BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15650
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O76756|RS8_APIME 40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2
Length = 208
Score = 196 bits (499), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 104/171 (60%), Positives = 113/171 (66%), Gaps = 41/171 (23%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
TRGGNKKYRALR+D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKNAIV IDAT
Sbjct: 48 TRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDAT 107
Query: 62 PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
PFRQWYE +Y LP+GR++ KL
Sbjct: 108 PFRQWYEGHYVLPLGRKRGAKL-------------------------------------- 129
Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
TEAEE VLNKKRSKK KYK+RQ+ AKVE A+EEQF TGR+L I S
Sbjct: 130 ---TEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISS 177
>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1
Length = 208
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/171 (56%), Positives = 115/171 (67%), Gaps = 41/171 (23%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
+RGGN KYRALR+D GNFSWGSEC TRK+RIIDVVYNASNNELVRTKTLVKNAIVV+DAT
Sbjct: 48 SRGGNTKYRALRLDTGNFSWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDAT 107
Query: 62 PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
PFRQWYE++Y LP+GR+K KL
Sbjct: 108 PFRQWYESHYLLPLGRKKGAKL-------------------------------------- 129
Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
TEAE+A++NKKRS+K KKY +RQ+ +KVE A+EEQF TGR+L + S
Sbjct: 130 ---TEAEDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVAS 177
>sp|P62243|RS8_RAT 40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2
Length = 208
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
+RQWYE++YALP+GR+K KL
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
T EE +LNKKRSKK+ KKY R+K+AK+ +EEQFQ G++L I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177
>sp|P62242|RS8_MOUSE 40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2
Length = 208
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
+RQWYE++YALP+GR+K KL
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
T EE +LNKKRSKK+ KKY R+K+AK+ +EEQFQ G++L I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177
>sp|Q4R6P8|RS8_MACFA 40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3
Length = 208
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
+RQWYE++YALP+GR+K KL
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
T EE +LNKKRSKK+ KKY R+K+AK+ +EEQFQ G++L I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177
>sp|P62241|RS8_HUMAN 40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2
Length = 208
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
+RQWYE++YALP+GR+K KL
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
T EE +LNKKRSKK+ KKY R+K+AK+ +EEQFQ G++L I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177
>sp|Q5E958|RS8_BOVIN 40S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=2 SV=3
Length = 208
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
+RQWYE++YALP+GR+K KL
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
T EE +LNKKRSKK+ KKY R+K+AK+ +EEQFQ G++L I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177
>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3
Length = 208
Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 110/170 (64%), Gaps = 41/170 (24%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN I+++D+TP
Sbjct: 49 RGGNKKYRALRLDAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
FRQW+E +YALP+GR+K KL
Sbjct: 109 FRQWFEAHYALPLGRKKGAKL--------------------------------------- 129
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
T EE +LNKKRSKK KKY+ R+K AK+ +EEQFQ G++L I S
Sbjct: 130 --TPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIAS 177
>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1
SV=1
Length = 208
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 105/171 (61%), Gaps = 39/171 (22%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
