RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1565
(146 letters)
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 140 bits (354), Expect = 1e-43
Identities = 44/85 (51%), Positives = 58/85 (68%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
I D P ++SK+F + +ID V VHC AG+SRSAT+VIAY+MK +GL L +A
Sbjct: 55 ILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREA 114
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWE 137
++ VK RP I PN GF+RQLKE+E
Sbjct: 115 YEFVKSRRPIISPNAGFMRQLKEYE 139
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 116 bits (292), Expect = 2e-34
Identities = 42/85 (49%), Positives = 54/85 (63%)
Query: 55 DEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHD 114
D N+SK+ P+ +ID V VHC AGISRSAT++IAY+MK L L +A+
Sbjct: 47 DNHETNISKYLPEAVEFIDDAIQKGGKVLVHCQAGISRSATLIIAYLMKTRNLSLNEAYS 106
Query: 115 LVKKVRPCIKPNPGFLRQLKEWEQK 139
VK+ RP I PN GF RQL E+E+K
Sbjct: 107 FVKERRPIISPNFGFKRQLLEYERK 131
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 113 bits (284), Expect = 5e-33
Identities = 41/87 (47%), Positives = 55/87 (63%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
I D +S +FP+ +I+ + V VHC AG+SRSAT++IAY+MK + L A
Sbjct: 52 IDDNTETKISPYFPEAVEFIEDAESKGGKVLVHCQAGVSRSATLIIAYLMKTRNMSLNDA 111
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
+D VK RP I PN GFLRQL E+E+K
Sbjct: 112 YDFVKDRRPIISPNFGFLRQLIEYERK 138
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 58.6 bits (142), Expect = 2e-11
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHN---DQSTVYVHCNAGISRSATIVIAYIMKHMGLDL 109
I D +L D +D V VHC GI RS T++ AY+M + GL L
Sbjct: 80 ILDGTVPDLE----DLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSL 135
Query: 110 AQAHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDSQL 146
A VK+ R ++ L E EQ+ + +L
Sbjct: 136 ADEAIAVKRRRRPG-AVVTEIQHLFELEQELFRKKEL 171
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 40.8 bits (96), Expect = 1e-04
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 71 YIDHCHNDQSTVYVHCNAGISRSATIVIAYIM-KHMGLDLAQAHDLVKKVRPCIKPNPGF 129
+I +V VHC G RS ++ AY++ K L + + +K++R + N
Sbjct: 167 WIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNK-- 224
Query: 130 LRQLKEWEQKH 140
RQL+ E+
Sbjct: 225 -RQLRALEKML 234
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 38.3 bits (89), Expect = 4e-04
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 64 HFPDCFTYIDHCHNDQSTVYVHCNAGISRS---ATIVIAYIMKHMG-LDLAQAHDLVKKV 119
H + D + + +HC AGISRS A I + M +LA+ ++ +
Sbjct: 79 HVRAIIDFADE-WPRFAPLLIHCYAGISRSTAAALIAALALAPDMDETELAER---LRAL 134
Query: 120 RPCIKPNP 127
P PNP
Sbjct: 135 SPYATPNP 142
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 36.2 bits (84), Expect = 0.001
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 69 FTYIDHCHNDQSTVY------VHCNAGISRSATIVIAYIMKHM---GLDLAQAHDLVKKV 119
+ + + VHC+AG+ R+ T V I+ D VK++
Sbjct: 23 LELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDIFDTVKEL 82
Query: 120 R 120
R
Sbjct: 83 R 83
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 36.2 bits (84), Expect = 0.001
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 69 FTYIDHCHNDQSTVY------VHCNAGISRSATIVIAYIMKHM---GLDLAQAHDLVKKV 119
+ + + VHC+AG+ R+ T V I+ D VK++
Sbjct: 23 LELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDIFDTVKEL 82
Query: 120 R 120
R
Sbjct: 83 R 83
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 71 YIDHCHNDQST-VYVHCNAGISRSAT-IVIAYIMKHM----GLDLAQAHDLVKKVR 120
+ + + + VHC+AG+ R+ T I I +++ + +D+ + +VK++R
Sbjct: 185 AVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFE---IVKELR 237
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 74 HCHNDQSTVYVHCNAGISRSAT-IVIAYIMKHM----GLDLAQAHDLVKKVR 120
+ VHC+AG+ R+ T I I +++ + +D+ Q +VK++R
Sbjct: 163 QADPRSGPIVVHCSAGVGRTGTFIAIDILLQQLEAEGEVDVFQ---IVKELR 211
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 35.6 bits (83), Expect = 0.004
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 74 HCHNDQSTVYVHCNAGISRSATIVIAYIMKHM 105
+ VHC+AG+ R+ T + I+
Sbjct: 161 QQQPGSGPIVVHCSAGVGRTGTFIAIDILLQR 192
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 31.0 bits (70), Expect = 0.16
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 69 FTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLD 108
++ + VHC+AG+ R+ T + I+ M D
Sbjct: 208 IHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPND 247
>gnl|CDD|183177 PRK11524, PRK11524, putative methyltransferase; Provisional.
