Query psy15652
Match_columns 92
No_of_seqs 125 out of 1151
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:09:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10933 trehalose-6-phosphate 99.8 1.9E-20 4.2E-25 150.2 8.2 87 2-91 85-171 (551)
2 TIGR02403 trehalose_treC alpha 99.8 3E-20 6.5E-25 148.6 8.4 86 2-91 79-164 (543)
3 COG0366 AmyA Glycosidases [Car 99.7 1.9E-17 4.1E-22 127.5 8.3 88 1-91 80-169 (505)
4 PRK13840 sucrose phosphorylase 99.7 1.2E-17 2.6E-22 133.2 7.3 84 5-91 72-164 (495)
5 TIGR02456 treS_nterm trehalose 99.7 3.4E-17 7.4E-22 130.8 8.6 85 2-91 80-168 (539)
6 TIGR02455 TreS_stutzeri trehal 99.7 2.7E-17 5.8E-22 134.4 6.5 89 2-91 134-262 (688)
7 TIGR03852 sucrose_gtfA sucrose 99.7 4.7E-17 1E-21 129.2 3.9 78 12-91 73-160 (470)
8 KOG0471|consensus 99.6 1.2E-16 2.7E-21 128.4 5.3 89 2-91 92-183 (545)
9 PF00128 Alpha-amylase: Alpha 99.6 2.3E-15 4.9E-20 108.2 4.8 48 2-49 56-104 (316)
10 PRK10785 maltodextrin glucosid 99.4 1.2E-13 2.7E-18 111.8 5.8 48 2-49 230-285 (598)
11 TIGR02401 trehalose_TreY malto 99.3 7.1E-12 1.5E-16 105.0 5.3 46 2-47 69-119 (825)
12 PRK14511 maltooligosyl trehalo 99.2 2.5E-11 5.5E-16 102.3 5.5 45 2-46 73-122 (879)
13 PRK14507 putative bifunctional 99.2 2.3E-11 5E-16 107.5 5.3 46 2-47 811-861 (1693)
14 COG3280 TreY Maltooligosyl tre 99.0 6.4E-10 1.4E-14 92.6 4.6 47 2-48 72-123 (889)
15 PRK09505 malS alpha-amylase; R 98.9 4.1E-09 8.9E-14 87.2 6.1 47 2-48 296-353 (683)
16 PRK09441 cytoplasmic alpha-amy 98.8 2.8E-09 6E-14 84.3 2.7 31 2-32 85-117 (479)
17 smart00642 Aamy Alpha-amylase 98.7 2.1E-08 4.5E-13 70.0 3.3 24 2-25 74-97 (166)
18 TIGR02103 pullul_strch alpha-1 98.5 5.2E-08 1.1E-12 82.8 3.6 45 1-47 407-451 (898)
19 PLN02877 alpha-amylase/limit d 98.5 9.9E-08 2.1E-12 81.5 5.1 46 2-49 470-516 (970)
20 PLN00196 alpha-amylase; Provis 98.5 5.2E-08 1.1E-12 76.9 2.9 28 1-28 95-122 (428)
21 TIGR02104 pulA_typeI pullulana 98.5 1.6E-07 3.5E-12 76.4 4.7 31 2-32 233-264 (605)
22 PRK12313 glycogen branching en 98.5 1E-07 2.3E-12 77.8 3.4 27 2-28 224-250 (633)
23 TIGR02402 trehalose_TreZ malto 98.5 1.2E-07 2.5E-12 76.6 3.3 29 2-30 164-192 (542)
24 TIGR01515 branching_enzym alph 98.5 1.4E-07 2.9E-12 77.1 3.5 30 2-31 210-239 (613)
25 PRK03705 glycogen debranching 98.4 3E-07 6.5E-12 76.0 5.4 29 2-30 246-277 (658)
26 TIGR02100 glgX_debranch glycog 98.4 2.2E-07 4.7E-12 77.1 4.4 28 2-29 249-276 (688)
27 PRK05402 glycogen branching en 98.4 1.7E-07 3.7E-12 77.8 3.2 30 1-30 318-347 (726)
28 PRK14510 putative bifunctional 98.3 6E-07 1.3E-11 78.3 4.4 29 2-30 251-279 (1221)
29 TIGR02102 pullulan_Gpos pullul 98.3 3.9E-07 8.5E-12 78.9 2.7 40 2-48 559-598 (1111)
30 TIGR01531 glyc_debranch glycog 98.3 7.1E-07 1.5E-11 78.6 3.6 31 2-32 188-219 (1464)
31 PLN02361 alpha-amylase 98.2 1.2E-06 2.6E-11 68.9 3.1 24 2-25 80-103 (401)
32 PRK14706 glycogen branching en 98.2 1.2E-06 2.5E-11 72.3 3.1 29 2-30 221-249 (639)
33 PLN02960 alpha-amylase 98.1 1.5E-06 3.3E-11 73.8 3.3 28 2-29 470-497 (897)
34 COG1523 PulA Type II secretory 98.1 4E-06 8.8E-11 69.9 4.9 48 2-50 269-316 (697)
35 PLN02447 1,4-alpha-glucan-bran 98.1 2.3E-06 5E-11 71.8 3.2 27 2-28 304-330 (758)
36 PRK12568 glycogen branching en 98.1 2.5E-06 5.4E-11 71.4 3.3 25 2-26 323-347 (730)
37 PLN02784 alpha-amylase 98.1 5E-06 1.1E-10 70.7 5.1 44 2-48 572-615 (894)
38 PRK14705 glycogen branching en 98.1 3.1E-06 6.7E-11 74.0 3.6 31 1-32 818-848 (1224)
39 PLN03244 alpha-amylase; Provis 98.0 4.4E-06 9.5E-11 70.6 2.9 28 1-28 444-471 (872)
40 COG0296 GlgB 1,4-alpha-glucan 97.8 1.7E-05 3.6E-10 65.6 3.3 30 1-30 217-246 (628)
41 PF14701 hDGE_amylase: glucano 97.1 0.00054 1.2E-08 54.5 3.6 31 2-32 80-111 (423)
42 KOG0470|consensus 96.6 0.00091 2E-08 56.2 1.6 24 2-25 315-338 (757)
43 PF14871 GHL6: Hypothetical gl 95.0 0.016 3.5E-07 39.2 1.9 20 2-21 48-67 (132)
44 KOG2212|consensus 91.3 0.097 2.1E-06 41.7 1.2 24 2-25 99-122 (504)
45 PF00150 Cellulase: Cellulase 89.9 0.31 6.8E-06 34.7 2.7 20 2-21 66-85 (281)
46 cd06591 GH31_xylosidase_XylS X 89.7 0.64 1.4E-05 35.2 4.4 33 2-35 70-102 (319)
47 cd06593 GH31_xylosidase_YicI Y 89.1 0.72 1.6E-05 34.4 4.3 33 2-35 70-102 (308)
48 cd06594 GH31_glucosidase_YihQ 88.1 0.32 7E-06 36.9 1.8 33 2-35 75-108 (317)
49 PF02324 Glyco_hydro_70: Glyco 87.5 0.5 1.1E-05 40.3 2.7 21 3-23 652-672 (809)
50 cd06599 GH31_glycosidase_Aec37 87.5 0.89 1.9E-05 34.4 3.9 33 2-35 77-109 (317)
51 cd06592 GH31_glucosidase_KIAA1 85.5 1.4 3E-05 33.1 4.0 33 2-35 74-106 (303)
52 PF07745 Glyco_hydro_53: Glyco 84.7 0.9 1.9E-05 35.2 2.7 21 2-22 62-82 (332)
53 KOG3625|consensus 84.5 0.7 1.5E-05 41.0 2.2 31 2-32 200-231 (1521)
54 PRK10658 putative alpha-glucos 82.2 1.9 4.2E-05 36.2 3.9 33 2-35 329-361 (665)
55 PF05913 DUF871: Bacterial pro 78.9 2.1 4.6E-05 33.4 2.9 21 2-22 51-71 (357)
56 cd06598 GH31_transferase_CtsZ 77.7 3.6 7.8E-05 31.1 3.8 33 2-35 74-106 (317)
57 COG3589 Uncharacterized conser 72.0 3.4 7.3E-05 32.6 2.4 22 2-23 53-74 (360)
58 cd06603 GH31_GANC_GANAB_alpha 68.4 8.4 0.00018 29.3 3.9 34 2-35 68-102 (339)
59 COG3867 Arabinogalactan endo-1 67.9 4.6 0.0001 31.8 2.4 19 2-20 108-126 (403)
60 cd06602 GH31_MGAM_SI_GAA This 67.6 9.5 0.00021 29.2 4.0 34 2-35 70-107 (339)
61 PF13200 DUF4015: Putative gly 66.6 6.4 0.00014 30.4 2.9 19 2-20 65-83 (316)
62 PF01055 Glyco_hydro_31: Glyco 66.3 8.4 0.00018 30.0 3.6 33 2-35 87-122 (441)
63 cd06595 GH31_xylosidase_XylS-l 66.3 6.5 0.00014 29.4 2.8 21 2-22 78-98 (292)
64 PF02638 DUF187: Glycosyl hydr 65.6 4.5 9.7E-05 30.7 1.9 18 2-19 74-91 (311)
65 cd06589 GH31 The enzymes of gl 62.2 8.1 0.00018 28.3 2.7 29 2-34 70-98 (265)
66 COG1501 Alpha-glucosidases, fa 60.3 8.8 0.00019 33.0 2.9 33 2-35 325-357 (772)
67 PLN02681 proline dehydrogenase 58.9 9.7 0.00021 30.7 2.8 26 2-34 224-249 (455)
68 cd06597 GH31_transferase_CtsY 58.6 11 0.00023 29.0 2.9 19 2-20 89-107 (340)
69 PF04343 DUF488: Protein of un 58.2 14 0.0003 23.9 3.0 30 2-32 4-33 (122)
70 PF14488 DUF4434: Domain of un 56.6 12 0.00027 25.9 2.7 21 2-22 69-89 (166)
71 cd06600 GH31_MGAM-like This fa 56.4 12 0.00026 28.3 2.8 33 2-34 68-101 (317)
72 cd06601 GH31_lyase_GLase GLase 55.0 13 0.00028 28.6 2.8 19 2-20 68-86 (332)
73 cd06604 GH31_glucosidase_II_Ma 54.8 23 0.0005 26.9 4.2 34 2-35 68-102 (339)
74 cd01494 AAT_I Aspartate aminot 53.0 14 0.00031 23.4 2.4 24 2-25 113-136 (170)
75 PLN02635 disproportionating en 52.0 15 0.00032 30.4 2.8 24 2-25 228-253 (538)
76 COG2730 BglC Endoglucanase [Ca 51.7 13 0.00029 29.1 2.4 17 2-18 120-136 (407)
77 PF01120 Alpha_L_fucos: Alpha- 51.7 13 0.00028 28.5 2.3 19 2-20 142-160 (346)
78 PF14872 GHL5: Hypothetical gl 51.6 13 0.00028 32.0 2.5 25 2-26 312-339 (811)
79 PRK14508 4-alpha-glucanotransf 50.3 16 0.00034 29.8 2.7 20 2-21 202-221 (497)
80 PF01791 DeoC: DeoC/LacD famil 47.3 13 0.00028 26.6 1.7 23 2-24 116-138 (236)
81 cd06542 GH18_EndoS-like Endo-b 46.2 29 0.00062 24.9 3.3 24 2-25 55-78 (255)
82 PRK10426 alpha-glucosidase; Pr 45.7 38 0.00082 28.4 4.3 33 2-35 273-305 (635)
83 cd02875 GH18_chitobiase Chitob 44.3 22 0.00047 27.5 2.6 18 2-19 68-85 (358)
84 PF02449 Glyco_hydro_42: Beta- 44.2 20 0.00044 27.4 2.4 18 2-19 51-68 (374)
85 PRK00125 pyrF orotidine 5'-pho 43.7 22 0.00049 26.8 2.5 24 2-25 77-100 (278)
86 PF01212 Beta_elim_lyase: Beta 43.6 22 0.00047 26.8 2.4 18 2-19 149-166 (290)
87 TIGR03356 BGL beta-galactosida 43.5 22 0.00048 28.2 2.5 18 2-19 98-115 (427)
88 TIGR02127 pyrF_sub2 orotidine 42.1 26 0.00057 26.1 2.6 24 2-25 77-100 (261)
89 TIGR03128 RuMP_HxlA 3-hexulose 42.0 28 0.00061 24.1 2.6 17 2-18 93-109 (206)
90 PF00728 Glyco_hydro_20: Glyco 41.7 27 0.0006 26.0 2.7 24 2-25 77-101 (351)
91 cd08571 GDPD_SHV3_plant Glycer 40.1 26 0.00056 26.4 2.3 15 2-16 242-256 (302)
92 PF02446 Glyco_hydro_77: 4-alp 39.0 32 0.00068 27.9 2.8 21 2-22 196-216 (496)
93 COG1649 Uncharacterized protei 38.8 22 0.00047 28.7 1.8 14 2-15 119-132 (418)
94 smart00812 Alpha_L_fucos Alpha 38.7 27 0.00058 27.5 2.3 17 2-18 132-148 (384)
95 cd08582 GDPD_like_2 Glyceropho 38.3 30 0.00065 24.5 2.4 15 2-16 192-206 (233)
96 cd08560 GDPD_EcGlpQ_like_1 Gly 37.8 29 0.00063 27.1 2.4 15 2-16 282-296 (356)
97 PF13199 Glyco_hydro_66: Glyco 37.7 27 0.0006 29.0 2.3 43 2-51 174-216 (559)
98 COG4702 Uncharacterized conser 37.6 13 0.00029 26.3 0.4 20 3-22 38-57 (168)
99 cd00861 ProRS_anticodon_short 37.1 32 0.0007 20.4 2.1 20 2-21 22-41 (94)
100 COG0041 PurE Phosphoribosylcar 36.8 33 0.00072 24.3 2.3 17 2-18 48-64 (162)
101 cd05014 SIS_Kpsf KpsF-like pro 36.4 36 0.00078 21.4 2.3 15 2-16 65-79 (128)
102 cd02877 GH18_hevamine_XipI_cla 36.3 32 0.00069 25.9 2.3 17 2-18 63-79 (280)
103 COG1105 FruK Fructose-1-phosph 36.1 34 0.00073 26.5 2.5 17 2-18 150-166 (310)
104 cd08555 PI-PLCc_GDPD_SF Cataly 35.9 36 0.00077 23.2 2.4 16 2-17 140-155 (179)
105 cd05013 SIS_RpiR RpiR-like pro 35.6 38 0.00082 21.0 2.3 15 2-16 78-92 (139)
106 cd08567 GDPD_SpGDE_like Glycer 35.6 35 0.00075 24.3 2.4 17 2-18 222-238 (263)
107 cd04726 KGPDC_HPS 3-Keto-L-gul 35.4 42 0.00092 22.9 2.7 23 2-24 94-116 (202)
108 smart00481 POLIIIAc DNA polyme 35.1 32 0.0007 19.5 1.8 21 2-24 19-39 (67)
109 cd00958 DhnA Class I fructose- 34.9 37 0.0008 24.1 2.4 19 2-20 113-131 (235)
110 PF01301 Glyco_hydro_35: Glyco 34.8 34 0.00074 26.0 2.3 22 2-23 67-88 (319)
111 cd00609 AAT_like Aspartate ami 34.7 36 0.00078 24.4 2.3 21 2-22 156-176 (350)
112 cd06454 KBL_like KBL_like; thi 34.6 39 0.00085 24.6 2.5 19 2-20 153-171 (349)
113 cd00615 Orn_deC_like Ornithine 34.2 39 0.00085 24.7 2.5 18 2-19 174-191 (294)
114 cd08562 GDPD_EcUgpQ_like Glyce 34.1 38 0.00083 23.6 2.4 15 2-16 190-204 (229)
115 PLN02950 4-alpha-glucanotransf 34.1 40 0.00086 29.7 2.8 20 2-21 465-484 (909)
116 cd01173 pyridoxal_pyridoxamine 33.8 40 0.00088 23.9 2.5 21 2-22 92-114 (254)
117 PRK09454 ugpQ cytoplasmic glyc 32.8 41 0.00089 24.2 2.4 16 2-17 200-215 (249)
118 PLN03236 4-alpha-glucanotransf 32.8 43 0.00093 28.9 2.8 22 2-23 278-299 (745)
119 TIGR01814 kynureninase kynuren 32.7 43 0.00093 25.6 2.6 19 2-20 192-210 (406)
120 PTZ00292 ribokinase; Provision 32.6 68 0.0015 23.5 3.6 19 2-20 164-182 (326)
121 PF01964 ThiC: ThiC family; I 32.5 69 0.0015 26.0 3.7 54 2-56 246-300 (420)
122 PLN02379 pfkB-type carbohydrat 32.3 36 0.00078 26.2 2.1 18 2-19 195-212 (367)
123 cd08559 GDPD_periplasmic_GlpQ_ 31.9 42 0.0009 25.0 2.3 15 2-16 247-261 (296)
124 cd08580 GDPD_Rv2277c_like Glyc 31.8 42 0.0009 24.9 2.3 21 2-23 220-241 (263)
125 PRK13352 thiamine biosynthesis 31.8 71 0.0015 26.0 3.7 54 2-56 250-304 (431)
126 cd08579 GDPD_memb_like Glycero 31.1 47 0.001 23.3 2.4 17 2-18 181-197 (220)
127 COG0313 Predicted methyltransf 30.8 37 0.00081 25.9 1.9 14 2-15 97-110 (275)
128 cd00287 ribokinase_pfkB_like r 30.8 53 0.0012 21.7 2.5 22 2-23 75-96 (196)
129 PF00215 OMPdecase: Orotidine 30.7 57 0.0012 23.2 2.8 24 2-25 46-69 (226)
130 PF01619 Pro_dh: Proline dehyd 30.7 38 0.00082 25.5 1.9 17 2-18 96-112 (313)
131 cd08568 GDPD_TmGDE_like Glycer 30.7 47 0.001 23.4 2.4 16 2-17 185-200 (226)
132 cd06167 LabA_like LabA_like pr 30.6 59 0.0013 21.0 2.7 24 2-25 114-137 (149)
133 PF03537 Glyco_hydro_114: Glyc 30.6 48 0.001 19.9 2.1 15 2-16 40-54 (74)
134 PF04413 Glycos_transf_N: 3-De 30.5 33 0.00073 24.0 1.5 15 2-16 109-123 (186)
135 PRK09852 cryptic 6-phospho-bet 30.5 43 0.00093 27.1 2.3 20 2-23 116-135 (474)
136 PF00202 Aminotran_3: Aminotra 30.4 64 0.0014 24.4 3.1 47 2-50 202-248 (339)
137 TIGR01437 selA_rel uncharacter 30.4 47 0.001 25.3 2.5 20 2-21 170-189 (363)
138 PF03129 HGTP_anticodon: Antic 30.4 63 0.0014 19.2 2.6 23 2-24 20-42 (94)
139 PF00563 EAL: EAL domain; Int 30.2 53 0.0012 22.4 2.5 21 2-22 194-214 (236)
140 cd01940 Fructoselysine_kinase_ 29.9 47 0.001 23.4 2.3 19 2-20 129-147 (264)
141 cd06545 GH18_3CO4_chitinase Th 29.8 47 0.001 23.9 2.3 18 2-19 50-67 (253)
142 PLN02651 cysteine desulfurase 29.8 53 0.0011 24.6 2.6 19 2-20 159-177 (364)
143 cd02742 GH20_hexosaminidase Be 29.7 43 0.00093 25.1 2.1 25 1-25 75-100 (303)
144 cd00860 ThrRS_anticodon ThrRS 29.6 52 0.0011 19.2 2.1 18 2-19 19-36 (91)
145 PF03009 GDPD: Glycerophosphor 29.4 51 0.0011 22.6 2.3 17 2-18 213-229 (256)
146 KOG4701|consensus 29.4 43 0.00093 27.4 2.1 16 3-18 95-110 (568)
