BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15652
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
G+++++D V NH+SD+H+WF S+A PY +YY W++GK
Sbjct: 120 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK 160
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
G+++++D V NH+SD+H+WF S+A PY +YY W++GK
Sbjct: 92 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK 132
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
G+++++D V NH+SD+H+WF S+A PY +YY W++GK
Sbjct: 92 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK 132
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
G+++++D V NH+SD+H+WF S+A PY +YY W++GK
Sbjct: 92 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK 132
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
G+++++D V NH+SD+H+WF S+A PY +YY W++GK
Sbjct: 93 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK 133
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
G+++++D V NH+SD+H+WF S+A PY +YY W++GK
Sbjct: 93 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK 133
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
G+++++D V NH+SD+H+WF S+A PY +YY W++GK
Sbjct: 93 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK 133
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 12 IKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
+++++D V NHTSD+H WF +SK+ PY +YY W++GK
Sbjct: 107 MRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGK 146
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
G+K++LD V NHTSDEH WF +S++ P ++Y+W++GK
Sbjct: 92 GLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGK 132
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKS-KAGIAPYDEYYVWKEGK 50
+K+++D V NHTSDEH+WF +S K+ Y +YY+W+ GK
Sbjct: 92 NMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGK 132
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 12 IKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKE 48
IKI++D V NHTSD+H WF ++K G Y +YY+W++
Sbjct: 94 IKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRD 131
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 12 IKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
+++++D V NHTSD+++WF KSK+ PY YY WK+ K
Sbjct: 93 MRLMIDVVINHTSDQNEWFVKSKSSKDNPYRGYYFWKDAK 132
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAK-SKAGIAPYDEYYVWKE 48
GIKI LDYV NHT H WF + S + +PY YY + E
Sbjct: 120 GIKIYLDYVXNHTGTAHPWFTEASSSSESPYRNYYSFSE 158
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAK-SKAGIAPYDEYYVWKE 48
GIKI LDYV NHT H WF + S + +PY YY + E
Sbjct: 120 GIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSE 158
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYD-EYYVW 46
GIKI++D V NHTSDEH WF +++ + +YY+W
Sbjct: 92 GIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIW 128
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYD-EYYVW 46
GIKI++D V NHTSDEH WF +++ + +YY+W
Sbjct: 92 GIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIW 128
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI + D+V NHT+D+H W ++AG A Y +YY
Sbjct: 169 GISLCADFVLNHTADDHAWAQAARAGDARYLDYY 202
>pdb|3CZE|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Tris Complex
pdb|3CZG|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Glucose Complex
Length = 644
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI + D+V NHT+D+H W ++AG A Y +YY
Sbjct: 169 GISLCADFVLNHTADDHAWAQAARAGDARYLDYY 202
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 38.9 bits (89), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI ++D++ NHTS+EH+W + AG +D +Y
Sbjct: 176 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFY 209
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 38.9 bits (89), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI ++D++ NHTS+EH+W + AG +D +Y
Sbjct: 180 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFY 213
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI ++D++ NHTS+EH+W + AG +D +Y
Sbjct: 176 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFY 209
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI ++D++ NHTS+EH+W + AG +D +Y
Sbjct: 176 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFY 209
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI ++D++ NHTS+EH+W + AG +D +Y
Sbjct: 176 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFY 209
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI ++D++ NHTS+EH+W + AG +D +Y
Sbjct: 176 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFY 209
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI ++D++ NHTS+EH+W + AG +D +Y
Sbjct: 176 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFY 209
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI ++D++ NHTS+EH+W + AG +D +Y
Sbjct: 176 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFY 209
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 10 TGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
