RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15650
         (211 letters)



>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 126

 Score = 25.9 bits (57), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 120 HGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQ 160
            G+ N + E+    +K  K +VKK K   +  ++E+AI  Q
Sbjct: 14  KGEQNGQEEKW--CEKAVKSLVKKLKKTGQLDELEKAITTQ 52


>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 255

 Score = 25.4 bits (55), Expect = 5.2
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 10/102 (9%)

Query: 82  KLDVQQLTPSLDPEEYTLYVPVVVTRS----TELSVLTRAISHGDLNTEAEE------AV 131
            L +  +         +     V+                I     N++A +      AV
Sbjct: 144 HLKITAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAV 203

Query: 132 LNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSE 173
            +K    K   K        + ++A++E  + G   V++  +
Sbjct: 204 NDKDLDNKTYAKIVELYHSKEAQKALQEDVKDGEKPVNLSKD 245


>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema
           pallidum [TaxId: 160]}
          Length = 240

 Score = 24.7 bits (53), Expect = 8.7
 Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 133 NKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRIL 167
              R + V++         +V   ++E+++ G + 
Sbjct: 208 ADARVQAVLRALCG----GRVRTYLKERYKGGEVA 238


>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 184

 Score = 24.5 bits (52), Expect = 9.2
 Identities = 5/24 (20%), Positives = 10/24 (41%)

Query: 136 RSKKVVKKYKSRQKHAKVEQAIEE 159
                +++Y  R +   +E  IE 
Sbjct: 158 PDGVPLRRYSRRFQTIDIEPDIEA 181


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 753,012
Number of extensions: 32148
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 10
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)