147 PF07931 CPT: Chloramphenicol 29.2 84 0.0018 22.0 3.4 40 3-46 75-115 (174)
148 cd08574 GDPD_GDE_2_3_6 Glycero 29.1 51 0.0011 23.9 2.4 20 2-22 214-233 (252)
149 PF00266 Aminotran_5: Aminotra 29.1 57 0.0012 24.4 2.7 43 2-51 160-202 (371)
150 KOG2499|consensus 29.0 51 0.0011 27.4 2.5 24 2-25 254-278 (542)
151 TIGR00217 malQ 4-alpha-glucano 29.0 47 0.001 27.2 2.3 21 2-22 216-236 (513)
152 cd00227 CPT Chloramphenicol (C 28.9 60 0.0013 21.8 2.6 20 2-21 76-95 (175)
153 smart00052 EAL Putative diguan 28.9 59 0.0013 22.2 2.6 21 2-22 194-214 (241)
154 COG1432 Uncharacterized conser 28.7 48 0.001 23.2 2.1 37 2-48 125-161 (181)
155 cd00614 CGS_like CGS_like: Cys 28.7 55 0.0012 24.9 2.5 19 2-20 146-164 (369)
156 cd08607 GDPD_GDE5 Glycerophosp 28.2 53 0.0011 24.0 2.3 21 2-22 249-269 (290)
157 PRK00278 trpC indole-3-glycero 28.2 62 0.0013 23.9 2.7 17 2-18 151-167 (260)
158 cd08564 GDPD_GsGDE_like Glycer 28.2 54 0.0012 23.8 2.4 16 2-17 214-229 (265)
159 cd08575 GDPD_GDE4_like Glycero 28.1 48 0.001 24.2 2.1 21 2-23 222-242 (264)
160 cd08573 GDPD_GDE1 Glycerophosp 27.9 55 0.0012 23.9 2.4 15 2-16 219-233 (258)
161 cd08605 GDPD_GDE5_like_1_plant 27.8 54 0.0012 24.0 2.3 15 2-16 241-255 (282)
162 PRK07050 cystathionine beta-ly 27.6 72 0.0016 24.7 3.1 21 2-22 171-191 (394)
163 cd02871 GH18_chitinase_D-like 27.4 66 0.0014 24.2 2.7 16 3-18 65-80 (312)
164 cd05017 SIS_PGI_PMI_1 The memb 27.1 65 0.0014 20.4 2.4 15 2-16 61-75 (119)
165 PF08357 SEFIR: SEFIR domain; 26.9 37 0.00081 22.2 1.2 34 2-35 20-57 (150)
166 PRK09028 cystathionine beta-ly 26.7 62 0.0013 25.4 2.6 20 2-21 167-186 (394)
167 cd06564 GH20_DspB_LnbB-like Gl 26.6 41 0.00089 25.4 1.5 23 2-24 86-109 (326)
168 PRK01278 argD acetylornithine 26.4 73 0.0016 24.1 2.9 24 2-25 200-223 (389)
169 TIGR03127 RuMP_HxlB 6-phospho 26.3 64 0.0014 21.8 2.3 15 2-16 90-104 (179)
170 TIGR00474 selA seryl-tRNA(sec) 26.2 62 0.0014 26.0 2.5 18 2-19 236-253 (454)
171 TIGR01140 L_thr_O3P_dcar L-thr 26.0 62 0.0013 24.0 2.4 21 2-22 149-169 (330)
172 PRK05967 cystathionine beta-ly 26.0 74 0.0016 25.0 2.9 20 2-21 170-189 (395)
173 cd08570 GDPD_YPL206cp_fungi Gl 26.0 64 0.0014 22.9 2.4 15 2-16 195-209 (234)
174 TIGR01231 lacC tagatose-6-phos 25.9 66 0.0014 23.5 2.5 19 2-20 147-165 (309)
175 COG0520 csdA Selenocysteine ly 25.8 64 0.0014 25.4 2.5 40 2-50 183-224 (405)
176 cd08600 GDPD_EcGlpQ_like Glyce 25.8 62 0.0013 24.6 2.4 17 2-18 267-283 (318)
177 cd05008 SIS_GlmS_GlmD_1 SIS (S 25.7 70 0.0015 20.0 2.3 15 2-16 64-78 (126)
178 PRK07269 cystathionine gamma-s 25.6 66 0.0014 24.7 2.5 19 2-20 157-175 (364)
179 TIGR03402 FeS_nifS cysteine de 25.6 68 0.0015 24.0 2.5 19 2-20 157-175 (379)
180 TIGR03235 DNA_S_dndA cysteine 25.5 70 0.0015 23.7 2.6 18 2-19 159-176 (353)
181 cd08604 GDPD_SHV3_repeat_2 Gly 25.5 64 0.0014 24.2 2.4 15 2-16 241-255 (300)
182 PRK11440 putative hydrolase; P 25.4 61 0.0013 22.2 2.1 15 2-16 39-53 (188)
183 cd08577 PI-PLCc_GDPD_SF_unchar 25.4 66 0.0014 23.4 2.4 20 2-21 189-208 (228)
184 cd02874 GH18_CFLE_spore_hydrol 25.3 64 0.0014 23.9 2.3 18 2-19 49-66 (313)
185 cd01012 YcaC_related YcaC rela 25.3 57 0.0012 21.7 1.9 15 2-16 27-41 (157)
186 PRK11142 ribokinase; Provision 25.1 72 0.0016 23.0 2.5 18 2-19 149-166 (306)
187 COG5483 Uncharacterized conser 25.0 85 0.0019 23.9 2.9 30 2-32 15-44 (289)
188 cd06568 GH20_SpHex_like A subg 25.0 67 0.0015 24.6 2.4 23 2-24 79-102 (329)
189 PRK05939 hypothetical protein; 24.9 72 0.0016 24.8 2.6 19 2-20 152-170 (397)
190 cd08583 PI-PLCc_GDPD_SF_unchar 24.9 69 0.0015 22.7 2.4 16 2-17 196-211 (237)
191 PLN02721 threonine aldolase 24.8 74 0.0016 23.2 2.6 19 2-20 162-180 (353)
192 PF01276 OKR_DC_1: Orn/Lys/Arg 24.7 44 0.00095 26.8 1.4 18 2-19 188-205 (417)
193 cd08556 GDPD Glycerophosphodie 24.7 81 0.0017 20.9 2.6 18 2-19 151-168 (189)
194 PRK09936 hypothetical protein; 24.6 66 0.0014 24.9 2.3 20 2-21 76-95 (296)
195 cd06563 GH20_chitobiase-like T 24.6 59 0.0013 25.0 2.1 23 2-24 90-113 (357)
196 PRK15014 6-phospho-beta-glucos 24.5 75 0.0016 25.7 2.7 17 2-18 114-130 (477)
197 TIGR02326 transamin_PhnW 2-ami 24.5 75 0.0016 23.6 2.6 19 2-20 150-168 (363)
198 PF15640 Tox-MPTase4: Metallop 24.5 71 0.0015 21.9 2.2 15 3-17 27-41 (132)
199 cd06547 GH85_ENGase Endo-beta- 24.3 1.2E+02 0.0025 23.5 3.6 33 2-35 50-82 (339)
200 PF03767 Acid_phosphat_B: HAD 24.3 46 0.001 24.1 1.4 16 1-16 121-136 (229)
201 cd01174 ribokinase Ribokinase 24.2 64 0.0014 23.0 2.1 19 2-20 146-164 (292)
202 cd08563 GDPD_TtGDE_like Glycer 24.2 72 0.0016 22.4 2.3 15 2-16 191-205 (230)
203 PF01380 SIS: SIS domain SIS d 24.0 83 0.0018 19.5 2.4 13 2-14 71-83 (131)
204 cd06502 TA_like Low-specificit 24.0 64 0.0014 23.4 2.1 18 2-19 150-167 (338)
205 PRK05628 coproporphyrinogen II 23.8 95 0.002 23.8 3.1 33 2-34 148-181 (375)
206 PRK07568 aspartate aminotransf 23.7 76 0.0016 23.9 2.5 22 2-23 186-207 (397)
207 cd08606 GDPD_YPL110cp_fungi Gl 23.6 72 0.0016 23.3 2.3 19 2-20 236-254 (286)
208 TIGR02867 spore_II_P stage II 23.5 80 0.0017 22.7 2.5 19 2-20 38-56 (196)
209 PRK08134 O-acetylhomoserine am 23.3 79 0.0017 25.0 2.6 19 2-20 170-188 (433)
210 PRK10294 6-phosphofructokinase 23.2 80 0.0017 23.0 2.5 18 2-19 151-168 (309)
211 PRK11052 malQ 4-alpha-glucanot 23.1 77 0.0017 27.1 2.6 19 2-20 359-379 (695)
212 PLN02323 probable fructokinase 23.1 61 0.0013 23.9 1.8 18 2-19 158-175 (330)
213 COG0279 GmhA Phosphoheptose is 23.0 65 0.0014 23.1 1.9 15 2-16 127-141 (176)
214 PRK05968 hypothetical protein; 23.0 80 0.0017 24.4 2.5 19 2-20 168-186 (389)
215 cd08601 GDPD_SaGlpQ_like Glyce 23.0 77 0.0017 22.7 2.3 16 2-17 209-224 (256)
216 COG1606 ATP-utilizing enzymes 22.8 68 0.0015 24.5 2.0 18 2-19 104-121 (269)
217 PF00857 Isochorismatase: Isoc 22.8 69 0.0015 21.1 1.9 19 2-20 31-49 (174)
218 COG0160 GabT 4-aminobutyrate a 22.8 1E+02 0.0022 25.1 3.1 29 2-30 247-275 (447)
219 TIGR01329 cysta_beta_ly_E cyst 22.7 82 0.0018 24.2 2.5 19 2-20 152-170 (378)
220 smart00839 ELFV_dehydrog Gluta 22.6 57 0.0012 20.7 1.4 22 4-25 41-62 (102)
221 TIGR00858 bioF 8-amino-7-oxono 22.6 85 0.0018 22.8 2.5 19 2-20 167-185 (360)
222 COG0269 SgbH 3-hexulose-6-phos 22.6 1.1E+02 0.0024 22.6 3.0 22 2-23 97-118 (217)
223 TIGR01675 plant-AP plant acid 22.5 67 0.0014 23.7 1.9 15 2-16 127-141 (229)
224 PRK14012 cysteine desulfurase; 22.5 85 0.0018 23.9 2.6 19 2-20 165-183 (404)
225 cd08602 GDPD_ScGlpQ1_like Glyc 22.5 78 0.0017 23.9 2.4 16 2-17 257-272 (309)
226 cd06562 GH20_HexA_HexB-like Be 22.4 70 0.0015 24.5 2.1 24 2-25 74-98 (348)
227 cd00859 HisRS_anticodon HisRS 22.3 84 0.0018 17.8 2.1 19 2-20 19-37 (91)
228 cd04725 OMP_decarboxylase_like 22.3 86 0.0019 22.3 2.4 24 2-25 40-63 (216)
229 PRK13508 tagatose-6-phosphate 22.3 86 0.0019 22.9 2.5 18 2-19 147-164 (309)
230 PRK14335 (dimethylallyl)adenos 22.2 1.7E+02 0.0036 23.3 4.3 34 2-35 297-332 (455)
231 PRK07582 cystathionine gamma-l 22.2 85 0.0018 24.0 2.5 19 2-20 153-171 (366)
232 PRK08574 cystathionine gamma-s 22.1 85 0.0018 24.2 2.5 19 2-20 158-176 (385)
233 TIGR02006 IscS cysteine desulf 22.1 88 0.0019 23.8 2.6 19 2-20 163-181 (402)
234 PRK11143 glpQ glycerophosphodi 22.1 79 0.0017 24.5 2.3 17 2-18 294-310 (355)
235 cd01302 Cyclic_amidohydrolases 22.1 65 0.0014 24.3 1.9 23 2-24 161-183 (337)
236 TIGR00190 thiC thiamine biosyn 22.1 1.4E+02 0.003 24.3 3.7 51 2-56 247-301 (423)
237 PRK13305 sgbH 3-keto-L-gulonat 22.1 91 0.002 22.6 2.5 23 2-24 45-69 (218)
238 PRK05764 aspartate aminotransf 22.0 84 0.0018 23.6 2.4 21 2-22 188-208 (393)
239 cd05710 SIS_1 A subgroup of th 21.9 92 0.002 19.8 2.3 15 2-16 65-79 (120)
240 cd08610 GDPD_GDE6 Glycerophosp 21.9 82 0.0018 24.1 2.4 20 2-22 236-255 (316)
241 TIGR01822 2am3keto_CoA 2-amino 21.9 89 0.0019 23.4 2.6 19 2-20 191-209 (393)
242 TIGR02152 D_ribokin_bact ribok 21.9 79 0.0017 22.6 2.2 19 2-20 141-159 (293)
243 TIGR03392 FeS_syn_CsdA cystein 21.9 84 0.0018 23.7 2.4 19 2-20 178-196 (398)
244 cd08572 GDPD_GDE5_like Glycero 21.8 95 0.0021 23.1 2.7 20 2-21 252-271 (293)
245 PRK08960 hypothetical protein; 21.7 98 0.0021 23.4 2.8 22 2-23 189-210 (387)
246 PRK05958 8-amino-7-oxononanoat 21.7 88 0.0019 23.1 2.5 19 2-20 189-207 (385)
247 cd05005 SIS_PHI Hexulose-6-pho 21.6 89 0.0019 21.1 2.3 15 2-16 93-107 (179)
248 cd00616 AHBA_syn 3-amino-5-hyd 21.6 91 0.002 22.7 2.5 20 2-21 124-143 (352)
249 PRK06702 O-acetylhomoserine am 21.5 90 0.002 24.9 2.6 28 2-34 168-195 (432)
250 PRK00854 rocD ornithine--oxo-a 21.5 1.2E+02 0.0026 23.0 3.2 29 2-30 212-240 (401)
251 PRK10874 cysteine sulfinate de 21.5 91 0.002 23.6 2.6 19 2-20 181-199 (401)
252 PF00289 CPSase_L_chain: Carba 21.5 99 0.0022 19.9 2.4 15 2-16 16-30 (110)
253 cd08612 GDPD_GDE4 Glycerophosp 21.4 85 0.0018 23.4 2.3 15 2-16 252-266 (300)
254 PRK04073 rocD ornithine--oxo-a 21.4 1.2E+02 0.0026 23.1 3.3 29 2-30 211-239 (396)
255 KOG1065|consensus 21.4 76 0.0017 27.8 2.3 20 2-21 355-374 (805)
256 COG4185 Uncharacterized protei 21.3 81 0.0017 22.8 2.1 19 1-19 84-102 (187)
257 TIGR01324 cysta_beta_ly_B cyst 21.1 95 0.0021 24.0 2.6 21 2-22 156-176 (377)
258 PRK07812 O-acetylhomoserine am 21.0 91 0.002 24.8 2.5 19 2-20 176-194 (436)
259 TIGR01976 am_tr_V_VC1184 cyste 21.0 89 0.0019 23.4 2.4 18 2-19 177-194 (397)
260 TIGR01244 conserved hypothetic 21.0 1.2E+02 0.0026 19.9 2.8 26 4-29 20-45 (135)
261 PF03644 Glyco_hydro_85: Glyco 20.9 68 0.0015 24.5 1.7 32 3-35 47-78 (311)
262 cd01945 ribokinase_group_B Rib 20.9 67 0.0014 22.8 1.6 19 2-20 142-160 (284)
263 TIGR03833 conserved hypothetic 20.9 47 0.001 19.9 0.7 10 7-16 41-50 (62)
264 PRK09513 fruK 1-phosphofructok 20.9 78 0.0017 23.1 2.0 18 2-19 152-169 (312)
265 cd08603 GDPD_SHV3_repeat_1 Gly 20.9 71 0.0015 24.5 1.8 14 2-15 239-252 (299)
266 cd01167 bac_FRK Fructokinases 20.9 90 0.0019 22.2 2.3 20 2-21 142-161 (295)
267 PRK09813 fructoselysine 6-kina 20.8 97 0.0021 21.9 2.5 19 2-20 127-145 (260)
268 TIGR01656 Histidinol-ppas hist 20.8 98 0.0021 20.2 2.3 15 2-16 34-48 (147)
269 cd00858 GlyRS_anticodon GlyRS 20.8 86 0.0019 20.0 2.0 18 2-19 46-63 (121)
270 PRK04311 selenocysteine syntha 20.8 91 0.002 25.1 2.5 17 2-18 241-257 (464)
271 PRK07324 transaminase; Validat 20.7 1E+02 0.0022 23.4 2.6 22 2-23 177-198 (373)
272 PRK10605 N-ethylmaleimide redu 20.7 1.1E+02 0.0024 23.7 2.9 23 2-26 83-105 (362)
273 PRK03244 argD acetylornithine 20.6 1.3E+02 0.0029 22.7 3.3 29 2-30 208-236 (398)
274 COG3669 Alpha-L-fucosidase [Ca 20.6 81 0.0018 25.6 2.1 39 2-44 105-144 (430)
275 cd01166 KdgK 2-keto-3-deoxyglu 20.5 91 0.002 22.1 2.3 21 2-22 147-167 (294)
276 cd00738 HGTP_anticodon HGTP an 20.5 80 0.0017 18.4 1.7 18 2-19 22-39 (94)
277 TIGR02826 RNR_activ_nrdG3 anae 20.5 93 0.002 21.1 2.2 21 2-24 79-99 (147)
278 PLN02855 Bifunctional selenocy 20.5 94 0.002 23.8 2.5 19 2-20 194-212 (424)
279 cd01830 XynE_like SGNH_hydrola 20.5 95 0.0021 21.2 2.3 18 2-19 110-127 (204)
280 cd01316 CAD_DHOase The eukaryo 20.4 69 0.0015 24.6 1.7 24 2-25 163-186 (344)
281 cd06453 SufS_like Cysteine des 20.3 98 0.0021 22.9 2.5 18 2-19 160-177 (373)
282 PRK08175 aminotransferase; Val 20.3 93 0.002 23.6 2.4 21 2-22 188-208 (395)
283 PRK13237 tyrosine phenol-lyase 20.1 98 0.0021 25.2 2.6 18 2-19 202-219 (460)
284 PLN02543 pfkB-type carbohydrat 20.0 80 0.0017 25.8 2.1 19 2-20 288-306 (496)
No 1
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=99.82 E-value=1.9e-20 Score=150.21 Aligned_cols=87 Identities=25% Similarity=0.494 Sum_probs=73.8
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeCCCCcCCCCccccCcccccccCCcccccccceEE
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVWIPGLLKKSRKFVNKKCSSLVTRLEIWYV 81 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~~~~~~~~g~~p~~~~~~~~~~w~~~~~~~q~y~ 81 (92)
+||++||++|||||||+|+||+|.+|+||+++.+++++|+|||+|.+... ...+.++.+++++++|.|++.+++||+
T Consensus 85 ~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~---~~~~~~~~~~~~~~~w~~~~~~~~~y~ 161 (551)
T PRK10933 85 ELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEP---ETPPNNWRSKFGGSAWRWHAESEQYYL 161 (551)
T ss_pred HHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCC---CCCCCcccccCCCccccccCCCCceEe
