T smart00194 157 TVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELR 236 (258)
T ss_pred EEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344444445553333323 44444444444332 68999999999999999999887754 2689999999999
Q ss_pred hHCCCCCCCHHHHHHHHH
Q psy1565 118 KVRPCIKPNPGFLRQLKE 135 (146)
Q Consensus 118 ~~rp~~~p~~~~~~~L~~ 135 (146)
++||.+..+..+...+.+
T Consensus 237 ~~R~~~v~~~~Qy~f~~~ 254 (258)
T smart00194 237 SQRPGMVQTEEQYIFLYR 254 (258)
T ss_pred hccccccCCHHHHHHHHH
Confidence 999999999888877653
No 19
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.36 E-value=6.1e-12 Score=102.00 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=67.9
Q ss_pred cCCCCCCccccHHHHHHHHHHHhhCC---------CcEEEEcCCCCchhHHHHHHHHHHHc-CCCHHHHHHHHHhHCCC-
Q psy1565 54 YDEPGYNLSKHFPDCFTYIDHCHNDQ---------STVYVHCNAGISRSATIVIAYIMKHM-GLDLAQAHDLVKKVRPC- 122 (146)
Q Consensus 54 ~D~~~~~~~~~~~~~~~~i~~~~~~g---------~~vlVHC~~G~~RS~~~~~aylm~~~-~~~~~~a~~~vr~~rp~- 122 (146)
+|...|+-...+..+++.++...+.+ ...+|||++|+||||++|++++|... ..++++.+..+|..|+.
T Consensus 432 PDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~ 511 (535)
T PRK15375 432 PDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNR 511 (535)
T ss_pred CCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCcc
Confidence 45444443334666666666543221 23479999999999999999998755 58899999999999998
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q psy1565 123 IKPNPGFLRQLKEWEQKHL 141 (146)
Q Consensus 123 ~~p~~~~~~~L~~~~~~l~ 141 (146)
|..+..|...|.+.+..++
T Consensus 512 MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 512 MLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 9999999999999988875
No 20
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.29 E-value=8.3e-11 Score=91.37 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHc-----CCCHHHHHHHHHhHCCCCCCCHHHHHHH
Q psy1565 79 QSTVYVHCNAGISRSATIVIAYIMKHM-----GLDLAQAHDLVKKVRPCIKPNPGFLRQL 133 (146)
Q Consensus 79 g~~vlVHC~~G~~RS~~~~~aylm~~~-----~~~~~~a~~~vr~~rp~~~p~~~~~~~L 133 (146)
.+||+|||++|+||||++|+...+..+ ..+..+++..+|++|+.+..+..+...+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFC 288 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHHH
Confidence 379999999999999999977666533 5789999999999999999988776643
No 21
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.29 E-value=5.8e-11 Score=92.01 Aligned_cols=88 Identities=15% Similarity=0.063 Sum_probs=61.2
Q ss_pred EEEEEEecCCCCCCccccHHHHHHHHHHHh------------hCCCcEEEEcCCCCchhHHHHHHHHHHHc-----CCCH
Q psy1565 47 VTEGKTIYDEPGYNLSKHFPDCFTYIDHCH------------NDQSTVYVHCNAGISRSATIVIAYIMKHM-----GLDL 109 (146)
Q Consensus 47 ~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~------------~~g~~vlVHC~~G~~RS~~~~~aylm~~~-----~~~~ 109 (146)
...++...+|+....+..-..+++|+.... ...+||+|||++|+||||++|+...+..+ .++.
T Consensus 177 ~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi 256 (298)
T PHA02740 177 KISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSI 256 (298)
T ss_pred EEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccH
Confidence 344555555554444333334444443221 12479999999999999999977666533 5899
Q ss_pred HHHHHHHHhHCCCCCCCHHHHHHHH
Q psy1565 110 AQAHDLVKKVRPCIKPNPGFLRQLK 134 (146)
Q Consensus 110 ~~a~~~vr~~rp~~~p~~~~~~~L~ 134 (146)
.+++..+|++|+.+..+..+.....
T Consensus 257 ~~~V~~lR~qR~~~Vqt~~QY~F~y 281 (298)
T PHA02740 257 ANALKKVRQKKYGCMNCLDDYVFCY 281 (298)
T ss_pred HHHHHHHHhhCccccCCHHHHHHHH
Confidence 9999999999999999987776544
No 22
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.27 E-value=5e-12 Score=90.06 Aligned_cols=130 Identities=11% Similarity=0.030 Sum_probs=73.5
Q ss_pred cccchhhhHHHHHHhccccccccCcccCC---CCCCCCCCeEEEEEEecCCCCCC---ccccHHHHHHHHHHHhhCCCcE
Q psy1565 9 LPTFAGTFHHAIISVGRSDRVTEGETKEG---VTEGKTKEGVTEGKTIYDEPGYN---LSKHFPDCFTYIDHCHNDQSTV 82 (146)
Q Consensus 9 ~~~l~~~~i~~l~~~g~~~~~~~~~~~~~---~~~~~~~~i~~~~~p~~D~~~~~---~~~~~~~~~~~i~~~~~~g~~v 82 (146)
-.+....+...|-.+|...+++...+... .......+|++.++++.....+. ..+.+.++++.|... ...||
T Consensus 17 S~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~--~n~Pv 94 (164)
T PF03162_consen 17 SAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP--RNYPV 94 (164)
T ss_dssp ESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G--GG-SE
T ss_pred CCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC--CCCCE
Confidence 34456778888889999999888765322 11245789999999997765421 222355555555443 35799
Q ss_pred EEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHhcC
Q psy1565 83 YVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLK 142 (146)
Q Consensus 83 lVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~~ 142 (146)
||||..|..|||+++++|- +.+||+..++++..+.-- ....+..-.+.++.|+..+..
T Consensus 95 LiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~-~~~~~~~~~~fIe~f~~~~~~ 152 (164)
T PF03162_consen 95 LIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFA-GPKIRYLDEQFIELFDVELVV 152 (164)
T ss_dssp EEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHH-GGG--HHHHHHHHT-------
T ss_pred EEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhc-CCCCcHHHHHHHHhcCcceec
Confidence 9999999999999999988 669999999999999854 224455666677777766554
No 23
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.26 E-value=2.1e-10 Score=79.21 Aligned_cols=114 Identities=9% Similarity=0.048 Sum_probs=81.9
Q ss_pred CCCCCCcccchhhhHHHHHHhccccccccCcccCC-CCCC--------CCCCeEEEEEEecCCCCCCccccHHHHHHHHH
Q psy1565 3 AHPAWGLPTFAGTFHHAIISVGRSDRVTEGETKEG-VTEG--------KTKEGVTEGKTIYDEPGYNLSKHFPDCFTYID 73 (146)
Q Consensus 3 ~~~~w~~~~l~~~~i~~l~~~g~~~~~~~~~~~~~-~~~~--------~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~ 73 (146)
..+.|-.+++..+.+..|..+|+..+++.....+. ..+. ...+++|+++|+..... +- .....+.++++
T Consensus 6 ~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~-~~v~~f~~~~~ 83 (135)
T TIGR01244 6 TEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TP-DDVETFRAAIG 83 (135)
T ss_pred CCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CH-HHHHHHHHHHH
Confidence 45667788899999999999999999998755432 1221 23699999999886432 11 11333333333
Q ss_pred HHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCC
Q psy1565 74 HCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCI 123 (146)
Q Consensus 74 ~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~ 123 (146)
...++||+||+.|. ||+++.+.++.. .|++.+++++..+..--..
T Consensus 84 ---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 84 ---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred ---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCc
Confidence 34689999999999 999988665544 8899999999998865443
No 24
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.23 E-value=1.2e-10 Score=91.19 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=62.3
Q ss_pred EEEEEEecCCCCCCccccHHHHHHHHHHHhh-----------C---CCcEEEEcCCCCchhHHHHHHHHHHHc-----CC
Q psy1565 47 VTEGKTIYDEPGYNLSKHFPDCFTYIDHCHN-----------D---QSTVYVHCNAGISRSATIVIAYIMKHM-----GL 107 (146)
Q Consensus 47 ~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~-----------~---g~~vlVHC~~G~~RS~~~~~aylm~~~-----~~ 107 (146)
...++...+|+...++.....+++|+....+ . .+||+|||++|+||||++|+...+..+ .+
T Consensus 201 ~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~v 280 (323)
T PHA02746 201 EIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEV 280 (323)
T ss_pred EEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCC
Confidence 4455555566544444434444444443321 1 279999999999999999976655432 58
Q ss_pred CHHHHHHHHHhHCCCCCCCHHHHHHHHH
Q psy1565 108 DLAQAHDLVKKVRPCIKPNPGFLRQLKE 135 (146)
Q Consensus 108 ~~~~a~~~vr~~rp~~~p~~~~~~~L~~ 135 (146)
+..+++..+|++|+.+..+..+...+.+
T Consensus 281 dv~~~V~~lR~qR~~~Vqt~~QY~F~y~ 308 (323)
T PHA02746 281 CLGEIVLKIRKQRHSSVFLPEQYAFCYK 308 (323)
T ss_pred CHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 9999999999999999999888776553
No 25
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.18 E-value=1.8e-10 Score=89.86 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=46.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHc-----CCCHHHHHHHHHhHCCCCCCCHHHHHHH
Q psy1565 80 STVYVHCNAGISRSATIVIAYIMKHM-----GLDLAQAHDLVKKVRPCIKPNPGFLRQL 133 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~~aylm~~~-----~~~~~~a~~~vr~~rp~~~p~~~~~~~L 133 (146)
+||+|||++|+||||++|+...+..+ ..+..+++..+|++|+.+..+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 79999999999999999977655433 5889999999999999999998777666
No 26
>PHA02738 hypothetical protein; Provisional
Probab=99.16 E-value=3.9e-10 Score=88.23 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHc-----CCCHHHHHHHHHhHCCCCCCCHHHHHHHH
Q psy1565 79 QSTVYVHCNAGISRSATIVIAYIMKHM-----GLDLAQAHDLVKKVRPCIKPNPGFLRQLK 134 (146)
Q Consensus 79 g~~vlVHC~~G~~RS~~~~~aylm~~~-----~~~~~~a~~~vr~~rp~~~p~~~~~~~L~ 134 (146)
.+||+|||.+|+||||++|+...+..+ .++..+++..+|++|+.+..+..+...+.
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y 287 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCY 287 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHH
Confidence 369999999999999999976655433 58899999999999999999988776443
No 27
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.14 E-value=3.7e-10 Score=83.58 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=60.9
Q ss_pred ecCCCCCCccccHHHHHHHHHHHhh----CCCcEEEEcCCCCchhHHHHHHHHHHHc-----CCCHHHHHHHHHhHCCCC
Q psy1565 53 IYDEPGYNLSKHFPDCFTYIDHCHN----DQSTVYVHCNAGISRSATIVIAYIMKHM-----GLDLAQAHDLVKKVRPCI 123 (146)
Q Consensus 53 ~~D~~~~~~~~~~~~~~~~i~~~~~----~g~~vlVHC~~G~~RS~~~~~aylm~~~-----~~~~~~a~~~vr~~rp~~ 123 (146)
..+|+....+.....++++++.... ..++|+|||.+|.||||+++++.++... ..+..+++..+|++||.+
T Consensus 140 ~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~ 219 (235)
T PF00102_consen 140 YTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGA 219 (235)
T ss_dssp EESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTS
T ss_pred eeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCc
Confidence 3344433333334444455554443 3499999999999999999988777644 489999999999999999
Q ss_pred CCCHHHHHHHHH
Q psy1565 124 KPNPGFLRQLKE 135 (146)
Q Consensus 124 ~p~~~~~~~L~~ 135 (146)
..+..+...+..
T Consensus 220 i~~~~qy~f~~~ 231 (235)
T PF00102_consen 220 IQSPEQYRFCYM 231 (235)
T ss_dssp SSSHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 999888776654
No 28
>KOG0792|consensus
Probab=99.10 E-value=3.3e-10 Score=97.63 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=62.5
Q ss_pred CCCCCCccccHHHHHHHHHHHhhC-CCcEEEEcCCCCchhHHHHHH----HHHHHc-CCCHHHHHHHHHhHCCCCCCCHH
Q psy1565 55 DEPGYNLSKHFPDCFTYIDHCHND-QSTVYVHCNAGISRSATIVIA----YIMKHM-GLDLAQAHDLVKKVRPCIKPNPG 128 (146)
Q Consensus 55 D~~~~~~~~~~~~~~~~i~~~~~~-g~~vlVHC~~G~~RS~~~~~a----ylm~~~-~~~~~~a~~~vr~~rp~~~p~~~ 128 (146)
|...|+-.+.|.++++.|+..... +-||+|||.+|+||||+++++ ||+... .+.+.+.++.+|.+|-.+.++..
T Consensus 1038 DHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~~ 1117 (1144)
T KOG0792|consen 1038 DHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTLS 1117 (1144)
T ss_pred cCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccchH
Confidence 344455555677777777777766 669999999999999999844 444433 58899999999999988999999
Q ss_pred HHHHHHH
Q psy1565 129 FLRQLKE 135 (146)
Q Consensus 129 ~~~~L~~ 135 (146)
+..++.+
T Consensus 1118 QYkFVye 1124 (1144)
T KOG0792|consen 1118 QYKFVYE 1124 (1144)
T ss_pred HhhHHHH
Confidence 8876553
No 29
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.96 E-value=6.8e-10 Score=83.45 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHh---hCCCcEEEEcCCCCchhHHHHHHHHHHHc-CCC-------------HHHHHHHHHhHCCCCCCCH
Q psy1565 65 FPDCFTYIDHCH---NDQSTVYVHCNAGISRSATIVIAYIMKHM-GLD-------------LAQAHDLVKKVRPCIKPNP 127 (146)
Q Consensus 65 ~~~~~~~i~~~~---~~g~~vlVHC~~G~~RS~~~~~aylm~~~-~~~-------------~~~a~~~vr~~rp~~~p~~ 127 (146)
+....++++... -++++++|||.+|+||||+|++..-+... .-+ ..+.+..+|++|-.+..|.
T Consensus 201 i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~ 280 (302)
T COG5599 201 IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNK 280 (302)
T ss_pred HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 444455555554 25699999999999999999976655543 111 3456889999998899999
Q ss_pred HHHHHHHHHHHHhc
Q psy1565 128 GFLRQLKEWEQKHL 141 (146)
Q Consensus 128 ~~~~~L~~~~~~l~ 141 (146)
.|...|.+.-.+++
T Consensus 281 ~Qf~flY~~~~~l~ 294 (302)
T COG5599 281 TQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887766666
No 30
>PLN02727 NAD kinase
Probab=98.95 E-value=3.7e-09 Score=91.02 Aligned_cols=101 Identities=8% Similarity=0.027 Sum_probs=77.6
Q ss_pred CCCCcccchhhhHHHHHHhccccccccCcccCCCCCC--------CCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHh
Q psy1565 5 PAWGLPTFAGTFHHAIISVGRSDRVTEGETKEGVTEG--------KTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCH 76 (146)
Q Consensus 5 ~~w~~~~l~~~~i~~l~~~g~~~~~~~~~~~~~~~~~--------~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~ 76 (146)
..|--.+...+.+..|...|+..+++.....+...++ ...|++|+++|+.+...+... .+.++.+++++
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~E-qVe~fa~~l~~-- 338 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAE-QVEKFASLVSD-- 338 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHH-HHHHHHHHHHh--
Confidence 3477778888889889999999999987666532322 237899999999876655543 36666666644
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGLD 108 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~ 108 (146)
...+|||+||..|.+|+|+++++|+...-+..
T Consensus 339 slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 339 SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 34689999999999999999999999877654
No 31
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.95 E-value=4.3e-09 Score=74.79 Aligned_cols=106 Identities=11% Similarity=0.144 Sum_probs=55.5
Q ss_pred cccchhhhHHHHHHhccccccccCcccCC--CCCCCCCCeEEEEEEecCCCCCC---ccc--------------------
Q psy1565 9 LPTFAGTFHHAIISVGRSDRVTEGETKEG--VTEGKTKEGVTEGKTIYDEPGYN---LSK-------------------- 63 (146)
Q Consensus 9 ~~~l~~~~i~~l~~~g~~~~~~~~~~~~~--~~~~~~~~i~~~~~p~~D~~~~~---~~~-------------------- 63 (146)
+..+..++...|..+|++.+++.....|- .+.....++++.++|+.+..... +.+
T Consensus 27 l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 106 (164)
T PF13350_consen 27 LSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREML 106 (164)
T ss_dssp -TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGG
T ss_pred cCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHH
Confidence 34477889999999999999988766642 23334569999999997755331 110
Q ss_pred -c-HHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q psy1565 64 -H-FPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDL 115 (146)
Q Consensus 64 -~-~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~ 115 (146)
. -+.+.++++......++||+||.+|..|||.+++. ++...|++.++....
T Consensus 107 ~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~al-ll~~lGV~~~~I~~D 159 (164)
T PF13350_consen 107 ESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAAL-LLSLLGVPDEDIIAD 159 (164)
T ss_dssp GSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHH-HHHHTT--HHHHHHH
T ss_pred HhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHH-HHHHcCCCHHHHHHH
Confidence 0 11222222223334479999999999999999966 455589998876543
No 32
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.94 E-value=2.1e-09 Score=75.41 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHH
Q psy1565 43 TKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMK 103 (146)
Q Consensus 43 ~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~ 103 (146)
..++.|+++|+.|...|.-. .|++++++++.. .++..+.+||.+|.|||.++.+.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~-~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPE-DIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS---HH-HHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHH-HHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999866655 599999999998 778999999999999999999888775
No 33
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.93 E-value=4.3e-09 Score=73.15 Aligned_cols=69 Identities=22% Similarity=0.431 Sum_probs=58.4
Q ss_pred cccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHH-HHHHHcCCCHHHHHHHHHhHCCCCCCCHHHHH
Q psy1565 62 SKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIA-YIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLR 131 (146)
Q Consensus 62 ~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~a-ylm~~~~~~~~~a~~~vr~~rp~~~p~~~~~~ 131 (146)
..+...+++|+++.-+. .+++|||.+|+|||.+.++. -+.....++..+..+.++..+|...||+..+.
T Consensus 77 e~Hv~~i~DF~~~wp~~-apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 77 EAHVRAIIDFADEWPRF-APLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred HHHHHHHHHHHhcCccc-cceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 34588899999998765 89999999999999998833 34555689999999999999999999988764
No 34
>KOG0791|consensus
Probab=98.72 E-value=1.4e-07 Score=73.82 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=67.5
Q ss_pred EEEEEEecCCCCCCccccHHHHHHHHHHHhhC-CCcEEEEcCCCCchhHHHHHHHHHHHc-----CCCHHHHHHHHHhHC
Q psy1565 47 VTEGKTIYDEPGYNLSKHFPDCFTYIDHCHND-QSTVYVHCNAGISRSATIVIAYIMKHM-----GLDLAQAHDLVKKVR 120 (146)
Q Consensus 47 ~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~-g~~vlVHC~~G~~RS~~~~~aylm~~~-----~~~~~~a~~~vr~~r 120 (146)
+++...++|.+.+.-...+.++.....+.... .++++|||.+|+||||++++.--+.++ -.+....+..+|..|
T Consensus 254 ~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R 333 (374)
T KOG0791|consen 254 HFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSAR 333 (374)
T ss_pred EEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcc
Confidence 33444445777565455566666666666643 489999999999999999977665544 256778899999999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy1565 121 PCIKPNPGFLRQLKEWEQ 138 (146)
Q Consensus 121 p~~~p~~~~~~~L~~~~~ 138 (146)
+.+.++..|.-.|.+--.
