RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1565
(146 letters)
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 151 bits (385), Expect = 2e-48
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
I D P N+ +FP+CF +I+ V VH NAG+SR+A IVI ++M A
Sbjct: 55 ILDLPETNILSYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSA 114
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
LVK RP I PN GF+ QL+ +++
Sbjct: 115 FSLVKNARPSICPNSGFMEQLRTYQEG 141
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Length = 155
Score = 151 bits (384), Expect = 3e-48
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
I D NLS+ FP+ +ID + V VH AG+SRS T+ +AY+M+ + L L A
Sbjct: 59 ISDHWSQNLSRFFPEAIEFIDEALSQNCGVLVHSLAGVSRSVTVTVAYLMQKLHLSLNDA 118
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDSQ 145
+DLVK+ + I PN F+ QL ++E+ L++
Sbjct: 119 YDLVKRKKSNISPNFNFMGQLLDFERS-LREGH 150
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 151 bits (383), Expect = 3e-48
Identities = 36/87 (41%), Positives = 52/87 (59%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
+YDE +L ++ D + +I S VH G+SRSA+ VIAY MK G +L +A
Sbjct: 55 VYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRA 114
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
+D VK+ R KPNP F+RQL+E++
Sbjct: 115 YDYVKERRTVTKPNPSFMRQLEEYQGI 141
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 151 bits (383), Expect = 6e-48
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
++D+P +L H ++ D + V+C G SRSA + AY+M+H G L +A
Sbjct: 63 VFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRA 122
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
+VK RP +PN GF QL+++EQ
Sbjct: 123 FQMVKSARPVAEPNLGFWAQLQKYEQT 149
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 150 bits (380), Expect = 1e-47
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
+ D ++S F + YID + + V VH AGISRSATI +AY+M + L +A
Sbjct: 55 VEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEA 114
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
+ VK+ R I PN F+ QL ++E +
Sbjct: 115 FEFVKQRRSIISPNFSFMGQLLQFESQ 141
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 149 bits (379), Expect = 2e-47
Identities = 40/89 (44%), Positives = 51/89 (57%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
I D P N+ + FP +ID V VH NAGISRSA VIAYIM+ G+ A
Sbjct: 64 IADNPVENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISRSAAFVIAYIMETFGMKYRDA 123
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQKHL 141
V++ R CI PN GF+ QL+E+E +L
Sbjct: 124 FAYVQERRFCINPNAGFVHQLQEYEAIYL 152
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 149 bits (379), Expect = 2e-47
Identities = 37/87 (42%), Positives = 52/87 (59%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
D NL ++F + F +I+ H + +HC AG+SRSATIVIAY+MKH + + A
Sbjct: 57 ATDSNKQNLRQYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDA 116
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
+ VK RP I PN F+ QL E+E+
Sbjct: 117 YKFVKGKRPIISPNLNFMGQLLEFEED 143
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 150 bits (380), Expect = 2e-47
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
I E G+ L P+ +I + V + G++++ IVIA++M + L A
Sbjct: 61 IVSEEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINA 120
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
+ V+ + P I GF+ QLK +E+K
Sbjct: 121 FNKVQGLYPLIDIESGFILQLKLFEKK 147
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 151 bits (382), Expect = 3e-47
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
+ D ++S HF + +ID V VH AGISRS TI +AY+MK L +A
Sbjct: 57 VEDSHTADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEA 116
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
D +K+ R + PN GF+ QL ++E +
Sbjct: 117 FDYIKQRRSMVSPNFGFMGQLLQYESE 143
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 150 bits (380), Expect = 3e-47
