Query psy15650
Match_columns 211
No_of_seqs 175 out of 337
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 18:07:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_I RP19, S14, YS9, 40S rib 100.0 1.9E-70 6.5E-75 466.5 8.3 138 2-186 48-185 (200)
2 2xzm_2 40S ribosomal protein S 100.0 4.5E-70 1.5E-74 466.2 9.3 137 2-186 56-192 (208)
3 2kcp_A 30S ribosomal protein S 100.0 2E-37 6.9E-42 239.8 4.9 58 2-59 10-67 (98)
4 2kco_A 30S ribosomal protein S 100.0 1.1E-34 3.9E-39 234.2 6.7 58 2-59 48-105 (133)
5 3j20_J 30S ribosomal protein S 100.0 2.7E-29 9.2E-34 201.2 5.2 58 2-60 48-105 (127)
6 4fqj_A Hemagglutinin; monoclon 60.9 3.8 0.00013 37.0 2.1 34 166-199 193-250 (304)
7 3h0d_A CTSR; protein DNA compl 60.5 3 0.0001 34.3 1.3 16 180-195 52-69 (155)
8 3u65_B TP33 protein; tetratric 26.0 18 0.00063 30.9 0.7 17 171-187 65-81 (328)
9 2b29_A Replication protein A 7 25.0 25 0.00085 27.0 1.2 24 36-59 60-83 (123)
10 1v1c_A Obscurin; muscle, sarco 19.3 31 0.0011 25.1 0.6 13 184-196 34-46 (71)
No 1
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I
Probab=100.00 E-value=1.9e-70 Score=466.48 Aligned_cols=138 Identities=51% Similarity=0.787 Sum_probs=125.8
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccchhhhhhhcccccccccCC
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTG 81 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPFrqWye~hY~~~lg~kk~~ 81 (211)
|||||.|+||||+|+|||+||++|+++|++|++||||||||||||||||||||||+||+||||||||+|||+|||+|+..
T Consensus 48 ~RGGN~K~Ralr~d~~N~s~~se~~tkK~kI~~Vv~N~sNne~vRrn~LtKGaII~tDatPfrqwy~~hy~~~lg~kk~~ 127 (200)
T 3u5c_I 48 TRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNV 127 (200)
T ss_dssp CSSSCEEEEESSBCEEEEEEGGGTEEEEEECCEEEECSSCHHHHHTTCBCTTCEEECCCHHHHHHHHHHSSCCSCCC---
T ss_pred ccCCceeeeeEeeceeEEEeCCCCeEEEEeEEEEEEcCCChHhhhccceecceEEEccCchhhHHHHhhhCccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cccccccCCCCCccccccccceeeeccchhhhhhhhhccCCCchHHHHHHHhhhcchHHHHHHHHHhhhccccHHHHHHH
Q psy15650 82 KLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQF 161 (211)
Q Consensus 82 k~~~~~~~~~~~~~~~~~~~~~v~~~~~e~~~~~~a~~~~~~~t~~e~~~~~kk~Sk~v~kK~~~R~k~~kvd~~leeQF 161 (211)
+ ++ +++++|+++++||++|+++++||++|+|||
T Consensus 128 ~--------------------------------------------~~---~~~k~s~~~~~k~~~r~~~~~i~~~leeqf 160 (200)
T 3u5c_I 128 K--------------------------------------------EE---ETVAKSKNAERKWAARAASAKIESSVESQF 160 (200)
T ss_dssp -------------------------------------------------------CSHHHHHHHHSCSSCCCCHHHHHHH
T ss_pred c--------------------------------------------hh---hhhhhhHHHHHHHHHHHhhCCcCHHHHHHH
Confidence 2 11 247899999999999999999999999999
Q ss_pred hcCceEEEEeecCCcccccceeeee
Q psy15650 162 QTGRILVSILSERTAVRQAKFHAVD 186 (211)
Q Consensus 162 ~~GRllA~IsSRPGQ~GradG~ile 186 (211)
++|||||||+|||||||||||||||
T Consensus 161 ~~GrllA~isSRPGQ~GradGyiLE 185 (200)
T 3u5c_I 161 SAGRLYACISSRPGQSGRCDGYILE 185 (200)
T ss_dssp HTTCCEEEECSCHHHHSCCCEEECC
T ss_pred hhCcEEEEEecCCCCccccceeEEc
Confidence 9999999999999999999999998
No 2
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2
Probab=100.00 E-value=4.5e-70 Score=466.19 Aligned_cols=137 Identities=52% Similarity=0.794 Sum_probs=130.7
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccchhhhhhhcccccccccCC
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTG 81 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPFrqWye~hY~~~lg~kk~~ 81 (211)
|||||.|+||||+|+|||+||++++++|++|++||||||||||||||||||||||+||+||||||||+|||+|||+|+..
