Query psy15650
Match_columns 211
No_of_seqs 175 out of 337
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 18:07:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00148 40S ribosomal protein 100.0 2.5E-69 5.4E-74 462.1 13.5 142 2-186 48-189 (205)
2 KOG3283|consensus 100.0 5.4E-69 1.2E-73 454.7 9.0 136 2-186 48-183 (200)
3 PF01201 Ribosomal_S8e: Riboso 100.0 1.2E-33 2.6E-38 228.1 6.7 62 2-63 51-112 (132)
4 TIGR00307 S8e ribosomal protei 100.0 1E-31 2.2E-36 216.7 8.9 59 2-60 47-105 (127)
5 PRK04049 30S ribosomal protein 100.0 3.3E-31 7.2E-36 213.8 8.8 58 2-59 47-104 (127)
6 COG2007 RPS8A Ribosomal protei 100.0 1.6E-28 3.5E-33 198.5 7.9 59 1-59 47-105 (127)
7 PTZ00388 40S ribosomal protein 99.6 3.8E-16 8.3E-21 135.8 6.6 51 11-61 138-188 (223)
8 KOG3163|consensus 96.0 0.004 8.7E-08 55.8 2.3 53 11-63 175-227 (260)
9 PF12433 PV_NSP1: Parvovirus n 71.9 3.1 6.7E-05 32.3 2.1 28 179-207 37-64 (80)
10 PF05848 CtsR: Firmicute trans 61.6 4.4 9.4E-05 34.3 1.3 15 180-194 53-69 (152)
11 PHA02769 hypothetical protein; 53.5 6 0.00013 33.4 0.8 21 57-78 62-82 (154)
12 PF08011 DUF1703: Protein of u 50.3 36 0.00077 25.7 4.5 53 157-209 10-73 (105)
13 PF04057 Rep-A_N: Replication 40.9 43 0.00094 25.8 3.7 25 36-60 54-78 (101)
14 cd04477 RPA1N RPA1N: A subfami 36.5 19 0.00042 27.7 1.2 23 38-60 54-76 (97)
15 COG4463 CtsR Transcriptional r 34.6 22 0.00048 30.5 1.4 39 156-197 30-72 (153)
16 PF09064 Tme5_EGF_like: Thromb 30.4 30 0.00065 23.1 1.2 18 172-189 15-32 (34)
17 KOG1233|consensus 27.7 26 0.00056 35.0 0.7 24 60-83 80-103 (613)
18 PF08309 LVIVD: LVIVD repeat; 27.4 1.2E+02 0.0026 20.3 3.7 38 5-47 2-39 (42)
19 PF04694 Corona_3: Coronavirus 25.2 35 0.00076 25.2 0.9 11 160-170 30-40 (60)
20 PRK15368 pathogenicity island 24.3 40 0.00086 28.2 1.1 17 181-197 72-88 (127)
21 PF07313 DUF1460: Protein of u 23.5 58 0.0013 28.7 2.1 48 152-200 145-192 (216)
22 PF02558 ApbA: Ketopantoate re 20.9 48 0.001 25.3 0.9 45 151-196 104-148 (151)
No 1
>PTZ00148 40S ribosomal protein S8; Provisional
Probab=100.00 E-value=2.5e-69 Score=462.15 Aligned_cols=142 Identities=55% Similarity=0.842 Sum_probs=135.5
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccchhhhhhhcccccccccCC
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTG 81 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPFrqWye~hY~~~lg~kk~~ 81 (211)
|||||.|+||||+|+|||+||++++++||+|++||||||||||||||||||||||+||++||||||++|||+|||+++..