Identities = 32/87 (36%), Positives = 44/87 (50%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
+ D P L F +I Q +HC AG+SRSA + +AY+MK+ + L A
Sbjct: 71 VADSPNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDA 130
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
H K RP I+PN GF QL +E +
Sbjct: 131 HTWTKSCRPIIRPNSGFWEQLIHYEFQ 157
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 149 bits (378), Expect = 5e-47
Identities = 37/87 (42%), Positives = 52/87 (59%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
D NL ++F + F +I+ H + +HC AG+SRSATIVIAY+MKH + + A
Sbjct: 61 ATDSNKQNLRQYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDA 120
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
+ VK RP I PN F+ QL E+E+
Sbjct: 121 YKFVKGKRPIISPNLNFMGQLLEFEED 147
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 149 bits (378), Expect = 6e-47
Identities = 34/87 (39%), Positives = 49/87 (56%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
+ D P + +F I VHC AG+SRSAT+ IAY+MK + L +A
Sbjct: 77 LADMPHAPIGLYFDTVADKIHSVSRKHGATLVHCAAGVSRSATLCIAYLMKFHNVCLLEA 136
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
++ VK RP I+PN GF RQL ++E++
Sbjct: 137 YNWVKARRPVIRPNVGFWRQLIDYERQ 163
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 148 bits (376), Expect = 7e-47
Identities = 36/93 (38%), Positives = 49/93 (52%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
D P NL++HF + +I C + VHC AG+SRS T+VIAYIM A
Sbjct: 57 AADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDA 116
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDSQ 145
V+ R C PN GF RQL+E+E+ + +
Sbjct: 117 LHTVRAGRSCANPNVGFQRQLQEFEKHEVHQYR 149
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 147 bits (373), Expect = 2e-46
Identities = 35/87 (40%), Positives = 46/87 (52%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
+ D P + KHF +C +I C + VH AGISRS TIV AY+M GL
Sbjct: 58 VADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDV 117
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQK 139
+ +K RP PNPGF +QL+E+
Sbjct: 118 LEAIKATRPIANPNPGFRQQLEEFGWA 144
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 141 bits (358), Expect = 5e-44
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 51 KTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLA 110
E ++ P + I + + +H G+SRSAT++IAYIMK+ L L
Sbjct: 89 HHYRWEHDSQIALDLPSLTSIIHAATTKREKILIHAQCGLSRSATLIIAYIMKYHNLSLR 148
Query: 111 QAHDLVKKVRPCIKPNPGFLRQLKEWEQK 139
++DL+K I P+ G + QL EWE
Sbjct: 149 HSYDLLKSRADKINPSIGLIFQLMEWEVA 177
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 140 bits (354), Expect = 3e-43
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQ- 111
+ D+ ++SK+F D ++ C V VHC AG++RS +++AY+M L
Sbjct: 99 LVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHCAAGVNRSGAMILAYLMSKNKESLPML 158
Query: 112 ----AHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDS 144
+ ++ +R NP F RQ+ E S
Sbjct: 159 YFLYVYHSMRDLRGAFVENPSFKRQIIEKYVIDKNGS 195
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 138 bits (350), Expect = 4e-43
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHC-HNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQ 111
+D P +++S HF +I + VHC G+SRSAT+V+AY+M + L L +
Sbjct: 58 AHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVE 117
Query: 112 AHDLVKKVRPCIKPNPGFLRQLKEWEQK 139
A VK R I PN GFLRQL +++
Sbjct: 118 AIKKVKDHRGII-PNRGFLRQLLALDRR 144
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 140 bits (355), Expect = 5e-43
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCH-NDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQ 111
D P ++LS F +ID +D S + VHC G SRSAT+V+AY+M H + L
Sbjct: 112 ADDLPTFDLSVFFYPAAAFIDRALSDDHSKILVHCVMGRSRSATLVLAYLMIHKDMTLVD 171
Query: 112 AHDLVKKVRPCIKPNPGFLRQLKEWEQK 139
A V K R C+ PN GFL+QL+E +++
Sbjct: 172 AIQQVAKNR-CVLPNRGFLKQLRELDKQ 198
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 138 bits (349), Expect = 6e-43