T Consensus 56 vRGGN~K~Ralrl~~gNfsw~se~~trK~kIl~VvyN~sNnelvRtntLtKgAIV~tDa~Pfrqwye~hy~~~lg~kk~~ 135 (208)
T 2xzm_2 56 VRGGHLKFRALRLCEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPFREWYKLHYGIDLGLKKDR 135 (208)
T ss_dssp CSSSCEEEEEEEESEEEEEETTTTEEEEEEEEEECCCSSCSHHHHTTCCCTTCEEEEESHHHHHHHHHHHSBCCSSGGGC
T ss_pred ccCCceeeeeeecceeEEEecCCCeEEEEEEEEEEecCcchHHHhhcccccccEEEccCchhHHHHHHhcCccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999842
Q ss_pred cccccccCCCCCccccccccceeeeccchhhhhhhhhccCCCchHHHHHHHhhhcchHHHHHHHHHhhhccccHHHHHHH
Q psy15650 82 KLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQF 161 (211)
Q Consensus 82 k~~~~~~~~~~~~~~~~~~~~~v~~~~~e~~~~~~a~~~~~~~t~~e~~~~~kk~Sk~v~kK~~~R~k~~kvd~~leeQF 161 (211)
. +++++++|+++++|| +|++++++|++|+|||
T Consensus 136 ~-----------------------------------------------~~~~~k~s~~~~kk~-~r~~~~~~~~~l~eqf 167 (208)
T 2xzm_2 136 T-----------------------------------------------VLGNKEKSRHVQKRV-KRTKAQALEKNIEEQF 167 (208)
T ss_dssp B-----------------------------------------------CCCSCCSSTTHHHHH-HHTTTCCCCHHHHHHH
T ss_pred c-----------------------------------------------cccchhhhHHHHHHH-HHhhhccccHHHHHHH
Confidence 1 134689999999999 9999999999999999
Q ss_pred hcCceEEEEeecCCcccccceeeee
Q psy15650 162 QTGRILVSILSERTAVRQAKFHAVD 186 (211)
Q Consensus 162 ~~GRllA~IsSRPGQ~GradG~ile 186 (211)
++|||||||+|||||||||||||||
T Consensus 168 ~~GrllA~isSRPGQ~GradGyiLE 192 (208)
T 2xzm_2 168 VSQRILACITSRPGQSGRADGYILE 192 (208)
T ss_dssp HHSEEEEEECSCHHHHSCCEEEECC
T ss_pred hhCcEEEEEecCCCCcccccEEEEe
Confidence 9999999999999999999999986
No 3
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=100.00 E-value=2e-37 Score=239.83 Aligned_cols=58 Identities=29% Similarity=0.310 Sum_probs=57.4
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEcc
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVID 59 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD 59 (211)
+||||+|+||||+++|||+||++++++|++|++|+||||||+|||||||||||||+||
T Consensus 10 ~rGGN~K~Ralr~~~aNv~~~~~~~t~k~~Ii~Vv~NpsN~~yvR~n~ltKGaII~~d 67 (98)
T 2kcp_A 10 TRGGNTKVRLASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETN 67 (98)
T ss_dssp CCCCCCCCCTTSCCCEEEECTTTCCEEEECEEESSCSCSSCTTCCSSCCCTTCEEEES
T ss_pred ccCCceEEEEEEeeeEEEEecccCeEEEEEEEEEEECCCChHHeecccEEeeeEEEec
Confidence 7999999999999999999999999999999999999999999999999999999998
No 4
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}
Probab=100.00 E-value=1.1e-34 Score=234.24 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=57.5
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEcc
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVID 59 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD 59 (211)
+||||+|+||||+++|||+||++++++|++|++|+||||||||||||||||||||+||
T Consensus 48 ~rGGN~K~r~lr~~~~nv~~~~~~~t~k~~I~~Vv~Npsn~~yvR~n~itKGaII~~~ 105 (133)
T 2kco_A 48 TLGGNFKVRLKYTTTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTE 105 (133)
T ss_dssp TCCCCCCCCCCCCCEEEEEETTTTEEEEEEEEEECSCCTTHHHHTTTCCCTTCEEEES
T ss_pred ccCCceeeeEeeeeeEEEEecccCeEEEEEEEEEEECCCChhheecccEeeeeEEEEe
Confidence 7999999999999999999999999999999999999999999999999999999999
No 5
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.95 E-value=2.7e-29 Score=201.25 Aligned_cols=58 Identities=33% Similarity=0.400 Sum_probs=56.2