T Consensus 334 ~~mVqte~Qyvfl~~c~~ 351 (374)
T KOG0791|consen 334 MLMVQTEDQYVFLHQCVL 351 (374)
T ss_pred ccccchHHHHHHHHHHHH
Confidence 999999988887775433
No 35
>KOG0790|consensus
Probab=98.68 E-value=3e-08 Score=79.39 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=57.8
Q ss_pred EEEEEEecCCCCCCccccHHHHHHHHHH---HhhCCCcEEEEcCCCCchhHHHHHHHHHHHc--------CCCHHHHHHH
Q psy1565 47 VTEGKTIYDEPGYNLSKHFPDCFTYIDH---CHNDQSTVYVHCNAGISRSATIVIAYIMKHM--------GLDLAQAHDL 115 (146)
Q Consensus 47 ~~~~~p~~D~~~~~~~~~~~~~~~~i~~---~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~--------~~~~~~a~~~ 115 (146)
+|+.+-++|...|.-+.-...+++-++. .+..-++|.|||++|+||||+++..-++..+ .++....+.+
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqm 495 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQM 495 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHH
Confidence 3444444566644433323333333332 2223479999999999999998844433322 4788899999
Q ss_pred HHhHCCCCCCCHHHHHHHH
Q psy1565 116 VKKVRPCIKPNPGFLRQLK 134 (146)
Q Consensus 116 vr~~rp~~~p~~~~~~~L~ 134 (146)
||.+|..+..+..+.+.+.
T Consensus 496 VRsqRSGmVQTEaQYkFiY 514 (600)
T KOG0790|consen 496 VRSQRSGMVQTEAQYKFIY 514 (600)
T ss_pred HHHHhcchhhhHHhHHHHH
Confidence 9999999988888777554
No 36
>KOG2283|consensus
Probab=98.58 E-value=1.2e-07 Score=76.81 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=72.1
Q ss_pred EEEEEEecCCCCCCccccHHHHHHHHHHHhhCC--CcEEEEcCCCCchhHHHHHHHHHHHcC-CCHHHHHHHHHhHC---
Q psy1565 47 VTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQ--STVYVHCNAGISRSATIVIAYIMKHMG-LDLAQAHDLVKKVR--- 120 (146)
Q Consensus 47 ~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g--~~vlVHC~~G~~RS~~~~~aylm~~~~-~~~~~a~~~vr~~r--- 120 (146)
+...+++.|...|++.. +..+++-++..+... .-+.|||.+|.+|||++++|||+.... -++++|+.+.-.+|
T Consensus 74 ~V~~~~~~Dh~~P~L~~-l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~ 152 (434)
T KOG2283|consen 74 RVARFGFDDHNPPPLEL-LCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDE 152 (434)
T ss_pred ceeecCCCCCCCCcHHH-HHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccc
Confidence 45668999998888774 777888888888653 688999999999999999999999775 44999999999998
Q ss_pred C--CCCCCHHHHHHHHHHHHH
Q psy1565 121 P--CIKPNPGFLRQLKEWEQK 139 (146)
Q Consensus 121 p--~~~p~~~~~~~L~~~~~~ 139 (146)
. .....+.+.+=+.-|+..
T Consensus 153 ~~~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 153 GKSKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred cccCCccCchhhHHHHHHHHH
Confidence 3 234445666666655553
No 37
>KOG0793|consensus
Probab=98.50 E-value=2.4e-07 Score=77.69 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=65.0
Q ss_pred CCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhC-CCcEEEEcCCCCchhHHHHHHHHHHHc------CCCHHHHHHHH
Q psy1565 44 KEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHND-QSTVYVHCNAGISRSATIVIAYIMKHM------GLDLAQAHDLV 116 (146)
Q Consensus 44 ~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~-g~~vlVHC~~G~~RS~~~~~aylm~~~------~~~~~~a~~~v 116 (146)
..|+|+.|| +.+.|.....+.++-+-++++.+. ..+|+|||++|.||||+.|+.-++..+ .++....+.++
T Consensus 893 TQFHfLSWp--~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHl 970 (1004)
T KOG0793|consen 893 TQFHFLSWP--DEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHL 970 (1004)
T ss_pred eeeeeeccc--ccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHH
Confidence 455555555 555566566677777777777753 489999999999999998755544432 47788889999
Q ss_pred HhHCCCCCCCHHHHHHH
Q psy1565 117 KKVRPCIKPNPGFLRQL 133 (146)
Q Consensus 117 r~~rp~~~p~~~~~~~L 133 (146)
|.+||.+.-+..+.+..
T Consensus 971 RDQR~GmVaTkdQFef~ 987 (1004)
T KOG0793|consen 971 RDQRPGMVATKDQFEFA 987 (1004)
T ss_pred hhcCCcceeehhhhHHH
Confidence 99999988887776644
No 38
>KOG2386|consensus
Probab=98.43 E-value=3.1e-07 Score=73.07 Aligned_cols=104 Identities=16% Similarity=0.199 Sum_probs=80.9
Q ss_pred CCCCCCCCeEEEEEEecCCC-CCC--ccccH-HHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHH
Q psy1565 38 VTEGKTKEGVTEGKTIYDEP-GYN--LSKHF-PDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAH 113 (146)
Q Consensus 38 ~~~~~~~~i~~~~~p~~D~~-~~~--~~~~~-~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~ 113 (146)
.+.....++.|+.+...... .|+ ..+.| ..+-.|.+...-.++-|+|||.+|.+|+|-++++|||...+++..+|+
T Consensus 79 ~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~ai 158 (393)
T KOG2386|consen 79 KPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAI 158 (393)
T ss_pred cccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHH
Confidence 34456788889988876655 222 22223 234455555556789999999999999999999999999999999999
Q ss_pred HHHHhHCCCCCCCHHHHHHHHHHHHHhc
Q psy1565 114 DLVKKVRPCIKPNPGFLRQLKEWEQKHL 141 (146)
Q Consensus 114 ~~vr~~rp~~~p~~~~~~~L~~~~~~l~ 141 (146)
+.+...||...-.+.+...|...+....
T Consensus 159 k~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 159 KRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred HHHHHhCCCccCchHHHHHHhhcccccc
Confidence 9999999998888888888887666544
No 39
>KOG0789|consensus
Probab=98.43 E-value=2.3e-06 Score=68.66 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=54.5
Q ss_pred EEEEecCCCCCCccccHHHHHHHHH----HHhhCCCcEEEEcCCCCchhHHHHHHH-HHHH--c---CCCHHHHHHHHHh
Q psy1565 49 EGKTIYDEPGYNLSKHFPDCFTYID----HCHNDQSTVYVHCNAGISRSATIVIAY-IMKH--M---GLDLAQAHDLVKK 118 (146)
Q Consensus 49 ~~~p~~D~~~~~~~~~~~~~~~~i~----~~~~~g~~vlVHC~~G~~RS~~~~~ay-lm~~--~---~~~~~~a~~~vr~ 118 (146)
.++-..+|+....++....++.++. ......+++.|||.+|+||||++++.. .+.. . ..+..+.+..+|.
T Consensus 265 ~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~ 344 (415)
T KOG0789|consen 265 VHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRY 344 (415)
T ss_pred EEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 3333334432233333455555654 222245899999999999999999654 2222 2 2447788889999
Q ss_pred HCCCCCCCHHHHHHHH
Q psy1565 119 VRPCIKPNPGFLRQLK 134 (146)
Q Consensus 119 ~rp~~~p~~~~~~~L~ 134 (146)
+|+.+..+..|...+.
T Consensus 345 qR~~~vqt~~Qy~f~~ 360 (415)
T KOG0789|consen 345 QRPGAVQSPLQYLFIY 360 (415)
T ss_pred HhhhcccchhHHHHHH
Confidence 9998877777665433
No 40
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.43 E-value=5.9e-07 Score=59.93 Aligned_cols=87 Identities=10% Similarity=0.009 Sum_probs=46.3
Q ss_pred CCCcccchhhhHHHHHHhccccccccCcccCC--CC-------CCCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHh
Q psy1565 6 AWGLPTFAGTFHHAIISVGRSDRVTEGETKEG--VT-------EGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCH 76 (146)
Q Consensus 6 ~w~~~~l~~~~i~~l~~~g~~~~~~~~~~~~~--~~-------~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~ 76 (146)
.|--+++..+.+..|...|...+++..-..+. .+ ..+..|+.|.++|+.... .+ -..+..|.+...
T Consensus 9 ~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~-~~----~~~v~~f~~~l~ 83 (110)
T PF04273_consen 9 LSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA-IT----EEDVEAFADALE 83 (110)
T ss_dssp EEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHHHHHHHHH
T ss_pred eEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC-CC----HHHHHHHHHHHH
Confidence 34455677777888888888888777533322 11 133689999999998643 22 233333433333
Q ss_pred hCCCcEEEEcCCCCchhHHHHH
Q psy1565 77 NDQSTVYVHCNAGISRSATIVI 98 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~ 98 (146)
+..+|||+||+.|. ||+++.+
T Consensus 84 ~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 84 SLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp TTTTSEEEE-SCSH-HHHHHHH
T ss_pred hCCCCEEEECCCCh-hHHHHHH
Confidence 45689999999998 8877653
No 41
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.28 E-value=4.7e-06 Score=63.17 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhCC-CcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCCCCCH
Q psy1565 65 FPDCFTYIDHCHNDQ-STVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNP 127 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g-~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~~p~~ 127 (146)
.+.+.+++.-...++ ++||+||.+|..|||.+++.|+....+.....+-+++.--++......
T Consensus 121 ~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 121 AERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 344555555555555 999999999999999999999999777777677777777665554444
No 42
>KOG4228|consensus
Probab=98.27 E-value=1.4e-06 Score=76.23 Aligned_cols=67 Identities=13% Similarity=0.246 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhCC----CcEEEEcCCCCchhHHHHHHHHHHHc-----CCCHHHHHHHHHhHCCCCCCCHHHHHH
Q psy1565 66 PDCFTYIDHCHNDQ----STVYVHCNAGISRSATIVIAYIMKHM-----GLDLAQAHDLVKKVRPCIKPNPGFLRQ 132 (146)
Q Consensus 66 ~~~~~~i~~~~~~g----~~vlVHC~~G~~RS~~~~~aylm~~~-----~~~~~~a~~~vr~~rp~~~p~~~~~~~ 132 (146)
-..+.|++....-. |+++|||.+|+||||++++.-.|... ..+...-+..+|.+|+.+..+..+.-.
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiF 788 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIF 788 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHH
Confidence 34455666655433 99999999999999998855555433 577888899999999988887666543
No 43
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.27 E-value=5.8e-06 Score=67.41 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=77.6
Q ss_pred CCCCCeEEEEEEecCCC--CCCccccHHHHHHHHHHHhhC--CCcEEEEcCCCCchhHHHHHHHHHHHcC--CCHH----
Q psy1565 41 GKTKEGVTEGKTIYDEP--GYNLSKHFPDCFTYIDHCHND--QSTVYVHCNAGISRSATIVIAYIMKHMG--LDLA---- 110 (146)
Q Consensus 41 ~~~~~i~~~~~p~~D~~--~~~~~~~~~~~~~~i~~~~~~--g~~vlVHC~~G~~RS~~~~~aylm~~~~--~~~~---- 110 (146)
.......++++|+..+. ...+...+++++.|+...+.+ +.+|+|+|..|...|+.++++.|+.... +.+.
T Consensus 334 ~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~ 413 (451)
T PF04179_consen 334 SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFE 413 (451)
T ss_pred ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccc
Confidence 34567778889987655 345777799999999999988 8999999999999999999998888663 2221
Q ss_pred ----------HHHHHHHhHCCCCCCCHHHHHHHHHH
Q psy1565 111 ----------QAHDLVKKVRPCIKPNPGFLRQLKEW 136 (146)
Q Consensus 111 ----------~a~~~vr~~rp~~~p~~~~~~~L~~~ 136 (146)
+-+..+.+.+|++.|++..++++..|
T Consensus 414 ~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 414 RPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 23777888899999999999998876
No 44
>KOG1572|consensus
Probab=98.25 E-value=7.7e-06 Score=60.89 Aligned_cols=106 Identities=10% Similarity=0.023 Sum_probs=73.0
Q ss_pred chhhhHHHHHHhccccccccCccc---CCCCCCCCCCeEEEEEEecCCC----CCC---ccccHHHHHHHHHHHhhCCCc
Q psy1565 12 FAGTFHHAIISVGRSDRVTEGETK---EGVTEGKTKEGVTEGKTIYDEP----GYN---LSKHFPDCFTYIDHCHNDQST 81 (146)
Q Consensus 12 l~~~~i~~l~~~g~~~~~~~~~~~---~~~~~~~~~~i~~~~~p~~D~~----~~~---~~~~~~~~~~~i~~~~~~g~~ 81 (146)
.+..+.+.|..++...++....+. +....+++.+|.+.+|.+.... .|. ..+.+..++.++- ...+-+
T Consensus 73 P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~ll--d~~N~P 150 (249)
T KOG1572|consen 73 PRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLL--DKRNYP 150 (249)
T ss_pred CCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHh--cccCCc
Confidence 455667777777777776666553 2233577899999999996654 111 2222344444422 245689
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHC
Q psy1565 82 VYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 82 vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~r 120 (146)
+||||..|..|+|+++.+.- +.++|+....+...+..-
T Consensus 151 ~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 151 ILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFA 188 (249)
T ss_pred eEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhc
Confidence 99999999999999997754 667899998887777654
No 45
>KOG4228|consensus
Probab=98.13 E-value=8.1e-06 Score=71.60 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=61.2
Q ss_pred eEEEEEEecCCCCCCccc----cHHHHHHHHHHHhhC--CCcEEEEcCCCCchhHHHHHHHHHHHc-----CCCHHHHHH
Q psy1565 46 GVTEGKTIYDEPGYNLSK----HFPDCFTYIDHCHND--QSTVYVHCNAGISRSATIVIAYIMKHM-----GLDLAQAHD 114 (146)
Q Consensus 46 i~~~~~p~~D~~~~~~~~----~~~~~~~~i~~~~~~--g~~vlVHC~~G~~RS~~~~~aylm~~~-----~~~~~~a~~ 114 (146)
..+..+...+|+.....+ .+..+.+..+...+. .+++.|||.+|.||||++|++-++..+ -++..++++
T Consensus 979 r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk 1058 (1087)
T KOG4228|consen 979 RTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVK 1058 (1087)
T ss_pred eEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhh
Confidence 344445555555322222 244444444443332 489999999999999999955444422 488999999
Q ss_pred HHHhHCCCCCCCHHHHHHHHHH
Q psy1565 115 LVKKVRPCIKPNPGFLRQLKEW 136 (146)
Q Consensus 115 ~vr~~rp~~~p~~~~~~~L~~~ 136 (146)
-+|..||.+.-...+.+.+.+-
T Consensus 1059 ~Lr~~rp~mv~t~~QY~fcYdv 1080 (1087)
T KOG4228|consen 1059 TLRFQRPGMVDTSDQYQFCYDV 1080 (1087)
T ss_pred hhhhcCccccCcHHHHHHHHHH
Confidence 9999999999888877766543
No 46
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.00081 Score=45.24 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=45.0
Q ss_pred CCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy1565 41 GKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKK 118 (146)
Q Consensus 41 ~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~ 118 (146)
....|+.|.++|+....... .++-.|.+..-+.++|||.||+.|. ||.++-..-- ...||+.++...+=+.
T Consensus 54 a~~aGl~y~~iPV~~~~iT~-----~dV~~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a 124 (130)
T COG3453 54 AEAAGLTYTHIPVTGGGITE-----ADVEAFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQA 124 (130)
T ss_pred HHhcCCceEEeecCCCCCCH-----HHHHHHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHh
Confidence 34578999999987654211 1222333333356799999999997 7766443222 4458998887665443
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.06 E-value=0.0016 Score=45.31 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=41.9
Q ss_pred cCCCCCCccccHHHHHHHHHHHhhC---CCcEEEEcCCCCc--h--hHHHHHHHHHHHcCCCHHHHHHHHHhHCC
Q psy1565 54 YDEPGYNLSKHFPDCFTYIDHCHND---QSTVYVHCNAGIS--R--SATIVIAYIMKHMGLDLAQAHDLVKKVRP 121 (146)
Q Consensus 54 ~D~~~~~~~~~~~~~~~~i~~~~~~---g~~vlVHC~~G~~--R--S~~~~~aylm~~~~~~~~~a~~~vr~~rp 121 (146)
.|+++.++.. +-+.+..+++.++. .++.+|||...-. | ++.++++|+|..+++++++|++.+...-|
T Consensus 39 ~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 5666677664 66667777777765 5888889877655 3 45577999999999999999999988754
No 48
>KOG4471|consensus
Probab=96.96 E-value=0.0014 Score=54.67 Aligned_cols=39 Identities=26% Similarity=0.561 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHH-HHHHHH
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGISRSATIV-IAYIMK 103 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~-~aylm~ 103 (146)
+..++..++.....+.+|||||..|..||+-++ +|.||.
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 445566666666778999999999999999877 454444
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=94.93 E-value=0.066 Score=42.71 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=17.2
Q ss_pred hCCCcEEEEcCCCCchhHHHH
Q psy1565 77 NDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~ 97 (146)
..|..|+|||..|.+||+.++
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 478999999999999998876
No 50
>KOG1089|consensus
Probab=94.79 E-value=0.063 Score=45.11 Aligned_cols=31 Identities=26% Similarity=0.589 Sum_probs=23.8
Q ss_pred HHHHHHHHHhh-CCCcEEEEcCCCCchhHHHH
Q psy1565 67 DCFTYIDHCHN-DQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 67 ~~~~~i~~~~~-~g~~vlVHC~~G~~RS~~~~ 97 (146)
+...+|-+++. +|-.|||||..|..||..|+
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~ 362 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVS 362 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHH
Confidence 33444555554 56899999999999999888
No 51
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=86.19 E-value=2.8 Score=27.56 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=23.4
Q ss_pred HHHHHHHHHH-hhCCCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q psy1565 66 PDCFTYIDHC-HNDQSTVYVHCNAGISRSATIVIAYIMKHMGLD 108 (146)
Q Consensus 66 ~~~~~~i~~~-~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~ 108 (146)
+++.+++... ...+.+|+|+|..| +++++.++..| ...|.+
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 3444444332 34578999999998 55555554434 444543
No 52
>PLN02160 thiosulfate sulfurtransferase
Probab=85.97 E-value=1.5 Score=29.97 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=16.1
Q ss_pred hhCCCcEEEEcCCCCchhHHHH
Q psy1565 76 HNDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS~~~~ 97 (146)
...+.+|+++|..|. ||...+
T Consensus 78 ~~~~~~IivyC~sG~-RS~~Aa 98 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKAT 98 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHHH
Confidence 356789999999994 886554
No 53
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=84.53 E-value=3.6 Score=26.53 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=17.8
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 78 DQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
++.+|+|+|..|. ||.. ++..| ...|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 4579999999987 7744 33433 44554
No 54
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=83.89 E-value=1.8 Score=27.52 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=18.6
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
.++.+|+|+|..| .||...+ .+| ...|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a~-~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKAS-AYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHHHH-HHH-HHhCC
Confidence 4668999999988 4886543 444 33454
No 55
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=80.05 E-value=2.2 Score=27.22 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=18.9
Q ss_pred hhCCCcEEEEcCCCCchhHHHHHHHHHH
Q psy1565 76 HNDQSTVYVHCNAGISRSATIVIAYIMK 103 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS~~~~~aylm~ 103 (146)
....++++|+|+.|. ||.. ++.+|..