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQA 112
D G + + VYVHC AG SRSAT+V AY+++ +A
Sbjct: 63 TVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEA 122
Query: 113 HDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDSQ 145
+ + K+R I P L LKE+ ++ +
Sbjct: 123 IEAIAKIRSHISIRPSQLEVLKEFHKEITARAA 155
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 139 bits (353), Expect = 7e-43
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHC-HNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQ 111
D P ++LS +F YI Q V VHC G+SRSAT+V+A++M + + L +
Sbjct: 104 ADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTLVE 163
Query: 112 AHDLVKKVRPCIKPNPGFLRQLKEWEQKHLKDSQ 145
A V+ R I PN GFLRQL+ + + +++
Sbjct: 164 AIQTVQAHRN-ICPNSGFLRQLQVLDNRLGRETG 196
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 138 bits (351), Expect = 8e-43
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQ-STVYVHCNAGISRSATIVIAYIMKHMGLDLAQ 111
D +NLS +F +ID + V VHC G SRS T+VIAY+M +D+
Sbjct: 88 ANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKS 147
Query: 112 AHDLVKKVRPCIKPNPGFLRQLKEWEQK 139
A +V++ R I PN GFL QL + +
Sbjct: 148 ALSIVRQNRE-IGPNDGFLAQLCQLNDR 174
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 135 bits (342), Expect = 1e-41
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQ- 111
+ D+ ++SK+F D ++ C V VH AG++RS +++AY+M L
Sbjct: 82 LVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHSAAGVNRSGAMILAYLMSKNKESLPML 141
Query: 112 ----AHDLVKKVRPCIKPNPGFLRQLKEWE 137
+ ++ +R NP F RQ+ E
Sbjct: 142 YFLYVYHSMRDLRGAFVENPSFKRQIIEKY 171
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 82.9 bits (204), Expect = 4e-20
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 53 IYDEPGYNLSKHFPDCFTYIDHCHNDQ-STVYVHCNAGISRSATIVIAYIMKHMGLDLAQ 111
I D ++L P + YVH AG+ R+ + + Y+ G L +
Sbjct: 79 IRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVALTYMFWVQGYKLME 138
Query: 112 AHDLVKKVRPCIKPNPGFLRQ 132
AH L+ R C
Sbjct: 139 AHKLLMSKRSCFPKLDAIRNA 159
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 79.4 bits (196), Expect = 6e-20
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 72 IDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLR 131
+D + V VHC G R+ T++ Y++K GL A ++++RP +
Sbjct: 82 VDEANARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEK 141
Query: 132 QLKEWEQKH 140
+ ++ Q+
Sbjct: 142 AVFQFYQRT 150
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 67.4 bits (164), Expect = 3e-14
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 64 HFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRP-- 121
++D C N + + VH AG+ R+ T++ YIMKH + A+ V+ RP
Sbjct: 254 TDAIVKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGS 313
Query: 122 CIKPNPGFL--RQLKEWEQKH 140
I P FL +Q W +
Sbjct: 314 VIGPQQQFLVMKQTNLWLEGD 334
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 63.3 bits (154), Expect = 1e-13
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 66 PDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKP 125
T + +++ VHC GI R+ TI+ +Y++ GL++ A D V+ VRP
Sbjct: 76 SQFLTIMKWLLSEKEGNLVHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAVQ 135
Query: 126 NPG---FLRQLKEWEQKHLKD 143
FL +++ + LK+
Sbjct: 136 TYEQEMFLLRVEGMRKSWLKN 156
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 57.8 bits (139), Expect = 3e-11
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 57 PGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLV 116
P ++ F + N + VHC G +R+ ++ A++++ M + A
Sbjct: 120 PTTENTETFIRLCERF-NERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATF 178
Query: 117 KKVRPCIKPNPGFLRQLKE 135
+ RP +L++L
Sbjct: 179 AQARPPGIYKGDYLKELFR 197
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 53.0 bits (127), Expect = 9e-10
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 76 HNDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQL 133
V VHC GI+R+ +V Y+M +G+ +A D +K R +++ L