Confidence 69999999999999999999999999999999878899999999986432 112234566778899999999999999
Q ss_pred EeeeCCCCCC
Q psy15652 82 AVKCDKDVTF 91 (92)
Q Consensus 82 h~~~~~~~~~ 91 (92)
|.|....+|+
T Consensus 162 ~~f~~~~pdL 171 (551)
T PRK10933 162 HLFAPEQADL 171 (551)
T ss_pred ecccccCCcc
Confidence 9998666664
No 2
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=99.82 E-value=3e-20 Score=148.64 Aligned_cols=86 Identities=30% Similarity=0.520 Sum_probs=74.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeCCCCcCCCCccccCcccccccCCcccccccceEE
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVWIPGLLKKSRKFVNKKCSSLVTRLEIWYV 81 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~~~~~~~~g~~p~~~~~~~~~~w~~~~~~~q~y~ 81 (92)
+||++||++||+||||+|+||||.+|+||+++++++++|+|||+|.+... ..+..+.+.+++++|.+++.+++||+
T Consensus 79 ~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~----~~~~~~~~~~~~~~w~~~~~~~~~y~ 154 (543)
T TIGR02403 79 ELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKG----KPPTNWQSKFGGSAWEYFGDTGQYYL 154 (543)
T ss_pred HHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCC----CCCCcccccCCCcCccccCCCCceEE
Confidence 69999999999999999999999999999999888999999999987531 12234566778899999999999999
Q ss_pred EeeeCCCCCC
Q psy15652 82 AVKCDKDVTF 91 (92)
Q Consensus 82 h~~~~~~~~~ 91 (92)
|.|...++|+
T Consensus 155 ~~f~~~~pdl 164 (543)
T TIGR02403 155 HLFDKTQADL 164 (543)
T ss_pred eccCCcCCcc
Confidence 9998877665
No 3
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.9e-17 Score=127.54 Aligned_cols=88 Identities=26% Similarity=0.446 Sum_probs=72.9
Q ss_pred ChhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcC-CCCCC-CcEEEeCCCCcCCCCccccCcccccccCCcccccccc
Q psy15652 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAG-IAPYD-EYYVWKEGKGVWIPGLLKKSRKFVNKKCSSLVTRLEI 78 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~-~s~~~-d~f~~~~~~~~~~~g~~p~~~~~~~~~~w~~~~~~~q 78 (92)
++||+++|+|||+||+|+|+||+|.+|+||+++.+. .++.+ +||+|.+...+ ...+..+.+.+++++|++ ....+
T Consensus 80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~ 156 (505)
T COG0366 80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPD--GTPPNNWFSVFGGDAWTW-GNTGE 156 (505)
T ss_pred HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCccc--CCCCCcchhhcCCCCCCc-CCCCc
Confidence 379999999999999999999999999999999985 44565 99999986542 122233466788999988 78899
Q ss_pred eEEEeeeCCCCCC
Q psy15652 79 WYVAVKCDKDVTF 91 (92)
Q Consensus 79 ~y~h~~~~~~~~~ 91 (92)
||+|.|+..++|+
T Consensus 157 ~~~~~~~~~~~dl 169 (505)
T COG0366 157 YYLHLFSSEQPDL 169 (505)
T ss_pred eEEEecCCCCCCc
Confidence 9999999999865
No 4
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.72 E-value=1.2e-17 Score=133.22 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=61.2
Q ss_pred HHHHHcCCEEEEEeccccCCCCchhHHHHhc--CCCCCCCcEEEeCCCCcCCCCccc-cCccccc---cc---CCccccc
Q psy15652 5 EEDAVTGIKILLDYVPNHTSDEHDWFAKSKA--GIAPYDEYYVWKEGKGVWIPGLLK-KSRKFVN---KK---CSSLVTR 75 (92)
Q Consensus 5 ~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~--~~s~~~d~f~~~~~~~~~~~g~~p-~~~~~~~---~~---~w~~~~~ 75 (92)
+++- +||+||+|+|+||||++|||||++++ ++|+|+|||+|.+...+ ++.++ .+.+++. ++ .|++.+.
T Consensus 72 ~~L~-~giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~--~~~~~~~~~~if~~~~g~~~~~~~~~~~ 148 (495)
T PRK13840 72 KALG-KTHDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFP--DGATEEDLAGIYRPRPGLPFTTYTLADG 148 (495)
T ss_pred HHHH-hCCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCc--CCCCCcccccccCCCCCCcccceEecCC
Confidence 3443 39999999999999999999999975 48999999999874321 12111 1122232 22 4567778
Q ss_pred ccceEEEeeeCCCCCC
Q psy15652 76 LEIWYVAVKCDKDVTF 91 (92)
Q Consensus 76 ~~q~y~h~~~~~~~~~ 91 (92)
..+||+|.|...++|+
T Consensus 149 ~~~~~w~tF~~~QpDL 164 (495)
T PRK13840 149 KTRLVWTTFTPQQIDI 164 (495)
T ss_pred CceEEeccCCccccee
Confidence 8899999999888875
No 5
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=99.71 E-value=3.4e-17 Score=130.76 Aligned_cols=85 Identities=27% Similarity=0.571 Sum_probs=67.7
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcC-CCCCCCcEEEeCCCCcCCCCccccCcc-cc--cccCCccccccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAG-IAPYDEYYVWKEGKGVWIPGLLKKSRK-FV--NKKCSSLVTRLE 77 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~-~s~~~d~f~~~~~~~~~~~g~~p~~~~-~~--~~~~w~~~~~~~ 77 (92)
+||++||++||+||||+|+||+|.+|+||+++++. +++|++||+|.+.... ++.+.. +. .++.|.+++.+.
T Consensus 80 ~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~w~~~~~~~ 154 (539)
T TIGR02456 80 DFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEK-----YKDTRIIFVDTEKSNWTFDPVAK 154 (539)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcc-----cccccccccccCCCCccccCCcC
Confidence 79999999999999999999999999999999874 7899999999764321 111111 11 245688889999
Q ss_pred ceEEEeeeCCCCCC
Q psy15652 78 IWYVAVKCDKDVTF 91 (92)
Q Consensus 78 q~y~h~~~~~~~~~ 91 (92)
+||+|.|....+|+
T Consensus 155 ~~y~~~f~~~~pdl 168 (539)
T TIGR02456 155 QYYWHRFFSHQPDL 168 (539)
T ss_pred eeEEecccCCCCcc
Confidence 99999988777665
No 6
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.70 E-value=2.7e-17 Score=134.37 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=71.2
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcE-----------EEeCCCCcC--------------CCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY-----------VWKEGKGVW--------------IPG 56 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f-----------~~~~~~~~~--------------~~g 56 (92)
+|+++||++|||||+|+|+||||..|+ |+.|....++|.+|| +|.+.+..+ ..|
T Consensus 134 ~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g 212 (688)
T TIGR02455 134 QLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKH 212 (688)
T ss_pred HHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhcc
Confidence 799999999999999999999999999 999888899999999 777654421 112
Q ss_pred ccccC---ccc----ccccCCccc--------ccccceEEEeeeCCCCCC
Q psy15652 57 LLKKS---RKF----VNKKCSSLV--------TRLEIWYVAVKCDKDVTF 91 (92)
Q Consensus 57 ~~p~~---~~~----~~~~~w~~~--------~~~~q~y~h~~~~~~~~~ 91 (92)
.-|.. -.| ...+.|+++ +.+.|||+|.|...++|+
T Consensus 213 ~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdL 262 (688)
T TIGR02455 213 YIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSL 262 (688)
T ss_pred CcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCcc
Confidence 21211 122 346799999 999999999999999886
No 7
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.66 E-value=4.7e-17 Score=129.18 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=57.9
Q ss_pred CEEEEEeccccCCCCchhHHHHhcC--CCCCCCcEE-----EeCCCC---cCCCCccccCcccccccCCcccccccceEE
Q psy15652 12 IKILLDYVPNHTSDEHDWFAKSKAG--IAPYDEYYV-----WKEGKG---VWIPGLLKKSRKFVNKKCSSLVTRLEIWYV 81 (92)
Q Consensus 12 mkvilD~V~NH~s~~h~wf~~a~~~--~s~~~d~f~-----~~~~~~---~~~~g~~p~~~~~~~~~~w~~~~~~~q~y~ 81 (92)
||||+|+|+||||++||||++++++ +++|+|||+ |.+... +.+...+|++.+-+ ..|++.....+||+
T Consensus 73 ~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~--~~~~~~~~~~~~~w 150 (470)
T TIGR03852 73 YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPY--QEVTFADGSTEKVW 150 (470)
T ss_pred hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCC--CceEEcCCCCeEEE
Confidence 9999999999999999999999974 899999999 443211 11122222222211 24778888899999
Q ss_pred EeeeCCCCCC
Q psy15652 82 AVKCDKDVTF 91 (92)
Q Consensus 82 h~~~~~~~~~ 91 (92)
|.|...|+|+
T Consensus 151 ~tF~~~QpDL 160 (470)
T TIGR03852 151 NTFGEEQIDL 160 (470)
T ss_pred ccCCcccccc
Confidence 9999999986
No 8
>KOG0471|consensus
Probab=99.65 E-value=1.2e-16 Score=128.37 Aligned_cols=89 Identities=24% Similarity=0.353 Sum_probs=77.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeCCCCcCCCCccccCcc---cccccCCcccccccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVWIPGLLKKSRK---FVNKKCSSLVTRLEI 78 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~~~~~~~~g~~p~~~~---~~~~~~w~~~~~~~q 78 (92)
+||+++|++||+||+|+|+||++.+|+||......+..|.|||.|.++.... .|.+-|+.+ ++.+++|.+++.+++
T Consensus 92 ~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~-~g~~~~p~nw~~~~~~s~~~~~e~~~~ 170 (545)
T KOG0471|consen 92 ELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLD-VGKRIPPLNWLSVFGGSAWPFDEGRQK 170 (545)
T ss_pred HHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCccccc-ccCCCCccchHhhhccccCcccccccc
Confidence 6999999999999999999999999999998777554599999999987765 676655544 577999999999999
Q ss_pred eEEEeeeCCCCCC
Q psy15652 79 WYVAVKCDKDVTF 91 (92)
Q Consensus 79 ~y~h~~~~~~~~~ 91 (92)
+|+|++.-.++|+
T Consensus 171 ~~l~~~~~~~pDl 183 (545)
T KOG0471|consen 171 YYLGQFAVLQPDL 183 (545)
T ss_pred eeccchhhcCCCC
Confidence 9999998888775
No 9
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.57 E-value=2.3e-15 Score=108.21 Aligned_cols=48 Identities=48% Similarity=0.940 Sum_probs=44.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc-CCCCCCCcEEEeCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA-GIAPYDEYYVWKEG 49 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~-~~s~~~d~f~~~~~ 49 (92)
+||++||++||+||||+|+||+|..|+||+.+.+ .+.++.+||.|.+.
T Consensus 56 ~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (316)
T PF00128_consen 56 ELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDG 104 (316)
T ss_dssp HHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESB
T ss_pred hhhhccccccceEEEeeeccccccccccccccccccccccccceeeccc
Confidence 7999999999999999999999999999999887 56779999999865
No 10
>PRK10785 maltodextrin glucosidase; Provisional
Probab=99.44 E-value=1.2e-13 Score=111.84 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=43.0
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc--------CCCCCCCcEEEeCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA--------GIAPYDEYYVWKEG 49 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~--------~~s~~~d~f~~~~~ 49 (92)
+||++||++|||||||+|+||||..|+||+++.. .+|+|+|||.|.+.
T Consensus 230 ~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~ 285 (598)
T PRK10785 230 RLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDD 285 (598)
T ss_pred HHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCC
Confidence 7999999999999999999999999999998753 25899999999763
No 11
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.25 E-value=7.1e-12 Score=105.03 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=41.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCC---chhHHHHhc--CCCCCCCcEEEe
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDE---HDWFAKSKA--GIAPYDEYYVWK 47 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~---h~wf~~a~~--~~s~~~d~f~~~ 47 (92)
+||++||++||+||||+|+||+|.. |+||+++++ .+|+|++||.+.
T Consensus 69 ~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdid 119 (825)
T TIGR02401 69 RLSEAARARGLGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDID 119 (825)
T ss_pred HHHHHHHHCCCEEEEEecccccccccccChHHHHHHHhCCCCCccCceEEe
Confidence 6999999999999999999999986 899999987 489999999654
No 12
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.19 E-value=2.5e-11 Score=102.27 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=40.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC---CchhHHHHhc--CCCCCCCcEEE
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD---EHDWFAKSKA--GIAPYDEYYVW 46 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~---~h~wf~~a~~--~~s~~~d~f~~ 46 (92)
+||++||++||+||||+|+||+|. +|+||++.++ ..|+|++||.+
T Consensus 73 ~Lv~aah~~Gi~VIlDiV~NH~~~~~~~n~ww~dvl~~g~~S~y~~~Fdi 122 (879)
T PRK14511 73 RLAAALRAHGMGLILDIVPNHMAVGGPDNPWWWDVLEWGRSSPYADFFDI 122 (879)
T ss_pred HHHHHHHHCCCEEEEEeccccccCcCccCHHHHHHHHhCCCCCccCceee
Confidence 699999999999999999999987 4589999887 48999999953
No 13
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.18 E-value=2.3e-11 Score=107.53 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=42.2
Q ss_pred hhHHHHHHcCCEEEEEeccccCC---CCchhHHHHhc--CCCCCCCcEEEe
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTS---DEHDWFAKSKA--GIAPYDEYYVWK 47 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s---~~h~wf~~a~~--~~s~~~d~f~~~ 47 (92)
+||++||++||+||||+|+||+| .+|+||+++++ .+|+|++||.+.