T Consensus 58 ~~~~~~ivv~C~~G~-rS~~-aa~~L~~ 83 (110)
T COG0607 58 LPDDDPIVVYCASGV-RSAA-AAAALKL 83 (110)
T ss_pred cCCCCeEEEEeCCCC-ChHH-HHHHHHH
Confidence 566799999999998 7744 3354554
No 56
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=79.97 E-value=2.5 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=18.6
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
..+++|+|+|..|. ||...+ ..| ...|.
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa-~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVA-ELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHH-HHH-HHcCc
Confidence 45689999999985 775433 333 34554
No 57
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=79.34 E-value=4.6 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=15.8
Q ss_pred hhCCCcEEEEcCCCCchhHHHH
Q psy1565 76 HNDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS~~~~ 97 (146)
.....+|+|+|..|. ||...+
T Consensus 61 ~~~~~~ivv~C~~G~-rs~~aa 81 (117)
T cd01522 61 VGKDRPVLLLCRSGN-RSIAAA 81 (117)
T ss_pred CCCCCeEEEEcCCCc-cHHHHH
Confidence 356789999999884 776544
No 58
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=78.63 E-value=3.3 Score=23.79 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhH
Q psy1565 95 TIVIAYIMKHMGLDLAQAHDLVKKV 119 (146)
Q Consensus 95 ~~~~aylm~~~~~~~~~a~~~vr~~ 119 (146)
.-+.+.||...|++..+|+..+++.
T Consensus 16 ~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 16 EQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3457889999999999999999985
No 59
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=78.39 E-value=6.6 Score=26.24 Aligned_cols=30 Identities=17% Similarity=0.535 Sum_probs=20.5
Q ss_pred hhCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 76 HNDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
+.+..+|+|.|..|-.||...+ +++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4567899999986555776544 55665564
No 60
>smart00400 ZnF_CHCC zinc finger.
Probab=78.07 E-value=3.3 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=23.7
Q ss_pred EEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHH
Q psy1565 83 YVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLV 116 (146)
Q Consensus 83 lVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~v 116 (146)
..||.+ .|++|-++ .++|...+.++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~i-~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNVI-SFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCHH-HHHHHHHCcCHHHHHHHh
Confidence 578874 45666554 667888899999999875
No 61
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=77.49 E-value=5.8 Score=27.41 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHhhCCCcEEEEcCCC
Q psy1565 64 HFPDCFTYIDHCHNDQSTVYVHCNAG 89 (146)
Q Consensus 64 ~~~~~~~~i~~~~~~g~~vlVHC~~G 89 (146)
...-+++++.++.++|.+|+|+|..-
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46678999999999999999999554
No 62
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=77.42 E-value=5.3 Score=27.40 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCC
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNA 88 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~ 88 (146)
..-+++++.++.++|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 567889999999999999999954
No 63
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=75.66 E-value=8.3 Score=27.15 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHhhCCCcEEEEcCCC
Q psy1565 64 HFPDCFTYIDHCHNDQSTVYVHCNAG 89 (146)
Q Consensus 64 ~~~~~~~~i~~~~~~g~~vlVHC~~G 89 (146)
.+.-++++++++.++|.+|+|+|...
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 46778999999999999999999554
No 64
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=75.29 E-value=4.5 Score=28.51 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=20.0
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
.++.+|++.|..|..||... ++++...|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~a--a~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNA--AKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHHH--HHHHHhcCC
Confidence 36689999999988788763 344444443
No 65
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=75.12 E-value=6.7 Score=28.70 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHH
Q psy1565 62 SKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMK 103 (146)
Q Consensus 62 ~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~ 103 (146)
.+.+.++.+.+.+++.++++|++. |.|+|++++.-+.+.
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~~ 62 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAAS 62 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHHH
Confidence 355788889999999999999987 888999988544443
No 66
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=73.94 E-value=4.3 Score=28.33 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCC
Q psy1565 66 PDCFTYIDHCHNDQSTVYVHCNA 88 (146)
Q Consensus 66 ~~~~~~i~~~~~~g~~vlVHC~~ 88 (146)
..+++++.++...|.+|+|+|..
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCC
Confidence 37899999999999999999954
No 67
>PRK01415 hypothetical protein; Validated
Probab=73.03 E-value=8.9 Score=29.19 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=19.5
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
.++++|+++|..|+ ||.. ++++|.. .|.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~k-Aa~~L~~-~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCEK-STSLLKS-IGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HHHH-HHHHHHH-cCC
Confidence 46789999999986 7754 4465544 454
No 68
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=72.92 E-value=18 Score=22.68 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=24.4
Q ss_pred EEEEecCCCCCC---ccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHH
Q psy1565 49 EGKTIYDEPGYN---LSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 49 ~~~p~~D~~~~~---~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~ 97 (146)
.++|........ ....+.............+.+|+++|..|. |+...+
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~ 84 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAA 84 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhH
Confidence 667765442111 112233333333333456688999996666 444444
No 69
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=71.02 E-value=10 Score=30.58 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=10.8
Q ss_pred CCCcEEEEcCCCC
Q psy1565 78 DQSTVYVHCNAGI 90 (146)
Q Consensus 78 ~g~~vlVHC~~G~ 90 (146)
.|..||.||+.|.
T Consensus 166 dg~~ILThcnsg~ 178 (363)
T PRK05772 166 DGDTVLTQCNAGG 178 (363)
T ss_pred CCCEEEEecCCcc
Confidence 5678999998873
No 70
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=70.92 E-value=9 Score=30.12 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=19.0
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 78 DQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
++++|+|+|..|. ||.. ++++|.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHH-cCC
Confidence 5689999999886 7754 4465554 444
No 71
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=70.47 E-value=8.5 Score=23.98 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=17.0
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIVIAYIMK 103 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~aylm~ 103 (146)
+..+|+|.|..|...++..++..|..
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~ 74 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSE 74 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHH
Confidence 36799999999864444555444433
No 72
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=70.37 E-value=5.2 Score=24.95 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHHHH
Q psy1565 80 STVYVHCNAGISRSATIV 97 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~ 97 (146)
++|++.|..|.|-|.++.
T Consensus 1 ~kilvvCg~G~gtS~ml~ 18 (87)
T cd05567 1 KKIVFACDAGMGSSAMGA 18 (87)
T ss_pred CEEEEECCCCccHHHHHH
Confidence 479999999999765544
No 73
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=70.30 E-value=6.4 Score=25.31 Aligned_cols=36 Identities=17% Similarity=0.379 Sum_probs=25.2
Q ss_pred EEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHC
Q psy1565 83 YVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 83 lVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~r 120 (146)
.-||. |.|.+|-++ .++|...++++.+|++.+.+.-
T Consensus 54 ~~~Cf-~Cg~~Gd~i-~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCF-GCGKGGDVI-DFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEET-TT--EE-HH-HHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEEC-CCCCCCcHH-hHHHHHhCCCHHHHHHHHHHHh
Confidence 78998 467777665 6678889999999999998865
No 74
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=70.18 E-value=12 Score=23.52 Aligned_cols=28 Identities=21% Similarity=0.650 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q psy1565 78 DQSTVYVHCNAGISRSATIVIAYIMKHMGLD 108 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~ 108 (146)
++.+|++.|..| .||...+ .+|.. .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~~-~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQVA-QWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHHH-HHHHH-cCCc
Confidence 468999999988 4775543 33433 5543
No 75
>PRK05320 rhodanese superfamily protein; Provisional
Probab=69.52 E-value=10 Score=28.92 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=18.9
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 78 DQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
++++|+++|..|. ||.. ++.+|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCC
Confidence 5789999999996 7755 4465554 443
No 76
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=68.90 E-value=13 Score=29.58 Aligned_cols=12 Identities=42% Similarity=0.839 Sum_probs=10.2
Q ss_pred CCC----cEEEEcCCC
Q psy1565 78 DQS----TVYVHCNAG 89 (146)
Q Consensus 78 ~g~----~vlVHC~~G 89 (146)
.|. .||.||+.|
T Consensus 142 dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 142 KGVAAPLRVLTHCNTG 157 (331)
T ss_pred CCCCCCceEEeecCCc
Confidence 566 899999988
No 77
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=68.86 E-value=4.5 Score=25.98 Aligned_cols=59 Identities=15% Similarity=0.313 Sum_probs=31.3
Q ss_pred CcEEEEcCCCCchhHHHH--HHHHHHHcCCC-------HHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHh
Q psy1565 80 STVYVHCNAGISRSATIV--IAYIMKHMGLD-------LAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKH 140 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~--~aylm~~~~~~-------~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l 140 (146)
.+||+-|.+|.+ |+.++ +--.+..+|++ ..+.-.... .--.+...|+....+.++++..
T Consensus 4 ~~ILl~C~~G~s-SS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~-~~Dvill~pqi~~~~~~i~~~~ 71 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLD-DADVVLLAPQVAYMLPDLKKET 71 (95)
T ss_pred cEEEEECCCchh-HHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcC-CCCEEEECchHHHHHHHHHHHh
Confidence 689999999998 44544 11112233543 222222221 1112556666666666666654
No 78
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=67.40 E-value=13 Score=29.64 Aligned_cols=17 Identities=47% Similarity=0.696 Sum_probs=13.8
Q ss_pred CCCcEEEEcCCCCchhH
Q psy1565 78 DQSTVYVHCNAGISRSA 94 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~ 94 (146)
.|..||.||..|..+|+
T Consensus 147 ~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 147 DGDTVLTHCNAGRLACV 163 (339)
T ss_pred CCCEEEEecCCcccccc
Confidence 57899999999976653
No 79
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=65.49 E-value=17 Score=24.68 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=35.8
Q ss_pred CCeEEEEEEecCCCCCC-ccccHHHHHHHHHHHhhCCCc-EEEEcCCCCchhHHHHHHHHHHHcC
Q psy1565 44 KEGVTEGKTIYDEPGYN-LSKHFPDCFTYIDHCHNDQST-VYVHCNAGISRSATIVIAYIMKHMG 106 (146)
Q Consensus 44 ~~i~~~~~p~~D~~~~~-~~~~~~~~~~~i~~~~~~g~~-vlVHC~~G~~RS~~~~~aylm~~~~ 106 (146)
..++-..+|+.|-..+. ....+..+.+.|.+..++++. .+--|-+|--++.+++++|.+...|
T Consensus 52 ~~i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 52 AEVHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred cEEEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 44555555666655333 222234445555555555443 3444456666888888888888766
No 80
>PRK13938 phosphoheptose isomerase; Provisional
Probab=64.95 E-value=16 Score=26.72 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=32.1
Q ss_pred CccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHH
Q psy1565 60 NLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKH 104 (146)
Q Consensus 60 ~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~ 104 (146)
.+.+.+.++.+.+.+++.+|++|++. |.|+|+.++..+....
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAEL 67 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHHc
Confidence 34555778888888889999999986 8888988885555443
No 81
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=64.59 E-value=10 Score=29.45 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=16.0
Q ss_pred cEEEEcCCCCchhHHHH
Q psy1565 81 TVYVHCNAGISRSATIV 97 (146)
Q Consensus 81 ~vlVHC~~G~~RS~~~~ 97 (146)
.|-|=|.+|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 78899999999999998
No 82
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=64.55 E-value=17 Score=23.67 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=13.7
Q ss_pred CCCcEEEEcCCCCchhHHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~ 97 (146)
.+.+|+++|..| .||...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 347899999988 4665554
No 83
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=64.21 E-value=17 Score=23.56 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCCchhHHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~ 97 (146)
...+|+++|..|-.||...+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCCEEEEECCCCCcccHHHH
Confidence 34789999998666776544
No 84
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=63.62 E-value=29 Score=21.27 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=13.7
Q ss_pred hhCCCcEEEEcCCCCchhHH
Q psy1565 76 HNDQSTVYVHCNAGISRSAT 95 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS~~ 95 (146)
...+.+|+|+|..|. ||..
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~ 71 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ 71 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH
Confidence 356789999999664 5444
No 85
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=63.35 E-value=20 Score=28.68 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=12.1
Q ss_pred CCCcEEEEcCCCCch
Q psy1565 78 DQSTVYVHCNAGISR 92 (146)
Q Consensus 78 ~g~~vlVHC~~G~~R 92 (146)
.|..||.||..|.-.
T Consensus 146 ~g~~ILThc~sg~la 160 (344)
T PRK05720 146 KGQGILTHCNAGWLA 160 (344)
T ss_pred CCCEEEEecCCCcce
Confidence 578899999998643
No 86
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=62.72 E-value=4.5 Score=26.23 Aligned_cols=10 Identities=40% Similarity=1.278 Sum_probs=8.7
Q ss_pred CcEEEEcCCC
Q psy1565 80 STVYVHCNAG 89 (146)
Q Consensus 80 ~~vlVHC~~G 89 (146)
.+|||||.=|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6999999866
No 87
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=62.50 E-value=17 Score=28.11 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchhHHHH
Q psy1565 81 TVYVHCNAGISRSATIV 97 (146)
Q Consensus 81 ~vlVHC~~G~~RS~~~~ 97 (146)
.|-|=|.+|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 68889999999999998
No 88
>PHA03338 US22 family homolog; Provisional
Probab=62.09 E-value=8.4 Score=30.05 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=30.8
Q ss_pred EEEcCCCCchhHHHHH-HHHHHHcCCCHHHHHHHHHhHCCCCC
Q psy1565 83 YVHCNAGISRSATIVI-AYIMKHMGLDLAQAHDLVKKVRPCIK 124 (146)
Q Consensus 83 lVHC~~G~~RS~~~~~-aylm~~~~~~~~~a~~~vr~~rp~~~ 124 (146)
-|||.+|++=||.+.- .|++..++..++...+++...+.+..
T Consensus 160 pihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe~~ 202 (344)
T PHA03338 160 PIHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGESV 202 (344)
T ss_pred EeccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCcee
Confidence 3699999999988774 45555567777777778877775533
No 89
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=61.84 E-value=6.5 Score=24.29 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHH
Q psy1565 81 TVYVHCNAGISRSATI 96 (146)
Q Consensus 81 ~vlVHC~~G~~RS~~~ 96 (146)
+|++-|.+|++-|-++
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 6899999999877555
No 90
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=61.24 E-value=11 Score=23.89 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=17.8
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 78 DQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
++.+|+|+|..|. ||... +..+...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~~--~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKAA--AELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHHH--HHHHHHcCC
Confidence 4689999999886 66443 334444554
No 91
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=61.03 E-value=13 Score=23.20 Aligned_cols=27 Identities=15% Similarity=0.415 Sum_probs=17.5
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 78 DQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
.+.+|+++|..|. ||... +.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~a-a~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADMT-ASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHHH-HHHH-HHcCC
Confidence 3579999999886 66543 3433 44554
No 92
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=60.99 E-value=8.9 Score=25.29 Aligned_cols=28 Identities=39% Similarity=0.680 Sum_probs=18.6
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
..+++|+|+|..|. ||...+ . .+...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~-~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-R-KLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-H-HHHHcCC
Confidence 45689999999985 775433 3 3344555
No 93
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=60.84 E-value=16 Score=23.00 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCCchhHHHH
Q psy1565 79 QSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 79 g~~vlVHC~~G~~RS~~~~ 97 (146)
+.+|+|+|..|. ||...+
T Consensus 65 ~~~vv~~c~~g~-~s~~~a 82 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFA 82 (105)
T ss_pred CCeEEEEeCCCc-cHHHHH
Confidence 579999999887 665544
No 94
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=60.16 E-value=11 Score=23.47 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=18.1
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
..+.+|+|+|..| .||...+ .+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~~-~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFAA-QEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHHH-HHH-HHcCC
Confidence 4568999999876 4775543 444 43453
No 95
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=59.90 E-value=14 Score=28.73 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhHHHH
Q psy1565 81 TVYVHCNAGISRSATIV 97 (146)
Q Consensus 81 ~vlVHC~~G~~RS~~~~ 97 (146)
.|-|=|.+|..||++++
T Consensus 247 ~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIA 263 (288)
T ss_pred EEEEecCCCcccHHHHH
Confidence 58899999999999988
No 96
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=59.67 E-value=22 Score=28.55 Aligned_cols=11 Identities=55% Similarity=0.993 Sum_probs=9.0
Q ss_pred CcEEEEcCCCC
Q psy1565 80 STVYVHCNAGI 90 (146)
Q Consensus 80 ~~vlVHC~~G~ 90 (146)
+.||.||++|.
T Consensus 161 g~ILTHcnaG~ 171 (356)
T PRK08334 161 GNVLTHCNAGS 171 (356)
T ss_pred CCEEEecCcch
Confidence 34999999876
No 97
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=59.41 E-value=14 Score=28.36 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=19.1
Q ss_pred CCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy1565 87 NAGISRSATIVIAYIMKHMGLDLAQAHD 114 (146)
Q Consensus 87 ~~G~~RS~~~~~aylm~~~~~~~~~a~~ 114 (146)
--|+||||+-+.+-+ ..|.+.++|.+
T Consensus 159 ~PGiSRSG~Ti~~~l--~~G~~r~~A~~ 184 (259)
T PF02673_consen 159 IPGISRSGATITAGL--LLGLDREEAAR 184 (259)
T ss_pred CCCcChHHHHHHHHH--HCCCCHHHHHH
Confidence 459999999886632 36888888743
No 98
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=59.33 E-value=13 Score=24.67 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=16.9
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHH
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMK 103 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~ 103 (146)
.+..+|+|||..+-.||+..+ .+|..
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa-~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMA-RHLRN 91 (121)
T ss_pred CCCCEEEEECCCccccHHHHH-HHHHH
Confidence 456899999973335776644 44444
No 99
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=59.06 E-value=9.9 Score=23.78 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=17.7
Q ss_pred hhCCCcEEEEcCCCCchhHHHHHHHHHHHcC
Q psy1565 76 HNDQSTVYVHCNAGISRSATIVIAYIMKHMG 106 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~ 106 (146)
+....+|+|+|..|. ||.. ++ ..+...|
T Consensus 58 ~~~~~~ivv~c~~g~-~s~~-~~-~~l~~~G 85 (103)
T cd01447 58 FAEDKPFVFYCASGW-RSAL-AG-KTLQDMG 85 (103)
T ss_pred CCCCCeEEEEcCCCC-cHHH-HH-HHHHHcC
Confidence 356789999998874 7643 32 3344444
No 100
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=57.63 E-value=13 Score=28.48 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=13.5
Q ss_pred hCCCcEEEEcCCCCchhHH
Q psy1565 77 NDQSTVYVHCNAGISRSAT 95 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~ 95 (146)
..+++|+++|..|. ||+.