Sbjct: 110 KCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKARGHKIERQNYVQDL 167
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 49.2 bits (117), Expect = 3e-08
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 81 TVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRP 121
T+ VHC AG+ R+ +V ++++ + A L+++ R
Sbjct: 111 TIGVHCVAGLGRAPILVALALVEYGNVSALDAIALIREKRK 151
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 47.8 bits (113), Expect = 1e-07
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 58 GYNLSKHFPDCFTYIDHCH---NDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHD 114
G S D + + + VHC AG+ R+ +V +++ G+ A
Sbjct: 93 GAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEG-GMKYEDAVQ 151
Query: 115 LVKKVRPC--IKPNPGFLRQLKEWEQKHLKDSQ 145
+++ R +L + + + KDS
Sbjct: 152 FIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSN 184
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 47.4 bits (112), Expect = 2e-07
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 72 IDHCHNDQSTVYVHCNAGISRSATIVIAYIMK-HMGLDLAQAHDLVKKVR-PCIKPNPGF 129
+ C + +H G+ RS + ++ + QA D ++ +R
Sbjct: 126 LTTCLKNYRKTLIHSYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQ 185
Query: 130 LRQLKEWEQK 139
L E+ K
Sbjct: 186 YNYLHEFRDK 195
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 45.8 bits (108), Expect = 4e-07
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 62 SKHFPDCFTYIDHCH---NDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKK 118
S D + + + VHC AG+ R+ +V +++ G+ A +++
Sbjct: 76 SNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEG-GMKYEDAVQFIRQ 134
Query: 119 VRPCIKPNPGFLRQLKEWEQK 139
R N L L+++ K
Sbjct: 135 KRRGA-FNSKQLLYLEKYRPK 154
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 40.3 bits (93), Expect = 7e-05
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 55 DEPGYNLSKHFPDCFTYIDHCHND-QSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQAH 113
+L F C + + ++ VHC G + S+ +V A +
Sbjct: 90 IRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPA 149
Query: 114 -DLVKKVRPCIKPNPGFLRQLKEWEQ 138
L+ RP I +P R L
Sbjct: 150 VRLLYAKRPGIGLSPSHRRYLGYMCD 175
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 38.5 bits (88), Expect = 3e-04
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLAQ-AHDLVKKVRPCIKPNPGFLRQLKE 135
+ + +H G R+ T+V +++++ D A+ A + R + F + ++
Sbjct: 117 DPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVF-QGVET 175
Query: 136 WEQKH 140
Q
Sbjct: 176 ASQIR 180
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 35.5 bits (81), Expect = 0.004
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 82 VYVHCNAGISRSAT-IVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKH 140
++ HC AG R+ + + +MK+ + L + + +W+ +
Sbjct: 533 LHFHCQAGAGRTTAYMAMYDMMKNPDVSLGDILSRQYLLGGNYVAYEIAKPKPDQWKADY 592
Query: 141 LKD 143
Sbjct: 593 YHQ 595
Score = 29.0 bits (64), Expect = 0.61
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 82 VYVHCNAGISRSATIVIAYIMKH 104
++ HC AG+ R+ ++ + +
Sbjct: 235 LHYHCYAGMGRTTIFMVMHDILK 257
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 34.9 bits (79), Expect = 0.006
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 77 NDQSTVYVHCNAGISRSATIVIAYIMKHMGLDLA-QAHDLVKKVRPCIKP 125
+D +HC AG R+ ++ AY++ A +A D +VR K
Sbjct: 109 DDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKK 158
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 34.3 bits (79), Expect = 0.008
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 63 KHFPDCFTYIDHCHNDQSTVYVHCNAGISRSAT-IVIAYIMKHMG----LDLAQAHDLVK 117
+ P + + H+ + + +HC G ++ + +++ +D+ Q VK
Sbjct: 523 QKLPQKNSSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNLLESAETEEVVDIFQV---VK 579
Query: 118 KVR 120
+R
Sbjct: 580 ALR 582
Score = 31.3 bits (71), Expect = 0.091
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VH +AG+ R+ T I I +++ +
Sbjct: 228 VHSSAGVGRTGTYIGIDAMLEGL 250