T Consensus 811 ~Lv~~ah~~Gi~vilDiV~NH~~~~~~~n~w~~dvl~~g~~S~y~~~Fdid 861 (1693)
T PRK14507 811 RFCAALKAHGLGQLLDIVPNHMGVGGADNPWWLDVLENGPASPAADAFDID 861 (1693)
T ss_pred HHHHHHHHCCCEEEEEecccccCCCccCCHHHHHHHHhCCCCCccCeeeec
Confidence 69999999999999999999998 57999999987 489999999864
No 14
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=6.4e-10 Score=92.59 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=42.3
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC---CchhHHHHhc--CCCCCCCcEEEeC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD---EHDWFAKSKA--GIAPYDEYYVWKE 48 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~---~h~wf~~a~~--~~s~~~d~f~~~~ 48 (92)
+|++++|++||+||+|+||||++. ++||+.+.++ ++|.|.+||.+.-
T Consensus 72 rLvaalk~~GlGlI~DIVPNHMav~g~~N~ww~DVLe~G~~S~ya~yFDI~W 123 (889)
T COG3280 72 RLVAALKSRGLGLIVDIVPNHMAVGGHENPWWWDVLENGRDSAYANYFDIDW 123 (889)
T ss_pred HHHHHHHhcCCceEEEecccchhcccccChHHHHHHHhCcCccchhhccccc
Confidence 699999999999999999999965 5899999998 4899999998653
No 15
>PRK09505 malS alpha-amylase; Reviewed
Probab=98.86 E-value=4.1e-09 Score=87.21 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=34.3
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC------CchhHHHHh----c-CCCCCCCcEEEeC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD------EHDWFAKSK----A-GIAPYDEYYVWKE 48 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~------~h~wf~~a~----~-~~s~~~d~f~~~~ 48 (92)
+||++||++|||||||+|+||++. ++.||+... + ......+|+.|++
T Consensus 296 ~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~ 353 (683)
T PRK09505 296 TLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQP 353 (683)
T ss_pred HHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccc
Confidence 699999999999999999999995 344676642 1 2334456666654
No 16
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=98.79 E-value=2.8e-09 Score=84.28 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.8
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC--CchhHHH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD--EHDWFAK 32 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~--~h~wf~~ 32 (92)
+||++||+||||||+|+|+||+|. .|+||+.
T Consensus 85 ~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~ 117 (479)
T PRK09441 85 NAIDALHENGIKVYADVVLNHKAGADEKETFRV 117 (479)
T ss_pred HHHHHHHHCCCEEEEEECcccccCCCcceeeee
Confidence 799999999999999999999985 4579873
No 17
>smart00642 Aamy Alpha-amylase domain.
Probab=98.65 E-value=2.1e-08 Score=69.96 Aligned_cols=24 Identities=50% Similarity=0.663 Sum_probs=23.2
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
+||++||++||+||+|+|+||+|.
T Consensus 74 ~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 74 ELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCC
Confidence 699999999999999999999997
No 18
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=98.55 E-value=5.2e-08 Score=82.75 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=34.3
Q ss_pred ChhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEe
Q psy15652 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWK 47 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~ 47 (92)
++||++||++||+||||+|+|||+..+++++..+.+..| .||+..
T Consensus 407 k~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P--~YY~r~ 451 (898)
T TIGR02103 407 REMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVP--GYYHRL 451 (898)
T ss_pred HHHHHHHHHCCCEEEEEeecccccccCccCcccccccCc--HhhEee
Confidence 368999999999999999999999998877644443222 455544
No 19
>PLN02877 alpha-amylase/limit dextrinase
Probab=98.54 E-value=9.9e-08 Score=81.55 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=36.5
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHH-hcCCCCCCCcEEEeCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKS-KAGIAPYDEYYVWKEG 49 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a-~~~~s~~~d~f~~~~~ 49 (92)
+||++||++||+||||+|+||++..+||+..+ +.+-.| +||++.+.
T Consensus 470 ~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP--~YY~r~~~ 516 (970)
T PLN02877 470 KMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVP--GYYLRRNS 516 (970)
T ss_pred HHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCC--CceEEECC
Confidence 79999999999999999999999999987543 333333 67777653
No 20
>PLN00196 alpha-amylase; Provisional
Probab=98.53 E-value=5.2e-08 Score=76.89 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=25.6
Q ss_pred ChhHHHHHHcCCEEEEEeccccCCCCch
Q psy15652 1 MEEEEEDAVTGIKILLDYVPNHTSDEHD 28 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvilD~V~NH~s~~h~ 28 (92)
++||++||++|||||+|+|+||++..|.
T Consensus 95 k~Lv~~aH~~GIkVilDvV~NH~~~~~~ 122 (428)
T PLN00196 95 KSLIEAFHGKGVQVIADIVINHRTAEHK 122 (428)
T ss_pred HHHHHHHHHCCCEEEEEECccCcccccc
Confidence 3799999999999999999999998764
No 21
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=98.48 E-value=1.6e-07 Score=76.44 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=26.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC-CchhHHH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD-EHDWFAK 32 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~-~h~wf~~ 32 (92)
+||++||++||+||||+|+||++. .+..|+.
T Consensus 233 ~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~ 264 (605)
T TIGR02104 233 QMIQALHENGIRVIMDVVYNHTYSREESPFEK 264 (605)
T ss_pred HHHHHHHHCCCEEEEEEEcCCccCCCCCcccC
Confidence 699999999999999999999974 4555653
No 22
>PRK12313 glycogen branching enzyme; Provisional
Probab=98.47 E-value=1e-07 Score=77.83 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=25.1
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCch
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHD 28 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~ 28 (92)
+||++||++||+||||+|+||++.++.
T Consensus 224 ~lv~~~H~~Gi~VilD~V~nH~~~~~~ 250 (633)
T PRK12313 224 YLVDALHQNGIGVILDWVPGHFPKDDD 250 (633)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCcc
Confidence 799999999999999999999997754
No 23
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=98.46 E-value=1.2e-07 Score=76.60 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=26.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF 30 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf 30 (92)
+||++||++||+||||+|+||++.++.++
T Consensus 164 ~lV~~aH~~Gi~VilD~V~NH~~~~~~~~ 192 (542)
T TIGR02402 164 ALVDAAHGLGLGVILDVVYNHFGPEGNYL 192 (542)
T ss_pred HHHHHHHHCCCEEEEEEccCCCCCccccc
Confidence 79999999999999999999999876655
No 24
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=98.45 E-value=1.4e-07 Score=77.08 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.8
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFA 31 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~ 31 (92)
+||++||++||+||||+|+||++.++..+.
T Consensus 210 ~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 239 (613)
T TIGR01515 210 YFVDACHQAGIGVILDWVPGHFPKDDHGLA 239 (613)
T ss_pred HHHHHHHHCCCEEEEEecccCcCCccchhh
Confidence 799999999999999999999998765543
No 25
>PRK03705 glycogen debranching enzyme; Provisional
Probab=98.45 E-value=3e-07 Score=75.97 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC---CchhH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD---EHDWF 30 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~---~h~wf 30 (92)
+||++||++||+||||+|+|||+. .+|++
T Consensus 246 ~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~ 277 (658)
T PRK03705 246 DAVKALHKAGIEVILDVVFNHSAELDLDGPTL 277 (658)
T ss_pred HHHHHHHHCCCEEEEEEcccCccCcCCCCcch
Confidence 699999999999999999999986 35554
No 26
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=98.44 E-value=2.2e-07 Score=77.06 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=25.7
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchh
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDW 29 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~w 29 (92)
+||++||++||+||||+|+||++..++.
T Consensus 249 ~LV~~~H~~GI~VIlDvV~NHt~~~~~~ 276 (688)
T TIGR02100 249 TMVRALHDAGIEVILDVVYNHTAEGNEL 276 (688)
T ss_pred HHHHHHHHCCCEEEEEECcCCccCcCCC
Confidence 7999999999999999999999987653
No 27
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.41 E-value=1.7e-07 Score=77.81 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=26.1
Q ss_pred ChhHHHHHHcCCEEEEEeccccCCCCchhH
Q psy15652 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWF 30 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvilD~V~NH~s~~h~wf 30 (92)
.+||++||++||+||||+|+||++.++..+
T Consensus 318 k~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 347 (726)
T PRK05402 318 RYFVDACHQAGIGVILDWVPAHFPKDAHGL 347 (726)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCccch
Confidence 379999999999999999999998765543
No 28
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=98.31 E-value=6e-07 Score=78.32 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF 30 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf 30 (92)
+||++||++||+||||+|+|||+..+.+.
T Consensus 251 ~lV~~~H~~GI~VILDvV~NHt~~~~~~~ 279 (1221)
T PRK14510 251 QAIKEAQSAGIAVILDVVFNHTGESNHYG 279 (1221)
T ss_pred HHHHHHHHCCCEEEEEEccccccCCCCCC
Confidence 69999999999999999999999887765
No 29
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=98.29 E-value=3.9e-07 Score=78.90 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=31.2
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKE 48 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~ 48 (92)
+||++||++||+||||+|+||++..++ |+.. ...||.+.+
T Consensus 559 ~LV~alH~~GI~VILDVVyNHt~~~~~-f~~~------~p~Yy~~~~ 598 (1111)
T TIGR02102 559 NLINEIHKRGMGVILDVVYNHTAKVYI-FEDL------EPNYYHFMD 598 (1111)
T ss_pred HHHHHHHHCCCEEEEeccccccccccc-cccc------CCCceEeeC
Confidence 799999999999999999999998764 4331 224666654
No 30
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=98.26 E-value=7.1e-07 Score=78.59 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=29.6
Q ss_pred hhHHHHHHc-CCEEEEEeccccCCCCchhHHH
Q psy15652 2 EEEEEDAVT-GIKILLDYVPNHTSDEHDWFAK 32 (92)
Q Consensus 2 ~Lv~~~h~~-gmkvilD~V~NH~s~~h~wf~~ 32 (92)
+||+++|++ ||++|+|+|+|||+.+|+|+++
T Consensus 188 ~lV~~~h~~~Gm~~ilDvV~NHTa~ds~Wl~e 219 (1464)
T TIGR01531 188 ALVEKLHRDWNVLSITDIVFNHTANNSPWLLE 219 (1464)
T ss_pred HHHHHHHHhcCCEEEEEeeecccccCCHHHHh
Confidence 689999997 9999999999999999999985
No 31
>PLN02361 alpha-amylase
Probab=98.18 E-value=1.2e-06 Score=68.87 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=22.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
+||++||++||+||+|+|+||++.
T Consensus 80 ~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 80 SLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHHHHcCCEEEEEEccccccC
Confidence 699999999999999999999854
No 32
>PRK14706 glycogen branching enzyme; Provisional
Probab=98.18 E-value=1.2e-06 Score=72.28 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=26.0
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF 30 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf 30 (92)
+||++||++||+||||+|+||++.++.++
T Consensus 221 ~lv~~~H~~gi~VilD~v~nH~~~~~~~l 249 (639)
T PRK14706 221 YLVNHLHGLGIGVILDWVPGHFPTDESGL 249 (639)
T ss_pred HHHHHHHHCCCEEEEEecccccCcchhhh
Confidence 69999999999999999999999876543
No 33
>PLN02960 alpha-amylase
Probab=98.15 E-value=1.5e-06 Score=73.80 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=25.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchh
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDW 29 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~w 29 (92)
+||++||++||+||||+|+||++.++++
T Consensus 470 ~LVd~aH~~GI~VILDvV~NH~~~d~~~ 497 (897)
T PLN02960 470 RLVDEAHGLGLLVFLDIVHSYAAADEMV 497 (897)
T ss_pred HHHHHHHHCCCEEEEEecccccCCcccc
Confidence 6999999999999999999999998654
No 34
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=98.11 E-value=4e-06 Score=69.86 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=31.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGK 50 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~~~ 50 (92)
.||+++|++||.||||+|+|||+..+.--... .-+.---++|++.++.
T Consensus 269 ~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~-~f~~id~~~Yyr~~~d 316 (697)
T COG1523 269 DMVKALHKAGIEVILDVVFNHTAEGNELGPTL-SFRGIDPNYYYRLDPD 316 (697)
T ss_pred HHHHHHHHcCCEEEEEEeccCcccccCcCccc-ccccCCcCceEEECCC
Confidence 68999999999999999999997542211110 0012234577777653
No 35
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=98.09 E-value=2.3e-06 Score=71.84 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=24.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCch
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHD 28 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~ 28 (92)
+||++||++||+||||+|+||++..+.
T Consensus 304 ~LVd~aH~~GI~VilDvV~nH~~~~~~ 330 (758)
T PLN02447 304 YLIDKAHSLGLRVLMDVVHSHASKNTL 330 (758)
T ss_pred HHHHHHHHCCCEEEEEecccccccccc
Confidence 699999999999999999999998653
No 36
>PRK12568 glycogen branching enzyme; Provisional
Probab=98.09 E-value=2.5e-06 Score=71.40 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=23.8
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDE 26 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~ 26 (92)
+||++||++||+||||+|+||++..
T Consensus 323 ~lV~~~H~~Gi~VIlD~V~nH~~~d 347 (730)
T PRK12568 323 QFVDACHRAGIGVILDWVSAHFPDD 347 (730)
T ss_pred HHHHHHHHCCCEEEEEeccccCCcc
Confidence 6999999999999999999999976
No 37
>PLN02784 alpha-amylase
Probab=98.08 E-value=5e-06 Score=70.69 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=31.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKE 48 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~ 48 (92)
+||++||++||+||+|+|+||++.. |+..-...++|.+++.|.+
T Consensus 572 ~LI~a~H~~GIkVIlDiViNH~ag~---f~~~~g~~~~f~g~~dW~d 615 (894)
T PLN02784 572 DLVKSFHEVGIKVLGDAVLNHRCAH---FQNQNGVWNIFGGRLNWDD 615 (894)
T ss_pred HHHHHHHHCCCEEEEEECccccccc---ccCCCCcccccCCeecCCC
Confidence 6999999999999999999999753 3332112355666666654
No 38
>PRK14705 glycogen branching enzyme; Provisional
Probab=98.07 E-value=3.1e-06 Score=74.01 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.2
Q ss_pred ChhHHHHHHcCCEEEEEeccccCCCCchhHHH
Q psy15652 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAK 32 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~ 32 (92)
++||++||++||+||||+|+||++.+. |+..
T Consensus 818 k~lVd~~H~~GI~VILD~V~nH~~~d~-~~l~ 848 (1224)
T PRK14705 818 RFLVDSLHQAGIGVLLDWVPAHFPKDS-WALA 848 (1224)
T ss_pred HHHHHHHHHCCCEEEEEeccccCCcch-hhhh
Confidence 369999999999999999999998763 4443
No 39
>PLN03244 alpha-amylase; Provisional
Probab=97.98 E-value=4.4e-06 Score=70.63 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=25.4
Q ss_pred ChhHHHHHHcCCEEEEEeccccCCCCch
Q psy15652 1 MEEEEEDAVTGIKILLDYVPNHTSDEHD 28 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvilD~V~NH~s~~h~ 28 (92)
++||++||++||+||||+|+||++.+..
T Consensus 444 K~LVD~aH~~GI~VILDvV~NH~~~d~~ 471 (872)
T PLN03244 444 KRLVDEAHGLGLLVFLDIVHSYAAADEM 471 (872)
T ss_pred HHHHHHHHHCCCEEEEEecCccCCCccc
Confidence 3699999999999999999999998754
No 40
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.80 E-value=1.7e-05 Score=65.59 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=26.1
Q ss_pred ChhHHHHHHcCCEEEEEeccccCCCCchhH
Q psy15652 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWF 30 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvilD~V~NH~s~~h~wf 30 (92)
++||++||++||.||||.|+||.+.+....
T Consensus 217 k~fVD~aH~~GIgViLD~V~~HF~~d~~~L 246 (628)
T COG0296 217 KALVDAAHQAGIGVILDWVPNHFPPDGNYL 246 (628)
T ss_pred HHHHHHHHHcCCEEEEEecCCcCCCCcchh
Confidence 379999999999999999999998865444
No 41
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=97.09 E-value=0.00054 Score=54.50 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=27.1
Q ss_pred hhHHHH-HHcCCEEEEEeccccCCCCchhHHH
Q psy15652 2 EEEEED-AVTGIKILLDYVPNHTSDEHDWFAK 32 (92)
Q Consensus 2 ~Lv~~~-h~~gmkvilD~V~NH~s~~h~wf~~ 32 (92)
++|.++ ++.||..|.|+|+|||+.+++|.++
T Consensus 80 ~~v~~~~~~~~ll~~~DvV~NHtA~nS~Wl~e 111 (423)
T PF14701_consen 80 EFVKEAEKKYGLLSMTDVVLNHTANNSPWLRE 111 (423)
T ss_pred HHHHHHHHHcCceEEEEEeeccCcCCChHHHh
Confidence 456666 5799999999999999999999975
No 42
>KOG0470|consensus
Probab=96.64 E-value=0.00091 Score=56.25 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=23.2
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
+||++||..||-|+||+|.||++.