TRGGN K RALR++ GNF+W SE RKTRI DVVYNASNNELVRTKTLVKN+IVVIDAT
Sbjct: 48 TRGGNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDAT 107
Query: 62 PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
PFRQWYE +Y LP+GR++ K
Sbjct: 108 PFRQWYEAHYVLPLGRKRNPK--------------------------------------- 128
Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
E E VL KKRS+KV+KKY RQK+ KVEQA+E+QF +GRIL I S
Sbjct: 129 HAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISS 179
>sp|P48156|RS8_CAEEL 40S ribosomal protein S8 OS=Caenorhabditis elegans GN=rps-8 PE=3
SV=1
Length = 208
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 105/179 (58%), Gaps = 41/179 (22%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
TRGGN+KYRALR+D GNFSW SE TRKTRI+D +YNA+NNELVRTKTLVK AI+ +DA
Sbjct: 48 TRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAA 107
Query: 62 PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
PFRQWYE +YALP+ R+K KL
Sbjct: 108 PFRQWYEAHYALPLARKKNAKL-------------------------------------- 129
Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSERTAVRQA 180
+E + A+LNKKRS +KKY RQK A V+ + EQF TGR+L I S V QA
Sbjct: 130 ---SEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQA 185
>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3
Length = 208
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 111/170 (65%), Gaps = 41/170 (24%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN ++++D+ P
Sbjct: 49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
FRQWYE++YALP+GR+K KL
Sbjct: 109 FRQWYESHYALPLGRKKGAKL--------------------------------------- 129
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
T EE +LNKKRSKKV KK+ R+K++K+ ++EQFQ G++L I S
Sbjct: 130 --TPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISS 177
>sp|P62247|RS8_DANRE 40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2
Length = 208
Score = 163 bits (412), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 110/170 (64%), Gaps = 41/170 (24%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN +V++D+TP
Sbjct: 49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
+RQWYE++YALP+GR+K KL
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
T EE +LNKKRSKKV KK+ R+K AK+ +EEQF G++L I S
Sbjct: 130 --TPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISS 177
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2
Length = 221
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 99/170 (58%), Gaps = 33/170 (19%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGN K+RALR+D GN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA P
Sbjct: 50 RGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAP 109
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
F+QWY T+Y + IGR+K TP+ +
Sbjct: 110 FKQWYLTHYGVDIGRKKK--------TPAAKKDNAE------------------------ 137
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
E E A K+S V +K + R++ ++ IEEQF +GR+L I S
Sbjct: 138 -GQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISS 186
>sp|P49199|RS8_ORYSJ 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8
PE=2 SV=2
Length = 220
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 101/170 (59%), Gaps = 34/170 (20%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGN K+RALR+D GN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA P
Sbjct: 50 RGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAP 109
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
F+QWY T+Y + IGR+K ++ D E T
Sbjct: 110 FKQWYLTHYGVDIGRKKK-APAAKKDAEGQDAEATT------------------------ 144
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
EEA K+S VV+K + RQ+ ++ IEEQF +GR+L I S
Sbjct: 145 -----EEA----KKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISS 185
>sp|Q9FIF3|RS82_ARATH 40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2
SV=1
Length = 210
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 95/170 (55%), Gaps = 45/170 (26%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGN K+RALR+D GNFSWGSE TRKTRI+DV YNASNNELVRT+TLVK+AIV +DA P