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 33.5 bits (77), Expect = 0.017
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHMG----LDLAQAHDLVKKVR 120
VH G + + + + + +D+ Q K +
Sbjct: 524 VHDEYGAVSAGMLCALTTLSQQLENENAVDVFQV---AKMIN 562
Score = 31.2 bits (71), Expect = 0.093
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG+ R+ T IVI +++ +
Sbjct: 233 VHCSAGVGRTGTYIVIDSMLQQI 255
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 33.1 bits (76), Expect = 0.022
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHMG----LDLAQAHDLVKKVR 120
VHC+AG+ R+ I ++ +++ M +D+ Q VK +R
Sbjct: 505 VHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQT---VKTLR 543
Score = 31.2 bits (71), Expect = 0.094
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG+ R+ IVI +++ M
Sbjct: 214 VHCSAGVGRTGCFIVIDAMLERM 236
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 33.1 bits (76), Expect = 0.024
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 74 HCHNDQSTVYVHCNAGISRSAT-IVIAYIMKHMG----LDLAQAHDLVKKVR 120
+ VHC+AG R+ T I ++ I++ + LD+ QA VK +R
Sbjct: 513 QQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQA---VKSLR 561
Score = 31.2 bits (71), Expect = 0.095
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG+ R+ T IVI +M M
Sbjct: 228 VHCSAGVGRTGTFIVIDAMMAMM 250
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 32.6 bits (74), Expect = 0.035
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 84 VHCNAGISRSATIVIAYIMKHMG-LDLAQAHDLVKKVR 120
+HC G+ R+ T+ A ++K +L + R
Sbjct: 319 IHCLGGVGRTGTMAAALVLKDNPHSNLE---QVRADFR 353
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 32.4 bits (73), Expect = 0.041
Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 82 VYVHCNAGISRSATIVIAY-IMKHMGLDLAQAHDLVKKVRPC-IKPNPGFLRQLKEWEQK 139
++ H AG+ R+ ++ ++K+ + L ++ P + W+ K
Sbjct: 216 LHFHSEAGVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTK 275
Query: 140 HLKD 143
+ ++
Sbjct: 276 YYRE 279
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.048
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 18/42 (42%)
Query: 105 MGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQ--KHLKDS 144
MG+DL + + V W + H KD+
Sbjct: 1631 MGMDLYKTSKAAQDV----------------WNRADNHFKDT 1656
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 31.4 bits (72), Expect = 0.064
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 71 YIDHCHNDQSTVYVHCNAGISRSAT-IVIAYIMKHM 105
Y+ D V VHC+AGI R+ + + M
Sbjct: 201 YVRSLRVDSEPVLVHCSAGIGRTGVLVTMETAMCLT 236
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 31.4 bits (72), Expect = 0.067
Identities = 7/23 (30%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG R+ T ++ +++ +
Sbjct: 181 VHCSAGAGRTGTFCALSTVLERV 203
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 31.2 bits (70), Expect = 0.072
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 82 VYVHCNAGISRSATIVIAYIMKHMGLDLAQAHD 114
V +HC G R+ ++ + K L D
Sbjct: 95 VLIHCKRGKHRTGC-LVGCLRKLQKWCLTSIFD 126
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 31.7 bits (72), Expect = 0.074
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AGI R+ T IVI ++ +
Sbjct: 457 VHCSAGIGRTGTFIVIDILIDII 479
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 31.1 bits (71), Expect = 0.088
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+ G R+ T I+I ++ M
Sbjct: 229 VHCSDGAGRTGTYILIDMVLNRM 251
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 31.1 bits (71), Expect = 0.089
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
+HC+AGI RS T ++ + M
Sbjct: 214 IHCSAGIGRSGTFSLVDTCLVLM 236
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 31.0 bits (71), Expect = 0.090
Identities = 8/23 (34%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
+HC+AG+ R+ T I + +++H+
Sbjct: 221 IHCSAGVGRTGTFIALDRLLQHI 243
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 31.1 bits (71), Expect = 0.091
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG R+ + Y+ + +