T Consensus 315 ~lVd~aHs~GI~VlLDVV~sHaa~ 338 (757)
T KOG0470|consen 315 ELVDKAHSLGIEVLLDVVHSHAAK 338 (757)
T ss_pred HHHHHHhhCCcEEehhhhhhhccc
Confidence 699999999999999999999998
No 43
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.95 E-value=0.016 Score=39.17 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=17.5
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++|++||++||+||.=+-++
T Consensus 48 e~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHCCCEEEEEEeee
Confidence 68999999999999877665
No 44
>KOG2212|consensus
Probab=91.35 E-value=0.097 Score=41.70 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.8
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
.+|..|.+-|.||++|+|+||++.
T Consensus 99 dMV~RCN~VGVRiyVDvv~NHM~g 122 (504)
T KOG2212|consen 99 DMVTRCNNVGVRIYVDAVINHMCG 122 (504)
T ss_pred HHHHHhhccceEEEehhhhhhhcc
Confidence 478999999999999999999974
No 45
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=89.87 E-value=0.31 Score=34.66 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.0
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++|++|+++||+||||+--.
T Consensus 66 ~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 66 RIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHhCCCeEEEEeccC
Confidence 68999999999999999764
No 46
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=89.66 E-value=0.64 Score=35.18 Aligned_cols=33 Identities=6% Similarity=0.032 Sum_probs=27.0
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
++|+++|++|+|||+-+. -+++..++-|+++.+
T Consensus 70 ~mi~~L~~~G~kv~~~i~-P~v~~~~~~y~e~~~ 102 (319)
T cd06591 70 AMVRELHEMNAELMISIW-PTFGPETENYKEMDE 102 (319)
T ss_pred HHHHHHHHCCCEEEEEec-CCcCCCChhHHHHHH
Confidence 689999999999999554 457777888888775
No 47
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=89.10 E-value=0.72 Score=34.45 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=27.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
+||+++|++||++++-+.| +++..++-|+++.+
T Consensus 70 ~~i~~l~~~G~~~~~~~~P-~i~~~~~~~~e~~~ 102 (308)
T cd06593 70 GMLSRLKEKGFKVCLWINP-YIAQKSPLFKEAAE 102 (308)
T ss_pred HHHHHHHHCCCeEEEEecC-CCCCCchhHHHHHH
Confidence 6899999999999999987 67777788877653
No 48
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=88.07 E-value=0.32 Score=36.92 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=23.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCch-hHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHD-WFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~-wf~~a~~ 35 (92)
+||+++|++|+|||+-+. -+++.+++ .|+++.+
T Consensus 75 ~mi~~Lh~~G~~~~~~i~-P~v~~~~~~~y~~~~~ 108 (317)
T cd06594 75 ELIEELKARGIRVLTYIN-PYLADDGPLYYEEAKD 108 (317)
T ss_pred HHHHHHHHCCCEEEEEec-CceecCCchhHHHHHH
Confidence 689999999999999655 45444333 4677664
No 49
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=87.49 E-value=0.5 Score=40.33 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.3
Q ss_pred hHHHHHHcCCEEEEEeccccC
Q psy15652 3 EEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 3 Lv~~~h~~gmkvilD~V~NH~ 23 (92)
-|+++|+.||++|-|.||+.+
T Consensus 652 AikALH~~GiqviaDwVpdQi 672 (809)
T PF02324_consen 652 AIKALHAAGIQVIADWVPDQI 672 (809)
T ss_dssp HHHHHHHTT-EEEEEE-TSEE
T ss_pred HHHHHHHcCcchhhhhchHhh
Confidence 478999999999999999985
No 50
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=87.47 E-value=0.89 Score=34.40 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=26.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
+||+++|++|+|||+-+.| +++..++.|+++.+
T Consensus 77 ~mi~~L~~~g~k~~~~i~P-~i~~~~~~y~e~~~ 109 (317)
T cd06599 77 AFVAKFHERGIRLAPNIKP-GLLQDHPRYKELKE 109 (317)
T ss_pred HHHHHHHHCCCEEEEEeCC-cccCCCHHHHHHHH
Confidence 6899999999999996654 45566788888765
No 51
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=85.53 E-value=1.4 Score=33.15 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=27.5
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
++++++|++|||+++=+-| +++..++.|+++.+
T Consensus 74 ~mi~~l~~~G~k~~l~i~P-~i~~~s~~~~e~~~ 106 (303)
T cd06592 74 GMIDQLHDLGFRVTLWVHP-FINTDSENFREAVE 106 (303)
T ss_pred HHHHHHHHCCCeEEEEECC-eeCCCCHHHHhhhh
Confidence 6899999999999999988 66777788887553
No 52
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=84.72 E-value=0.9 Score=35.22 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=16.5
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
++.++|++.||+|+|||=...
T Consensus 62 ~~akrak~~Gm~vlldfHYSD 82 (332)
T PF07745_consen 62 ALAKRAKAAGMKVLLDFHYSD 82 (332)
T ss_dssp HHHHHHHHTT-EEEEEE-SSS
T ss_pred HHHHHHHHCCCeEEEeecccC
Confidence 678999999999999996544
No 53
>KOG3625|consensus
Probab=84.45 E-value=0.7 Score=41.01 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=26.8
Q ss_pred hhHHHHHH-cCCEEEEEeccccCCCCchhHHH
Q psy15652 2 EEEEEDAV-TGIKILLDYVPNHTSDEHDWFAK 32 (92)
Q Consensus 2 ~Lv~~~h~-~gmkvilD~V~NH~s~~h~wf~~ 32 (92)
+||+++|+ -||--|-|+|+||++.+++|.++
T Consensus 200 ~lV~~l~rewnvlsi~DvV~NHtAnns~Wlle 231 (1521)
T KOG3625|consen 200 QLVEKLKREWNVLSITDVVYNHTANNSKWLLE 231 (1521)
T ss_pred HHHHHHHhhcCeeeeehhhhhccccCCchhHh
Confidence 57888875 58888999999999999999976
No 54
>PRK10658 putative alpha-glucosidase; Provisional
Probab=82.16 E-value=1.9 Score=36.18 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.6
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
++|+++|++|+|||+=+.| +++..++-|+++.+
T Consensus 329 ~mi~~L~~~G~k~~~~i~P-~i~~~s~~f~e~~~ 361 (665)
T PRK10658 329 GMLKRLKAKGLKICVWINP-YIAQKSPLFKEGKE 361 (665)
T ss_pred HHHHHHHHCCCEEEEeccC-CcCCCchHHHHHHH
Confidence 5899999999999998766 56777888988775
No 55
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=78.85 E-value=2.1 Score=33.42 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=16.9
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
+|++.||+.||+||+|+-+.-
T Consensus 51 ~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 51 ELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp HHHHHHHHCT-EEEEEE-CCH
T ss_pred HHHHHHHHCCCEEEEECCHHH
Confidence 688999999999999997754
No 56
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.68 E-value=3.6 Score=31.11 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=26.6
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
+||+++|++|+|||+=+.| +++.+++.|+++.+
T Consensus 74 ~mi~~L~~~G~k~~~~v~P-~v~~~~~~y~e~~~ 106 (317)
T cd06598 74 GMIADLAKKGVKTIVITEP-FVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHcCCcEEEEEcC-cccCCchhHHHHHh
Confidence 6899999999999998764 45666788887665
No 57
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=72.03 E-value=3.4 Score=32.57 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.7
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
+|++.|++.||++|+|+-|.-.
T Consensus 53 ell~~Anklg~~vivDvnPsil 74 (360)
T COG3589 53 ELLKEANKLGLRVIVDVNPSIL 74 (360)
T ss_pred HHHHHHHhcCcEEEEEcCHHHH
Confidence 6899999999999999998743
No 58
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=68.43 E-value=8.4 Score=29.33 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=26.2
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC-CchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD-EHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~-~h~wf~~a~~ 35 (92)
++|+++|++|+|||+-+.|--... .++-|+++.+
T Consensus 68 ~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~ 102 (339)
T cd06603 68 KMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKD 102 (339)
T ss_pred HHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHH
Confidence 589999999999999987655432 3677877765
No 59
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=67.88 E-value=4.6 Score=31.79 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.2
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++.+.|.+.||||++|+-.
T Consensus 108 eiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 108 EIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHhcCcEEEeeccc
Confidence 5678899999999999943
No 60
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=67.56 E-value=9.5 Score=29.21 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=24.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC----CchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD----EHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~----~h~wf~~a~~ 35 (92)
++|+++|++|+|||+=+.|--.-. ..+-|+++++
T Consensus 70 ~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~ 107 (339)
T cd06602 70 EFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLE 107 (339)
T ss_pred HHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHH
Confidence 689999999999999876544332 3566776654
No 61
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=66.55 E-value=6.4 Score=30.39 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=17.7
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+|++++|++||.+|-=+|.
T Consensus 65 ~l~~~l~e~gIY~IARIv~ 83 (316)
T PF13200_consen 65 ALVKKLKEHGIYPIARIVV 83 (316)
T ss_pred HHHHHHHHCCCEEEEEEEE
Confidence 6899999999999999986
No 62
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=66.31 E-value=8.4 Score=29.99 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=25.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCch---hHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHD---WFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~---wf~~a~~ 35 (92)
++++.+|++|+++++-+.| ++....+ .|.++.+
T Consensus 87 ~~~~~l~~~G~~~~~~~~P-~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 87 QMIDELHDQGIKVVLWVHP-FVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHTT-EEEEEEES-EEETTTTB-HHHHHHHH
T ss_pred HHHHhHhhCCcEEEEEeec-ccCCCCCcchhhhhHhh
Confidence 6899999999999999988 5555544 7777764
No 63
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.28 E-value=6.5 Score=29.36 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.8
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
+||+++|++|+|||+-+-|..
T Consensus 78 ~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 78 KLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred HHHHHHHHCCCEEEEEeCCCc
Confidence 689999999999999888864
No 64
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=65.55 E-value=4.5 Score=30.74 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=14.9
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
.+|++||+|||+|.-=+.
T Consensus 74 ~~I~eaHkrGlevHAW~~ 91 (311)
T PF02638_consen 74 FMIEEAHKRGLEVHAWFR 91 (311)
T ss_pred HHHHHHHHcCCEEEEEEE
Confidence 479999999999986553
No 65
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=62.18 E-value=8.1 Score=28.29 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHh
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSK 34 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~ 34 (92)
++|+.+|++|++|++-+.|.- -.||.+-+
T Consensus 70 ~~i~~l~~~g~~~~~~~~P~v----~~w~~~~~ 98 (265)
T cd06589 70 SMIDELHDNGVKLVLWIDPYI----REWWAEVV 98 (265)
T ss_pred HHHHHHHHCCCEEEEEeChhH----HHHHHHHH
Confidence 689999999999999887753 34665533
No 66
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=60.30 E-value=8.8 Score=32.99 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=26.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
+|++.+|++|||+|+=+.|.- ..+++.|+.+++
T Consensus 325 ~mi~~l~~~Gikl~~~i~P~i-~~d~~~~~e~~~ 357 (772)
T COG1501 325 QMIAELHEKGIKLIVIINPYI-KQDSPLFKEAIE 357 (772)
T ss_pred HHHHHHHhcCceEEEEecccc-ccCCchHHHHHH
Confidence 589999999999999887744 445588988875
No 67
>PLN02681 proline dehydrogenase
Probab=58.95 E-value=9.7 Score=30.73 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=20.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHh
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSK 34 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~ 34 (92)
+|+++|.++|++|++|. ++.|+|.++
T Consensus 224 ~i~~~A~~~gv~l~IDA-------E~s~~q~ai 249 (455)
T PLN02681 224 KLCERAAQLGVPLLIDA-------EYTSLQPAI 249 (455)
T ss_pred HHHHHHHHCCCEEEEeC-------CcccchhHH
Confidence 58899999999999998 444555554
No 68
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.64 E-value=11 Score=29.00 Aligned_cols=19 Identities=32% Similarity=0.386 Sum_probs=16.6
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+||+++|++|+||++=+.|
T Consensus 89 ~mi~~Lh~~G~kv~l~v~P 107 (340)
T cd06597 89 GMIDELHEQGVKVLLWQIP 107 (340)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 6899999999999986655
No 69
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=58.16 E-value=14 Score=23.90 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=25.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAK 32 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~ 32 (92)
++++.+.+.|+++++|+=.+=.|. +|.|.+
T Consensus 4 ~f~~~l~~~~i~~lVDVR~~P~S~-~~~~~k 33 (122)
T PF04343_consen 4 RFYDLLKKNGIRVLVDVRLWPRSR-KPGFNK 33 (122)
T ss_pred HHHHHHHHCCCeEEEEECCCCCCC-CCCCCH
Confidence 578889999999999988888888 888865
No 70
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=56.59 E-value=12 Score=25.92 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=18.5
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
.+.++|.+.||||++-+-++.
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCc
Confidence 467899999999999999874
No 71
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=56.37 E-value=12 Score=28.28 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=23.1
Q ss_pred hhHHHHHHcCCEEEEEeccccC-CCCchhHHHHh
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT-SDEHDWFAKSK 34 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~-s~~h~wf~~a~ 34 (92)
++|+++|++|+|||+=+.|--. ....+-|.++.
T Consensus 68 ~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~ 101 (317)
T cd06600 68 KLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGM 101 (317)
T ss_pred HHHHHHHHCCCEEEEEeeccccCCCCChHHHHHH
Confidence 6899999999999997655432 22345566554
No 72
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=54.95 E-value=13 Score=28.58 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=16.4
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++++|++|+|||+-+.|
T Consensus 68 ~mv~~L~~~G~klv~~i~P 86 (332)
T cd06601 68 EMFDNLHNKGLKCSTNITP 86 (332)
T ss_pred HHHHHHHHCCCeEEEEecC
Confidence 6899999999999986654
No 73
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=54.85 E-value=23 Score=26.87 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=24.5
Q ss_pred hhHHHHHHcCCEEEEEeccccC-CCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT-SDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~-s~~h~wf~~a~~ 35 (92)
+|++++|++|+|+|+=+.|.=. ....+-|+++++
T Consensus 68 ~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~ 102 (339)
T cd06604 68 ELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLE 102 (339)
T ss_pred HHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHH
Confidence 6899999999999987665322 224567777664
No 74
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=53.00 E-value=14 Score=23.44 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=19.2
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
+|++.||++|+.+|+|..-.-...
T Consensus 113 ~l~~~~~~~~~~li~D~a~~~~~~ 136 (170)
T cd01494 113 EIRKIAKEYGILLLVDAASAGGAS 136 (170)
T ss_pred HHHHHHHHcCCEEEEecccccccc
Confidence 688999999999999987654333
No 75
>PLN02635 disproportionating enzyme
Probab=51.97 E-value=15 Score=30.44 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=19.3
Q ss_pred hhHHHHHHcCCEEEEEecc--ccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVP--NHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~--NH~s~ 25 (92)
+|.+.|+++||+||-|+.+ ++-|.
T Consensus 228 ~l~~yA~~~Gi~L~gDlpi~Va~dSa 253 (538)
T PLN02635 228 AVRSYANEKGISIIGDMPIYVGGHSA 253 (538)
T ss_pred HHHHHHHHCCCEEEEEeecccCCCcH
Confidence 4678899999999999985 45443
No 76
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=51.73 E-value=13 Score=29.10 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=15.3
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
+.|+.|.++||+|+||+
T Consensus 120 ~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 120 EAINWAKKLGIYVLIDL 136 (407)
T ss_pred HHHHHHHhcCeeEEEEe
Confidence 46899999999999995
No 77
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=51.69 E-value=13 Score=28.53 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.1
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+|++||+++|||+.+=+-+
T Consensus 142 El~~A~rk~Glk~G~Y~S~ 160 (346)
T PF01120_consen 142 ELADACRKYGLKFGLYYSP 160 (346)
T ss_dssp HHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHcCCeEEEEecc
Confidence 7899999999999984443
No 78
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=51.64 E-value=13 Score=31.97 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=20.7
Q ss_pred hhHHHHHH---cCCEEEEEeccccCCCC
Q psy15652 2 EEEEEDAV---TGIKILLDYVPNHTSDE 26 (92)
Q Consensus 2 ~Lv~~~h~---~gmkvilD~V~NH~s~~ 26 (92)
.+|+++|. ..|+||+|+|.-|.-.+
T Consensus 312 dfiatLHnFp~gPIqvIyDlVyGHADNQ 339 (811)
T PF14872_consen 312 DFIATLHNFPTGPIQVIYDLVYGHADNQ 339 (811)
T ss_pred HHHHHHhcCCCCCeEEEEeeecccccch
Confidence 47788886 56999999999998654
No 79
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=50.29 E-value=16 Score=29.78 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=17.3
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++.+.|+++||+||-|+.+-
T Consensus 202 ~~~~yA~~~Gi~L~gDLpig 221 (497)
T PRK14508 202 ALKAYANDKGIEIIGDLPIY 221 (497)
T ss_pred HHHHHHHHCCCEEEEeeecc
Confidence 46778999999999999873
No 80
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=47.32 E-value=13 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=19.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s 24 (92)
+++++||+.||++|+...+..-.