T Consensus 229 ~~~~~ii~yC~~G~-~A~~ 246 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAAV 246 (281)
T ss_pred CCCCCEEEECCcHH-HHHH
Confidence 35689999998887 5544
No 101
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=56.27 E-value=17 Score=22.74 Aligned_cols=19 Identities=21% Similarity=0.593 Sum_probs=14.0
Q ss_pred hhCCCcEEEEcCCCCchhHH
Q psy1565 76 HNDQSTVYVHCNAGISRSAT 95 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS~~ 95 (146)
...+.+|+++|..|. ||..
T Consensus 51 ~~~~~~iv~~c~~g~-~s~~ 69 (99)
T cd01527 51 LVGANAIIFHCRSGM-RTQQ 69 (99)
T ss_pred CCCCCcEEEEeCCCc-hHHH
Confidence 345689999999885 5544
No 102
>KOG1530|consensus
Probab=55.66 E-value=18 Score=24.94 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=24.9
Q ss_pred EEEEEEecCCCCCCccccHHHHHHHHHHHhhC-CCcEEEEcCCCCchhHH
Q psy1565 47 VTEGKTIYDEPGYNLSKHFPDCFTYIDHCHND-QSTVYVHCNAGISRSAT 95 (146)
Q Consensus 47 ~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~-g~~vlVHC~~G~~RS~~ 95 (146)
.-.++|+.-.+..-... -+++.+.+...... ...|+++|..|. ||..
T Consensus 57 ~siNiPy~~~~~~~~l~-~~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 57 ASINIPYMSRPGAGALK-NPEFLKQVGSSKPPHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred ceEeccccccccccccC-CHHHHHHhcccCCCCCCcEEEEeccCc-chhH
Confidence 35667764444222221 22333333333322 359999999998 7654
No 103
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=55.61 E-value=36 Score=25.12 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHH
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKH 104 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~ 104 (146)
|.++++.|-+ ..++|+|- |+||||.++=.+.|..
T Consensus 28 ~~~a~~~i~~---~~gkv~V~---G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 28 FVRAVELILE---CKGKVFVT---GVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHh---cCCcEEEE---cCChhHHHHHHHHHHH
Confidence 4444444443 36888874 9999999995555553
No 104
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=54.90 E-value=32 Score=22.04 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=18.7
Q ss_pred hhCCCcEEEEcCCCCc-hhHHHHHHHHHHHcCC
Q psy1565 76 HNDQSTVYVHCNAGIS-RSATIVIAYIMKHMGL 107 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~-RS~~~~~aylm~~~~~ 107 (146)
+..+.+|+|.|..|.+ ||..++ . .+...|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a-~-~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAA-L-KLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHH-H-HHHHcCC
Confidence 4567899999998864 444433 3 3344454
No 105
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=54.44 E-value=33 Score=22.03 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCCchhHHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~ 97 (146)
.+.+|+|+|..|. ||...+
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa 75 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAK 75 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHH
Confidence 4578999999985 765553
No 106
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=54.20 E-value=17 Score=27.80 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=18.2
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy1565 88 AGISRSATIVIAYIMKHMGLDLAQAHD 114 (146)
Q Consensus 88 ~G~~RS~~~~~aylm~~~~~~~~~a~~ 114 (146)
-|+||||+-+.+-+ ..|.+.++|.+
T Consensus 160 PGiSRSG~TI~a~l--~~G~~r~~Aa~ 184 (255)
T TIGR00753 160 PGVSRSGSTISGGL--FIGLNRKAAAE 184 (255)
T ss_pred cCCCCchHHHHHHH--HcCCCHHHHHH
Confidence 49999999886632 36888887733
No 107
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=54.10 E-value=17 Score=28.22 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=13.8
Q ss_pred hhCCCcEEEEcCCCCchh
Q psy1565 76 HNDQSTVYVHCNAGISRS 93 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS 93 (146)
+...+.|++.|..|+.=|
T Consensus 231 i~~~~~vI~yCgsG~~As 248 (285)
T COG2897 231 IDPDKEVIVYCGSGVRAS 248 (285)
T ss_pred CCCCCCEEEEcCCchHHH
Confidence 456799999998888433
No 108
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=53.43 E-value=52 Score=26.90 Aligned_cols=36 Identities=22% Similarity=0.488 Sum_probs=28.3
Q ss_pred EEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHC
Q psy1565 83 YVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 83 lVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~r 120 (146)
..||. |.|.+|-+ +-++|...++++.+|++.+.+.-
T Consensus 55 ~~~Cf-~Cg~~Gd~-i~fv~~~~~~sf~eA~~~La~~~ 90 (415)
T TIGR01391 55 FYHCF-GCGAGGDA-IKFLMEIEGISFVEAVEELAKRA 90 (415)
T ss_pred cEEEC-CCCCCCCH-HHHHHHHhCCCHHHHHHHHHHHc
Confidence 58887 44555654 47889999999999999998865
No 109
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=52.95 E-value=18 Score=28.02 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=18.4
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy1565 88 AGISRSATIVIAYIMKHMGLDLAQAHD 114 (146)
Q Consensus 88 ~G~~RS~~~~~aylm~~~~~~~~~a~~ 114 (146)
-|+||||+-+.+-++ .|++.++|.+
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~ 190 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAAR 190 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHH
Confidence 499999998866333 5888888733
No 110
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=51.61 E-value=47 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHH
Q psy1565 63 KHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVI 98 (146)
Q Consensus 63 ~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~ 98 (146)
+.+.++.+.+.+.+.+|++|++. |.|-|++++.
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~ 51 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVC---GNGHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHH
Confidence 34788899999999999998886 5566666653
No 111
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=51.36 E-value=12 Score=24.44 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=11.5
Q ss_pred CcEEEEcCCCCchh
Q psy1565 80 STVYVHCNAGISRS 93 (146)
Q Consensus 80 ~~vlVHC~~G~~RS 93 (146)
++||+-|.+|.+-|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 47999999999544
No 112
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.00 E-value=26 Score=22.77 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCc
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGIS 91 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~ 91 (146)
.+.++++|.+..+..++|+.|=+.|.+
T Consensus 10 T~aAl~Li~~l~~~hgpvmFHQSGGCC 36 (116)
T COG3564 10 TPAALDLIAELQAEHGPVMFHQSGGCC 36 (116)
T ss_pred CHHHHHHHHHHHHhcCCEEEeccCCcc
Confidence 568899999999999999999777765
No 113
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=50.67 E-value=21 Score=27.48 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=18.5
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy1565 88 AGISRSATIVIAYIMKHMGLDLAQAHD 114 (146)
Q Consensus 88 ~G~~RS~~~~~aylm~~~~~~~~~a~~ 114 (146)
-|+||||+-+.+- ...|.+.++|.+
T Consensus 164 PGiSRSG~TI~~~--l~~G~~r~~Aa~ 188 (268)
T PRK00281 164 PGTSRSGATISGG--LLLGLSREAAAE 188 (268)
T ss_pred CCCCccHHHHHHH--HHcCCCHHHHHH
Confidence 5999999988663 336888888743
No 114
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=50.60 E-value=41 Score=24.29 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHH
Q psy1565 62 SKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 62 ~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~ 97 (146)
.+.+.++++.|.+++.+|++|++. |.|.|+.++
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 356889999999999999999875 677777765
No 115
>PRK05569 flavodoxin; Provisional
Probab=49.94 E-value=58 Score=21.75 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=49.9
Q ss_pred CCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCc-hhHHHHHHHHHHHcCCCHHHHHHHHHhHCCC
Q psy1565 44 KEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGIS-RSATIVIAYIMKHMGLDLAQAHDLVKKVRPC 122 (146)
Q Consensus 44 ~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~-RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~ 122 (146)
...-.+-.|+......+ .+.+..+++.+....-+|+++.+.+..|.+ ..+.-.+.-.+...|+..... +.. .
T Consensus 49 ~d~iilgsPty~~~~~~-~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~---~~~---~ 121 (141)
T PRK05569 49 ADAVAFGSPSMDNNNIE-QEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD---LAV---N 121 (141)
T ss_pred CCEEEEECCCcCCCcCC-hHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee---EEE---c
Confidence 34445556655543211 112444444444333468999999999876 232222333344455544322 111 3
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q psy1565 123 IKPNPGFLRQLKEWEQKHL 141 (146)
Q Consensus 123 ~~p~~~~~~~L~~~~~~l~ 141 (146)
..|+..-++...+|-+++.
T Consensus 122 ~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 122 ESPNKEELNSAKELGKKLA 140 (141)
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 4588888888888887764
No 116
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=49.61 E-value=76 Score=21.16 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHHhhCCCcEEEEc-CCCCchhHHHHHHHHHHHcC----CCHHHHHHHHHhHC
Q psy1565 63 KHFPDCFTYIDHCHNDQSTVYVHC-NAGISRSATIVIAYIMKHMG----LDLAQAHDLVKKVR 120 (146)
Q Consensus 63 ~~~~~~~~~i~~~~~~g~~vlVHC-~~G~~RS~~~~~aylm~~~~----~~~~~a~~~vr~~r 120 (146)
..++.+...+....++ |+ ..|.-||+.+++..++..+| .+.+++.+++.+.-
T Consensus 49 ~i~~kAa~l~~~l~~~------HpF~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA 105 (121)
T TIGR01550 49 DIFEVSAVLLYALIRS------HPFNNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVA 105 (121)
T ss_pred CHHHHHHHHHHHHHHh------CCCccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHH
Confidence 4466666666666554 55 56888999999888888776 55677777777654
No 117
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=49.60 E-value=39 Score=21.69 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCCchhHHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~ 97 (146)
...+|+|+|..+-.||...+
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAA 80 (113)
T ss_pred CCCeEEEEeecCCcchHHHH
Confidence 35799999985546776654
No 118
>PRK05667 dnaG DNA primase; Validated
Probab=49.50 E-value=67 Score=27.60 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=30.5
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCC
Q psy1565 81 TVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCI 123 (146)
Q Consensus 81 ~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~ 123 (146)
+=..||.+ .|.+|-+ .-++|...++++.+|++.+.+.-...
T Consensus 55 k~~~~CF~-Cg~~Gd~-i~fv~~~~~~sf~eAv~~La~~~gi~ 95 (580)
T PRK05667 55 KQFYHCFG-CGAGGDV-IKFLMEYEGLSFVEAVEELADRAGIE 95 (580)
T ss_pred CCeEEECC-CCCCCCH-HHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 33689973 4555654 47789999999999999998776433
No 119
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=47.56 E-value=17 Score=23.11 Aligned_cols=18 Identities=17% Similarity=0.433 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHHH
Q psy1565 80 STVYVHCNAGISRSATIV 97 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~ 97 (146)
.+|++-|..|++-|.+++
T Consensus 3 ~kILvvCgsG~~TS~m~~ 20 (94)
T PRK10310 3 RKIIVACGGAVATSTMAA 20 (94)
T ss_pred CeEEEECCCchhHHHHHH
Confidence 379999999999776654
No 120
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=47.29 E-value=24 Score=26.52 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=30.2
Q ss_pred EEEEE-ecCCCCCCccccHHHHHHHHHHHhhCC-CcEEEEc-CCCCchhHHHHHHHHHH
Q psy1565 48 TEGKT-IYDEPGYNLSKHFPDCFTYIDHCHNDQ-STVYVHC-NAGISRSATIVIAYIMK 103 (146)
Q Consensus 48 ~~~~p-~~D~~~~~~~~~~~~~~~~i~~~~~~g-~~vlVHC-~~G~~RS~~~~~aylm~ 103 (146)
.+-+. +.|+.... ++.-+..+++-+.++| ++|+||| ..|..-++.-+..|+-.
T Consensus 30 lHl~GLlSdGGVHS---h~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~ 85 (223)
T PF06415_consen 30 LHLMGLLSDGGVHS---HIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEE 85 (223)
T ss_dssp EEEEEEESS-SSS-----HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHH
T ss_pred EEEEEEecCCCccc---cHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHH
Confidence 33344 35555444 3444555666666677 6799999 55888766666666544
No 121
>PHA02540 61 DNA primase; Provisional
Probab=47.13 E-value=54 Score=26.19 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=28.9
Q ss_pred CcEEEEcCC-CCchhHHHHHHHHHHHcCCCHHHHHHHHHhHC
Q psy1565 80 STVYVHCNA-GISRSATIVIAYIMKHMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 80 ~~vlVHC~~-G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~r 120 (146)
+....||.+ |.|.+ + ..++|...+.++.||+..+.+..
T Consensus 52 ~~~~yhCFgCGa~Gd--~-i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 52 DGGVFKCHNCGYHRP--F-GNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred CceEEEecCCCCCCC--H-HHHHHHhcCCChHHHHHHHHHHh
Confidence 368999954 55544 3 38899999999999999776654
No 122
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=46.75 E-value=34 Score=26.91 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCCchhHHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~ 97 (146)
.+..|+|+|..|-.||...+
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa 92 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLA 92 (311)
T ss_pred CCCcEEEEECCCChHHHHHH
Confidence 34459999976656887765
No 123
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=46.59 E-value=36 Score=27.17 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCCchhHHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~ 97 (146)
++.+|+|+|..|-.||..++
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa 106 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ 106 (345)
T ss_pred CCCeEEEEECCCChHHHHHH
Confidence 57899999976667988765
No 124
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=46.00 E-value=36 Score=25.53 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcC
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMG 106 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~ 106 (146)
.+.+.+.|.+..+..+..+.-|-+|--++.++.++|.+...|
T Consensus 97 ~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~g 138 (224)
T PF09623_consen 97 ADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFG 138 (224)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcC
Confidence 445666666666664566666677777888888888888766
No 125
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=44.58 E-value=29 Score=25.46 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhHC
Q psy1565 98 IAYIMKHMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 98 ~aylm~~~~~~~~~a~~~vr~~r 120 (146)
=+.||..+|+|-++|++.+|+.-
T Consensus 151 KglLM~~~g~sE~EAy~~lR~~A 173 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRRTA 173 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 45689999999999999999853
No 126
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=44.56 E-value=15 Score=29.20 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCCchh----HHHHHHHHHHHcC
Q psy1565 78 DQSTVYVHCNAGISRS----ATIVIAYIMKHMG 106 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS----~~~~~aylm~~~~ 106 (146)
++..||-||++|.==+ .++...+.+...|
T Consensus 149 ~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~g 181 (346)
T COG0182 149 DGDTVLTHCNAGALATVGYGTALGVIRSAHEEG 181 (346)
T ss_pred cCCeEEeeecCCceeecCccchHHHHHHHHHCC
Confidence 5689999999985322 3444455566555
No 127
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=43.69 E-value=20 Score=22.83 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=31.0
Q ss_pred cEEEEcCCCCchhHHHH--HHHHHHHcCCC-------HHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHh
Q psy1565 81 TVYVHCNAGISRSATIV--IAYIMKHMGLD-------LAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKH 140 (146)
Q Consensus 81 ~vlVHC~~G~~RS~~~~--~aylm~~~~~~-------~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l 140 (146)
+||+-|.+|++-| +++ +--.+..+|++ ..++-.... .---+...|++...+.++++..
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~-~~Diil~~Pqv~~~~~~i~~~~ 67 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPESELEEYID-DADVVLLGPQVRYMLDEVKKKA 67 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecHHHHHHhcC-CCCEEEEChhHHHHHHHHHHHh
Confidence 5899999999766 333 11122233443 222222211 1113666777777777777644
No 128
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=43.46 E-value=51 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=18.3
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
..+++|+++|..|. ||+... +++...|.
T Consensus 221 ~~~~~VVvYC~sG~-rAa~~~--~~L~~lG~ 248 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGFTY--LVAKALGY 248 (610)
T ss_pred CCCCCEEEECCCCh-HHHHHH--HHHHHcCC
Confidence 45689999999986 665543 33444443
No 129
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=43.08 E-value=35 Score=21.62 Aligned_cols=28 Identities=7% Similarity=0.333 Sum_probs=22.6
Q ss_pred HHHHHHHhhCCCcEEEEcCCCCchhHHH
Q psy1565 69 FTYIDHCHNDQSTVYVHCNAGISRSATI 96 (146)
Q Consensus 69 ~~~i~~~~~~g~~vlVHC~~G~~RS~~~ 96 (146)
.++++.+.+.+++|+|+++.|..=.|.+
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L 31 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRV 31 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEE
Confidence 4577888878899999999998766554
No 130
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=43.03 E-value=26 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.2
Q ss_pred EEEEc-CCCCchhHHHHHHHHHHHcCCCHH
Q psy1565 82 VYVHC-NAGISRSATIVIAYIMKHMGLDLA 110 (146)
Q Consensus 82 vlVHC-~~G~~RS~~~~~aylm~~~~~~~~ 110 (146)
+.||. ..|.||++=+.+-+++...|.++.