Sbjct: 50 RGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAP 109
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
F+Q Y +Y + IGR+K G+ +V T +
Sbjct: 110 FKQGYLQHYGVDIGRKKKGE-----------------------------AVTTEEV---- 136
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
K+S V +K + RQ+ ++ +EEQF +GR+L I S
Sbjct: 137 ------------KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIAS 174
>sp|P0CX40|RS8B_YEAST 40S ribosomal protein S8-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS8B PE=1 SV=1
Length = 200
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 90/171 (52%), Gaps = 47/171 (27%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
TRGGNKKYRALRI+ GNFSW SE ++KTRI VVY+ SNNELVRT TL K AIV IDAT
Sbjct: 48 TRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDAT 107
Query: 62 PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
PFRQW+E +Y +G++K
Sbjct: 108 PFRQWFEAHYGQTLGKKK------------------------------------------ 125
Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
N + EE V +SK +K+ +R AK+E ++E QF GR+ I S
Sbjct: 126 --NVKEEETVA---KSKNAERKWAARAASAKIESSVESQFSAGRLYACISS 171
>sp|P0CX39|RS8A_YEAST 40S ribosomal protein S8-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS8A PE=1 SV=1
Length = 200
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 90/171 (52%), Gaps = 47/171 (27%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
TRGGNKKYRALRI+ GNFSW SE ++KTRI VVY+ SNNELVRT TL K AIV IDAT
Sbjct: 48 TRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDAT 107
Query: 62 PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
PFRQW+E +Y +G++K
Sbjct: 108 PFRQWFEAHYGQTLGKKK------------------------------------------ 125
Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
N + EE V +SK +K+ +R AK+E ++E QF GR+ I S
Sbjct: 126 --NVKEEETVA---KSKNAERKWAARAASAKIESSVESQFSAGRLYACISS 171
>sp|O81361|RS8_PRUAR 40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1
Length = 221
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 94/170 (55%), Gaps = 35/170 (20%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGN K+RALR+D GNFSWGSE TRKTR++DVVYNASNNELVRT+TLVK+AIV +DA P
Sbjct: 50 RGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAP 109
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
F+QWY +Y + IGR+K A + D
Sbjct: 110 FKQWYLQHYGVEIGRKK-----------------------------------KTAAAKKD 134
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
E E K+S V K + RQ+ ++ IEEQF G++L I S
Sbjct: 135 TPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISS 184
>sp|Q93VG5|RS81_ARATH 40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2
SV=1
Length = 222
Score = 124 bits (310), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 66/75 (88%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGN K+RALR+D GN+SWGSE TRKTR++DVVYNASNNELVRTKTLVK+AIV +DA P
Sbjct: 50 RGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAP 109
Query: 63 FRQWYETYYALPIGR 77
F+QWY ++Y + +GR
Sbjct: 110 FKQWYLSHYGVELGR 124
>sp|Q4N3P0|RS8_THEPA 40S ribosomal protein S8 OS=Theileria parva GN=RPS8 PE=3 SV=1
Length = 188
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 66/76 (86%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
RGGN K+RALR+D GNFSWGS+ TRKTR++DVVYNAS+NELVRTKTLVKNAIV +D T
Sbjct: 48 CRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPT 107
Query: 62 PFRQWYETYYALPIGR 77
PF+ W++T+Y L +G+
Sbjct: 108 PFKLWFKTHYGLELGK 123
>sp|Q9P7B2|RS8B_SCHPO 40S ribosomal protein S8-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps8b PE=1 SV=1
Length = 200
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 92/174 (52%), Gaps = 48/174 (27%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKK+RALR+D GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV IDA P
Sbjct: 49 RGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
FR WYET+Y + +G + GK TP