T Consensus 116 ~v~~~~~~~gl~vIlE~~l~~~~ 138 (236)
T PF01791_consen 116 AVVEECHKYGLKVILEPYLRGEE 138 (236)
T ss_dssp HHHHHHHTSEEEEEEEECECHHH
T ss_pred HHHHHHhcCCcEEEEEEecCchh
Confidence 57899999999999998887654
No 81
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=46.16 E-value=29 Score=24.92 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.1
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
+.++.+|++|+|||+=+--+|.+.
T Consensus 55 ~~i~~l~~kG~KVl~sigg~~~~~ 78 (255)
T cd06542 55 TYIRPLQAKGTKVLLSILGNHLGA 78 (255)
T ss_pred HHHHHHhhCCCEEEEEECCCCCCC
Confidence 468889999999999988877654
No 82
>PRK10426 alpha-glucosidase; Provisional
Probab=45.69 E-value=38 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=26.6
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
++|+++|++|+|+|+=+-| ++...++-|+++.+
T Consensus 273 ~mi~~L~~~G~k~v~~i~P-~v~~~~~~y~e~~~ 305 (635)
T PRK10426 273 SRIKQLNEEGIQFLGYINP-YLASDGDLCEEAAE 305 (635)
T ss_pred HHHHHHHHCCCEEEEEEcC-ccCCCCHHHHHHHH
Confidence 6899999999999998765 44456788888775
No 83
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=44.30 E-value=22 Score=27.45 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=15.6
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
+|+..||++|+|||+..-
T Consensus 68 ~~~~~A~~~~v~v~~~~~ 85 (358)
T cd02875 68 ELLCYAHSKGVRLVLKGD 85 (358)
T ss_pred HHHHHHHHcCCEEEEECc
Confidence 689999999999998643
No 84
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=44.23 E-value=20 Score=27.42 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.1
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.|+++||+|||-+.
T Consensus 51 ~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 51 RVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp HHHHHHHCTT-EEEEEEC
T ss_pred HHHHHHHhccCeEEEEec
Confidence 579999999999999775
No 85
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=43.72 E-value=22 Score=26.83 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=20.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
++|++++++|+.||+|+=..-.++
T Consensus 77 ~~i~~l~~~g~~VilD~K~~DI~n 100 (278)
T PRK00125 77 RTIAYLREAGVLVIADAKRGDIGS 100 (278)
T ss_pred HHHHHHHHCCCcEEEEeecCChHH
Confidence 478999999999999998877653
No 86
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=43.57 E-value=22 Score=26.76 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.3
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++.+-||++||+|.||.-
T Consensus 149 ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 149 AISELAREHGLPLHMDGA 166 (290)
T ss_dssp HHHHHHHHHT-EEEEEET
T ss_pred HHHHHHHhCceEEEEehh
Confidence 578899999999999985
No 87
>TIGR03356 BGL beta-galactosidase.
Probab=43.49 E-value=22 Score=28.16 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=16.5
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++|++|.++||++|+++.
T Consensus 98 ~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 98 RLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHHHHHHcCCeeEEeec
Confidence 689999999999999984
No 88
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=42.06 E-value=26 Score=26.15 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=19.7
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
++++.++++|+.||+|+=..-.++
T Consensus 77 ~~~~~~~~~g~~VilD~K~~DIpn 100 (261)
T TIGR02127 77 EVIAHARSLGLPVLADVKRGDIGS 100 (261)
T ss_pred HHHHHHHHCCCeEEEEeeccChHH
Confidence 355899999999999998876653
No 89
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=41.98 E-value=28 Score=24.08 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=15.2
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
++++.++++||++++++
T Consensus 93 ~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 93 GAVKAAKKHGKEVQVDL 109 (206)
T ss_pred HHHHHHHHcCCEEEEEe
Confidence 57899999999999985
No 90
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=41.67 E-value=27 Score=26.00 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=18.7
Q ss_pred hhHHHHHHcCCEEEEEe-ccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDY-VPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~-V~NH~s~ 25 (92)
+||+-|+++||.||-.+ +|-|++.
T Consensus 77 ~lv~yA~~~gI~VIPeid~PGH~~~ 101 (351)
T PF00728_consen 77 ELVAYAKERGIEVIPEIDTPGHAEA 101 (351)
T ss_dssp HHHHHHHHTT-EEEEEEEESSS-HH
T ss_pred HHHHHHHHcCCceeeeccCchHHHH
Confidence 68999999999999776 4788764
No 91
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=40.08 E-value=26 Score=26.44 Aligned_cols=15 Identities=7% Similarity=0.315 Sum_probs=13.7
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++|++||++||+|..
T Consensus 242 ~~V~~ah~~Gl~V~~ 256 (302)
T cd08571 242 SVVQDAHKAGLEVYV 256 (302)
T ss_pred HHHHHHHHcCCEEEE
Confidence 689999999999976
No 92
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=39.01 E-value=32 Score=27.86 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=16.0
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
++.+.|+++||+||.|+.+-=
T Consensus 196 ~~~~~A~~~gI~L~gDlpigv 216 (496)
T PF02446_consen 196 AAKEYAREMGIGLIGDLPIGV 216 (496)
T ss_dssp HHHHHHHHTT-EEEEEEESS-
T ss_pred HHHHHHHHCCCEEEEeccceE
Confidence 466789999999999998743
No 93
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.77 E-value=22 Score=28.65 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=11.9
Q ss_pred hhHHHHHHcCCEEE
Q psy15652 2 EEEEEDAVTGIKIL 15 (92)
Q Consensus 2 ~Lv~~~h~~gmkvi 15 (92)
..|++||+|||+|+
T Consensus 119 ~~I~~AHkr~l~v~ 132 (418)
T COG1649 119 FVIAEAHKRGLEVH 132 (418)
T ss_pred HHHHHHHhcCCeee
Confidence 36899999999983
No 94
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=38.74 E-value=27 Score=27.49 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=14.9
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
+|++||+++|||+-+=+
T Consensus 132 el~~A~rk~Glk~G~Y~ 148 (384)
T smart00812 132 ELADAVRKRGLKFGLYH 148 (384)
T ss_pred HHHHHHHHcCCeEEEEc
Confidence 78999999999998843
No 95
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=38.35 E-value=30 Score=24.48 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=13.6
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++|+++|++|++|+.
T Consensus 192 ~~v~~~~~~G~~v~~ 206 (233)
T cd08582 192 AFIKALRDAGLKLNV 206 (233)
T ss_pred HHHHHHHHCCCEEEE
Confidence 689999999999976
No 96
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=37.81 E-value=29 Score=27.08 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=13.1
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
.||++||++||+|+.
T Consensus 282 ~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 282 EYAKAAKAAGLDIIT 296 (356)
T ss_pred HHHHHHHHcCCEEEE
Confidence 589999999999854
No 97
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=37.66 E-value=27 Score=29.03 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=23.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeCCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKG 51 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~~~~ 51 (92)
++|++||+.||+.|.=..+.=.... +.+ ..--.+|+++.++..
T Consensus 174 ~yI~~ah~~Gmkam~Ynmiyaa~~~--~~~-----~gv~~eW~ly~d~~~ 216 (559)
T PF13199_consen 174 DYINAAHKYGMKAMAYNMIYAANNN--YEE-----DGVSPEWGLYKDDSH 216 (559)
T ss_dssp HHHHHHHHTT-EEEEEEESSEEETT----S-------SS-GGBEEESSSB
T ss_pred HHHHHHHHcCcceehhHhhhccccC--ccc-----ccCCchhhhhhccCC
Confidence 5899999999999975444422221 111 122334777776554
No 98
>COG4702 Uncharacterized conserved protein [Function unknown]
Probab=37.58 E-value=13 Score=26.30 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=17.3
Q ss_pred hHHHHHHcCCEEEEEecccc
Q psy15652 3 EEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 3 Lv~~~h~~gmkvilD~V~NH 22 (92)
+.+++.+++..|++|+.+||
T Consensus 38 IR~~a~k~~~piaIDItL~g 57 (168)
T COG4702 38 IRRAAKKNKLPIAIDITLNG 57 (168)
T ss_pred HHHHHHhcCCCEEEEEEECC
Confidence 45678888999999999997
No 99
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.12 E-value=32 Score=20.41 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.5
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++.+++++.|+++.+|.-..
T Consensus 22 ~la~~Lr~~g~~v~~d~~~~ 41 (94)
T cd00861 22 KLYAELQAAGVDVLLDDRNE 41 (94)
T ss_pred HHHHHHHHCCCEEEEECCCC
Confidence 56788899999999997544
No 100
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=36.78 E-value=33 Score=24.27 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.5
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
+++++++++|++||+=.
T Consensus 48 ~ya~~a~~~g~~viIAg 64 (162)
T COG0041 48 EYAEEAEERGVKVIIAG 64 (162)
T ss_pred HHHHHHHHCCCeEEEec
Confidence 57889999999999854
No 101
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.45 E-value=36 Score=21.38 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=12.7
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+.++.|+++|++||.
T Consensus 65 ~~~~~a~~~g~~vi~ 79 (128)
T cd05014 65 NLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHHHHHCCCeEEE
Confidence 578899999999875
No 102
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=36.27 E-value=32 Score=25.85 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.6
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
+-|++|+++|+||||-+
T Consensus 63 ~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 63 ADIKHCQSKGKKVLLSI 79 (280)
T ss_pred HHHHHHHHCCCEEEEEc
Confidence 35889999999999965
No 103
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=36.13 E-value=34 Score=26.49 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=15.9
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
+|++.|+++|.+|++|.
T Consensus 150 ~li~~~~~~g~~vilD~ 166 (310)
T COG1105 150 ELIRILRQQGAKVILDT 166 (310)
T ss_pred HHHHHHHhcCCeEEEEC
Confidence 68999999999999996
No 104
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=35.93 E-value=36 Score=23.25 Aligned_cols=16 Identities=13% Similarity=-0.089 Sum_probs=13.5
Q ss_pred hhHHHHHHcCCEEEEE
Q psy15652 2 EEEEEDAVTGIKILLD 17 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD 17 (92)
++|+++|++|++|++=
T Consensus 140 ~~v~~~~~~g~~v~~w 155 (179)
T cd08555 140 ELIASANKLGLLSRIW 155 (179)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 5899999999988653
No 105
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=35.62 E-value=38 Score=21.03 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.5
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++++.|+++|+++|+
T Consensus 78 ~~~~~a~~~g~~iv~ 92 (139)
T cd05013 78 EAAEIAKERGAKVIA 92 (139)
T ss_pred HHHHHHHHcCCeEEE
Confidence 578899999999854
No 106
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=35.56 E-value=35 Score=24.35 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.6
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
++|+++|++|++|++=-
T Consensus 222 ~~i~~~~~~G~~v~vwt 238 (263)
T cd08567 222 ELVDEAHALGLKVVPWT 238 (263)
T ss_pred HHHHHHHHCCCEEEEec
Confidence 58999999999998743
No 107
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=35.42 E-value=42 Score=22.94 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=17.7
Q ss_pred hhHHHHHHcCCEEEEEeccccCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s 24 (92)
+++++++++|++++++++-=++.
T Consensus 94 ~~i~~~~~~g~~~~v~~~~~~t~ 116 (202)
T cd04726 94 KAVKAAKKYGKEVQVDLIGVEDP 116 (202)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCH
Confidence 47899999999999995544443
No 108
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=35.10 E-value=32 Score=19.53 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=16.6
Q ss_pred hhHHHHHHcCCEEEEEeccccCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s 24 (92)
+++++|.++||+.|. +-+|-+
T Consensus 19 ~~~~~a~~~g~~~v~--iTDh~~ 39 (67)
T smart00481 19 ELVKRAKELGLKAIA--ITDHGN 39 (67)
T ss_pred HHHHHHHHcCCCEEE--EeeCCc
Confidence 589999999999884 566653
No 109
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=34.92 E-value=37 Score=24.07 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.8
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.|++.|+++|++...
T Consensus 113 ~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 113 RVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHcCCCEEEEEec
Confidence 5778899999999998644
No 110
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=34.79 E-value=34 Score=26.04 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=15.8
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
++++.|+++||.|||-.=|=-+
T Consensus 67 ~f~~~a~~~gl~vilrpGpyi~ 88 (319)
T PF01301_consen 67 RFLDLAQENGLYVILRPGPYIC 88 (319)
T ss_dssp HHHHHHHHTT-EEEEEEES---
T ss_pred HHHHHHHHcCcEEEecccceec
Confidence 5899999999999998765333
No 111
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=34.69 E-value=36 Score=24.39 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=17.7
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
+|++.|+++|+.||+|-+...
T Consensus 156 ~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 156 ELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred HHHHHHHhCCeEEEEecchhh
Confidence 456889999999999998644
No 112
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=34.61 E-value=39 Score=24.61 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=17.1
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.|+++|+.||+|-+-
T Consensus 153 ~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 153 ELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred HHHHHHHHcCCEEEEEccc
Confidence 5788999999999999984
No 113
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=34.22 E-value=39 Score=24.70 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=16.5
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.||++|+.||+|-+
T Consensus 174 ~I~~~~~~~g~~livDeA 191 (294)
T cd00615 174 KIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred HHHHHHHhcCCeEEEECc
Confidence 578999999999999987
No 114
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=34.15 E-value=38 Score=23.58 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.3
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++|+.+|++|++|+.
T Consensus 190 ~~v~~~~~~g~~v~~ 204 (229)
T cd08562 190 EQVKALKDAGYKLLV 204 (229)
T ss_pred HHHHHHHHCCCEEEE
Confidence 589999999999975
No 115
>PLN02950 4-alpha-glucanotransferase
Probab=34.08 E-value=40 Score=29.70 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=17.5
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++.+.|+++||+||-|+.+-
T Consensus 465 ~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 465 EAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHCCCEEEEEeece
Confidence 46788999999999999873
No 116
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=33.83 E-value=40 Score=23.92 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=17.1
Q ss_pred hhHHHHHHc--CCEEEEEecccc
Q psy15652 2 EEEEEDAVT--GIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~--gmkvilD~V~NH 22 (92)
+++++++++ |++|++|-|+..
T Consensus 92 ~~l~~~~~~~~~~~vv~Dpv~~~ 114 (254)
T cd01173 92 EIVKRLKEKNPNLLYVCDPVMGD 114 (254)
T ss_pred HHHHHHHHhCCCceEEECCCCCc
Confidence 567788877 999999998854
No 117
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=32.78 E-value=41 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=13.6
Q ss_pred hhHHHHHHcCCEEEEE
Q psy15652 2 EEEEEDAVTGIKILLD 17 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD 17 (92)
++|+.+|++|++|+.=
T Consensus 200 ~~v~~~~~~g~~v~~W 215 (249)
T PRK09454 200 ARVAALKAAGLRILVY 215 (249)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 5899999999998653
No 118
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=32.77 E-value=43 Score=28.94 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=18.2
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
++.+.|+++||+||-|+.+-=.
T Consensus 278 ~~~~yA~~~GI~L~GDLPIgVa 299 (745)
T PLN03236 278 RAAAHAAAKGVILKGDLPIGVD 299 (745)
T ss_pred HHHHHHHHCCCEEEEEeeceeC
Confidence 4677899999999999988443
No 119
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=32.75 E-value=43 Score=25.60 Aligned_cols=19 Identities=11% Similarity=0.087 Sum_probs=16.5
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++.+.||++|+.|++|.+-
T Consensus 192 ~i~~~~~~~g~~~~vD~aq 210 (406)
T TIGR01814 192 AITRAAHAKGALVGFDLAH 210 (406)
T ss_pred HHHHHHHHcCCEEEEEccc
Confidence 5788999999999999763
No 120
>PTZ00292 ribokinase; Provisional
Probab=32.61 E-value=68 Score=23.55 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=16.3
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+++++|+++|++|++|..+
T Consensus 164 ~~~~~a~~~g~~v~~D~~~ 182 (326)
T PTZ00292 164 DALKEAKERGCYTVFNPAP 182 (326)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 5678899999999999864
No 121
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=32.48 E-value=69 Score=25.96 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=26.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhH-HHHhcCCCCCCCcEEEeCCCCcCCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF-AKSKAGIAPYDEYYVWKEGKGVWIPG 56 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf-~~a~~~~s~~~d~f~~~~~~~~~~~g 56 (92)
+|++.|+++|..||+.. |-|+--.+--. .+..+.-..-+-||+.-+-.+|.-+|
T Consensus 246 eL~~rA~e~gVQvMVEG-PGHVPl~~I~~nv~lqK~lc~~APfYvLGPLvTDiapG 300 (420)
T PF01964_consen 246 ELVKRAREAGVQVMVEG-PGHVPLNQIEANVKLQKRLCHGAPFYVLGPLVTDIAPG 300 (420)
T ss_dssp HHHHHHHHTT--EEEEE--SB--GGGHHHHHHHHHHHTTT--EEEE--BS-SS-TT
T ss_pred HHHHHHHHCCCeEEeeC-CCCCCHHHHHHHHHHHHHhcCCCCcccCCccccccCCC
Confidence 68999999999999999 89986543211 11111112234488888777764333
No 122
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=32.34 E-value=36 Score=26.18 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=16.0
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.|+++|++|++|+.