T Consensus 120 ~~IHPF~DGNGRt~Rll~~l~L~~~g~~p~ 149 (186)
T TIGR02613 120 VAIHPFPNGNGRHARLATDLLLEQQGYSPF 149 (186)
T ss_pred heecCcCCCCcHHHHHHHHHHHHHCCCCCc
Confidence 78999 779999999998888888886533
No 131
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=42.98 E-value=26 Score=22.86 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=31.0
Q ss_pred CcEEEEcCCCCchhHHH-HHHHHHHHcCCCHH-HH--HHHHHhHCC--C-CCCCHHHHHHHHHHHH
Q psy1565 80 STVYVHCNAGISRSATI-VIAYIMKHMGLDLA-QA--HDLVKKVRP--C-IKPNPGFLRQLKEWEQ 138 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~-~~aylm~~~~~~~~-~a--~~~vr~~rp--~-~~p~~~~~~~L~~~~~ 138 (146)
++|++-|.+|.|-|-.+ -+--.....|++.+ +| .+....... + +...|++...+.+.++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~Pqi~~~~~~i~~ 69 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQR 69 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEECHHHHHHHHHHHh
Confidence 58999999999966554 22222344454432 23 222222221 2 4555566665555544
No 132
>PRK13936 phosphoheptose isomerase; Provisional
Probab=42.36 E-value=78 Score=22.86 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHH
Q psy1565 64 HFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAY 100 (146)
Q Consensus 64 ~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~ay 100 (146)
.+.++++.+-+.+.++++|++. |.|.|+.++.-+
T Consensus 28 ~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~~~ 61 (197)
T PRK13936 28 PIAQAVELMVQALLNEGKILAC---GNGGSAADAQHF 61 (197)
T ss_pred HHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHHHH
Confidence 3667788888888899999987 888888777443
No 133
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=42.15 E-value=66 Score=26.44 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhCC-CcEEEEcC----------------CCCchhHHHHHHHHHHHcCCCHHH-HHHHHH
Q psy1565 65 FPDCFTYIDHCHNDQ-STVYVHCN----------------AGISRSATIVIAYIMKHMGLDLAQ-AHDLVK 117 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g-~~vlVHC~----------------~G~~RS~~~~~aylm~~~~~~~~~-a~~~vr 117 (146)
-+++++.|.+..++| .=+-|||. .=+||.|++.++|++.....+|.- -++++-
T Consensus 138 ~d~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lL 208 (420)
T PF01964_consen 138 EDDFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLL 208 (420)
T ss_dssp HHHHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHH
Confidence 467888888888877 67889995 236899999999999988777553 344443
No 134
>PRK07411 hypothetical protein; Validated
Probab=41.57 E-value=37 Score=27.47 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=18.5
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q psy1565 78 DQSTVYVHCNAGISRSATIVIAYIMKHMGLD 108 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~ 108 (146)
++.+|+|+|..|. ||.. ++..| ...|.+
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L-~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGIL-KEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHH-HHcCCC
Confidence 5689999999886 8755 33433 445543
No 135
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=41.49 E-value=31 Score=27.42 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=15.8
Q ss_pred HHHHHHHhhCCCcEEEEcCCCCc
Q psy1565 69 FTYIDHCHNDQSTVYVHCNAGIS 91 (146)
Q Consensus 69 ~~~i~~~~~~g~~vlVHC~~G~~ 91 (146)
.++..+.+..|..||.||+.|.-
T Consensus 127 ~~~g~~~I~~g~~ILThcnsg~l 149 (329)
T PRK06371 127 GEYGNELIKNGARILTHCNAGAL 149 (329)
T ss_pred HHHHHHHcCCCCEEEEeCCCCcc
Confidence 33344444567899999998863
No 136
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.38 E-value=53 Score=23.14 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHHHHHHHHh--hCCCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q psy1565 67 DCFTYIDHCH--NDQSTVYVHCNAGISRSATIVIAYIMKHMGLD 108 (146)
Q Consensus 67 ~~~~~i~~~~--~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~ 108 (146)
.+.++|.+.. ..+.+|+|-|-.|.+=.-.+++|..+...|+.
T Consensus 11 ~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~ 54 (169)
T PF03853_consen 11 AIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN 54 (169)
T ss_dssp HHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe
Confidence 4566777777 67799999998876644445555555555543
No 137
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=40.37 E-value=59 Score=21.71 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHhhCCCcEEEEcCCCCchhHH
Q psy1565 64 HFPDCFTYIDHCHNDQSTVYVHCNAGISRSAT 95 (146)
Q Consensus 64 ~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~ 95 (146)
.+.++.+.+......+.+|+|....|.|++-.
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 46677888888888899999999999999864
No 138
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.31 E-value=26 Score=22.69 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=27.8
Q ss_pred cEEEEcCCCCchhHHHHHHH---HHHHcCCCH-------HHHHHHHHhHCCCCCCCHHHHHHHHHHHHHh
Q psy1565 81 TVYVHCNAGISRSATIVIAY---IMKHMGLDL-------AQAHDLVKKVRPCIKPNPGFLRQLKEWEQKH 140 (146)
Q Consensus 81 ~vlVHC~~G~~RS~~~~~ay---lm~~~~~~~-------~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l 140 (146)
+|++-|.+| -|.++++-- .+..+|.+. .+.-..+... -.+...|+....+.++++..
T Consensus 2 ~Ill~C~~G--aSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~-Dvill~PQv~~~~~~i~~~~ 68 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDY-DLVILAPQMASYYDELKKDT 68 (99)
T ss_pred EEEEECCCC--CCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCC-CEEEEcChHHHHHHHHHHHh
Confidence 589999777 445554332 223345432 2222222211 12455555555666665544
No 139
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=39.09 E-value=67 Score=26.50 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhCC-CcEEEEcC----------------CCCchhHHHHHHHHHHHcCCCHH-HHHHHHH
Q psy1565 65 FPDCFTYIDHCHNDQ-STVYVHCN----------------AGISRSATIVIAYIMKHMGLDLA-QAHDLVK 117 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g-~~vlVHC~----------------~G~~RS~~~~~aylm~~~~~~~~-~a~~~vr 117 (146)
-+++++.|.++.++| .=+-|||. .=+||.|++.++|++.....+|. +-++++-
T Consensus 142 ~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lL 212 (431)
T PRK13352 142 EDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLL 212 (431)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHH
Confidence 456778888888877 67889994 23689999999999987765543 4444443
No 140
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=39.02 E-value=1.2e+02 Score=24.06 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=41.0
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCc-hhHHHHHHHHHHHcC----CCHHHHHHHHHhHCCCCCCCHHHHHHHH
Q psy1565 68 CFTYIDHCHNDQSTVYVHCNAGIS-RSATIVIAYIMKHMG----LDLAQAHDLVKKVRPCIKPNPGFLRQLK 134 (146)
Q Consensus 68 ~~~~i~~~~~~g~~vlVHC~~G~~-RS~~~~~aylm~~~~----~~~~~a~~~vr~~rp~~~p~~~~~~~L~ 134 (146)
+..++-. ..|-+|+.|...|++ ++|+ +-++...| .+++++.+.+.+......+.+.|-..+.
T Consensus 90 ~~a~vlA--~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~ 156 (330)
T TIGR01245 90 ASAFVAA--AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMK 156 (330)
T ss_pred HHHHHHH--hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHH
Confidence 3444433 568999999999988 8776 34555555 6678888888877655444444444433
No 141
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=38.02 E-value=88 Score=24.10 Aligned_cols=35 Identities=3% Similarity=0.147 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHH
Q psy1565 67 DCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYI 101 (146)
Q Consensus 67 ~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~ayl 101 (146)
+..+.|...+..|+.+++.-..|.|.|-++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 34555666677889999999999999977765544
No 142
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=38.02 E-value=88 Score=24.10 Aligned_cols=35 Identities=3% Similarity=0.147 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHH
Q psy1565 67 DCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYI 101 (146)
Q Consensus 67 ~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~ayl 101 (146)
+..+.|...+..|+.+++.-..|.|.|-++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 34555666677889999999999999977765544
No 143
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=38.01 E-value=26 Score=20.59 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhHHHH
Q psy1565 81 TVYVHCNAGISRSATIV 97 (146)
Q Consensus 81 ~vlVHC~~G~~RS~~~~ 97 (146)
++++-|..|.+-|.++.
T Consensus 1 ~il~vc~~G~~~s~~l~ 17 (84)
T cd00133 1 KILVVCGSGIGSSSMLA 17 (84)
T ss_pred CEEEECCCcHhHHHHHH
Confidence 58899999998776655
No 144
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=37.98 E-value=31 Score=22.63 Aligned_cols=63 Identities=14% Similarity=0.268 Sum_probs=36.1
Q ss_pred CcEEEEcCCCCchhHHHH-HHHHHHHcC-------CCHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHhcCC
Q psy1565 80 STVYVHCNAGISRSATIV-IAYIMKHMG-------LDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKD 143 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~-~aylm~~~~-------~~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~~~ 143 (146)
.+|++-|.+|.|-|-.+- .--.....| ++-.++-+++.+.- .+...|+....+.++++..-+.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~D-vvLlGPQv~y~~~~~~~~~~~~ 72 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNAD-VVLLGPQVRYMLKQLKEAAEEK 72 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcCC-EEEEChHHHHHHHHHHHHhccc
Confidence 479999999998775543 111111223 34444555554322 4666666666777777765443
No 145
>PRK08624 hypothetical protein; Provisional
Probab=37.92 E-value=21 Score=28.91 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=30.9
Q ss_pred EEEcCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhHCC
Q psy1565 83 YVHCNAGISRSATIVIAYIMK-----HMGLDLAQAHDLVKKVRP 121 (146)
Q Consensus 83 lVHC~~G~~RS~~~~~aylm~-----~~~~~~~~a~~~vr~~rp 121 (146)
.-||..|.|=+|-++ -++|. ..+.++.+|++++.+.-.
T Consensus 59 ~yhCF~GCGa~GDVf-~Fv~~~~~me~~~lsF~eAve~LA~~aG 101 (373)
T PRK08624 59 NFHCYTRCGDIFDVF-ELLCKRLKMEGKALSFSKAIRKITKILG 101 (373)
T ss_pred EEEEeCCCCCCCcee-eehhhhhhccccCCCHHHHHHHHHHHhC
Confidence 789998888888777 45555 557999999999999864
No 146
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=37.68 E-value=1e+02 Score=19.40 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=19.9
Q ss_pred HHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 70 TYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 70 ~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
+++.. +....+++|.|..|. ||.. ++. .+...|.
T Consensus 50 ~~~~~-~~~~~~ivv~c~~g~-~s~~-a~~-~L~~~G~ 83 (108)
T PRK00162 50 AFMRQ-ADFDTPVMVMCYHGN-SSQG-AAQ-YLLQQGF 83 (108)
T ss_pred HHHHh-cCCCCCEEEEeCCCC-CHHH-HHH-HHHHCCc
Confidence 34443 345689999999886 5533 333 3334454
No 147
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=37.58 E-value=45 Score=25.81 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=16.7
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHH
Q psy1565 88 AGISRSATIVIAYIMKHMGLDLAQAH 113 (146)
Q Consensus 88 ~G~~RS~~~~~aylm~~~~~~~~~a~ 113 (146)
-|.||||+-+.+-+. .|.+.+.|.
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aa 188 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAA 188 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHH
Confidence 589999998855322 577777663
No 148
>PRK10347 cell filamentation protein Fic; Provisional
Probab=37.44 E-value=46 Score=24.49 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=29.0
Q ss_pred EEEc-CCCCchhHHHHHHHHHHHcC----CCHHHHHHHHHhHCCCCCCC
Q psy1565 83 YVHC-NAGISRSATIVIAYIMKHMG----LDLAQAHDLVKKVRPCIKPN 126 (146)
Q Consensus 83 lVHC-~~G~~RS~~~~~aylm~~~~----~~~~~a~~~vr~~rp~~~p~ 126 (146)
.||. +.|.|||.-+-+..++...| |+..+.-.+++........+
T Consensus 133 ~iHPFREGNGRt~r~f~~~la~~aG~~idw~~~~~~~~~~A~~~a~~~d 181 (200)
T PRK10347 133 VLHPFRVGSGLAQRIFFEQLAIHAGYQLSWQGIEKEAWNQANQSGAMGD 181 (200)
T ss_pred HhccccCCCHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHhcCC
Confidence 7899 77999999988887777665 33334455555544333333
No 149
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=36.59 E-value=64 Score=20.61 Aligned_cols=28 Identities=18% Similarity=0.491 Sum_probs=17.9
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
.++.+|+|+|..|. ||... ++.+...|.
T Consensus 76 ~~~~~iv~yc~~g~-~s~~~--~~~l~~~G~ 103 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACVL--LLALELLGY 103 (118)
T ss_pred CCCCCEEEECCcHH-HHHHH--HHHHHHcCC
Confidence 35689999998874 66543 333444454
No 150
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=36.22 E-value=58 Score=24.68 Aligned_cols=54 Identities=13% Similarity=-0.041 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHH------HHHcCCCHHHHHHHHHh
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYI------MKHMGLDLAQAHDLVKK 118 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~ayl------m~~~~~~~~~a~~~vr~ 118 (146)
..-+.++++-+.+.+.+|.|||+...+..--+.-.+- +.-..-+.+.|.++++.
T Consensus 113 ~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 113 QWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 3445556666666789999999875443333332210 00013456677766664
No 151
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=35.46 E-value=99 Score=18.38 Aligned_cols=28 Identities=32% Similarity=0.705 Sum_probs=16.4
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
..+.+|+|+|..|. |+..+ ++.+...|.
T Consensus 54 ~~~~~iv~~c~~g~-~a~~~--~~~l~~~G~ 81 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAKA--AWLLRELGF 81 (100)
T ss_pred CCCCeEEEEeCCCc-HHHHH--HHHHHHcCC
Confidence 45689999996554 55332 333444443
No 152
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=35.16 E-value=50 Score=28.51 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH---HcCCCHHHHHHHHHh
Q psy1565 80 STVYVHCNAGISRSATIVIAYIMK---HMGLDLAQAHDLVKK 118 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~~aylm~---~~~~~~~~a~~~vr~ 118 (146)
.+..|||+.|. ++++..+||. ..+.+..+|+..++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 78999999998 5777788764 347888888876664
No 153
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=34.96 E-value=86 Score=25.82 Aligned_cols=53 Identities=21% Similarity=0.326 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhCC-CcEEEEcC----------------CCCchhHHHHHHHHHHHcCCCHH-HHHHHHH
Q psy1565 65 FPDCFTYIDHCHNDQ-STVYVHCN----------------AGISRSATIVIAYIMKHMGLDLA-QAHDLVK 117 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g-~~vlVHC~----------------~G~~RS~~~~~aylm~~~~~~~~-~a~~~vr 117 (146)
-+++++.|.++.+.| .=+-|||. .=+||.|++.++|++.....+|. +-++++-
T Consensus 139 ~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lL 209 (423)
T TIGR00190 139 EDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYIL 209 (423)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHH
Confidence 456788888888877 67889995 13689999999999997765543 4444443
No 154
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=34.46 E-value=2e+02 Score=24.52 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=40.1
Q ss_pred EEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCC-CCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCC
Q psy1565 50 GKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNA-GISRSATIVIAYIMKHMGLDLAQAHDLVKKVRP 121 (146)
Q Consensus 50 ~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~-G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp 121 (146)
..|+.+--+|++.= ...+.+-||.+ |.|..+. .++|...|.++.+|+..+..+-.
T Consensus 36 lCPFH~EktPSf~V--------------~~~k~~yhCFGCg~~Gd~i---~Fl~~~~g~sf~eav~~La~~~g 91 (568)
T COG0358 36 LCPFHAEKTPSFTV--------------SPEKGFYHCFGCGAGGDAI---KFLMELLGLSFDEAVLQLAGRAG 91 (568)
T ss_pred ECcCCCCCCCCceE--------------eCCCCeEecCCCCCCccHH---HHHHHhcCCCHHHHHHHHHHHhC
Confidence 35666666666442 24788999954 5554433 78999999999999999998874
No 155
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=34.23 E-value=12 Score=31.98 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=12.8
Q ss_pred HHHHHhhCCCcEEEEcCC-CCc
Q psy1565 71 YIDHCHNDQSTVYVHCNA-GIS 91 (146)
Q Consensus 71 ~i~~~~~~g~~vlVHC~~-G~~ 91 (146)
-+++.+.-.-+|-|||++ |..
T Consensus 220 ~~~e~l~lph~~h~H~nnlg~p 241 (556)
T TIGR03121 220 RANEELGLPHSIHVHCNNLGVP 241 (556)
T ss_pred HHHHhcCCCceEEEecCCCCCC
Confidence 333444445789999966 443
No 156
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=33.99 E-value=8 Score=31.87 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCC
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNA 88 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~ 88 (146)
+-.-+.-+++.++-...|-+||+.
T Consensus 217 Ii~glaevnE~L~lphsIHlH~N~ 240 (575)
T COG1229 217 IIKGLAEVNERLGLPHSIHLHCNN 240 (575)
T ss_pred HHHHHHHHHHhhCCCcceEecccc
Confidence 444556677888888999999965
No 157
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=33.99 E-value=48 Score=24.88 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=25.8
Q ss_pred CCCcEEEEcCCCCchhHHHH--HHHHHHHcCCCHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIV--IAYIMKHMGLDLAQ 111 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~--~aylm~~~~~~~~~ 111 (146)
..++++|--.+|-|-|.+++ ++|++...+.++.+
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~ 47 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPER 47 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGG
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHH
Confidence 46899999999999998888 67788766655544
No 158
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=33.77 E-value=1.8e+02 Score=22.65 Aligned_cols=71 Identities=4% Similarity=0.041 Sum_probs=42.4
Q ss_pred CCeEEEEEEecCCCCC-----CccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy1565 44 KEGVTEGKTIYDEPGY-----NLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKK 118 (146)
Q Consensus 44 ~~i~~~~~p~~D~~~~-----~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~ 118 (146)
.++...+.|..|.... +....++..++..+.+... ..+=++|.-|+.-.-. .+|+... +++++|.+.++.
T Consensus 34 t~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e-~~~~~~~vvGvHPaE~---~~l~e~~-~~peea~e~m~~ 108 (285)
T COG1831 34 THLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREE-GPVEAYAVVGVHPAEV---SRLAEAG-RSPEEALEEMRH 108 (285)
T ss_pred cEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHh-cCceeEEEeccCHHHH---HHHHHhc-cChHHHHHHHHH
Confidence 3455666666665533 2333344444444444433 5566788889875433 6677755 889888777765
Q ss_pred H
Q psy1565 119 V 119 (146)
Q Consensus 119 ~ 119 (146)
.
T Consensus 109 ~ 109 (285)
T COG1831 109 A 109 (285)
T ss_pred H
Confidence 3
No 159
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.69 E-value=96 Score=21.08 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=44.6
Q ss_pred CCCeEEEEEEecCCCCCCccccHHHHHHHHHHHh-hCCCcEEEEcCCCCchhHHHHHHHHHHHcC---------CCHHHH
Q psy1565 43 TKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCH-NDQSTVYVHCNAGISRSATIVIAYIMKHMG---------LDLAQA 112 (146)
Q Consensus 43 ~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~-~~g~~vlVHC~~G~~RS~~~~~aylm~~~~---------~~~~~a 112 (146)
..|+.|-.+.+...-...+. .+-..++-.+.++ ..+.+.-.-| -|..||--++ -|++..+| .+-++|
T Consensus 57 k~GLkYAAvEVPsGVRGRma-liGPLIEeadAAIi~~~~p~~FGC-iGC~RTNEl~-~ylvR~k~iPiLelkYP~s~Eea 133 (152)
T COG4050 57 KRGLKYAAVEVPSGVRGRMA-LIGPLIEEADAAIIVEEAPFGFGC-IGCARTNELC-VYLVRRKGIPILELKYPRSEEEA 133 (152)
T ss_pred cccceeeEEecCCCccceee-eeehhhhhcceeeEeccCCcccce-ecccccchHH-HHHhhhcCCceEEEeCCCcHHHH
Confidence 46888888887765533322 2222222222222 2234433334 4667998877 67888776 456789
Q ss_pred HHHHHhHC
Q psy1565 113 HDLVKKVR 120 (146)
Q Consensus 113 ~~~vr~~r 120 (146)
..+|++.+
T Consensus 134 ~~~VnkI~ 141 (152)
T COG4050 134 IDFVNKIA 141 (152)
T ss_pred HHHHHHHH
Confidence 99998876
No 160
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=33.27 E-value=34 Score=27.53 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 80 STVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
.+|+|||..|. ||... +..|.. .|.