Length = 284
Score = 27.8 bits (62), Expect = 1.9
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 16/48 (33%)
Query: 53 IYDEPGYNLSKHFPD-------------CFTYIDHCH---NDQSTVYV 84
I+ +P YN+ K+F + +ID CH Q T+Y+
Sbjct: 31 IFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78
>gnl|CDD|236230 PRK08304, PRK08304, stage V sporulation protein AD; Validated.
Length = 337
Score = 27.1 bits (61), Expect = 3.5
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 50 GKTIYD----EPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISR---SATIVIAYIM 102
G+ I E GY++ ++ DC I + Q AG S SA + Y++
Sbjct: 240 GREILKELLKEEGYDIGDNYNDCGLMI-YDSEQQDV-----FAGGSGCACSAVVTYGYLL 293
Query: 103 KHM 105
K +
Sbjct: 294 KEL 296
>gnl|CDD|235648 PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.
Length = 455
Score = 27.1 bits (61), Expect = 4.0
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 101 IMKHMGL---DLAQAHDLVKKVRPCIKPNPG 128
+ K +G+ DL +A DL++ + P PG
Sbjct: 214 LAKKLGVKEEDLQEALDLIRS----LDPKPG 240
>gnl|CDD|219413 pfam07451, SpoVAD, Stage V sporulation protein AD (SpoVAD). This
family contains the bacterial stage V sporulation
protein AD (SpoVAD), which is approximately 340 residues
long. This is one of six proteins encoded by the spoVA
operon, which is transcribed exclusively in the
forespore at about the time of dipicolinic acid (DPA)
synthesis in the mother cell. The functions of the
proteins encoded by the spoVA operon are unknown, but it
has been suggested they are involved in DPA transport
during sporulation.
Length = 329
Score = 26.7 bits (60), Expect = 5.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 50 GKTIYD----EPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNA-GISRSATIVIAYIMKH 104
G+ I + E GY++S+++ DC I D VH G SA ++ Y++K
Sbjct: 235 GREIAEDLLKEKGYDISENYQDCGLLI----YDNEKQDVHAGGSGCGCSAVVLYGYLLKK 290
Query: 105 M 105
M
Sbjct: 291 M 291
>gnl|CDD|107203 cd01560, Thr-synth_2, Threonine synthase catalyzes the final step
of threonine biosynthesis. The conversion of
O-phosphohomoserine into threonine and inorganic
phosphate is pyridoxal 5'-phosphate dependent. The
Thr-synth_1 CD includes members from higher plants,
cyanobacteria, archaebacteria and eubacterial groups.
This CD, Thr-synth_2, includes enzymes from fungi and
eubacterial groups, as well as, metazoan threonine
synthase-like proteins.
Length = 460
Score = 26.8 bits (60), Expect = 5.3
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 12/60 (20%)
Query: 25 RSDRVTEGETKEGVTEGKTKEGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYV 84
S V++ ET E + + +Y+E GY + H + T V
Sbjct: 361 SSGSVSDEETLETI------------REVYEETGYLIDPHTAVGVRAAERVRKSPGTPGV 408
>gnl|CDD|226718 COG4268, McrC, McrBC 5-methylcytosine restriction system component
[Defense mechanisms].
Length = 439
Score = 26.7 bits (59), Expect = 5.6
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQKHLKD 143
KKV K N L L E + LKD
Sbjct: 14 IIKEKKVEGYWKENNPLLPALLESLNQDLKD 44
>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 150
Score = 25.8 bits (57), Expect = 7.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 82 VYVHCNAGISRSATIVIAYIMKHMGLDLA 110
V +HCN G R+ +VI + K LA
Sbjct: 94 VLIHCNRGKHRTG-LVIGCLRKLQKWSLA 121
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1.
The three non-SMC (structural maintenance of
chromosomes) subunits of the mitotic condensation
complex are Cnd1-3. The whole complex is essential for
viability and the condensing of chromosomes in mitosis.
Length = 171
Score = 25.6 bits (57), Expect = 9.5
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 60 NLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKV 119
+ FP+ + ++ C H + I ++++ + D Q LV+K+
Sbjct: 97 LIYNLFPEIISVLNSC-------TEHGQVSEEKRKKI-YKFLLEFITKD-KQKESLVEKL 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.428
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,341,569
Number of extensions: 624787
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 25
Length of query: 146
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 58
Effective length of database: 7,034,450
Effective search space: 407998100
Effective search space used: 407998100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)