T Consensus 48 ~RGGN~K~Ralr~~~gNv~~~se~~tkk~kIl~Vv~N~sNne~vRrniitKGAII~tda~Pfrqwy~~hy~~~lg~kk~~ 127 (205)
T PTZ00148 48 CRGGNFKFRALRLDTGNFSWGSQGIAKKTRILDVVYNASNNELVRTKTLVKNAIVQIDAAPFKQWYAKHYGIDLGKKKKY 127 (205)
T ss_pred ccCCceeeEEEeecceEEeecCCCeEEeeEEEEEEecCcCHHHHhhcceeeceEEeeccchHHHHHHHhhCccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred cccccccCCCCCccccccccceeeeccchhhhhhhhhccCCCchHHHHHHHhhhcchHHHHHHHHHhhhccccHHHHHHH
Q psy15650 82 KLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQF 161 (211)
Q Consensus 82 k~~~~~~~~~~~~~~~~~~~~~v~~~~~e~~~~~~a~~~~~~~t~~e~~~~~kk~Sk~v~kK~~~R~k~~kvd~~leeQF 161 (211)
+ ++ |++.+++|+|+++++||+.|+++++||++|+|||
T Consensus 128 ~------------------------------------------~~-~~~~~~~k~s~~~~kk~~~r~~~~~~~~~leeqf 164 (205)
T PTZ00148 128 K------------------------------------------KE-EENKKAKKKSESLVAKLEVRKKNHKIDKALLEQF 164 (205)
T ss_pred c------------------------------------------cc-hhhhhhhhhhHHHHHHHHHhhhhccccHHHHHHH
Confidence 3 12 4455789999999999999999999999999999
Q ss_pred hcCceEEEEeecCCcccccceeeee
Q psy15650 162 QTGRILVSILSERTAVRQAKFHAVD 186 (211)
Q Consensus 162 ~~GRllA~IsSRPGQ~GradG~ile 186 (211)
++|||||||+|||||||||||||||
T Consensus 165 ~~GrllA~IsSRPGQ~Gr~dGyILE 189 (205)
T PTZ00148 165 QSGRLLARISSRPGQSGRADGYILE 189 (205)
T ss_pred hhCeEEEEEeCCCCCccceeEEEEe
Confidence 9999999999999999999999999
No 2
>KOG3283|consensus
Probab=100.00 E-value=5.4e-69 Score=454.70 Aligned_cols=136 Identities=62% Similarity=0.955 Sum_probs=131.5
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccchhhhhhhcccccccccCC
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTG 81 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPFrqWye~hY~~~lg~kk~~ 81 (211)
|||||.||||||+|+|||+|+|||+++||||++||||||||||||||||||+|||+||++|||||||+|||+|||+||..
T Consensus 48 vRGGN~KyrALRlD~Gnfsw~Se~~trktri~dvvY~~snneLVRT~TL~k~aiV~ida~Pfrqwyeshy~~~lg~kk~~ 127 (200)
T KOG3283|consen 48 VRGGNKKYRALRLDMGNFSWGSEGTTRKTRILDVVYHPSNNELVRTNTLTKSAIVQIDAAPFRQWYESHYGLPLGRKKNK 127 (200)
T ss_pred ecCCchhhheeeeccCcccccccceeeeeeeeeeEecCCccceeeecchhhceEEEeccchHHHHHHHhhccccccccCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred cccccccCCCCCccccccccceeeeccchhhhhhhhhccCCCchHHHHHHHhhhcchHHHHHHHHHhhhccccHHHHHHH
Q psy15650 82 KLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQF 161 (211)
Q Consensus 82 k~~~~~~~~~~~~~~~~~~~~~v~~~~~e~~~~~~a~~~~~~~t~~e~~~~~kk~Sk~v~kK~~~R~k~~kvd~~leeQF 161 (211)
. +++++|+++++||++|+++++||++|+|||
T Consensus 128 ~-------------------------------------------------~~~k~sk~~~rk~~~r~~~a~vds~l~eqF 158 (200)
T KOG3283|consen 128 I-------------------------------------------------LNKKKSKHVQRKYAERQKNAKVDSSLEEQF 158 (200)
T ss_pred c-------------------------------------------------ccchhhHHHHHHHHHhhccccccHHHHHHH
Confidence 2 468999999999999999999999999999
Q ss_pred hcCceEEEEeecCCcccccceeeee
Q psy15650 162 QTGRILVSILSERTAVRQAKFHAVD 186 (211)