T Consensus 333 ~~Ivv~C~sG~-RS~~A-a~~L~~-~G~ 357 (370)
T PRK05600 333 DNVVVYCASGI-RSADF-IEKYSH-LGH 357 (370)
T ss_pred CcEEEECCCCh-hHHHH-HHHHHH-cCC
Confidence 48999999995 77653 354443 443
No 161
>PRK02947 hypothetical protein; Provisional
Probab=32.96 E-value=76 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHH
Q psy1565 63 KHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 63 ~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~ 97 (146)
+.+.++++.+.+.+.++++|++. |.|.|+.++
T Consensus 24 e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA 55 (246)
T PRK02947 24 EAIEKAADLIADSIRNGGLIYVF---GTGHSHILA 55 (246)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHH
Confidence 45888899999999899999987 677777665
No 162
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=32.16 E-value=1e+02 Score=24.26 Aligned_cols=57 Identities=16% Similarity=0.367 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHHHhh--CCCcEEEEcCCCCchhHHHHHHHHHHHcCCC-HHH----HHHHHHhHCC
Q psy1565 62 SKHFPDCFTYIDHCHN--DQSTVYVHCNAGISRSATIVIAYIMKHMGLD-LAQ----AHDLVKKVRP 121 (146)
Q Consensus 62 ~~~~~~~~~~i~~~~~--~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~-~~~----a~~~vr~~rp 121 (146)
.+.|.+.-.++.+..+ .+++|...|.+|+ |.-- +.+||.. .|.. ..+ .+.|+++..+
T Consensus 153 ~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RCEK-as~~m~~-~GF~eVyhL~GGIl~Y~e~~~~ 216 (308)
T COG1054 153 IETFREFPAWVEENLDLLKDKKVVMYCTGGI-RCEK-ASAWMKE-NGFKEVYHLEGGILKYLEDVGT 216 (308)
T ss_pred hhhhhhhHHHHHHHHHhccCCcEEEEcCCce-eehh-hHHHHHH-hcchhhhcccchHHHHhhhcCc
Confidence 3457777777776554 5689999999999 5433 3354444 4422 111 3566665543
No 163
>PRK15043 transcriptional regulator MirA; Provisional
Probab=31.78 E-value=1.2e+02 Score=23.16 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=45.1
Q ss_pred CCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCC------------CCCCCHHHHHHHHHHHHHhc
Q psy1565 78 DQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRP------------CIKPNPGFLRQLKEWEQKHL 141 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp------------~~~p~~~~~~~L~~~~~~l~ 141 (146)
.|+++|+=|..|-+++.....|++....|+...--=.-+..-+| ...+++.+.+++..|.+.-.
T Consensus 161 ~~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~~v~vl~~~~~~~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~~~g~ 236 (243)
T PRK15043 161 QGKDALVVGWNIHDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGH 236 (243)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHHHHhcCCceEEEeCCcccccChhhcCCCeEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 46789999999999999999888888777543211111222233 45678899999999987653
No 164
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=31.56 E-value=40 Score=25.27 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=18.5
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCchhHHHHHH
Q psy1565 68 CFTYIDHCHNDQSTVYVHCNAGISRSATIVIA 99 (146)
Q Consensus 68 ~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~a 99 (146)
+.++++-+.+-+.+|.|||+....+.--++-.
T Consensus 113 F~~ql~lA~~~~~pv~iH~r~a~~~~l~il~~ 144 (255)
T PF01026_consen 113 FERQLELAKELNLPVSIHCRKAHEELLEILKE 144 (255)
T ss_dssp HHHHHHHHHHHTCEEEEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcEEEecCCcHHHHHHHHHh
Confidence 34444444445677777777777655544433
No 165
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=31.51 E-value=1.3e+02 Score=20.64 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=16.0
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHH
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMK 103 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~ 103 (146)
..+.+|+|+|..| .+| ..++..|..
T Consensus 47 ~~~~~vVv~c~~g-~~a-~~aa~~L~~ 71 (145)
T cd01535 47 PAAERYVLTCGSS-LLA-RFAAADLAA 71 (145)
T ss_pred CCCCCEEEEeCCC-hHH-HHHHHHHHH
Confidence 3568999999886 344 444454443
No 166
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=31.32 E-value=53 Score=20.14 Aligned_cols=18 Identities=22% Similarity=0.648 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHHH
Q psy1565 80 STVYVHCNAGISRSATIV 97 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~ 97 (146)
.+|++-|..|.|-|-.+.
T Consensus 1 ~~ilivC~~G~~tS~~l~ 18 (89)
T cd05566 1 KKILVACGTGVATSTVVA 18 (89)
T ss_pred CEEEEECCCCccHHHHHH
Confidence 378999999999775555
No 167
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=31.29 E-value=56 Score=24.99 Aligned_cols=33 Identities=9% Similarity=0.030 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHH
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~ 97 (146)
..-+.++|+-+.+.+.||.|||+.-....-.+.
T Consensus 111 ~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL 143 (256)
T COG0084 111 EEVFEAQLELAKELNLPVIIHTRDAHEDTLEIL 143 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccHHHHHHHH
Confidence 445566777777778899999877554444333
No 168
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=31.24 E-value=1e+02 Score=17.27 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=20.7
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHC
Q psy1565 88 AGISRSATIVIAYIMKHMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 88 ~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~r 120 (146)
.|.+|...-++. -+...|++|+.--..++..|
T Consensus 17 tgLd~etL~ici-~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 17 TGLDRETLSICI-ELCENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCCHHHHHHHH-HHHHCCCCHHHHHHHHHHhC
Confidence 488988665544 44448999886555555443
No 169
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=31.13 E-value=81 Score=26.29 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=17.1
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHH
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIM 102 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm 102 (146)
..+++++++|..|. ||...+ .+|.
T Consensus 447 ~~~~~iivyC~~G~-rS~~aa-~~L~ 470 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQA-LYLR 470 (482)
T ss_pred CCCCeEEEECCCCH-HHHHHH-HHHH
Confidence 45689999999997 775544 4443
No 170
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=30.99 E-value=61 Score=29.00 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHhHC
Q psy1565 79 QSTVYVHCNAGISRSATIVIAYIMK----HMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 79 g~~vlVHC~~G~~RS~~~~~aylm~----~~~~~~~~a~~~vr~~r 120 (146)
+.++.||...|. +++++.-+|+ ..|+++++|++.+++..
T Consensus 296 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~wd~Aw~iv~~~~ 338 (794)
T TIGR02093 296 PKKVAIQLNDTH---PALAIPELMRLLIDEEGMDWDEAWDITTKTF 338 (794)
T ss_pred CcceEEEecCCc---hHHHHHHHHHHHHHhcCCCHHHHHHHHHhhe
Confidence 489999999999 4666665664 34999999999999875
No 171
>PF15195 TMEM210: TMEM210 family
Probab=30.85 E-value=78 Score=20.55 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEcCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy1565 83 YVHCNAGISRSATIVIAYIMKHMGLDLAQAHD 114 (146)
Q Consensus 83 lVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~ 114 (146)
|.-|+-|.+|-+.+++...+.--+.+-.-|+-
T Consensus 2 yCeCsLGLSREALIALlVVLAgv~ascfcalv 33 (116)
T PF15195_consen 2 YCECSLGLSREALIALLVVLAGVSASCFCALV 33 (116)
T ss_pred cceeecccCHHHHHHHHHHHhccchhHHHHHH
Confidence 45799999999887755444333444444433
No 172
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.04 E-value=54 Score=19.95 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHHH
Q psy1565 81 TVYVHCNAGISRSATIV 97 (146)
Q Consensus 81 ~vlVHC~~G~~RS~~~~ 97 (146)
+++|=|.+|.|-|.++.
T Consensus 1 kilvvC~~G~~tS~ll~ 17 (86)
T cd05563 1 KILAVCGSGLGSSLMLK 17 (86)
T ss_pred CEEEECCCCccHHHHHH
Confidence 48999999999776655
No 173
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=29.72 E-value=14 Score=31.42 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=12.0
Q ss_pred CCcccchhhhHHHHHHhccccc
Q psy1565 7 WGLPTFAGTFHHAIISVGRSDR 28 (146)
Q Consensus 7 w~~~~l~~~~i~~l~~~g~~~~ 28 (146)
|.+...|+.||+ ++|-|++.-
T Consensus 166 w~l~~tk~~giK-~vnpgG~~a 186 (541)
T cd01304 166 WTLKASKGYGIK-VVNPGGTEA 186 (541)
T ss_pred HHHHhccceEEE-EECCCchhh
Confidence 666666666666 444444333
No 174
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=29.69 E-value=28 Score=28.23 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcC----CCHHHHHHH
Q psy1565 64 HFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMG----LDLAQAHDL 115 (146)
Q Consensus 64 ~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~----~~~~~a~~~ 115 (146)
.|-..++....-.-.|+||.| +..+-+|+..+++.|-.+..| |+..+|.+.
T Consensus 56 ~FyasvE~~~~p~L~~kPv~V-~~~~~~~~~V~a~sy~AR~~GV~~gM~~~~A~~l 110 (404)
T cd01701 56 CFFVSVSIRNRPDLKGKPVAV-CHGKGPNSEIASCNYEARSYGIKNGMWVGQAKKL 110 (404)
T ss_pred hHHHHHHhhhCccccCCCEEE-ecCCCCCeEEEecCHHHHhcCCCCCCcHHHHHHH
Confidence 355555555555556788888 444444676777999999875 556665554
No 175
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=29.63 E-value=1.4e+02 Score=23.71 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=26.3
Q ss_pred CCCCchhHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy1565 87 NAGISRSATIVIAYIMKHMGLDLAQAHDLVKK 118 (146)
Q Consensus 87 ~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~ 118 (146)
..|.+|...-+ +.+++...++.++|++.|++
T Consensus 284 KfG~~~~~~~~-s~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 284 KFGFGRATDHA-SIDIRSGRITREEAIELVKE 314 (343)
T ss_pred hcCCCcCchHH-HHHHHcCCCCHHHHHHHHHH
Confidence 57888876666 66888889999999999999
No 176
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=29.62 E-value=1.1e+02 Score=22.80 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcC
Q psy1565 66 PDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMG 106 (146)
Q Consensus 66 ~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~ 106 (146)
+-+.+.+.+.....+..+--|-+|--++..+.+.|.+...|
T Consensus 104 ~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~g 144 (209)
T TIGR02584 104 NFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFG 144 (209)
T ss_pred HHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhC
Confidence 34444555554445666666677777888888888887665
No 177
>PRK10425 DNase TatD; Provisional
Probab=29.36 E-value=68 Score=24.35 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCCCCchh
Q psy1565 66 PDCFTYIDHCHNDQSTVYVHCNAGISRS 93 (146)
Q Consensus 66 ~~~~~~i~~~~~~g~~vlVHC~~G~~RS 93 (146)
.-+..+++-+.+.+.||.|||+.-....
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a~~~~ 135 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDAHERF 135 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCchHHH
Confidence 3344455555566788888888655443
No 178
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.10 E-value=2.4e+02 Score=23.11 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHhhCCCcEEEEcCCCCchh-HH--HHHHHHHHHcCCCHHHHHHHHH
Q psy1565 71 YIDHCHNDQSTVYVHCNAGISRS-AT--IVIAYIMKHMGLDLAQAHDLVK 117 (146)
Q Consensus 71 ~i~~~~~~g~~vlVHC~~G~~RS-~~--~~~aylm~~~~~~~~~a~~~vr 117 (146)
-++...+.|-+|.+.+..|.+.+ .. +.+.+ +...+|++.||++-+-
T Consensus 298 ~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l-~~~~gmtp~EaL~a~T 346 (406)
T COG1228 298 PARKLIDAGVKVAIGTDHNPGTSHGSLALEMAL-AVRLGMTPEEALKAAT 346 (406)
T ss_pred hHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHH-HHHcCCCHHHHHHHHH
Confidence 36677778999999999999984 33 23443 3445799999987654
No 179
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=29.06 E-value=2.2e+02 Score=23.47 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhCC--CcEEE---EcCCCCchhHHHHHHHH---------------------------------HHHcCC
Q psy1565 66 PDCFTYIDHCHNDQ--STVYV---HCNAGISRSATIVIAYI---------------------------------MKHMGL 107 (146)
Q Consensus 66 ~~~~~~i~~~~~~g--~~vlV---HC~~G~~RS~~~~~ayl---------------------------------m~~~~~ 107 (146)
++..+...+.++.+ .+|.| .|.+-++|-++.+.+.. +.....
T Consensus 302 Del~~I~~EiVR~~~ldrv~igLDfFDasInRIaAwviG~rn~qKAll~ALL~p~~~L~~~e~~gd~t~rlAl~Ee~K~~ 381 (417)
T PF06134_consen 302 DELFEIAKEIVRNDALDRVHIGLDFFDASINRIAAWVIGTRNMQKALLKALLEPTEALKEAEDEGDFTERLALLEEFKSL 381 (417)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEE----TSS-HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCTT-HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhcCcccceeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 35666667777665 35544 68899999887554321 111235
Q ss_pred CHHHHHHHHHhHCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy1565 108 DLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDS 144 (146)
Q Consensus 108 ~~~~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~~~~ 144 (146)
++-..+++...+. ++-....++..+.+||+..+.++
T Consensus 382 P~gaVwd~yC~~~-~vP~~~~w~~~v~~YE~~Vl~kR 417 (417)
T PF06134_consen 382 PFGAVWDYYCERN-GVPVGEDWLDEVKQYEKEVLSKR 417 (417)
T ss_dssp SHHHHHHHHHHHT-TS-STTTHHHHHHHHHHHTCCC-
T ss_pred CHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHhcC
Confidence 5556677777777 77777899999999999988764
No 180
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=28.67 E-value=1.5e+02 Score=18.84 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHH---------HHHHHHHhHCCC
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLA---------QAHDLVKKVRPC 122 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~---------~a~~~vr~~rp~ 122 (146)
++.+.++|+...+.|+++++.-+++ +||..-.+..| ...|.+.. .+..++++..+.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~ 80 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKGG 80 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCCC
Confidence 6778889999888888888876554 46655555555 44554432 256777775443
No 181
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=28.61 E-value=65 Score=25.22 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=13.6
Q ss_pred hhCCCcEEEEcCCCCchhHH
Q psy1565 76 HNDQSTVYVHCNAGISRSAT 95 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS~~ 95 (146)
+.++++|+++|..|+ |++.
T Consensus 266 i~~~~~iv~yC~sG~-~A~~ 284 (320)
T PLN02723 266 ISLDSPIVASCGTGV-TACI 284 (320)
T ss_pred CCCCCCEEEECCcHH-HHHH
Confidence 345689999998876 4443
No 182
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=28.60 E-value=1.6e+02 Score=24.98 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=32.4
Q ss_pred CCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCC-chhHHHHHHHHHHHcCC
Q psy1565 55 DEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGI-SRSATIVIAYIMKHMGL 107 (146)
Q Consensus 55 D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~-~RS~~~~~aylm~~~~~ 107 (146)
+...|...+.+.++++.|.+++.++.+|+|.+..-. |=+++.++...+...|.
T Consensus 30 ~l~~p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~ 83 (539)
T TIGR00644 30 DLPDPFLLKDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGV 83 (539)
T ss_pred hcCChhhcCCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCC
Confidence 333344344588999999999999999988774422 23344444444444443
No 183
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=28.58 E-value=52 Score=21.06 Aligned_cols=29 Identities=24% Similarity=0.609 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCchhHHHHH--HHHHHHcCCC
Q psy1565 80 STVYVHCNAGISRSATIVI--AYIMKHMGLD 108 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~~--aylm~~~~~~ 108 (146)
.+||+=|-+|+|-|.++.. =-.+..+|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 4799999999998877652 2233444554
No 184
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=28.51 E-value=2.3e+02 Score=23.22 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCC-CCchhHHHHHHHHHH--------HcCCCHHHHHHHHHh
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNA-GISRSATIVIAYIMK--------HMGLDLAQAHDLVKK 118 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~-G~~RS~~~~~aylm~--------~~~~~~~~a~~~vr~ 118 (146)
+.++.+.++-+...|-++.+||.. +-+.+.+.++...+. +=||..+|.+..|.+
T Consensus 334 It~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~~~~~l~kpg~g~d~~~~~~~n 396 (408)
T TIGR01502 334 VNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATGARQVLAKPGMGVDEGMMIVKN 396 (408)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEecCCCCcchhHHHHHH
Confidence 566667777777788999999865 444443333222111 127777777665544
No 185
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=28.23 E-value=1.3e+02 Score=17.42 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhHC
Q psy1565 97 VIAYIMKHMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 97 ~~aylm~~~~~~~~~a~~~vr~~r 120 (146)
|+.-+....++|..+|++.+.+..
T Consensus 7 ~Ie~~A~~~~~s~~ea~~~~~~~~ 30 (62)
T PF12668_consen 7 CIEEFAKKLNISGEEAYNYFKRSG 30 (62)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHcC
Confidence 445556678999999999998754
No 186
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=28.18 E-value=84 Score=25.06 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=48.2
Q ss_pred chhhhHHHHH---HhccccccccCcccCCCCCCCCCCeEEEEEEecCCCCCC-------ccccHHHHHHHHHHHhhCCCc
Q psy1565 12 FAGTFHHAII---SVGRSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYN-------LSKHFPDCFTYIDHCHNDQST 81 (146)
Q Consensus 12 l~~~~i~~l~---~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~-------~~~~~~~~~~~i~~~~~~g~~ 81 (146)
.++..|+.|. +.|++---..+..+.-....+.+|++|.++.+...+.++ =...+..+++..+.+-..|-+
T Consensus 40 ikGaDis~l~~lE~~Gvkf~d~ng~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmK 119 (403)
T COG3867 40 IKGADISSLIELENSGVKFFDTNGVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMK 119 (403)
T ss_pred hccccHHHHHHHHHcCceEEccCChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcE
Confidence 4566666665 334433333333343445577899999999986655222 112378899999999889989
Q ss_pred EEEE
Q psy1565 82 VYVH 85 (146)
Q Consensus 82 vlVH 85 (146)
||+-
T Consensus 120 Vl~d 123 (403)
T COG3867 120 VLLD 123 (403)
T ss_pred EEee
Confidence 9875
No 187
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=27.86 E-value=82 Score=19.15 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=13.4
Q ss_pred hhCCCcEEEEcCCCCchhHH
Q psy1565 76 HNDQSTVYVHCNAGISRSAT 95 (146)
Q Consensus 76 ~~~g~~vlVHC~~G~~RS~~ 95 (146)
+..+++|++.|..|. |+..
T Consensus 48 ~~~~~~vvl~c~~g~-~a~~ 66 (90)
T cd01524 48 LPKDKEIIVYCAVGL-RGYI 66 (90)
T ss_pred cCCCCcEEEEcCCCh-hHHH
Confidence 355689999999874 4433
No 188
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=27.81 E-value=1.7e+02 Score=21.33 Aligned_cols=27 Identities=19% Similarity=0.050 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCc
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGIS 91 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~ 91 (146)
+.++.+.+..+...|-++.+||..|-+
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 667777888888889999999975543
No 189
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=27.57 E-value=74 Score=24.92 Aligned_cols=13 Identities=62% Similarity=1.014 Sum_probs=10.4
Q ss_pred CCCcEEEEcCCCC
Q psy1565 78 DQSTVYVHCNAGI 90 (146)
Q Consensus 78 ~g~~vlVHC~~G~ 90 (146)
.|..||.||..|.