T Consensus 195 ~~~~~A~~~g~~v~lD~s 212 (367)
T PLN02379 195 AAIRLAKQEGLSVSLDLA 212 (367)
T ss_pred HHHHHHHHcCCEEEEecc
Confidence 578889999999999984
No 123
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=31.88 E-value=42 Score=24.98 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=13.4
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++|++||++||+|..
T Consensus 247 ~~v~~a~~~Gl~v~~ 261 (296)
T cd08559 247 DLVKDAHKAGLLVHP 261 (296)
T ss_pred HHHHHHHHcCCEEEE
Confidence 689999999999876
No 124
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=31.84 E-value=42 Score=24.93 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=16.9
Q ss_pred hhHHHHHHc-CCEEEEEeccccC
Q psy15652 2 EEEEEDAVT-GIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~-gmkvilD~V~NH~ 23 (92)
++|++||++ ||+|.. ..+|-.
T Consensus 220 ~~V~~~h~~~gl~V~~-WTVN~~ 241 (263)
T cd08580 220 AAVDCFRRNSKVKIVL-FGINTA 241 (263)
T ss_pred HHHHHHHhcCCcEEEE-EEeCCH
Confidence 589999999 999987 555653
No 125
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=31.76 E-value=71 Score=25.96 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=35.0
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhH-HHHhcCCCCCCCcEEEeCCCCcCCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF-AKSKAGIAPYDEYYVWKEGKGVWIPG 56 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf-~~a~~~~s~~~d~f~~~~~~~~~~~g 56 (92)
+|++.|+++|..||+.. |-|+--..--. -+..+.-...+-||+.-+-.+|.-+|
T Consensus 250 eL~~RA~e~gVQvMVEG-PGHvPl~~I~~nv~l~K~lc~~APfYvLGPLvTDiApG 304 (431)
T PRK13352 250 ELVKRAREAGVQVMVEG-PGHVPLDQIEANVKLQKRLCHGAPFYVLGPLVTDIAPG 304 (431)
T ss_pred HHHHHHHHcCCeEEEEC-CCCCCHHHHHHHHHHHHHhhCCCCceecCccccccCCC
Confidence 68999999999999999 99986432111 11111112344588888777764444
No 126
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=31.08 E-value=47 Score=23.26 Aligned_cols=17 Identities=18% Similarity=0.052 Sum_probs=14.5
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
++|+.+|++|++|+.=.
T Consensus 181 ~~v~~~~~~G~~v~~wt 197 (220)
T cd08579 181 EFIRQAHQNGKKVYVWT 197 (220)
T ss_pred HHHHHHHHCCCEEEEEc
Confidence 58999999999998754
No 127
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=30.81 E-value=37 Score=25.91 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=12.8
Q ss_pred hhHHHHHHcCCEEE
Q psy15652 2 EEEEEDAVTGIKIL 15 (92)
Q Consensus 2 ~Lv~~~h~~gmkvi 15 (92)
+||++|++.||+|+
T Consensus 97 ~LV~~a~~~gi~V~ 110 (275)
T COG0313 97 ELVRAAREAGIRVV 110 (275)
T ss_pred HHHHHHHHcCCcEE
Confidence 69999999999985
No 128
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=30.77 E-value=53 Score=21.72 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.2
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
++++.+++.|.+|++|.+.-..
T Consensus 75 ~~~~~~~~~~~~v~~D~~~~~~ 96 (196)
T cd00287 75 DALEEARRRGVPVVLDPGPRAV 96 (196)
T ss_pred HHHHHHHHcCCeEEEeCCcccc
Confidence 4678899999999999986543
No 129
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=30.72 E-value=57 Score=23.16 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=19.7
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
++++.+++++..||+|+=+...+.
T Consensus 46 ~~i~~l~~~~~~I~~D~K~~Dig~ 69 (226)
T PF00215_consen 46 EIIEELKERGKPIFLDLKLGDIGN 69 (226)
T ss_dssp HHHHHHHHTTSEEEEEEEE-SSHH
T ss_pred HHHHHHHHhcCCEeeeeeecccch
Confidence 688999999999999998776554
No 130
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=30.67 E-value=38 Score=25.54 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.0
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
+++++|+++|+.|++|.
T Consensus 96 ~i~~~A~~~~v~v~iDa 112 (313)
T PF01619_consen 96 RICERAKEHGVFVLIDA 112 (313)
T ss_dssp HHHHHHHHTTEEEEE--
T ss_pred HHHHHhhcCCcEEEEcC
Confidence 57899999999999998
No 131
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=30.66 E-value=47 Score=23.41 Aligned_cols=16 Identities=31% Similarity=0.111 Sum_probs=13.6
Q ss_pred hhHHHHHHcCCEEEEE
Q psy15652 2 EEEEEDAVTGIKILLD 17 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD 17 (92)
++|+++|++|++|+.=
T Consensus 185 ~~v~~~~~~G~~v~~W 200 (226)
T cd08568 185 ELLRLLRKLGLKIVLW 200 (226)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 5889999999998753
No 132
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=30.57 E-value=59 Score=21.05 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=20.2
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
.++++++++|.+|++-....++|.
T Consensus 114 ~~i~~lr~~G~~V~v~~~~~~~s~ 137 (149)
T cd06167 114 PLVERLRELGKRVIVVGFEAKTSR 137 (149)
T ss_pred HHHHHHHHcCCEEEEEccCccChH
Confidence 478999999999999998866664
No 133
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=30.56 E-value=48 Score=19.87 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=10.8
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+-|+++|++|.+||-
T Consensus 40 ~~I~~L~~~G~~vic 54 (74)
T PF03537_consen 40 EEIARLKAQGKKVIC 54 (74)
T ss_dssp HHHHHHHHTT-EEEE
T ss_pred HHHHHHHHCCCEEEE
Confidence 358899999977764
No 134
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=30.47 E-value=33 Score=23.99 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=7.1
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
.|+.+|+++|++++|
T Consensus 109 nll~~a~~~~ip~~L 123 (186)
T PF04413_consen 109 NLLREAKRRGIPVVL 123 (186)
T ss_dssp HHHHH-----S-EEE
T ss_pred HHHHHHhhcCCCEEE
Confidence 589999999999864
No 135
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=30.45 E-value=43 Score=27.10 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=17.1
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
+||++++++||..|+.+ +|-
T Consensus 116 ~~i~~l~~~gi~p~VtL--~H~ 135 (474)
T PRK09852 116 SVFEECKKYGIEPLVTL--CHF 135 (474)
T ss_pred HHHHHHHHcCCEEEEEe--eCC
Confidence 68999999999999876 454
No 136
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=30.43 E-value=64 Score=24.40 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=32.3
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGK 50 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~~~ 50 (92)
+|.+.|+++|+-+|+|=|.-=.+..-++|---..+-.| |...+.+.-
T Consensus 202 ~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~P--Div~~gK~l 248 (339)
T PF00202_consen 202 ELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDP--DIVTFGKGL 248 (339)
T ss_dssp HHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSS--SEEEEEGGG
T ss_pred ehcccccccccceecccccccccccCCccceecccccC--cccccccch
Confidence 57899999999999999998776666666322223333 777776543
No 137
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=30.41 E-value=47 Score=25.27 Aligned_cols=20 Identities=5% Similarity=0.228 Sum_probs=17.4
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++++-||++|+.||+|..-.
T Consensus 170 ~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 170 DAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred HHHHHHHHcCCeEEEECCCC
Confidence 57889999999999999753
No 138
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=30.39 E-value=63 Score=19.23 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=18.0
Q ss_pred hhHHHHHHcCCEEEEEeccccCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s 24 (92)
++.+.+.+.|+++.+|..-.-.+
T Consensus 20 ~l~~~L~~~gi~v~~d~~~~~~~ 42 (94)
T PF03129_consen 20 ELANKLRKAGIRVELDDSDKSLG 42 (94)
T ss_dssp HHHHHHHHTTSEEEEESSSSTHH
T ss_pred HHHHHHHHCCCEEEEECCCCchh
Confidence 57889999999999998443333
No 139
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=30.15 E-value=53 Score=22.36 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=16.0
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
.+++.+++.|++||++.|=+-
T Consensus 194 ~l~~~~~~~~~~via~gVe~~ 214 (236)
T PF00563_consen 194 SLINLAKSLGIKVIAEGVESE 214 (236)
T ss_dssp HHHHHHHHTT-EEEEECE-SH
T ss_pred HHHHHhhccccccceeecCCH
Confidence 478899999999999987543
No 140
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=29.91 E-value=47 Score=23.39 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=16.4
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+++++++++|++|++|...
T Consensus 129 ~~~~~a~~~g~~v~~D~~~ 147 (264)
T cd01940 129 KALQALVGAGALISFDFSD 147 (264)
T ss_pred HHHHHHHHcCCEEEEcCcc
Confidence 5788999999999999754
No 141
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=29.80 E-value=47 Score=23.93 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.2
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
.+++++|++|+|||+=+-
T Consensus 50 ~~~~~~~~~~~kvl~sig 67 (253)
T cd06545 50 SVVNAAHAHNVKILISLA 67 (253)
T ss_pred HHHHHHHhCCCEEEEEEc
Confidence 468899999999998754
No 142
>PLN02651 cysteine desulfurase
Probab=29.79 E-value=53 Score=24.60 Aligned_cols=19 Identities=16% Similarity=-0.078 Sum_probs=16.9
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++.+.||++|+-+++|.+-
T Consensus 159 ~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 159 EIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred HHHHHHHHcCCEEEEEcch
Confidence 5788999999999999874
No 143
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=29.70 E-value=43 Score=25.09 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.3
Q ss_pred ChhHHHHHHcCCEEEEEe-ccccCCC
Q psy15652 1 MEEEEEDAVTGIKILLDY-VPNHTSD 25 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvilD~-V~NH~s~ 25 (92)
++||+-|.+|||.||-.+ +|-|+..
T Consensus 75 ~elv~yA~~rgI~viPEiD~PGH~~a 100 (303)
T cd02742 75 KDIIEYAAARGIEVIPEIDMPGHSTA 100 (303)
T ss_pred HHHHHHHHHcCCEEEEeccchHHHHH
Confidence 368999999999999776 4788753
No 144
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.61 E-value=52 Score=19.19 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.4
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++.+++.+.|+++.+|.-
T Consensus 19 ~~~~~Lr~~g~~v~~d~~ 36 (91)
T cd00860 19 EVAKKLSDAGIRVEVDLR 36 (91)
T ss_pred HHHHHHHHCCCEEEEECC
Confidence 577888999999999884
No 145
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=29.40 E-value=51 Score=22.60 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=13.5
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
++|+.+|++|+.|+.--
T Consensus 213 ~~v~~~~~~g~~v~~wt 229 (256)
T PF03009_consen 213 RLVQEAHKAGLKVYVWT 229 (256)
T ss_dssp HHHHHHHHTT-EEEEBS
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 48999999999998753
No 146
>KOG4701|consensus
Probab=29.36 E-value=43 Score=27.38 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=14.3
Q ss_pred hHHHHHHcCCEEEEEe
Q psy15652 3 EEEEDAVTGIKILLDY 18 (92)
Q Consensus 3 Lv~~~h~~gmkvilD~ 18 (92)
-|+.|+.+||||||-+
T Consensus 95 di~~CQS~GiKVlLSL 110 (568)
T KOG4701|consen 95 DIQVCQSNGIKVLLSL 110 (568)
T ss_pred HHHHHHhcCeEEEEec
Confidence 4789999999999976
No 147
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=29.20 E-value=84 Score=21.99 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=21.6
Q ss_pred hHHHHHHcCCEEEEEeccccCCCCchhHHHHhcC-CCCCCCcEEE
Q psy15652 3 EEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAG-IAPYDEYYVW 46 (92)
Q Consensus 3 Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~-~s~~~d~f~~ 46 (92)
-|++.-+.|..||+|-|+ ..-+|+++.++. =..+.=+|+.
T Consensus 75 ~iaa~a~aG~~VIvD~v~----~~~~~l~d~l~~~L~~~~vl~Vg 115 (174)
T PF07931_consen 75 AIAAMARAGNNVIVDDVF----LGPRWLQDCLRRLLAGLPVLFVG 115 (174)
T ss_dssp HHHHHHHTT-EEEEEE------TTTHHHHHHHHHHHTTS-EEEEE
T ss_pred HHHHHHhCCCCEEEecCc----cCcHHHHHHHHHHhCCCceEEEE
Confidence 467788899999999443 444565555421 1224445553
No 148
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=29.13 E-value=51 Score=23.91 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=16.4
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
++|+++|++|++|.+ ..+|-
T Consensus 214 ~~v~~~~~~g~~v~~-WTVn~ 233 (252)
T cd08574 214 QEIREYSKANISVNL-YVVNE 233 (252)
T ss_pred HHHHHHHHCCCEEEE-EccCC
Confidence 589999999999977 55554
No 149
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=29.12 E-value=57 Score=24.39 Aligned_cols=43 Identities=12% Similarity=-0.014 Sum_probs=25.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeCCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKG 51 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~~~~ 51 (92)
++.+.||++|.-+++|.+-- .+... +.-+.-..|++++...+.
T Consensus 160 ~I~~~~~~~~~~~~vD~~~~-~g~~~------id~~~~~~D~~~~s~~Kl 202 (371)
T PF00266_consen 160 EIAKLAHEYGALLVVDAAQS-AGCVP------IDLDELGADFLVFSSHKL 202 (371)
T ss_dssp HHHHHHHHTTSEEEEE-TTT-TTTSS--------TTTTTESEEEEESTST
T ss_pred eehhhhhccCCceeEechhc-ccccc------ccccccccceeeeccccc
Confidence 57789999999999999742 22211 011223567787776553
No 150
>KOG2499|consensus
Probab=29.01 E-value=51 Score=27.44 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.2
Q ss_pred hhHHHHHHcCCEEEEEe-ccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDY-VPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~-V~NH~s~ 25 (92)
++|+=|.-||||||-.+ +|-|+++
T Consensus 254 evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 254 EVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred HHHHHHHhccceeeecccCCccccc
Confidence 67899999999999877 6899987
No 151
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=28.99 E-value=47 Score=27.25 Aligned_cols=21 Identities=14% Similarity=-0.062 Sum_probs=17.3
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
+|.+.|+.+||+||-|+.+-=
T Consensus 216 ~l~~yA~~~~I~L~gDlpi~v 236 (513)
T TIGR00217 216 ALKRYANDMGIGLYGDLPVFV 236 (513)
T ss_pred HHHHHHhcCCcEEEEeCccee
Confidence 466778999999999998843
No 152
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=28.92 E-value=60 Score=21.82 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=16.6
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
+.++++.+.|..||+|.++.
T Consensus 76 ~~~~~~l~~G~~VIvD~~~~ 95 (175)
T cd00227 76 EAVAAMARAGANVIADDVFL 95 (175)
T ss_pred HHHHHHHhCCCcEEEeeecc
Confidence 35677888999999999876
No 153
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=28.88 E-value=59 Score=22.21 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.7
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
.+++.|+..|++||.+.|=+.
T Consensus 194 ~l~~~~~~~~~~via~gVe~~ 214 (241)
T smart00052 194 SIIELAQKLGLQVVAEGVETP 214 (241)
T ss_pred HHHHHHHHCCCeEEEecCCCH
Confidence 467889999999999988654
No 154
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=28.73 E-value=48 Score=23.18 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=27.5
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhcCCCCCCCcEEEeC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKE 48 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~~~s~~~d~f~~~~ 48 (92)
-+|+++.++|.++++.-+.+++|.+ +++ -+|.|+-.+
T Consensus 125 p~v~~~~~~G~rv~v~~~~~~~s~~---L~~-------~aD~~i~L~ 161 (181)
T COG1432 125 PLVEAARDKGKRVEVAGIEPMTSSD---LRN-------AADYYIDLK 161 (181)
T ss_pred HHHHHHHHcCCEEEEEecCCcCHHH---HHH-------hhcceEEch
Confidence 3689999999999999999976653 444 335666544
No 155
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=28.65 E-value=55 Score=24.86 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=16.9
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+.||+|-..
T Consensus 146 ~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 146 AIAELAHEHGALLVVDNTF 164 (369)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 5788999999999999974
No 156
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=28.23 E-value=53 Score=24.05 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=17.3
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
++|+++|++|++|+.=-|.|-
T Consensus 249 ~~v~~~~~~Gl~v~~wTv~~n 269 (290)
T cd08607 249 SQIELAKSLGLVVFCWGDDLN 269 (290)
T ss_pred HHHHHHHHcCCEEEEECCCCC
Confidence 689999999999998766543
No 157
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=28.21 E-value=62 Score=23.87 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=15.8
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
+|++.|++.||.+|+|+
T Consensus 151 ~li~~a~~lGl~~lvev 167 (260)
T PRK00278 151 ELLDYAHSLGLDVLVEV 167 (260)
T ss_pred HHHHHHHHcCCeEEEEe
Confidence 68999999999999997
No 158
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.18 E-value=54 Score=23.79 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.8
Q ss_pred hhHHHHHHcCCEEEEE
Q psy15652 2 EEEEEDAVTGIKILLD 17 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD 17 (92)
++|+++|++|++|+.=
T Consensus 214 ~~v~~~~~~Gl~v~~w 229 (265)
T cd08564 214 EFVKKAHENGLKVMTY 229 (265)
T ss_pred HHHHHHHHcCCEEEEe
Confidence 5899999999998754
No 159
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=28.07 E-value=48 Score=24.20 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.3
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
++|+++|++|++|+. .++|-.
