Query psy15650
Match_columns 211
No_of_seqs 175 out of 337
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 18:07:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15650.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15650hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iufa1 a.4.1.7 (A:-2-75) Ars- 46.2 2.4 0.00018 29.9 0.5 15 63-77 36-50 (78)
2 d1dx5i2 g.3.11.1 (I:388-422) T 42.7 4.9 0.00036 24.5 1.4 18 172-189 15-32 (35)
3 d2b3ga1 b.40.4.3 (A:3-114) Rep 24.5 34 0.0025 24.2 3.8 26 35-60 54-79 (112)
4 d1gefa_ c.52.1.18 (A:) Archaea 21.7 32 0.0023 24.5 3.1 32 167-201 21-52 (120)
5 d1gdna_ b.47.1.2 (A:) Trypsin( 20.2 15 0.0011 25.8 0.9 16 55-70 208-223 (224)
6 d1iica1 d.108.1.2 (A:34-218) N 19.6 17 0.0012 28.2 1.2 25 162-187 108-132 (185)
7 d1opka1 b.34.2.1 (A:83-139) Ab 18.5 29 0.0021 21.3 2.0 15 184-198 27-41 (57)
8 d1k7ka_ c.51.4.1 (A:) Hypothet 16.9 20 0.0015 27.4 1.1 28 166-193 133-167 (209)
9 d1wlpb1 b.34.2.1 (B:229-281) p 16.6 28 0.0021 21.1 1.5 14 183-196 26-39 (53)
10 d1wfwa_ b.34.2.1 (A:) Kalirin- 16.5 30 0.0022 22.0 1.7 13 183-195 33-45 (74)
No 1
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=46.23 E-value=2.4 Score=29.89 Aligned_cols=15 Identities=13% Similarity=0.612 Sum_probs=13.2
Q ss_pred chhhhhhhccccccc
Q psy15650 63 FRQWYETYYALPIGR 77 (211)
Q Consensus 63 FrqWye~hY~~~lg~ 77 (211)
.++|||.+|+.+|..
T Consensus 36 l~~WFe~~y~q~Isq 50 (78)
T d1iufa1 36 LIEWFREKFGKDISQ 50 (78)
T ss_dssp HHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHCCcchH
Confidence 579999999999984
No 2
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.73 E-value=4.9 Score=24.49 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=15.1
Q ss_pred ecCCcccccceeeeecCC
Q psy15650 172 SERTAVRQAKFHAVDSGS 189 (211)
Q Consensus 172 SRPGQ~GradG~ile~~~ 189 (211)
+-|+-|-=.+||||+-||
T Consensus 15 ~~p~~C~CPeGyIldeg~ 32 (35)
T d1dx5i2 15 NTQASCECPEGYILDDGF 32 (35)
T ss_dssp TSTTCEECCTTEEEETTT
T ss_pred CCCCcccCCCceEecccc
Confidence 467788888999999886
No 3
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.49 E-value=34 Score=24.24 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.7
Q ss_pred EeecCCCchhhhhcccccceEEEccC
Q psy15650 35 VVYNASNNELVRTKTLVKNAIVVIDA 60 (211)
Q Consensus 35 VVyNpSNnelVRtntLtKGAIV~tD~ 60 (211)
.+--..=|++|..|.|.+||||++.-
T Consensus 54 amLatqln~~v~~g~l~~~sii~l~~ 79 (112)
T d2b3ga1 54 FMLATQLNPLVEEEQLSSNCVCQIHR 79 (112)
T ss_dssp EEECGGGHHHHHTTSSCTTCEEEEEE
T ss_pred hhhhhhhhhhhhcCCccCCCEEEEeE
Confidence 44555668999999999999999865
No 4
>d1gefa_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.67 E-value=32 Score=24.48 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=22.3
Q ss_pred EEEEeecCCcccccceeeeecCCCceEEeecCchh
Q psy15650 167 LVSILSERTAVRQAKFHAVDSGSGGWWFESKSSSE 201 (211)
Q Consensus 167 lA~IsSRPGQ~GradG~ile~~~~~~~~~~~~~~~ 201 (211)
++++.+ ||| |..|.+.+. |.--|-+|-|++..