T Consensus 118 ~g~~ILT~~~Sg~ 130 (303)
T TIGR00524 118 DGDTVLTHCNAGA 130 (303)
T ss_pred CCCEEEEecCCcc
Confidence 5678999998754
No 190
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=27.47 E-value=1.9e+02 Score=21.73 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=28.2
Q ss_pred eEEEEEEecCCCCCCc---cccHHHHHHHHHHHhhCCCcEEEEcC
Q psy1565 46 GVTEGKTIYDEPGYNL---SKHFPDCFTYIDHCHNDQSTVYVHCN 87 (146)
Q Consensus 46 i~~~~~p~~D~~~~~~---~~~~~~~~~~i~~~~~~g~~vlVHC~ 87 (146)
+....+|..-.+.... ...-+++++.++....+|+.|.+|=-
T Consensus 32 f~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHGY 76 (243)
T PF10096_consen 32 FSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHGY 76 (243)
T ss_pred EEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEec
Confidence 4556666544443322 22256788889999999999999963
No 191
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=27.27 E-value=54 Score=23.27 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=38.5
Q ss_pred EEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHH-----------HcCCCHHHHHHHHHhH
Q psy1565 51 KTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMK-----------HMGLDLAQAHDLVKKV 119 (146)
Q Consensus 51 ~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~-----------~~~~~~~~a~~~vr~~ 119 (146)
+|++|...-+ ++..+-+.+....++++.++|-|++=. -.|-=. +..-+++.+.+.++.+
T Consensus 42 iPL~DdDR~p---WL~~l~~~~~~~~~~~~~~vi~CSALK-------r~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R 111 (161)
T COG3265 42 IPLNDDDRWP---WLEALGDAAASLAQKNKHVVIACSALK-------RSYRDLLREANPGLRFVYLDGDFDLILERMKAR 111 (161)
T ss_pred CCCCcchhhH---HHHHHHHHHHHhhcCCCceEEecHHHH-------HHHHHHHhccCCCeEEEEecCCHHHHHHHHHhc
Confidence 6777765443 566666777777777777888885421 111111 1245677777777776
Q ss_pred CCCCCC
Q psy1565 120 RPCIKP 125 (146)
Q Consensus 120 rp~~~p 125 (146)
..-..|
T Consensus 112 ~gHFM~ 117 (161)
T COG3265 112 KGHFMP 117 (161)
T ss_pred ccCCCC
Confidence 633333
No 192
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=26.99 E-value=1.8e+02 Score=20.21 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHH
Q psy1565 63 KHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 63 ~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~ 97 (146)
+.+.++++.|.+++.+.++|++. |.|.|..++
T Consensus 17 ~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 17 EAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 34788888888888888888776 566676665
No 193
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=26.94 E-value=1.9e+02 Score=21.03 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCc-hhHHHHHHHHHH
Q psy1565 68 CFTYIDHCHNDQSTVYVHCNAGIS-RSATIVIAYIMK 103 (146)
Q Consensus 68 ~~~~i~~~~~~g~~vlVHC~~G~~-RS~~~~~aylm~ 103 (146)
+.+++.+....+.+|+|-|-.|.+ =-|.+++.+|..
T Consensus 34 va~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~ 70 (205)
T TIGR00197 34 VAQAVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKG 70 (205)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHh
Confidence 344454444456899999987766 445566666654
No 194
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=26.93 E-value=1.9e+02 Score=19.33 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=22.4
Q ss_pred HHHHhhCCCcEEEEcCCCCchhHHHHHHHHH
Q psy1565 72 IDHCHNDQSTVYVHCNAGISRSATIVIAYIM 102 (146)
Q Consensus 72 i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm 102 (146)
+.... +|+.++|....|.|.|-+.....+.
T Consensus 8 ~~~i~-~~~~~li~aptGsGKT~~~~~~~l~ 37 (169)
T PF00270_consen 8 IEAII-SGKNVLISAPTGSGKTLAYILPALN 37 (169)
T ss_dssp HHHHH-TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHH-cCCCEEEECCCCCccHHHHHHHHHh
Confidence 33444 5788999999999999887755443
No 195
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=26.49 E-value=1.7e+02 Score=22.66 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=9.7
Q ss_pred hCCCcEEEEcCC
Q psy1565 77 NDQSTVYVHCNA 88 (146)
Q Consensus 77 ~~g~~vlVHC~~ 88 (146)
..|..||.||..
T Consensus 108 ~~g~~ILTh~~S 119 (275)
T PRK08335 108 DDGDVIITHSFS 119 (275)
T ss_pred CCCCEEEEECCc
Confidence 357889999976
No 196
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=26.17 E-value=1.3e+02 Score=17.62 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=13.2
Q ss_pred hCCCcEEEEcCCCCchhHH
Q psy1565 77 NDQSTVYVHCNAGISRSAT 95 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~ 95 (146)
.++.+|+|+|..|. |+..
T Consensus 48 ~~~~~vv~~c~~~~-~a~~ 65 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSAR 65 (89)
T ss_pred CCCCeEEEEeCCCc-hHHH
Confidence 46689999999863 4433
No 197
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.10 E-value=1.8e+02 Score=23.32 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=18.1
Q ss_pred hCCCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q psy1565 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGL 107 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~ 107 (146)
.++.+|+|+|..|. ||.. ++. .+...|.
T Consensus 55 ~~~~~IvvyC~~G~-rs~~-aa~-~L~~~G~ 82 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH-AAA-TLRELGY 82 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH-HHH-HHHHcCC
Confidence 46789999999875 6654 333 3444443
No 198
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=25.49 E-value=1.5e+02 Score=21.79 Aligned_cols=20 Identities=5% Similarity=0.290 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCchhHHHHHH
Q psy1565 80 STVYVHCNAGISRSATIVIA 99 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~~a 99 (146)
.+++||...|.|.|-.+-+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai 54 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAI 54 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 58999999999999876644
No 199
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=25.33 E-value=1.1e+02 Score=23.75 Aligned_cols=31 Identities=6% Similarity=-0.124 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCC--CchhHH
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAG--ISRSAT 95 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G--~~RS~~ 95 (146)
+.++.+.++.+...|-++.+||..+ ++++++
T Consensus 243 i~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~ 275 (307)
T TIGR01927 243 PAKLRDLAQKAHRLGLQAVFSSVFESSIALGQL 275 (307)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccchHHHHHHH
Confidence 6777888888888999999999654 444443
No 200
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.87 E-value=2.8e+02 Score=21.11 Aligned_cols=84 Identities=12% Similarity=-0.002 Sum_probs=47.5
Q ss_pred EEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHH---------------cCCCHHHHHH
Q psy1565 50 GKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKH---------------MGLDLAQAHD 114 (146)
Q Consensus 50 ~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~---------------~~~~~~~a~~ 114 (146)
.+-+.|...--.+..+.+.+..+++...++.++-+||.+-.|=+.+-+.+.+-.- .+.+.++.+.
T Consensus 154 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~ 233 (266)
T cd07944 154 VFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLD 233 (266)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHH
Confidence 3555576655555556777777776655457899999887765555443322110 1245566666
Q ss_pred HHHhHCCCCCCCHHHHHHHH
Q psy1565 115 LVKKVRPCIKPNPGFLRQLK 134 (146)
Q Consensus 115 ~vr~~rp~~~p~~~~~~~L~ 134 (146)
.++... ....+...+..+.
T Consensus 234 ~l~~~~-~~~~dl~~l~~~~ 252 (266)
T cd07944 234 YLNNKF-GKKYNLEPVLELI 252 (266)
T ss_pred HHHHhh-ccCCCHHHHHHHH
Confidence 666653 3344444444333
No 201
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=24.85 E-value=2.8e+02 Score=22.01 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=32.9
Q ss_pred EEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHH
Q psy1565 50 GKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 50 ~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~ 97 (146)
.+-+.|....-.++.+.+.+..+++......+|-+||.+-.|=+.+-+
T Consensus 159 ~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANs 206 (333)
T TIGR03217 159 CVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANS 206 (333)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHH
Confidence 456667765555666777777777766555789999988666554444
No 202
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=24.56 E-value=1.9e+02 Score=18.28 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcC
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCN 87 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~ 87 (146)
+.++.+.+.-+...|-++.+||.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 77788888888899999999996
No 203
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=24.44 E-value=2e+02 Score=22.72 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=32.7
Q ss_pred hCCCcEEEEcCCCCc-hhHHHHHHHHHHHcC----CCHHHHHHHHHhHCCCCCC
Q psy1565 77 NDQSTVYVHCNAGIS-RSATIVIAYIMKHMG----LDLAQAHDLVKKVRPCIKP 125 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~-RS~~~~~aylm~~~~----~~~~~a~~~vr~~rp~~~p 125 (146)
..|-+|+.|...+++ ++|+ +-++...| .+++++.+.+.+......+
T Consensus 101 ~~G~~V~kHG~~~~~s~~Gs---advLe~lGi~~~~~~~~~~~~l~~~g~~fl~ 151 (339)
T PRK00188 101 AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLSPEQVARCLEEVGIGFLF 151 (339)
T ss_pred hCCCEEEEECCCCCCCCcCH---HHHHHHcCCCCCCCHHHHHHHHHHcCcEEee
Confidence 468999999998887 6664 34556565 5677888888876544333
No 204
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=24.42 E-value=1.5e+02 Score=25.16 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=32.6
Q ss_pred EEEEEe-cCCCCCCccccHHHHHHHHHHHhhCCC-cEEEEc-CCCCchhHHHHHHHHHH
Q psy1565 48 TEGKTI-YDEPGYNLSKHFPDCFTYIDHCHNDQS-TVYVHC-NAGISRSATIVIAYIMK 103 (146)
Q Consensus 48 ~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~~~g~-~vlVHC-~~G~~RS~~~~~aylm~ 103 (146)
.+-+.+ .|....+ +...+...++.+.++|- +|+||| ..|..-++.-+..|+-.
T Consensus 108 lHl~GL~SdGgVHs---h~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~ 163 (501)
T TIGR01307 108 LHLMGLVSDGGVHS---HIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLEQ 163 (501)
T ss_pred eEEEEeccCCCCcc---hHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHHH
Confidence 444454 4444444 34445555666666774 899999 56888777666666544
No 205
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=24.20 E-value=1.9e+02 Score=21.10 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=19.5
Q ss_pred hCCCcEEEEcCCCCchhHHHH-HHHHHH
Q psy1565 77 NDQSTVYVHCNAGISRSATIV-IAYIMK 103 (146)
Q Consensus 77 ~~g~~vlVHC~~G~~RS~~~~-~aylm~ 103 (146)
...+.|.|+|..|.|-|.+.+ .++-+.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 456899999999999776544 444443
No 206
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=24.10 E-value=2.4e+02 Score=25.12 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCchhHHHH----HHHHHHHcCCCHHHHHHHHHhHC
Q psy1565 80 STVYVHCNAGISRSATIV----IAYIMKHMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~----~aylm~~~~~~~~~a~~~vr~~r 120 (146)
.++.+|...|.. +++ +..||...|+++++|++.+++..
T Consensus 214 ~~~~ihlNdtHp---a~ai~ElmR~L~de~gl~~~eA~eiv~~~~ 255 (713)
T PF00343_consen 214 DKVVIHLNDTHP---AFAIPELMRILMDEEGLSWDEAWEIVRKTF 255 (713)
T ss_dssp HHEEEEEESSTT---TTHHHHHHHHHHHTT---HHHHHHHHHHHE
T ss_pred cceEEeecCCcc---HHHHHHHHHHHHHHcCCCHHHHHHHHHhce
Confidence 689999999995 333 55666667999999999999863
No 207
>KOG1529|consensus
Probab=24.03 E-value=1.1e+02 Score=23.82 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=19.3
Q ss_pred HHHhhCCCcEEEEcCCCCchhHHHHHHH
Q psy1565 73 DHCHNDQSTVYVHCNAGISRSATIVIAY 100 (146)
Q Consensus 73 ~~~~~~g~~vlVHC~~G~~RS~~~~~ay 100 (146)
.+.+..+++|++-|..|++=+....+++
T Consensus 230 ~~~l~~~~p~~~sC~~Gisa~~i~~al~ 257 (286)
T KOG1529|consen 230 QKGLKLSKPVIVSCGTGISASIIALALE 257 (286)
T ss_pred hcCcccCCCEEEeeccchhHHHHHHHHH
Confidence 3444457999999999997555444443
No 208
>PRK10812 putative DNAse; Provisional
Probab=23.72 E-value=1.1e+02 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=16.3
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCc
Q psy1565 68 CFTYIDHCHNDQSTVYVHCNAGIS 91 (146)
Q Consensus 68 ~~~~i~~~~~~g~~vlVHC~~G~~ 91 (146)
+..+++-+.+.+.+|.|||+.+..
T Consensus 113 f~~ql~lA~e~~~Pv~iH~r~a~~ 136 (265)
T PRK10812 113 FRHHIQIGRELNKPVIVHTRDARA 136 (265)
T ss_pred HHHHHHHHHHhCCCeEEEeeCchH
Confidence 344455555568999999987664
No 209
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=23.63 E-value=1.1e+02 Score=25.05 Aligned_cols=33 Identities=9% Similarity=0.369 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEc--CCCCchhHHHHH
Q psy1565 66 PDCFTYIDHCHNDQSTVYVHC--NAGISRSATIVI 98 (146)
Q Consensus 66 ~~~~~~i~~~~~~g~~vlVHC--~~G~~RS~~~~~ 98 (146)
++.+.-+++..++.+-+||.- ..|+||||.+-+
T Consensus 204 ~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA 238 (404)
T COG4992 204 PEFLKALRELCDEHGALLILDEVQTGLGRTGKLFA 238 (404)
T ss_pred HHHHHHHHHHHHHhCeEEEEeccccCCCccchHHH
Confidence 455666677777778899987 789999999763
No 210
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=23.49 E-value=1.7e+02 Score=26.30 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHhHC
Q psy1565 79 QSTVYVHCNAGISRSATIVIAYIMK----HMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 79 g~~vlVHC~~G~~RS~~~~~aylm~----~~~~~~~~a~~~vr~~r 120 (146)
+.++.||.+.|. +++++.=+|+ ..|+++++|++.+++..
T Consensus 301 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~wd~Aw~iv~~~~ 343 (798)
T PRK14985 301 PDYEVIQLNDTH---PTIAIPELLRVLLDEHQLSWDDAWAITSKTF 343 (798)
T ss_pred CCCcEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhe
Confidence 378899999998 4666555554 45999999999999874
No 211
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=23.40 E-value=96 Score=23.91 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=15.4
Q ss_pred HhhCCCcEEEEcCCCCchhH
Q psy1565 75 CHNDQSTVYVHCNAGISRSA 94 (146)
Q Consensus 75 ~~~~g~~vlVHC~~G~~RS~ 94 (146)
.+++.++|+|.|-+|+|.++
T Consensus 15 ~i~~~~~ivvlTGAGiS~~S 34 (285)
T PRK05333 15 FVERHPRLFVLTGAGISTDS 34 (285)
T ss_pred HHHhCCcEEEEeCCcccccc
Confidence 34445799999999999664
No 212
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=23.03 E-value=97 Score=23.42 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=15.4
Q ss_pred HHHHHHHhhCCCcEEEEcCCC
Q psy1565 69 FTYIDHCHNDQSTVYVHCNAG 89 (146)
Q Consensus 69 ~~~i~~~~~~g~~vlVHC~~G 89 (146)
...++-+.+.|.+|.|||+.+
T Consensus 139 ~~~~~lA~~~~~Pv~iH~~~~ 159 (293)
T cd00530 139 RAAARAQKETGVPISTHTQAG 159 (293)
T ss_pred HHHHHHHHHHCCeEEEcCCCC
Confidence 345555566789999999875
No 213
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=22.99 E-value=1e+02 Score=24.08 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCC--CCchhHHHHHH
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNA--GISRSATIVIA 99 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~--G~~RS~~~~~a 99 (146)
+.++.+.++.+...|-++.+||.. |+++++++-++
T Consensus 244 i~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla 280 (322)
T PRK05105 244 LEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLA 280 (322)
T ss_pred HHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHH
Confidence 778888888888899999999844 55555554443
No 214
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=22.99 E-value=1.1e+02 Score=22.28 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=15.8
Q ss_pred HHHHHHHHhhCCCcEEEEcCCC
Q psy1565 68 CFTYIDHCHNDQSTVYVHCNAG 89 (146)
Q Consensus 68 ~~~~i~~~~~~g~~vlVHC~~G 89 (146)
+..+++.+.+.+.+|.|||..+
T Consensus 110 ~~~~~~~a~e~~~pv~iH~~~~ 131 (251)
T cd01310 110 FRAQLELAKELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHHHHHhCCCeEEEeeCc
Confidence 4445566666789999999755
No 215
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.86 E-value=98 Score=23.51 Aligned_cols=20 Identities=15% Similarity=0.589 Sum_probs=16.0
Q ss_pred CCCCchhHHHH-HHHHHHHcC
Q psy1565 87 NAGISRSATIV-IAYIMKHMG 106 (146)
Q Consensus 87 ~~G~~RS~~~~-~aylm~~~~ 106 (146)
++|+|+|...+ +++.+...|
T Consensus 10 kGGvG~TTltAnLA~aL~~~G 30 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARLG 30 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCC
Confidence 78999998877 777777766
No 216
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=22.67 E-value=1.6e+02 Score=23.61 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCc-hhHHHHHHHHHHHcC----CCHHHHHHHHHhHCCCCCCCHHHHHHHH
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGIS-RSATIVIAYIMKHMG----LDLAQAHDLVKKVRPCIKPNPGFLRQLK 134 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~-RS~~~~~aylm~~~~----~~~~~a~~~vr~~rp~~~p~~~~~~~L~ 134 (146)
+..+..|+-. ..|-+|..|....++ +||+ +-++...| .+++++.+.+.+......+-+.|-..+.