Q Consensus 162 ~~GRllA~IsSRPGQ~GradG~ile 186 (211)
++|||||||+|||||||||||||||
T Consensus 159 ~~GrL~A~isSrpGQ~Gradgyile 183 (200)
T KOG3283|consen 159 AAGRLYACISSRPGQCGRADGYILE 183 (200)
T ss_pred hcCcEEEEEeCCCCcccccceeeec
Confidence 9999999999999999999999987
No 3
>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []. One of these families, S8e, consists of a number of proteins with either about 220 amino acids (in eukaryotes) or about 125 amino acids (in archaea). This entry also contains proteins annotated as NSA2, which are though to be involved in ribosomal biogenesis of the 60S ribosomal subunit, having a role in the quality control of pre-60S particles. They are a component of the pre-66S ribosomal particle. ; PDB: 2KCY_A 2KCP_A 3U5G_I 3U5C_I 2KCO_A 2XZM_2 2XZN_2.
Probab=100.00 E-value=1.2e-33 Score=228.09 Aligned_cols=62 Identities=52% Similarity=0.799 Sum_probs=57.2
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccc
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPF 63 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPF 63 (211)
+||||.|+|+||+++|||+||++++++|++|++|+||||||+|||||||||||||+||++||
T Consensus 51 ~rGGn~K~r~lr~~~anv~~~~~~~t~k~~I~~V~~Npan~~~vR~~iitKGaII~~d~s~l 112 (132)
T PF01201_consen 51 VRGGNRKIRALRLDYANVSWPSEGKTKKVKIISVVYNPANNEYVRRNIITKGAIIETDVSEL 112 (132)
T ss_dssp TSSS-EEEEECCESEEEEEETTTTEEEEEEEEEECSSSSTHHHHHTTBB-TT-EEEEESHTS
T ss_pred ccCCcEeeeeeeecccEEEecccCceEEeeeEEEEEcCCChhhhhcCceecceEEEEeeccc
Confidence 69999999999999999999999999999999999999999999999999999999999744
No 4
>TIGR00307 S8e ribosomal protein S8.e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.
Probab=99.97 E-value=1e-31 Score=216.67 Aligned_cols=59 Identities=44% Similarity=0.503 Sum_probs=57.9
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccC
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDA 60 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~ 60 (211)
+||||+|+||||+|+|||+||++++++|++|++|+||||||||||||||||||||+||+
T Consensus 47 ~rGGn~K~Ralr~~~~Nv~~~~~~~t~k~kIl~Vv~NpaN~~yvR~niitKGaIIetd~ 105 (127)
T TIGR00307 47 TRGGNKKVRLLRDETANVSDPETGKVKKVEIAGVVENPANNHYVRRNVITKGAIVETDI 105 (127)
T ss_pred cCCCceEEEEEEeeeeEEecccCCeEEEEEEEEEEECCCCHHHhhcCcEecceEEEEee
Confidence 79999999999999999999999999999999999999999999999999999999984
No 5
>PRK04049 30S ribosomal protein S8e; Validated
Probab=99.97 E-value=3.3e-31 Score=213.81 Aligned_cols=58 Identities=34% Similarity=0.482 Sum_probs=57.2
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEcc
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVID 59 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD 59 (211)
+||||.|+||||+|+|||+||++++++|++|++|+||||||||||||||||||||+||
T Consensus 47 ~rGGn~K~R~lr~~~~Nv~~~~~~~tkk~kI~~Vv~N~aN~~yvRrniitKGaII~te 104 (127)
T PRK04049 47 VRGGNRKVRLLRANYANVADPKTGKTKKVKILTVVENPANPHYARRNIITKGAIIETE 104 (127)
T ss_pred ccCCceEEEEEEecceEEeecccCeEEEEEEEEEEECCCCHHHhhcCCEecceEEEec