Sbjct: 109 FRVWYETHYGILMGSK--GKKATATPTP-------------------------------- 134
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSERTA 176
+SK V +K+ +R +KV+ A+E QF GR L +++S R
Sbjct: 135 -------------KSKHVQRKHSARLGDSKVDSALETQFAAGR-LYAVVSSRPG 174
>sp|Q54E24|RS8_DICDI 40S ribosomal protein S8 OS=Dictyostelium discoideum GN=rps8 PE=1
SV=1
Length = 211
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 94/170 (55%), Gaps = 43/170 (25%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGG++K+RALR+D GNFSW +E TRK RI++VVYNA++N+LVRT TLVK +IV IDATP
Sbjct: 53 RGGHQKFRALRLDTGNFSWATEKITRKCRILNVVYNATSNDLVRTNTLVKGSIVQIDATP 112
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
++QWYET+Y + +G++K+ K D
Sbjct: 113 YKQWYETHYGVVVGKKKSAKKD-------------------------------------- 134
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
EAE+ V K+S ++ K SR K ++ AIE Q GR I S
Sbjct: 135 --GEAEQVV---KKSASLLAKLASRAKGRVLDSAIESQIGEGRFFARITS 179
>sp|O14049|RS8A_SCHPO 40S ribosomal protein S8-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps8a PE=3 SV=1
Length = 200
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 94/174 (54%), Gaps = 48/174 (27%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGNKK+RALR+D GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV IDA P
Sbjct: 49 RGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
FR WYET+Y + +G + ++ T + +P
Sbjct: 109 FRVWYETHYGILMGSKG------KKATSTPNP---------------------------- 134
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSERTA 176
+SK V +K+ +R +KV+ A+E QF GR L +++S R
Sbjct: 135 -------------KSKHVQRKHSARLGDSKVDSALETQFAAGR-LYAVVSSRPG 174
>sp|P25204|RS8_LEIMA 40S ribosomal protein S8 OS=Leishmania major GN=RPS8A PE=3 SV=1
Length = 220
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 98/171 (57%), Gaps = 28/171 (16%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
RGGN K RALR+D GNF+W SE + R++DVVYNA++NELVRTKTLVKN IV +DA
Sbjct: 48 ARGGNFKIRALRLDTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAA 107
Query: 62 PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
PF++WY +Y + LD ++ +ST+ +V
Sbjct: 108 PFKRWYAKHYGI-----------------DLDADK----------KSTKAAVAAEKKGRK 140
Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
+ A++ +NK S K+ +++ R+++ +VE+AI +Q + GR+L I S
Sbjct: 141 SAHAAADKYDVNKA-SPKLQREWTRRRRNHRVEKAIADQLREGRVLARITS 190
>sp|Q4UFS9|RS8_THEAN 40S ribosomal protein S8 OS=Theileria annulata GN=RPS8 PE=3 SV=1
Length = 184
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 64/74 (86%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
RGGN K+RALR+D GNFSWGS+ TRKTR++DVVYNAS+NELVRTKTLVKNAIV +D T
Sbjct: 48 CRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPT 107
Query: 62 PFRQWYETYYALPI 75
PF+ W++T+Y + +
Sbjct: 108 PFKLWFKTHYGVEL 121
>sp|Q9ZT56|RS8_GRIJA 40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1
Length = 204
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 48/170 (28%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
RGGN K RALR++ GNF+WGSE T K+RI++VVYNASNNELVRT T VK I+ IDATP
Sbjct: 49 RGGNLKSRALRLESGNFAWGSEAFTSKSRILNVVYNASNNELVRTNTFVKGCIIQIDATP 108
Query: 63 FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
FRQ+Y +Y + IG++K G
Sbjct: 109 FRQYYHNHYGIDIGKKKAGD---------------------------------------- 128
Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
EE+ +K+ + K K+ ++R +++ I+E FQ+GR+ SI S
Sbjct: 129 -----EESKFSKRHAGKQEKRCQTR---LPLDEGIKELFQSGRLYASIAS 170
>sp|A3CSQ2|RS8E_METMJ 30S ribosomal protein S8e OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps8e PE=3 SV=1
Length = 125
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
T GGN+K RALR++ S + T+KT+I V N+++ VR K L K AI+
Sbjct: 46 TFGGNQKVRALRLEYATVSNPATGETKKTKIEAVEANSADPNYVRRKLLTKGAII 100
>sp|A0B8P7|RS8E_METTP 30S ribosomal protein S8e OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps8e PE=3 SV=1
Length = 127
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
TRGGN+K R L+ D + S T+ +I VV N +N VR + + A++