T Consensus 93 iSt~aA~v~A--~~Gv~VaKHGnrs~sSksGs---aDvleaLGv~l~~~~e~~~~~l~~~g~~FlfAp~~hp~~k 162 (338)
T COG0547 93 ISTAAAIVAA--AAGVPVAKHGNRSVSSKSGS---ADVLEALGVNLELSPEQAARALEETGIGFLFAPAYHPAMK 162 (338)
T ss_pred chHHHHHHHH--hCCCcEEeECCCCCCCCCcH---HHHHHHcCCCCCCCHHHHHHHHHhcCeEEEEccccCHHHH
Confidence 4455566555 457899999988887 8888 55666664 6788888888888755444444444333
No 217
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=22.67 E-value=1.5e+02 Score=20.46 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=20.0
Q ss_pred CCCCchhHHHHHHHHHHHcCCCHHHH
Q psy1565 87 NAGISRSATIVIAYIMKHMGLDLAQA 112 (146)
Q Consensus 87 ~~G~~RS~~~~~aylm~~~~~~~~~a 112 (146)
..|.||+.+++++.+..+...+.++|
T Consensus 28 ~~~lG~~ev~vaa~~ygqa~~~~~ea 53 (151)
T COG1513 28 ADGLGLAEVFVAAALYGQAALPADEA 53 (151)
T ss_pred HhhcCccHHHHHHHHHhhccCCHHHH
Confidence 56899999999887766666666665
No 218
>KOG0781|consensus
Probab=22.64 E-value=1.8e+02 Score=24.76 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=22.2
Q ss_pred HHHHHHHhhCCCcEEEEc---CCCCchhHHHH-HHHHHHHcC
Q psy1565 69 FTYIDHCHNDQSTVYVHC---NAGISRSATIV-IAYIMKHMG 106 (146)
Q Consensus 69 ~~~i~~~~~~g~~vlVHC---~~G~~RS~~~~-~aylm~~~~ 106 (146)
++-|..+.++ ++.||-| -+|+|-|..++ ++|-+..++
T Consensus 366 LRdI~sar~~-krPYVi~fvGVNGVGKSTNLAKIayWLlqNk 406 (587)
T KOG0781|consen 366 LRDIMSARRR-KRPYVISFVGVNGVGKSTNLAKIAYWLLQNK 406 (587)
T ss_pred HHHHHHHHhc-CCCeEEEEEeecCccccchHHHHHHHHHhCC
Confidence 3444444444 3555544 67899999988 555555454
No 219
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=22.53 E-value=2e+02 Score=17.76 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=21.5
Q ss_pred CCCchhHHHH--HHHHHHH-cCCCHHHHHHHHHhHCCC
Q psy1565 88 AGISRSATIV--IAYIMKH-MGLDLAQAHDLVKKVRPC 122 (146)
Q Consensus 88 ~G~~RS~~~~--~aylm~~-~~~~~~~a~~~vr~~rp~ 122 (146)
.|.++...-. -+|-+.+ .+.+..+|++.+++..+.
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~ 63 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPD 63 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Confidence 4555443322 4454444 478999999999997755
No 220
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=22.53 E-value=1.9e+02 Score=18.22 Aligned_cols=25 Identities=8% Similarity=0.289 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHhhCCCcEEEEcCC
Q psy1565 64 HFPDCFTYIDHCHNDQSTVYVHCNA 88 (146)
Q Consensus 64 ~~~~~~~~i~~~~~~g~~vlVHC~~ 88 (146)
.+..+.+++......+++++|.|..
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~ 37 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPS 37 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCc
Confidence 4666777777766567899999976
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=22.44 E-value=2.5e+02 Score=18.80 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=22.9
Q ss_pred HHHHHHHhHCCCCCCCHHHHHHHHHHHHHhcC
Q psy1565 111 QAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLK 142 (146)
Q Consensus 111 ~a~~~vr~~rp~~~p~~~~~~~L~~~~~~l~~ 142 (146)
..++.+.++.| +.....|+..|.+|.-.+-.
T Consensus 73 ~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 73 KLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcC
Confidence 34566677776 77778999999999766544
No 222
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=22.34 E-value=3.4e+02 Score=21.51 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=32.4
Q ss_pred EEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHH
Q psy1565 50 GKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIV 97 (146)
Q Consensus 50 ~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~ 97 (146)
.+-+.|....-.++.+.+.++.+++....+.+|-+||.+-.|=+.+-+
T Consensus 160 ~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANs 207 (337)
T PRK08195 160 CVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANS 207 (337)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHH
Confidence 456667765555666777777777766556789999987666544444
No 223
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=22.23 E-value=2.6e+02 Score=24.15 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=32.0
Q ss_pred EEEEEe-cCCCCCCccccHHHHHHHHHHHhhCC-CcEEEEc-CCCCchhHHHHHHHHHH
Q psy1565 48 TEGKTI-YDEPGYNLSKHFPDCFTYIDHCHNDQ-STVYVHC-NAGISRSATIVIAYIMK 103 (146)
Q Consensus 48 ~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~~~g-~~vlVHC-~~G~~RS~~~~~aylm~ 103 (146)
.+-+.+ .|+...+ ++.-...+++.+.++| .+|+||| ..|..-.+.-+..|+-.
T Consensus 129 lHl~GL~SdGGVHS---h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~p~S~~~yl~~ 184 (558)
T PLN02538 129 LHLIGLLSDGGVHS---RLDQLQLLLKGAAERGAKRIRVHVLTDGRDVPDGSSVGFVET 184 (558)
T ss_pred eEEEEeccCCCccc---HHHHHHHHHHHHHHcCCCeEEEEEEcCCCCCCcccHHHHHHH
Confidence 444554 4554444 3444455556666677 5999999 56887666555566544
No 224
>PTZ00138 small nuclear ribonucleoprotein; Provisional
Probab=22.12 E-value=1.1e+02 Score=19.55 Aligned_cols=25 Identities=8% Similarity=0.006 Sum_probs=18.1
Q ss_pred HHHHHHHhhCCCcEEEEcCCCCchh
Q psy1565 69 FTYIDHCHNDQSTVYVHCNAGISRS 93 (146)
Q Consensus 69 ~~~i~~~~~~g~~vlVHC~~G~~RS 93 (146)
+..+...++...+|.|||..|-+|.
T Consensus 16 ~~~~~~~~~~~~~V~i~l~~~~~r~ 40 (89)
T PTZ00138 16 INQIFRFFTEKTRVQIWLYDHPNLR 40 (89)
T ss_pred HHHHHHHhcCCcEEEEEEEeCCCcE
Confidence 4555566667789999998876653
No 225
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=22.09 E-value=1.9e+02 Score=23.77 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhCC-CcEEEEcC----------------CCCchhHHHHHHHHHHHcCCCHH
Q psy1565 65 FPDCFTYIDHCHNDQ-STVYVHCN----------------AGISRSATIVIAYIMKHMGLDLA 110 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g-~~vlVHC~----------------~G~~RS~~~~~aylm~~~~~~~~ 110 (146)
.+.+.+.+.++.++| .=+-|||. .=+||.|++.++|++.....+|.
T Consensus 140 ~d~~~~~v~~qa~~GVdfmTIHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENpl 202 (432)
T COG0422 140 EDDFFDTVEKQAEQGVDFMTIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPL 202 (432)
T ss_pred HHHHHHHHHHHHHhCCcEEEeehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCch
Confidence 456667777777776 56778881 23689999999999997765543
No 226
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=22.07 E-value=2.5e+02 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=18.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHhHC
Q psy1565 98 IAYIMKHMGLDLAQAHDLVKKVR 120 (146)
Q Consensus 98 ~aylm~~~~~~~~~a~~~vr~~r 120 (146)
+..+|...|++.++|++.+++..
T Consensus 232 V~vl~~~~g~s~~eA~~~~~~~~ 254 (303)
T cd00687 232 VKVLAEEHGLSLEEAISVVRDMH 254 (303)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 34578888999999998887763
No 227
>COG3654 Doc Prophage maintenance system killer protein [General function prediction only]
Probab=22.02 E-value=2.7e+02 Score=19.12 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=41.9
Q ss_pred ccccHHHHHHHHHHHhhCCCcEEEEcC-CCCchhHHHHHHHHHHHcC----CCHHHHHHHHHhHC-CCCCCCHHHHHHHH
Q psy1565 61 LSKHFPDCFTYIDHCHNDQSTVYVHCN-AGISRSATIVIAYIMKHMG----LDLAQAHDLVKKVR-PCIKPNPGFLRQLK 134 (146)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~g~~vlVHC~-~G~~RS~~~~~aylm~~~~----~~~~~a~~~vr~~r-p~~~p~~~~~~~L~ 134 (146)
..+.|+.+...+-...++ |+. .|.=||+..++...+..+| ++.++..+.+.+.- -.-..-..+.+++.
T Consensus 50 ~~dvfelAA~~~~~l~kn------H~F~dgNKRtal~a~~~FL~lNGy~l~a~~d~~~~~~~~la~~~E~d~~~~~~w~R 123 (132)
T COG3654 50 YPDVFELAAAYFVALIKN------HAFADGNKRTALAAALLFLLLNGYELTASQDELVDMIVDLARAGETDEAQLAQWLR 123 (132)
T ss_pred CCcHHHHHHHHHHHHHhc------CCCCCccHHHHHHHHHHHHHhCCeeeeccHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 445566666666665554 663 4667999988666666666 55555555555433 22222334445555
Q ss_pred HHHHHhc
Q psy1565 135 EWEQKHL 141 (146)
Q Consensus 135 ~~~~~l~ 141 (146)
++..+++
T Consensus 124 ~~~~~~~ 130 (132)
T COG3654 124 EHDSYIL 130 (132)
T ss_pred Hhhhhhc
Confidence 5554443
No 228
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=22.01 E-value=3.1e+02 Score=19.76 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCC-----CchhHHHHHHHHHHHcCCCHHHHHHHHH
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAG-----ISRSATIVIAYIMKHMGLDLAQAHDLVK 117 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G-----~~RS~~~~~aylm~~~~~~~~~a~~~vr 117 (146)
...-..-+....+.|.++.+-...+ .+......+..++...|+++++|++.+-
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T 279 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAAT 279 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHT
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHH
Confidence 3445566777888888999988776 4455555666677778999999987653
No 229
>KOG1838|consensus
Probab=21.90 E-value=63 Score=26.58 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=39.4
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhHCCCC
Q psy1565 68 CFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCI 123 (146)
Q Consensus 68 ~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~aylm~~~~~~~~~a~~~vr~~rp~~ 123 (146)
+.-++.++.++|=++.|.=..|.+++....=...-...-.++.++++++++++|+.
T Consensus 143 Vr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a 198 (409)
T KOG1838|consen 143 VRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQA 198 (409)
T ss_pred HHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCCC
Confidence 45577788888878888878888877654322111113456889999999999986
No 230
>KOG1905|consensus
Probab=21.88 E-value=85 Score=24.89 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=27.9
Q ss_pred CccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHH
Q psy1565 60 NLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSAT 95 (146)
Q Consensus 60 ~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~ 95 (146)
+..+.+..-++-+.+++++++.++||=-+|++-++.
T Consensus 36 D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~ 71 (353)
T KOG1905|consen 36 DPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAG 71 (353)
T ss_pred CCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccC
Confidence 334456777777778888999999999999987654
No 231
>PRK05434 phosphoglyceromutase; Provisional
Probab=21.85 E-value=1.8e+02 Score=24.72 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=33.5
Q ss_pred EEEEEEe-cCCCCCCccccHHHHHHHHHHHhhCC-CcEEEEc-CCCCchhHHHHHHHHHH
Q psy1565 47 VTEGKTI-YDEPGYNLSKHFPDCFTYIDHCHNDQ-STVYVHC-NAGISRSATIVIAYIMK 103 (146)
Q Consensus 47 ~~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~~~g-~~vlVHC-~~G~~RS~~~~~aylm~ 103 (146)
..+-+.+ .|....+ ++......++.+.+.| ++|+||| ..|..-++.-+..|+-.
T Consensus 111 ~lHl~GL~SdggVHs---h~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~ 167 (507)
T PRK05434 111 ALHLMGLLSDGGVHS---HIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLEE 167 (507)
T ss_pred eEEEEEeccCCCccc---HHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHHH
Confidence 3444554 4554444 3445555666666677 5999999 56888776666666544
No 232
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=21.65 E-value=76 Score=21.45 Aligned_cols=29 Identities=7% Similarity=0.166 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHh-hCCCcEEEEcCCCCchh
Q psy1565 65 FPDCFTYIDHCH-NDQSTVYVHCNAGISRS 93 (146)
Q Consensus 65 ~~~~~~~i~~~~-~~g~~vlVHC~~G~~RS 93 (146)
+..+.+.+.... -..++++|||+.-.+-.
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHH
Confidence 555555555441 12478999998766533
No 233
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=21.52 E-value=1.7e+02 Score=21.21 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhCCCcEEEEcCC
Q psy1565 67 DCFTYIDHCHNDQSTVYVHCNA 88 (146)
Q Consensus 67 ~~~~~i~~~~~~g~~vlVHC~~ 88 (146)
.+..+++.+.+.|.+|.+||..
T Consensus 109 ~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 109 VFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred HHHHHHHHHHHhCCCeEEEecC
Confidence 3444466666778999999975
No 234
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=21.46 E-value=1.7e+02 Score=22.85 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCc----hhHHHHHHHHHHHcCCC-HHHHHHHHHhHCCC----CCCCHHHHHHHHH
Q psy1565 65 FPDCFTYIDHCHNDQSTVYVHCNAGIS----RSATIVIAYIMKHMGLD-LAQAHDLVKKVRPC----IKPNPGFLRQLKE 135 (146)
Q Consensus 65 ~~~~~~~i~~~~~~g~~vlVHC~~G~~----RS~~~~~aylm~~~~~~-~~~a~~~vr~~rp~----~~p~~~~~~~L~~ 135 (146)
++..++.+...+..||++++|+-.+.. +.+.++..|.---..++ ..+....+.+..-. -..-+.+..-|..
T Consensus 155 ~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~ 234 (283)
T COG2230 155 YDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRL 234 (283)
T ss_pred HHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence 677888888999999999999988877 55666655533322233 34444444444321 1223345556666
Q ss_pred HHHHhcC
Q psy1565 136 WEQKHLK 142 (146)
Q Consensus 136 ~~~~l~~ 142 (146)
|...+.+
T Consensus 235 W~~~f~~ 241 (283)
T COG2230 235 WRERFEA 241 (283)
T ss_pred HHHHHHH
Confidence 6666544
No 235
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=21.13 E-value=2.4e+02 Score=22.44 Aligned_cols=32 Identities=3% Similarity=0.078 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCchhHHHHH
Q psy1565 67 DCFTYIDHCHNDQSTVYVHCNAGISRSATIVI 98 (146)
Q Consensus 67 ~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~~ 98 (146)
+..+++..+.+.++.++|....|-|.|..+.+
T Consensus 166 ~~~~~L~~~v~~~~~ili~G~tGsGKTTll~a 197 (340)
T TIGR03819 166 GVARLLRAIVAARLAFLISGGTGSGKTTLLSA 197 (340)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 56678888888889999999999999887653
No 236
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=20.80 E-value=91 Score=21.72 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=28.7
Q ss_pred CCCCCeEEEEEEecCCCCCCccccHHHHHHHHHHHhhCCCcEEEEcCCCCch
Q psy1565 41 GKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISR 92 (146)
Q Consensus 41 ~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~R 92 (146)
...-..-++..|+.-...+... ..|+++..-.|++|...|..|-+.
T Consensus 71 ~~~YD~I~lG~PvW~~~~~~pv------~tFL~~~~~~gK~v~~F~T~ggs~ 116 (156)
T PF12682_consen 71 LSDYDTIFLGTPVWWGTPPPPV------RTFLEQYDFSGKTVIPFCTSGGSG 116 (156)
T ss_dssp GGG-SEEEEEEEEETTEE-CHH------HHHHHCTTTTTSEEEEEEE-SS--
T ss_pred cccCCEEEEechHHcCCCCHHH------HHHHHhcCCCCCcEEEEEeeCCCC
Confidence 3455677888888876644433 346666656789999999877543
No 237
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=20.79 E-value=75 Score=21.80 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhHHHH
Q psy1565 80 STVYVHCNAGISRSATIV 97 (146)
Q Consensus 80 ~~vlVHC~~G~~RS~~~~ 97 (146)
.+||+=|.+..+||++-=
T Consensus 3 ~kVLFVC~gN~cRSpmAE 20 (139)
T COG0394 3 MKVLFVCTGNICRSPMAE 20 (139)
T ss_pred ceEEEEcCCCcccCHHHH
Confidence 589999999999998743
No 238
>PF12643 MazG-like: MazG-like family
Probab=20.28 E-value=2.5e+02 Score=18.07 Aligned_cols=20 Identities=20% Similarity=0.590 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHc-CCCHHHH
Q psy1565 93 SATIVIAYIMKHM-GLDLAQA 112 (146)
Q Consensus 93 S~~~~~aylm~~~-~~~~~~a 112 (146)
+.+++.+|+|... |.++.+-
T Consensus 42 Advii~~ylLa~rLGid~~~l 62 (98)
T PF12643_consen 42 ADVIIYCYLLADRLGIDFREL 62 (98)
T ss_pred HHHHHHHHHHHHHhCCCHHHH
Confidence 4677888888766 9995443
No 239
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=20.28 E-value=2.6e+02 Score=24.62 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCCchhHHHH--HHHHHHHcCCCHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIV--IAYIMKHMGLDLAQ 111 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~--~aylm~~~~~~~~~ 111 (146)
..++++|-=.+|-|.|.+++ ++||+...|.++..
T Consensus 21 ~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~ 56 (721)
T PRK11773 21 PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYS 56 (721)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhH
Confidence 45899999999999998888 78888767777654
No 240
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=20.13 E-value=4e+02 Score=21.64 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=51.3
Q ss_pred ccccHHHHHHHHHHHhhCCCcEEEEcCCCCchhHHHH--HHHHHHHcC-------CCHHHHHHHHHhHCCCCCCCHHHHH
Q psy1565 61 LSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIV--IAYIMKHMG-------LDLAQAHDLVKKVRPCIKPNPGFLR 131 (146)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~g~~vlVHC~~G~~RS~~~~--~aylm~~~~-------~~~~~a~~~vr~~rp~~~p~~~~~~ 131 (146)
+.+.+..+..|+-+..+.|..|+.. |.+|.+..+ .+-++..-| .-..+|+...++.-|...|+.....
T Consensus 103 L~~nI~~AYrFL~~~yepGD~Iy~F---GFSRGAf~aRVlagmir~vGlls~~~~~~~d~Aw~~y~~r~~~~dp~~~~~t 179 (423)
T COG3673 103 LVQNIREAYRFLIFNYEPGDEIYAF---GFSRGAFSARVLAGMIRHVGLLSRKHAARIDEAWAHYRQRLSGLDPEGQKVT 179 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEe---eccchhHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhcCCCChhhhhhh
Confidence 4456788999999999999999976 788875544 111222112 2356789999999999988865543
Q ss_pred -HHHHHHHHh
Q psy1565 132 -QLKEWEQKH 140 (146)
Q Consensus 132 -~L~~~~~~l 140 (146)
...++.+++
T Consensus 180 r~rae~f~~~ 189 (423)
T COG3673 180 RFRAEYFRNI 189 (423)
T ss_pred HhhhHHHHhh
Confidence 333444433
No 241
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=20.10 E-value=3.3e+02 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCCchhHHHHH
Q psy1565 78 DQSTVYVHCNAGISRSATIVI 98 (146)
Q Consensus 78 ~g~~vlVHC~~G~~RS~~~~~ 98 (146)
.+.+++++-..|.|.|....+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 457899999999999977653
No 242
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.01 E-value=1.4e+02 Score=21.57 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHhhCCCcEEEEcCCC
Q psy1565 64 HFPDCFTYIDHCHNDQSTVYVHCNAG 89 (146)
Q Consensus 64 ~~~~~~~~i~~~~~~g~~vlVHC~~G 89 (146)
.++++.+++-++.-..|+||||+.+-
T Consensus 23 ~iedaARlLAQA~vgeG~IYi~G~~E 48 (172)
T PF10740_consen 23 SIEDAARLLAQAIVGEGTIYIYGFGE 48 (172)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEE-GG
T ss_pred hHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 48889999999998899999998653
Done!