Confidence 7999999999999999999999999999999999999999999999999999999986
No 6
>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-28 Score=198.46 Aligned_cols=59 Identities=44% Similarity=0.527 Sum_probs=57.3
Q ss_pred CcccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEcc
Q psy15650 1 TTRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVID 59 (211)
Q Consensus 1 ~vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD 59 (211)
.+||||+|+||+|++++||+||+++.+++++|++|+|||+|+||+|||||||||||+||
T Consensus 47 r~rGgn~K~r~~~~~~aNV~~p~~g~~~k~~Ii~V~~nPan~~y~rrniitKGaiI~t~ 105 (127)
T COG2007 47 RTRGGNFKVRALRAKTANVSDPETGKTKKAKIIGVVENPANPEYVRRNIITKGAIIETE 105 (127)
T ss_pred EeecCCeEEEEEEeccceecccccCcEEEEEEEEEEcCCCChHHhhccceecceEEEEe
Confidence 37999999999999999999999999999999999999999999999999999999986
No 7
>PTZ00388 40S ribosomal protein S8-like; Provisional
Probab=99.63 E-value=3.8e-16 Score=135.77 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=49.3
Q ss_pred EEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCc
Q psy15650 11 ALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61 (211)
Q Consensus 11 aLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~t 61 (211)
.||++++||+||+.+.+.+++|++|++||+|++|+|+|+|||||||+|++.
T Consensus 138 glr~~~AnVt~p~~~~t~~~kIi~V~kNPan~~Ytr~nvITKGTIIEtnvs 188 (223)
T PTZ00388 138 GLRFKKAHVTHPELKTTFYLDIIGVKKNPQSNLYTSLGVITKGTIIEVNVS 188 (223)
T ss_pred hhhcceeEEeccccCcEEEEEEEEEeeCCCChhhhhcCceeeeeEEEeehh
Confidence 589999999999999999999999999999999999999999999999875
No 8
>KOG3163|consensus
Probab=96.01 E-value=0.004 Score=55.76 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=50.3
Q ss_pred EEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccc
Q psy15650 11 ALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPF 63 (211)
Q Consensus 11 aLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPF 63 (211)
+||...+||+-|.-++|-.-.|++|.-||+++-|---++||||+||+++..+.
T Consensus 175 ~lRfkkAhVthpEL~~Tf~LpIigvKKNP~sp~yT~LGvitkGTviEvnVseL 227 (260)
T KOG3163|consen 175 GLRFKKAHVTHPELKVTFCLPIIGVKKNPSSPMYTSLGVITKGTVIEVNVSEL 227 (260)
T ss_pred hhhhhhccccChhhceEEEeeeeEeccCCCCcceeecceeecceEEEEecccc
Confidence 57888999999999999999999999999999999999999999999999765
No 9
>PF12433 PV_NSP1: Parvovirus non-structural protein 1 ; InterPro: IPR021076 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents a domain of the parvovirus non-capsid protein 1. It is found immediately N-terminal to the helicase domain and its function is unknown. Parvoviral NS1 regulates host gene expression through histone acetylation [].
Probab=71.95 E-value=3.1 Score=32.29 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=23.7
Q ss_pred ccceeeeecCCCceEEeecCchhhhHHHh
Q psy15650 179 QAKFHAVDSGSGGWWFESKSSSERTAVRQ 207 (211)
Q Consensus 179 radG~ile~~~~~~~~~~~~~~~~~~~~~ 207 (211)
+-|||.+ ||.|||++.--...||-+||.