Sbjct: 231 VHCSAGCGRTGVLCTVDYVRQLL 253
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 31.1 bits (71), Expect = 0.093
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
+HC+AG R+ I Y +
Sbjct: 225 IHCSAGCGRTGVICAIDYTWMLL 247
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 31.1 bits (71), Expect = 0.10
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG+ R+ T +VI ++ M
Sbjct: 230 VHCSAGVGRTGTFVVIDAMLDMM 252
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 31.1 bits (71), Expect = 0.11
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AGI R+ I + M +
Sbjct: 242 VHCSAGIGRTGVLITMETAMCLI 264
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 30.7 bits (70), Expect = 0.11
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VH +AGI R+ T IVI +M+++
Sbjct: 209 VHSSAGIGRTGTIIVIDMLMENI 231
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 30.7 bits (70), Expect = 0.12
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG+ R+ T IVI +++ +
Sbjct: 251 VHCSAGVGRTGTYIVIDSMLQQI 273
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 30.7 bits (70), Expect = 0.12
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AGI R+ I + + +
Sbjct: 227 VHCSAGIGRTGCFIATSIGCQQL 249
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 30.8 bits (70), Expect = 0.12
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AGI R+ T IVI ++ +
Sbjct: 244 VHCSAGIGRTGTFIVIDILIDII 266
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 31.0 bits (70), Expect = 0.13
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AGI R+ T IVI +M+++
Sbjct: 451 VHCSAGIGRTGTIIVIDMLMENI 473
Score = 26.0 bits (57), Expect = 6.6
Identities = 6/67 (8%), Positives = 15/67 (22%), Gaps = 5/67 (7%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM----GLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQ 138
V C G + + + +A +R ++
Sbjct: 169 VMCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVNAADIENRVL 228
Query: 139 KHLKDSQ 145
+ K +
Sbjct: 229 ELNKKQE 235
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 31.1 bits (70), Expect = 0.13
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VH +AGI R+ T IVI +M+++
Sbjct: 451 VHSSAGIGRTGTIIVIDMLMENI 473
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 30.8 bits (70), Expect = 0.14
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AGI R+ I + +
Sbjct: 238 VHCSAGIGRTGCFIATRIGCQQL 260
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 30.7 bits (70), Expect = 0.14
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
HC+AGI RS T I I ++ +
Sbjct: 244 THCSAGIGRSGTLICIDVVLGLI 266
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 30.8 bits (70), Expect = 0.14
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 71 YIDHCHNDQSTVYVHCNAGISRSAT-IVIAYIMKHM 105
+ + VH +AGI R+ I + + +
Sbjct: 223 AAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQL 258
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 30.8 bits (70), Expect = 0.14
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG+ R+ T I I ++ +
Sbjct: 242 VHCSAGVGRTGTFIAIDRLIYQI 264
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 30.6 bits (70), Expect = 0.15
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG R+ I I ++
Sbjct: 217 VHCSAGAGRTGCFIAIDTMLDMA 239
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 30.3 bits (69), Expect = 0.20
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG+ R+ I+ ++ +
Sbjct: 257 VHCSAGVGRTGVLILSELMIYCL 279
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 30.0 bits (68), Expect = 0.21
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AGI R+ T I + H+
Sbjct: 227 VHCSAGIGRTGTLIGAYAALLHI 249
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 29.9 bits (68), Expect = 0.21
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AGI R+ T + + +
Sbjct: 238 VHCSAGIGRTGTFCSLDICLAQL 260
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 29.9 bits (68), Expect = 0.23