Q ss_pred cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccC
Q psy15650 2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDA 60 (211)
Q Consensus 2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~ 60 (211)
+||||.|+||||+|+|||+| ++++++|++|++|+||||||||||||||||||||+||+
T Consensus 48 ~rGGN~K~ralr~~~aNvs~-s~~~t~k~~Ii~Vv~NpsN~~yvR~n~itKGaIIete~ 105 (127)
T 3j20_J 48 TYGGNRKVRLTAAAYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEI 105 (127)
T ss_dssp CTTSCEEEEEEEESBCCCCC-SSCCCCCCBBCCCCCCSSCSHHHHHTCCCSSCEEEBSS
T ss_pred ccCCceEEEEEEeccceEEe-ecCCEEEEEEEEEEECCCChhheEeccEecceEEEEcC
Confidence 79999999999999999999 99999999999999999999999999999999999654
No 6
>4fqj_A Hemagglutinin; monoclonal, immunoglobulin, viral protein-immune system COMP; HET: NAG BMA; 2.50A {Influenza b virus}
Probab=60.88 E-value=3.8 Score=37.00 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=24.7
Q ss_pred eEEEEeecC--------Cccccccee--eeecCC--------------CceEEeecCc
Q psy15650 166 ILVSILSER--------TAVRQAKFH--AVDSGS--------------GGWWFESKSS 199 (211)
Q Consensus 166 llA~IsSRP--------GQ~GradG~--ile~~~--------------~~~~~~~~~~ 199 (211)
..--|.+|| ||+||.|.| ||+-|. ++|.+.|+|.
T Consensus 193 ~~p~Ig~RP~v~~~~g~GQsGRi~~yWtilkPgDti~f~snGnlIAP~~~~~~~GkS~ 250 (304)
T 4fqj_A 193 YVSQIGSFPDQTEDGGLPQSGRIVVDYMMQKPGKTGTIVYQRGVLLPQKVWCASGRSK 250 (304)
T ss_dssp EECCCSCCCCCCSSCCSCCSCEEEEEEEEECTTCCEEEEECTTEEEECSCEEEESCCE
T ss_pred ECccCCCCCcccccCCCCccceEEEEEEEEcCCCceEEeecCCeeccchhheeccCcc
Confidence 344578999 999999988 566553 4577777764
No 7
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=60.50 E-value=3 Score=34.27 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.3
Q ss_pred cceeeeec--CCCceEEe
Q psy15650 180 AKFHAVDS--GSGGWWFE 195 (211)
Q Consensus 180 adG~ile~--~~~~~~~~ 195 (211)
-.||++|| |.|||+==
T Consensus 52 e~GY~VESkRGGGGyIRI 69 (155)
T 3h0d_A 52 ERGYIVESKRGGGGYIRI 69 (155)
T ss_dssp GGTEEEEEECSTTCEEEE
T ss_pred CCceEEEeecCCCceEEE
Confidence 47999999 89999843
No 8
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=26.01 E-value=18 Score=30.90 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=13.9
Q ss_pred eecCCcccccceeeeec
Q psy15650 171 LSERTAVRQAKFHAVDS 187 (211)
Q Consensus 171 sSRPGQ~GradG~ile~ 187 (211)
.+||||.|.+|..++-+
T Consensus 65 ~~~~~~~G~id~~~~~~ 81 (328)
T 3u65_B 65 SSRPGQAAPLDGAVFSC 81 (328)
T ss_dssp CSSTTSCCSCSEEEECH
T ss_pred hhccCCCCceeEEEecc
Confidence 46999999999877654
No 9
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=24.97 E-value=25 Score=26.97 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.9
Q ss_pred eecCCCchhhhhcccccceEEEcc
Q psy15650 36 VYNASNNELVRTKTLVKNAIVVID 59 (211)
Q Consensus 36 VyNpSNnelVRtntLtKGAIV~tD 59 (211)
+--..=|++|..|.|.+||||++.
T Consensus 60 mLatqln~~v~~g~l~~~sIirl~ 83 (123)
T 2b29_A 60 MLATQLNPLVEEEQLSSNCVCQIH 83 (123)
T ss_dssp EECGGGHHHHHTTSSCTTCEEEEE
T ss_pred hhHHHHHHHHhcCCccCCCEEEEE
Confidence 334456899999999999999993
No 10
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=19.26 E-value=31 Score=25.06 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=9.9
Q ss_pred eeecCCCceEEee
Q psy15650 184 AVDSGSGGWWFES 196 (211)
Q Consensus 184 ile~~~~~~~~~~ 196 (211)
||+.+..||||-.
T Consensus 34 Vl~k~~~gwW~vr 46 (71)
T 1v1c_A 34 VLDAAHPLRWLVR 46 (71)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEcCCCCEEEEE
Confidence 5677778999964
Done!