T Consensus 37 ~mdGYy~-agngG~i~Nfl~~~eR~~v~k 64 (80)
T PF12433_consen 37 GMDGYYA-AGNGGWIDNFLKEKERKLVSK 64 (80)
T ss_pred CCCceEE-cCCCceeechhhhHHHHHHHH
Confidence 6799976 789999998777789999884
No 10
>PF05848 CtsR: Firmicute transcriptional repressor of class III stress genes (CtsR); InterPro: IPR008463 This family consists of several Firmicute transcriptional repressor of class III stress gene (CtsR) proteins. CtsR of Listeria monocytogenes negatively regulates the clpC, clpP and clpE genes belonging to the CtsR regulon [].; PDB: 3H0D_A.
Probab=61.59 E-value=4.4 Score=34.33 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=12.0
Q ss_pred cceeeeec--CCCceEE
Q psy15650 180 AKFHAVDS--GSGGWWF 194 (211)
Q Consensus 180 adG~ile~--~~~~~~~ 194 (211)
-.||++|| |.|||+=
T Consensus 53 e~GY~VESrRGGGGyIR 69 (152)
T PF05848_consen 53 ERGYIVESRRGGGGYIR 69 (152)
T ss_dssp CCTEEEEEE-STT-EEE
T ss_pred CCCeEEEeccCCCceEE
Confidence 47999999 9999974
No 11
>PHA02769 hypothetical protein; Provisional
Probab=53.50 E-value=6 Score=33.44 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=18.4
Q ss_pred EccCccchhhhhhhcccccccc
Q psy15650 57 VIDATPFRQWYETYYALPIGRR 78 (211)
Q Consensus 57 ~tD~tPFrqWye~hY~~~lg~k 78 (211)
.-|.+||| |....||+|+.|.
T Consensus 62 lhd~~pfr-~ia~~~~ip~drs 82 (154)
T PHA02769 62 LHDNTPFR-FIAQQYNIPNDRS 82 (154)
T ss_pred eccCCchh-hHHHHhCCCcchH
Confidence 45999998 9999999999864
No 12
>PF08011 DUF1703: Protein of unknown function (DUF1703); InterPro: IPR012547 This family contains many hypothetical bacterial proteins.
Probab=50.25 E-value=36 Score=25.74 Aligned_cols=53 Identities=11% Similarity=-0.033 Sum_probs=37.0
Q ss_pred HHHHHhcCceEEEEeecCCcccccceeee---ecCCCceEEeec-------C-chhhhHHHhhh
Q psy15650 157 IEEQFQTGRILVSILSERTAVRQAKFHAV---DSGSGGWWFESK-------S-SSERTAVRQAK 209 (211)
Q Consensus 157 leeQF~~GRllA~IsSRPGQ~GradG~il---e~~~~~~~~~~~-------~-~~~~~~~~~~~ 209 (211)
|.--|.....+-..+-+....||+|=.++ ....-+|+||-| . .+...|++|.+
T Consensus 10 ~~~~l~~~~~y~v~sE~e~~~Gr~Dl~l~~~~~~~~~~~IiElK~~~~~~~~~~~~~~Al~QI~ 73 (105)
T PF08011_consen 10 LLGYLSLSSGYEVKSERESGKGRIDLVLEPPKPTPKYIYIIELKYAKSKESLEKSAEEALEQIK 73 (105)
T ss_pred HHHHHHHcCCcEEEEEecCCCCeEEEEEEEccCCCCeEEEEEEEEcccccccccccHHHHHHHH
Confidence 44444434556677888999999997666 146779999999 2 34557888864
No 13
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=40.88 E-value=43 Score=25.75 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.7
Q ss_pred eecCCCchhhhhcccccceEEEccC
Q psy15650 36 VYNASNNELVRTKTLVKNAIVVIDA 60 (211)
Q Consensus 36 VyNpSNnelVRtntLtKGAIV~tD~ 60 (211)
+--+.=|++|..|.|.+||||++.-
T Consensus 54 mLatqln~lv~~g~l~~~siirl~~ 78 (101)
T PF04057_consen 54 MLATQLNHLVESGELQKGSIIRLKQ 78 (101)
T ss_dssp EESGGGHHHHHTTSSSTT-EEEEEE
T ss_pred HhHHHhHHHHhcCCcccCCEEEEeE
Confidence 3345568999999999999999875
No 14
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=36.51 E-value=19 Score=27.66 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.6
Q ss_pred cCCCchhhhhcccccceEEEccC
Q psy15650 38 NASNNELVRTKTLVKNAIVVIDA 60 (211)
Q Consensus 38 NpSNnelVRtntLtKGAIV~tD~ 60 (211)