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG+ RS T I + I++ +
Sbjct: 240 VHCSAGVGRSGTFITLDRILQQI 262
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 29.9 bits (68), Expect = 0.25
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AG+ R+ T I + I++ +
Sbjct: 223 VHCSAGVGRTGTFIALDRILQQL 245
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 29.2 bits (66), Expect = 0.49
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 84 VHCNAGISRSAT-IVIAYIMKHM 105
VHC+AGI RS T + + M
Sbjct: 219 VHCSAGIGRSGTFCLADTCLLLM 241
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 28.0 bits (62), Expect = 0.82
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 82 VYVHCNAGISRSATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLRQLKEWEQKH 140
V VHC A R++ Y +K G + A + + P + L
Sbjct: 100 VLVHCLANY-RASAFAYLYQLKQ-GQNPNMA-QTMTPWNDELAIYPK-WQALLTEVSAK 154
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta
sheet, four helix bundle, transferase; HET: YCM; 1.74A
{Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Length = 349
Score = 28.3 bits (62), Expect = 0.97
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 105 MGLDLAQAHDLVKKVRPCIKPNPGFLRQLKE 135
M L A DL K + + PN F Q+KE
Sbjct: 1 MELRHTPARDLDKFIEDHLLPNTXFRTQVKE 31
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
c.94.1.1 PDB: 1poy_1*
Length = 325
Score = 27.2 bits (61), Expect = 2.1
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 93 SATIVIAYIMKHMGLD--------LAQAHDLVKKVRPCIK 124
A V ++ +G + A++ +KK+ P +
Sbjct: 145 DAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVA 184
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 27.0 bits (60), Expect = 2.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 84 VHCNAGISRSATIVIAYIM 102
+H AG+ R+A ++ A M
Sbjct: 239 IHSRAGVGRTAQLIGAMCM 257
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 26.4 bits (59), Expect = 4.6
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 122 CIKPNPGFLRQLKEWEQKH 140
C+ FL L+ +
Sbjct: 248 CVPAERAFLDLLRAEASRC 266
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase,
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus}
Length = 94
Score = 25.2 bits (56), Expect = 4.7
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 78 DQSTVYVHCNAGISRSATIVIAYIMKHMGLD 108
+ + + C G+ S V A ++ G +
Sbjct: 52 PRRPLLLVCEKGL-LSQ--VAALYLEAEGYE 79
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 25.9 bits (58), Expect = 5.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 122 CIKPNPGFLRQLKEWEQKH 140
+ P PGFL L+E +++
Sbjct: 215 VVPPQPGFLEGLREVTEQN 233
>1b35_B CRPV, protein (cricket paralysis virus, VP2); insect picorna-like
virus, icosahedral virus; 2.40A {Cricket paralysis
virus} SCOP: b.121.4.1
Length = 255
Score = 25.8 bits (56), Expect = 5.4
Identities = 4/52 (7%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 65 FPDCFTYIDHCHNDQSTVYVH--CNAGISRSATIVIAYIMKHMGLDLAQAHD 114
+ + + + + + I Y+ H+ +L
Sbjct: 137 YMPNRVTLINETLQGRSGCPRTDLELSVGTEVEMRIPYVSPHLYYNLITGQG 188
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 25.9 bits (58), Expect = 5.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 122 CIKPNPGFLRQLKEWEQKH 140
I P+ GFL L+E +H
Sbjct: 214 FIVPDAGFLEGLREITLEH 232
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 26.0 bits (58), Expect = 5.7
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 122 CIKPNPGFLRQLKEWEQKH 140
+ FLR+ E +++
Sbjct: 216 VTPVSDSFLREGAELARQY 234
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 25.9 bits (58), Expect = 6.1
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 122 CIKPNPGFLRQLKEWEQKH 140
I P FL L+ ++
Sbjct: 218 VIPPRREFLAALQRLSRES 236
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 25.9 bits (58), Expect = 6.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 122 CIKPNPGFLRQLKEWEQKH 140
++P PGFL ++ E +
Sbjct: 217 IVEPKPGFLEKVNELVHEA 235
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich,