Sbjct: 46 TRGGNQKLRLLKADVASVSDPVTGATKLVKIETVVDNPANRHYVRRNIITRGAVI 100
>sp|Q2FU12|RS8E_METHJ 30S ribosomal protein S8e OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps8e PE=3 SV=1
Length = 125
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
T GGN K RALR + S T+K +I V NA+N VR L + AI+
Sbjct: 46 TYGGNNKVRALRCEYAAISNAKTGETKKVKIETVEENAANPNYVRRNLLTRGAII 100
>sp|A2STM4|RS8E_METLZ 30S ribosomal protein S8e OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps8e PE=3 SV=1
Length = 125
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%)
Query: 4 GGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
GGN K RALR + N S +K +I V NA+N VR + K AI+
Sbjct: 48 GGNTKVRALRCEFANVSDKKTGKVQKVKINSVAENAANPNYVRRNLMTKGAII 100
>sp|A7IAR0|RS8E_METB6 30S ribosomal protein S8e OS=Methanoregula boonei (strain 6A8)
GN=rps8e PE=3 SV=1
Length = 125
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
T GGN K R++R N + + T+K +I +V N +N VR L K AI+
Sbjct: 46 TTGGNTKIRSMRAQFANVTNLANGETKKVKIENVEENGANPNYVRRNLLTKGAII 100
>sp|A3DNX9|RS8E_STAMF 30S ribosomal protein S8e OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps8e PE=3 SV=1
Length = 128
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
RGGN K R R N + +E KTRI++VV SN + R + K IV
Sbjct: 49 RGGNLKIRLKRAVYVNVAVPNEGKVTKTRILEVVETPSNPQYARGNYITKGTIV 102
>sp|A5UNB3|RS8E_METS3 30S ribosomal protein S8e OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rps8e PE=3 SV=1
Length = 125
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIID---VVYNASNNELVRTKTLVKNAIV 56
TRGGN+K R ++ N ++ T K++++D V+ N++N VR + K AIV
Sbjct: 47 TRGGNEKLRLATANKMNL---TDPATGKSQVVDVLGVIENSANPNYVRRNIITKGAIV 101
>sp|A6UWP2|RS8E_META3 30S ribosomal protein S8e OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rps8e PE=3 SV=1
Length = 128
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 4 GGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
GGNKK + LR + N +K I +VV N +N +R + K AI+
Sbjct: 50 GGNKKVKLLRTNYANVMDPKTNTCKKVSISNVVGNDANKHYIRRNIITKGAII 102
>sp|O95996|APC2_HUMAN Adenomatous polyposis coli protein 2 OS=Homo sapiens GN=APC2 PE=1
SV=1
Length = 2303
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 72 ALPIGRRKTGK-LDVQQLTPSLDPEEYTLYVPVVVTRSTELSVL 114
A+P RR G+ L V+ TPS E Y P+V++R + +S L
Sbjct: 1125 AIPAPRRNRGRGLGVEDATPSSSSENYVQETPLVLSRCSSVSSL 1168
>sp|Q9UZL4|RS8E_PYRAB 30S ribosomal protein S8e OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps8e PE=3 SV=1
Length = 127
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
T GGNKK R N + RK RII V+ N +N + R + K AI+
Sbjct: 48 TYGGNKKVRLTAAAYANV-FDKSGKGRKVRIIRVIENPANRQFARRNIITKGAII 101
>sp|Q4CTY5|SLX12_TRYCC Structure-specific endonuclease subunit SLX1 homolog 2
OS=Trypanosoma cruzi (strain CL Brener)
GN=Tc00.1047053511881.30 PE=3 SV=1
Length = 530
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 131 VLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSERTAVRQAK 181
V + KR + K++ RQ+ K+E A+ E+ Q R+ S L+ER + R+AK
Sbjct: 375 VHDLKRRAVLEKRWMERQRREKIEAALAERLQ--RLQNSSLTERKSRRKAK 423
>sp|A2BK08|RS8E_HYPBU 30S ribosomal protein S8e OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rps8e PE=3 SV=1
Length = 136
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%)
Query: 3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
RGGN K R R N RK RI+ VV +N R +VK I+
Sbjct: 50 RGGNYKIRLKRAAYANVIDPETNTARKVRILRVVETPANPHYARANIIVKGTII 103
>sp|Q8U1Y5|RS8E_PYRFU 30S ribosomal protein S8e OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps8e PE=1 SV=1
Length = 127
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
T GGN+K R N + RK RII V+ N +N + R + K AI+
Sbjct: 48 TYGGNRKVRLTAAAYANV-FDKSGKGRKVRIIRVIENPANRQFARRNIITKGAII 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,750,628
Number of Sequences: 539616
Number of extensions: 2576389
Number of successful extensions: 8420
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8338
Number of HSP's gapped (non-prelim): 94
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)