...=|++|..|.|.+|+||++.-
T Consensus 54 atqln~~v~~g~l~~~sIirl~~ 76 (97)
T cd04477 54 ATQLNPLVESGQLQRGSIIRLKR 76 (97)
T ss_pred hhhhhhHHhcCCccCCcEEEECe
Confidence 34568999999999999999864
No 15
>COG4463 CtsR Transcriptional repressor of class III stress genes [Transcription]
Probab=34.56 E-value=22 Score=30.51 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=23.2
Q ss_pred HHHHHHhc--CceEEEEeecCCcccccceeeeec--CCCceEEeec
Q psy15650 156 AIEEQFQT--GRILVSILSERTAVRQAKFHAVDS--GSGGWWFESK 197 (211)
Q Consensus 156 ~leeQF~~--GRllA~IsSRPGQ~GradG~ile~--~~~~~~~~~~ 197 (211)
.|.+||+- -.+==.|..|-.- -.||++|| |.|||+=-.|
T Consensus 30 elAd~FqcVPSQINYVIkTRFT~---erGY~VESKRGGGGYIRI~K 72 (153)
T COG4463 30 ELADQFQCVPSQINYVIKTRFTE---ERGYLVESKRGGGGYIRIIK 72 (153)
T ss_pred HHhhhcccchhheeeeeeeeeec---ccceEEEeecCCCceEEEEE
Confidence 36666752 1233344555443 36999999 8889974433
No 16
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=30.42 E-value=30 Score=23.10 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=15.2
Q ss_pred ecCCcccccceeeeecCC
Q psy15650 172 SERTAVRQAKFHAVDSGS 189 (211)
Q Consensus 172 SRPGQ~GradG~ile~~~ 189 (211)
.-|+||-=.|||||+-|+
T Consensus 15 n~~~~C~CPeGyIlde~~ 32 (34)
T PF09064_consen 15 NSPGQCFCPEGYILDEGS 32 (34)
T ss_pred CCCCceeCCCceEecCCc
Confidence 457899999999999875
No 17
>KOG1233|consensus
Probab=27.73 E-value=26 Score=35.01 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=19.8
Q ss_pred CccchhhhhhhcccccccccCCcc
Q psy15650 60 ATPFRQWYETYYALPIGRRKTGKL 83 (211)
Q Consensus 60 ~tPFrqWye~hY~~~lg~kk~~k~ 83 (211)
+--||.|+|+++|+++|.++..++
T Consensus 80 lP~F~~W~en~lgi~v~~~~~~k~ 103 (613)
T KOG1233|consen 80 LPHFRPWFENYLGIDVGFVSAQKL 103 (613)
T ss_pred CccchHHHHhhcCccccceehhhc
Confidence 345999999999999999885553
No 18
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=27.35 E-value=1.2e+02 Score=20.25 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=25.5
Q ss_pred CceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhh
Q psy15650 5 GNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRT 47 (211)
Q Consensus 5 GN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRt 47 (211)
|..---.+.-+++=+++...|. .|.|| -||+||.++.+
T Consensus 2 G~a~~v~v~g~yaYva~~~~Gl----~IvDI-SnPs~P~~v~~ 39 (42)
T PF08309_consen 2 GDARDVAVSGNYAYVADGNNGL----VIVDI-SNPSNPVLVGS 39 (42)
T ss_pred ceEEEEEEECCEEEEEeCCCCE----EEEEC-CCCCCCEEEEE
Confidence 4444445666777777766664 57776 69999988753
No 19
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=25.24 E-value=35 Score=25.17 Aligned_cols=11 Identities=55% Similarity=1.099 Sum_probs=10.2
Q ss_pred HHhcCceEEEE
Q psy15650 160 QFQTGRILVSI 170 (211)
Q Consensus 160 QF~~GRllA~I 170 (211)
.|.+|+||.||
T Consensus 30 ef~tgkllVci 40 (60)
T PF04694_consen 30 EFKTGKLLVCI 40 (60)
T ss_pred EEecCcEEEEE
Confidence 49999999999
No 20
>PRK15368 pathogenicity island chaperone protein SpiC; Provisional
Probab=24.31 E-value=40 Score=28.25 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.2
Q ss_pred ceeeeecCCCceEEeec
Q psy15650 181 KFHAVDSGSGGWWFESK 197 (211)
Q Consensus 181 dG~ile~~~~~~~~~~~ 197 (211)
--|+||.-+||||+-+.