structural genomics; 2.00A {Staphylococcus aureus subsp}
PDB: 3iwh_A 3mzz_A
Length = 103
Score = 24.9 bits (55), Expect = 6.4
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 81 TVYVHCNAGISRSATIVIAYIMKHMGLD 108
Y+ C G+ RSA + ++ G+D
Sbjct: 58 IYYIVCAGGV-RSA--KVVEYLEANGID 82
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 25.7 bits (57), Expect = 6.4
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 88 AGISRSATIVIAYIMKHMGLDLAQAHDLV 116
+S + +M+ +G H L
Sbjct: 88 VILSDTFYEFSQPLMRQLGFPTLLCHKLE 116
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 25.9 bits (58), Expect = 6.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 122 CIKPNPGFLRQLKEWEQKH 140
CI P P FL L+ +
Sbjct: 215 CIPPLPEFLPGLRALCDEF 233
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour
suppressor, DNA damage, DNA recombination, DNA repair,
hydrolase, magnesium; NMR {Mus musculus}
Length = 87
Score = 24.9 bits (54), Expect = 6.6
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 117 KKVRPCIK-PNPGFLRQLKEW 136
VRP PNP F+R L EW
Sbjct: 5 ASVRPLPVCPNPLFVRWLTEW 25
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 25.5 bits (57), Expect = 7.8
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 122 CIKPNPGFLRQLKE 135
+ P FL+ L E
Sbjct: 214 VLVPTEDFLKALHE 227
>2jbh_A Phosphoribosyltransferase domain-containing prote;
glycosyltransferase, purine salvage; HET: 5GP; 1.7A
{Homo sapiens}
Length = 225
Score = 25.6 bits (56), Expect = 7.8
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 55 DEPGYNLSKHFPDCFTYIDHCHNDQSTVYV 84
D PGY+L + FTY H + D V +
Sbjct: 20 DWPGYDL-----NLFTYPQHYYGDLEYVLI 44
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 25.2 bits (56), Expect = 8.5
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 55 DEPGYNLSKHFPDCFTYIDHCHNDQSTVYV 84
DEPGY+L D F +H D V++
Sbjct: 12 DEPGYDL-----DLFCIPNHYAEDLERVFI 36
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor,
immunoglobulin domain, ZONA pellucida, TG ligand
CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus
norvegicus}
Length = 176
Score = 25.2 bits (54), Expect = 8.6
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 69 FTYIDHCHNDQSTVYVHCNAGI 90
F+++ + S +++HC +
Sbjct: 102 FSFLFKSVFNTSLLFLHCELTL 123
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 25.4 bits (56), Expect = 9.0
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 56 EPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNA-GISRSATIVIAYIMKHM 105
E G N+ DC I DQ V G + SA + A+I K +
Sbjct: 249 EEGINVGTKHNDCGLMI--YTPDQQ---VFAGGSGCACSAVVTFAHIFKEI 294
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 25.3 bits (56), Expect = 9.2
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 94 ATIVIAYIMKHMGLDLAQAHDLVKKVRPCIKPNPGFLR 131
AT+V+ ++KH + ++L K +KP ++
Sbjct: 410 ATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVK 447
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 25.1 bits (54), Expect = 9.4
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 45 EGVTEGKTIYDEPGYNLSKHFPDCFTYIDHCHNDQSTVYVHCNAGISRSATI-----VIA 99
GV T+ D PGY + + DCF I ++Q Y+H +G++R I
Sbjct: 72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCF 131
Query: 100 YIMKHMG-----LDLAQAHDLVKKV 119
Y + G LD+A + KV
Sbjct: 132 YFISPFGHGLKPLDVAFMKAIHNKV 156
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine
binding protein (POTF); 2.20A {Escherichia coli} SCOP:
c.94.1.1
Length = 344
Score = 25.3 bits (56), Expect = 10.0
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 93 SATIVIAYIMKHMGLDL---------AQAHDLVKKVRPCIK 124
+ V A ++ ++G D A DL+ K+RP I+
Sbjct: 156 APEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIR 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.428
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,338,102
Number of extensions: 128449
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 109
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)