+GIK++LD +HT H WF K+ G Y +YYVW
Sbjct: 82 SGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVW 118
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAK-SKAGIAPYDEYYVW 46
GIK+++D NHTS+ H WF K S+ + Y +YYVW
Sbjct: 95 GIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVW 131
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAG-IAPYDEYYVWKEGKG 51
G+K + D V NH S EH+WF +S++ P +++ W+ KG
Sbjct: 101 GMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKG 142
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAG-IAPYDEYYVWKEGKG 51
G+K + D V NH S EH+WF +S++ P +++ W+ KG
Sbjct: 101 GMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKG 142
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 37.0 bits (84), Expect = 0.002, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI ++LD V NH + EH W K++AG Y Y+
Sbjct: 174 GISLVLDLVLNHVAREHAWAQKARAGDPKYRAYF 207
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 12 IKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
I + D+V NHT+D+H W ++AG Y +YY
Sbjct: 171 ISLCADFVLNHTADDHAWAQAARAGDTRYLDYY 203
>pdb|3ZF7|DD Chain d, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 71
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 21 NHTSDEHDWFAKS-KAGIAPYDEYYVWKEGKGVWIPGLLKKSRKFVNKKCSSLVTRLE 77
NHT+ H+ K+ + GI P Y++ +G W+P L+ R N + ++L R E
Sbjct: 6 NHTN--HNQSRKNHRNGIKPPLPLYMYNSKRGGWLPALVNTRRVRKNNQKAALKARRE 61
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 11 GIKILLDYVPNHTS 24
GIKI++D+ PNHTS
Sbjct: 129 GIKIVIDFAPNHTS 142
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 11 GIKILLDYVPNHTS 24
GIKI++D+ PNHTS
Sbjct: 129 GIKIVIDFAPNHTS 142
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 11 GIKILLDYVPNHTS 24
GIKI++D+ PNHTS
Sbjct: 129 GIKIVIDFAPNHTS 142
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 11 GIKILLDYVPNHTS 24
GIKI++D+ PNHTS
Sbjct: 129 GIKIVIDFAPNHTS 142
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 11 GIKILLDYVPNHTS 24
GIKI++D+ PNHTS
Sbjct: 129 GIKIVIDFAPNHTS 142
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 11 GIKILLDYVPNHTS 24
GIK+++D+ PNHTS
Sbjct: 125 GIKVIIDFAPNHTS 138
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 14 ILLDYVPNHTSDEHDWFAK 32
++LD V NHT D H WF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose
Complex
pdb|1UH4|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1MALTO-
Tridecaose Complex
pdb|2D0G|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P5, A Pullulan Model Oligosaccharide
pdb|2D0H|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P2, A Pullulan Model Oligosaccharide
Length = 637
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 14 ILLDYVPNHTSDEHDWFAK 32
++LD V NHT D H WF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 14 ILLDYVPNHTSDEHDWFAK 32
++LD V NHT D H WF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2,
A Pullulan Model Oligosaccharide
Length = 637
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 14 ILLDYVPNHTSDEHDWFAK 32
++LD V NHT D H WF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 14 ILLDYVPNHTSDEHDWFAK 32
++LD V NHT D H WF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 8/14 (57%), Positives = 14/14 (100%)
Query: 11 GIKILLDYVPNHTS 24
GIK+++D+VPNH++
Sbjct: 121 GIKVIVDFVPNHST 134
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDE 42
M +E+DAV +K LL Y+P++ E F + +A +A DE
Sbjct: 240 MAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPE-EADLAVTDE 280
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDE 42
M +E+DAV +K LL Y+P++ E F + +A +A DE
Sbjct: 240 MAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPE-EADLAVTDE 280
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDE 42
M +E+DAV +K LL Y+P++ E F + +A +A DE
Sbjct: 240 MAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPE-EADLAVTDE 280
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDE 42
M +E+DAV +K LL Y+P++ E F + +A +A DE
Sbjct: 240 MAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPE-EADLAVTDE 280
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDE 42
M +E+DAV +K LL Y+P++ E F + +A +A DE
Sbjct: 240 MAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPE-EADLAVTDE 280
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDE 42
M +E+DAV +K LL Y+P++ E F + +A +A DE
Sbjct: 240 MAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPE-EADLAVTDE 280
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 131 IKVIIDFAPNHTS 143
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 12 IKILLDYVPNHTS 24
IK+++D+ PNHTS
Sbjct: 131 IKVIIDFAPNHTS 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,089,613
Number of Sequences: 62578
Number of extensions: 115951
Number of successful extensions: 332
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 85
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)