T Consensus 72 hDyAlQL~~~~~WL~c~ 88 (127)
T PRK15368 72 HDYAIQLTADGGWLNGY 88 (127)
T ss_pred hhheeEeccCcEEEEEE
Confidence 45899999999999753
No 21
>PF07313 DUF1460: Protein of unknown function (DUF1460); InterPro: IPR010846 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.; PDB: 2P1G_B 2IM9_A.
Probab=23.48 E-value=58 Score=28.74 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=35.2
Q ss_pred cccHHHHHHHhcCceEEEEeecCCcccccceeeeecCCCceEEeecCch
Q psy15650 152 KVEQAIEEQFQTGRILVSILSERTAVRQAKFHAVDSGSGGWWFESKSSS 200 (211)
Q Consensus 152 kvd~~leeQF~~GRllA~IsSRPGQ~GradG~ile~~~~~~~~~~~~~~ 200 (211)
+|++.++.++++|-++|.+++.+|===.--|.++.-+.| .+|---||.
T Consensus 145 ~i~~~~~~~i~~GDiI~i~t~~~GLDvsH~Giav~~~~~-l~l~hASs~ 192 (216)
T PF07313_consen 145 KINDKLLSQIKNGDIIAIVTNIKGLDVSHVGIAVWKNDG-LHLRHASSL 192 (216)
T ss_dssp HH-CCHHTTS-TT-EEEEEEECTTECEEEEEEEEEETTE-EEEEEEETT
T ss_pred HHhHHHHhcCCCCCEEEEEeCCCCCceeeEEEEEEECCe-EEEEeCCCC
Confidence 456778899999999999999999766666888888776 556555544
No 22
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=20.94 E-value=48 Score=25.25 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=37.1
Q ss_pred ccccHHHHHHHhcCceEEEEeecCCcccccceeeeecCCCceEEee
Q psy15650 151 AKVEQAIEEQFQTGRILVSILSERTAVRQAKFHAVDSGSGGWWFES 196 (211)
Q Consensus 151 ~kvd~~leeQF~~GRllA~IsSRPGQ~GradG~ile~~~~~~~~~~ 196 (211)
+-..+.|.+.|...++++++++ -|-.-..+|++...|+|.-||..
T Consensus 104 ~g~~~~l~~~~~~~~v~~g~~~-~g~~~~~~~~v~~~g~g~~~iG~ 148 (151)
T PF02558_consen 104 MGNEEVLAEYFPRPRVLGGVTT-IGAYRIGPGHVEHTGSGRTWIGA 148 (151)
T ss_dssp SSHHHHHHCHSTGSGEEEEEEE-EEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCcHHHHHHHcCCCcEEEEEEe-EeEEEcCCeEEEEecCCEEEEcc
Confidence 4456778888877899999988 78888899999999998888753
Done!