T Consensus 21 ~~~~R~-~~s-g~~D~~a~~-~~~~~~IEvK~~~~ 52 (120)
T d1gefa_ 21 FAVVRS-AGS-KKVDLVAGN-GKKYLCIEVKVTKK 52 (120)
T ss_dssp CEEEEB-GGG-SSCSEEEEC-SSCEEEEEEEEESS
T ss_pred CcEEEC-CCC-CCCCcccCC-CCceEEEEcCCccc
Confidence 455543 666 778988775 55678899998764
No 5
>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}
Probab=20.16 E-value=15 Score=25.82 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=14.1
Q ss_pred EEEccCccchhhhhhh
Q psy15650 55 IVVIDATPFRQWYETY 70 (211)
Q Consensus 55 IV~tD~tPFrqWye~h 70 (211)
-|-|++.+|+.|.|+|
T Consensus 208 ~vyt~v~~y~~WIe~~ 223 (224)
T d1gdna_ 208 GVYASVGALRSFIDTY 223 (224)
T ss_dssp EEEEETTTTHHHHHHH
T ss_pred EEEEEHHHHHHHHHHC
Confidence 3689999999999987
No 6
>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.58 E-value=17 Score=28.21 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=18.7
Q ss_pred hcCceEEEEeecCCcccccceeeeec
Q psy15650 162 QTGRILVSILSERTAVRQAKFHAVDS 187 (211)
Q Consensus 162 ~~GRllA~IsSRPGQ~GradG~ile~ 187 (211)
.+++|+|+|++||=.+ +..|.++.+
T Consensus 108 ~~~KLvg~Is~~P~~i-~i~~~~~~~ 132 (185)
T d1iica1 108 ETQKLVAFISAIPVTL-GVRGKQVPS 132 (185)
T ss_dssp TTCCEEEEEEEEEEEE-EETTEEEEE
T ss_pred cCCcEEEEEeeeEEEE-EEcCeEEEE
Confidence 4789999999999887 445555544
No 7
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.50 E-value=29 Score=21.26 Aligned_cols=15 Identities=20% Similarity=0.537 Sum_probs=8.3
Q ss_pred eeecCCCceEEeecC
Q psy15650 184 AVDSGSGGWWFESKS 198 (211)
Q Consensus 184 ile~~~~~~~~~~~~ 198 (211)
||+..+.|||+.+.+
T Consensus 27 vl~~~~~~~W~~~~~ 41 (57)
T d1opka1 27 VLGYNHNGEWCEAQT 41 (57)
T ss_dssp EEEECTTSSEEEEEC
T ss_pred EeEecCCCCEEEEEE
Confidence 344455566666654
No 8
>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli [TaxId: 562]}
Probab=16.93 E-value=20 Score=27.42 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=19.2
Q ss_pred eEEEEeecCCc-----ccccceeee--ecCCCceE
Q psy15650 166 ILVSILSERTA-----VRQAKFHAV--DSGSGGWW 193 (211)
Q Consensus 166 llA~IsSRPGQ-----~GradG~il--e~~~~~~~ 193 (211)
++|++.+.++. .|.|.|.|. ..|++|+.
T Consensus 133 ~~~~~~~~~~~~~~~f~G~~~G~I~~~~~G~~GFG 167 (209)
T d1k7ka_ 133 VLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFG 167 (209)
T ss_dssp EEEEESSTTCSSCEEEEEEEEEEECSSCCCCSSST
T ss_pred EEEEeccCCCCceEEEEEEeccEEeecCCCCCCCC
Confidence 34444455763 399999998 47888863
No 9
>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.55 E-value=28 Score=21.12 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=9.8
Q ss_pred eeeecCCCceEEee
Q psy15650 183 HAVDSGSGGWWFES 196 (211)
Q Consensus 183 ~ile~~~~~~~~~~ 196 (211)
.||+..++|||+-.
T Consensus 26 ~vl~~~~~gWw~g~ 39 (53)
T d1wlpb1 26 EVIHKLLDGWWVIR 39 (53)
T ss_dssp EEEECCTTSSEEEE
T ss_pred EEEeecCCceEEEE
Confidence 45666778999764
No 10
>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.53 E-value=30 Score=22.02 Aligned_cols=13 Identities=0% Similarity=-0.000 Sum_probs=8.8
Q ss_pred eeeecCCCceEEe
Q psy15650 183 HAVDSGSGGWWFE 195 (211)
Q Consensus 183 ~ile~~~~~~~~~ 195 (211)
+||+....|||+-
T Consensus 33 ~vl~~~~~~Ww~v 45 (74)
T d1wfwa_ 33 QVLAVNQQNMCLV 45 (74)
T ss_dssp EEEEECTTSEEEE
T ss_pred EEEEEcCCCCEEE
Confidence 4556667789873
Done!