T Consensus 222 ~~v~~~~~~G~~v~v-WTVNd~ 242 (264)
T cd08575 222 NLFDHLRKRGIQVYL-WVLNDE 242 (264)
T ss_pred HHHHHHHhcCCcEEE-EEECCH
Confidence 589999999999987 666653
No 160
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=27.92 E-value=55 Score=23.87 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=13.2
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++|+++|++|++|..
T Consensus 219 ~~v~~~~~~G~~v~v 233 (258)
T cd08573 219 AYVRYWRARGIRVIA 233 (258)
T ss_pred HHHHHHHHCCCEEEE
Confidence 589999999999865
No 161
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=27.78 E-value=54 Score=23.99 Aligned_cols=15 Identities=7% Similarity=0.034 Sum_probs=13.6
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++|++||++|++|..
T Consensus 241 ~~v~~~~~~Gl~v~v 255 (282)
T cd08605 241 TAVSLVKASGLELGT 255 (282)
T ss_pred HHHHHHHHcCcEEEE
Confidence 689999999999976
No 162
>PRK07050 cystathionine beta-lyase; Provisional
Probab=27.60 E-value=72 Score=24.71 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=18.3
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
++++.||++|+.||+|-....
T Consensus 171 ~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 171 AITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred HHHHHHHHcCCEEEEECCccc
Confidence 577889999999999999765
No 163
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=27.37 E-value=66 Score=24.15 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.5
Q ss_pred hHHHHHHcCCEEEEEe
Q psy15652 3 EEEEDAVTGIKILLDY 18 (92)
Q Consensus 3 Lv~~~h~~gmkvilD~ 18 (92)
.|++|+++|+||||-+
T Consensus 65 ~i~~~q~~G~KVllSi 80 (312)
T cd02871 65 DIKALQAKGKKVLISI 80 (312)
T ss_pred HHHHHHHCCCEEEEEE
Confidence 4678999999999876
No 164
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=27.12 E-value=65 Score=20.37 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=12.5
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+.++.|+++|+++|.
T Consensus 61 ~~~~~a~~~g~~iI~ 75 (119)
T cd05017 61 SAVEQAKERGAKIVA 75 (119)
T ss_pred HHHHHHHHCCCEEEE
Confidence 568899999999874
No 165
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=26.90 E-value=37 Score=22.20 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=25.3
Q ss_pred hhHHHHHHc-CCEEEEEeccc-cCCC--CchhHHHHhc
Q psy15652 2 EEEEEDAVT-GIKILLDYVPN-HTSD--EHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~-gmkvilD~V~N-H~s~--~h~wf~~a~~ 35 (92)
+|.+.+++. |+.|++|.--- +++. ...|+.+.++
T Consensus 20 ~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~ 57 (150)
T PF08357_consen 20 ALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIR 57 (150)
T ss_pred HHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHh
Confidence 678888999 99999998654 4444 3458887654
No 166
>PRK09028 cystathionine beta-lyase; Provisional
Probab=26.69 E-value=62 Score=25.38 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=17.7
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++++.||++|+-||+|-+.-
T Consensus 167 ~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 167 TLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred HHHHHHHHcCCEEEEECCcc
Confidence 57899999999999998874
No 167
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.64 E-value=41 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=17.8
Q ss_pred hhHHHHHHcCCEEEEEe-ccccCC
Q psy15652 2 EEEEEDAVTGIKILLDY-VPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~-V~NH~s 24 (92)
+||+-|.+|||.||-.+ +|-|+.
T Consensus 86 eiv~yA~~rgI~vIPEID~PGH~~ 109 (326)
T cd06564 86 ELIAYAKDRGVNIIPEIDSPGHSL 109 (326)
T ss_pred HHHHHHHHcCCeEeccCCCcHHHH
Confidence 68899999999998655 366754
No 168
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=26.42 E-value=73 Score=24.08 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=20.0
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
+|++-|+++|+-||+|-|....+.
T Consensus 200 ~l~~l~~~~g~~lI~DEv~~g~g~ 223 (389)
T PRK01278 200 GLRQLCDENGLLLIFDEVQCGMGR 223 (389)
T ss_pred HHHHHHHHcCCEEEEeccccCCCc
Confidence 578899999999999999765443
No 169
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=26.32 E-value=64 Score=21.78 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=12.5
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++++.|+++|++||.
T Consensus 90 ~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 90 TVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHHHHHCCCeEEE
Confidence 567889999999965
No 170
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=26.22 E-value=62 Score=25.96 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=15.9
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.||++|+.||+|..
T Consensus 236 ~I~~la~~~g~~vivD~~ 253 (454)
T TIGR00474 236 ELVALGREHGLPVMEDLG 253 (454)
T ss_pred HHHHHHHHcCCeEEEECC
Confidence 578999999999999953
No 171
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=26.04 E-value=62 Score=23.96 Aligned_cols=21 Identities=10% Similarity=-0.095 Sum_probs=17.9
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
+|++.|+++|+.||+|-+.--
T Consensus 149 ~l~~~a~~~~~~ii~De~y~~ 169 (330)
T TIGR01140 149 ALAARLRARGGWLVVDEAFID 169 (330)
T ss_pred HHHHHhHhcCCEEEEECcccc
Confidence 577889999999999998743
No 172
>PRK05967 cystathionine beta-lyase; Provisional
Probab=26.02 E-value=74 Score=25.03 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=18.0
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++++.||++|+-||+|-++.
T Consensus 170 ~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 170 AIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred HHHHHHHHhCCEEEEECCcc
Confidence 57889999999999999984
No 173
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=26.01 E-value=64 Score=22.87 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=13.2
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++++.||++|++|..
T Consensus 195 ~~v~~~~~~gl~v~~ 209 (234)
T cd08570 195 AFLPELKKNGKKVFV 209 (234)
T ss_pred HHHHHHHHCCCEEEE
Confidence 589999999999865
No 174
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=25.90 E-value=66 Score=23.46 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.2
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.++++|++|++|...
T Consensus 147 ~~~~~a~~~g~~v~~D~~~ 165 (309)
T TIGR01231 147 QIIERCQNKGVPVVLDCSG 165 (309)
T ss_pred HHHHHHHhCCCeEEEECCh
Confidence 5788899999999999753
No 175
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=25.85 E-value=64 Score=25.44 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=26.7
Q ss_pred hhHHHHHHcCCEEEEEecc--ccCCCCchhHHHHhcCCCCCCCcEEEeCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVP--NHTSDEHDWFAKSKAGIAPYDEYYVWKEGK 50 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~--NH~s~~h~wf~~a~~~~s~~~d~f~~~~~~ 50 (92)
++++.||++|..|++|.+- -|.-.+ + ..-..|||.+..-+
T Consensus 183 ~I~~la~~~ga~v~VDaaq~~~h~~id---v------~~l~~Df~afsgHK 224 (405)
T COG0520 183 EIAELAHEHGALVLVDAAQAAGHLPID---V------QELGCDFLAFSGHK 224 (405)
T ss_pred HHHHHHHHcCCEEEEECccccCccCCC---c------hhcCCCEEEEcccc
Confidence 6789999999999999873 121111 1 23367888876554
No 176
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=25.81 E-value=62 Score=24.56 Aligned_cols=17 Identities=6% Similarity=0.087 Sum_probs=14.3
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
++|+.||++||.|+.=-
T Consensus 267 ~~V~~ah~~Gl~V~~wT 283 (318)
T cd08600 267 DLVKDAHEAGLEVHPYT 283 (318)
T ss_pred HHHHHHHHcCCEEEEEe
Confidence 68999999999997643
No 177
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=25.71 E-value=70 Score=19.96 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=12.4
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+.++.|+++|.+||.
T Consensus 64 ~~~~~a~~~g~~vi~ 78 (126)
T cd05008 64 AALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHHHHcCCeEEE
Confidence 568899999999864
No 178
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=25.59 E-value=66 Score=24.69 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=17.0
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+.||+|-.+
T Consensus 157 ~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 157 KVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 5788899999999999985
No 179
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=25.56 E-value=68 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.097 Sum_probs=16.6
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++.+.||++|+.||+|.+-
T Consensus 157 ~I~~l~~~~g~~vivD~~~ 175 (379)
T TIGR03402 157 EIGEIAKERGALFHTDAVQ 175 (379)
T ss_pred HHHHHHHHcCCEEEEECcc
Confidence 4778899999999999875
No 180
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=25.51 E-value=70 Score=23.67 Aligned_cols=18 Identities=17% Similarity=-0.053 Sum_probs=16.3
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.|+++|+.||+|.+
T Consensus 159 ~I~~l~~~~~~~~ivD~a 176 (353)
T TIGR03235 159 EIAEVLEAHEAFFHVDAA 176 (353)
T ss_pred HHHHHHHHcCCEEEEEch
Confidence 578889999999999997
No 181
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=25.49 E-value=64 Score=24.24 Aligned_cols=15 Identities=7% Similarity=0.124 Sum_probs=13.3
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++|++||++|++|..
T Consensus 241 ~~v~~a~~~Gl~v~v 255 (300)
T cd08604 241 NVVEKLQSANLTVYV 255 (300)
T ss_pred HHHHHHHHCCCEEEE
Confidence 589999999999865
No 182
>PRK11440 putative hydrolase; Provisional
Probab=25.44 E-value=61 Score=22.20 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=13.5
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+|+++++++|+.||.
T Consensus 39 ~l~~~ar~~g~pVi~ 53 (188)
T PRK11440 39 RLAAKFRASGSPVVL 53 (188)
T ss_pred HHHHHHHHcCCcEEE
Confidence 689999999999984
No 183
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=25.41 E-value=66 Score=23.41 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.0
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++|++||++|+++.+=.|++
T Consensus 189 ~~v~~a~~~Gl~vr~Wtv~~ 208 (228)
T cd08577 189 SIIDKAHARGKKVRFWGTPD 208 (228)
T ss_pred HHHHHHHHCCCEEEEEccCC
Confidence 57899999999998876666
No 184
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=25.33 E-value=64 Score=23.88 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=15.4
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.+|++|+|||+=+.
T Consensus 49 ~~~~~a~~~~~kv~~~i~ 66 (313)
T cd02874 49 RLIEAAKRRGVKPLLVIT 66 (313)
T ss_pred HHHHHHHHCCCeEEEEEe
Confidence 578999999999998764
No 185
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=25.32 E-value=57 Score=21.71 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=13.6
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+|+++++++|+.||.
T Consensus 27 ~l~~~ar~~g~pVi~ 41 (157)
T cd01012 27 KLAKAAKLLDVPVIL 41 (157)
T ss_pred HHHHHHHhcCCCEEE
Confidence 689999999999986
No 186
>PRK11142 ribokinase; Provisional
Probab=25.09 E-value=72 Score=23.00 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=15.5
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.|+++|++|++|.-
T Consensus 149 ~~~~~a~~~g~~v~~d~~ 166 (306)
T PRK11142 149 AAAKIAKQHGTKVILNPA 166 (306)
T ss_pred HHHHHHHHcCCEEEEECC
Confidence 578889999999999963
No 187
>COG5483 Uncharacterized conserved protein [Function unknown]
Probab=25.04 E-value=85 Score=23.89 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=23.1
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAK 32 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~ 32 (92)
..++.+|+-|-+||+|.--= -+++|+|+..
T Consensus 15 ~~~d~l~~lgsrvmIdvrrf-prSqta~~s~ 44 (289)
T COG5483 15 YTIDKLHELGSRVMIDVRRF-PRSQTAVESI 44 (289)
T ss_pred HHHHHHHhhCceEEEEEeec-cccccchhhH
Confidence 46889999999999997543 4445888743
No 188
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.95 E-value=67 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=18.6
Q ss_pred hhHHHHHHcCCEEEEEe-ccccCC
Q psy15652 2 EEEEEDAVTGIKILLDY-VPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~-V~NH~s 24 (92)
+||+-|.+|||.||-.+ +|-|+.
T Consensus 79 elv~yA~~rgI~vIPEiD~PGH~~ 102 (329)
T cd06568 79 DIVAYAAERHITVVPEIDMPGHTN 102 (329)
T ss_pred HHHHHHHHcCCEEEEecCCcHHHH
Confidence 68999999999999766 356754
No 189
>PRK05939 hypothetical protein; Provisional
Probab=24.86 E-value=72 Score=24.83 Aligned_cols=19 Identities=11% Similarity=-0.031 Sum_probs=16.8
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+.||+|-+.
T Consensus 152 ~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 152 GIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHHHHHHcCCEEEEECCc
Confidence 5788899999999999875
No 190
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=24.86 E-value=69 Score=22.73 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=13.8
Q ss_pred hhHHHHHHcCCEEEEE
Q psy15652 2 EEEEEDAVTGIKILLD 17 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD 17 (92)
++|+.+|++|++|+.=
T Consensus 196 ~~v~~~~~~Gl~v~vw 211 (237)
T cd08583 196 KLIEKLNKAGIYVYVY 211 (237)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 5899999999998764
No 191
>PLN02721 threonine aldolase
Probab=24.75 E-value=74 Score=23.24 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=16.5
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+|++.|+++|+.||+|-..
T Consensus 162 ~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 162 KVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred HHHHHHHHcCCEEEEEchh
Confidence 6788899999999999853
No 192
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=24.66 E-value=44 Score=26.81 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=14.9
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.||++|+.|++|--
T Consensus 188 ~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 188 EIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp HHHHHHCCTECEEEEE-T
T ss_pred HHHHHhcccCCEEEEEcc
Confidence 478899999999999974
No 193
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=24.65 E-value=81 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.5
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.+|++|++|+.-.|
T Consensus 151 ~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 151 ELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred HHHHHHHHcCCEEEEEcC
Confidence 579999999999998654
No 194
>PRK09936 hypothetical protein; Provisional
Probab=24.65 E-value=66 Score=24.86 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=17.2
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
+++++|++.||+|++=+-+.
T Consensus 76 ~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 76 KRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHcCCEEEEcccCC
Confidence 46899999999999988764
No 195
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.63 E-value=59 Score=24.98 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.1
Q ss_pred hhHHHHHHcCCEEEEEe-ccccCC
Q psy15652 2 EEEEEDAVTGIKILLDY-VPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~-V~NH~s 24 (92)
+||+-|++|||.||-.+ +|-|+.
T Consensus 90 eiv~yA~~rgI~VIPEID~PGH~~ 113 (357)
T cd06563 90 EIVAYAAERGITVIPEIDMPGHAL 113 (357)
T ss_pred HHHHHHHHcCCEEEEecCCchhHH
Confidence 68999999999999776 467764
No 196
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=24.48 E-value=75 Score=25.71 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=15.8
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
+||+++.++||+.|+.+
T Consensus 114 ~lid~l~~~GI~P~vTL 130 (477)
T PRK15014 114 DMFDELLKYNIEPVITL 130 (477)
T ss_pred HHHHHHHHcCCEEEEEe
Confidence 68999999999999876
No 197
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=24.47 E-value=75 Score=23.61 Aligned_cols=19 Identities=11% Similarity=0.080 Sum_probs=16.7
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|.-||+|.+-
T Consensus 150 ~I~~l~~~~g~~livD~~~ 168 (363)
T TIGR02326 150 AVAKLAHRHGKVTIVDAMS 168 (363)
T ss_pred HHHHHHHHcCCEEEEEccc
Confidence 5789999999999999863
No 198
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=24.45 E-value=71 Score=21.87 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.9
Q ss_pred hHHHHHHcCCEEEEE
Q psy15652 3 EEEEDAVTGIKILLD 17 (92)
Q Consensus 3 Lv~~~h~~gmkvilD 17 (92)
+-+...++||+|++|
T Consensus 27 ~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 27 FKKEMGKRGIKVKID 41 (132)
T ss_pred HHHHHHhCCcEEEEC
Confidence 556788999999998
No 199
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=24.28 E-value=1.2e+02 Score=23.53 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=21.6
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
..+++||++|++|+-=+.+...+ .-.++.+.++
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~-~~~~~~~lL~ 82 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTG-QVEWLEDFLK 82 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCC-chHHHHHHhc
Confidence 46899999999998866655432 2235544443
No 200
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=24.26 E-value=46 Score=24.06 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=14.0
Q ss_pred ChhHHHHHHcCCEEEE
Q psy15652 1 MEEEEEDAVTGIKILL 16 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvil 16 (92)
++|++.++++|.+|++
T Consensus 121 ~~l~~~~~~~G~~V~~ 136 (229)
T PF03767_consen 121 LELYNYARSRGVKVFF 136 (229)
T ss_dssp HHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHCCCeEEE
Confidence 3689999999999975
No 201
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=24.19 E-value=64 Score=22.99 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=16.3
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.++++|.+|++|...
T Consensus 146 ~~~~~a~~~g~~v~~D~~~ 164 (292)
T cd01174 146 AALRAARRAGVTVILNPAP 164 (292)
T ss_pred HHHHHHHhcCCEEEEeCCC
Confidence 4788999999999999754
No 202
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=24.18 E-value=72 Score=22.44 Aligned_cols=15 Identities=40% Similarity=0.348 Sum_probs=13.2
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++|+.+|++|++|+.
T Consensus 191 ~~i~~~~~~g~~v~~ 205 (230)
T cd08563 191 EVVEELKKRGIPVRL 205 (230)
T ss_pred HHHHHHHHCCCEEEE
Confidence 589999999999874
No 203
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.02 E-value=83 Score=19.48 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=11.4
Q ss_pred hhHHHHHHcCCEE
Q psy15652 2 EEEEEDAVTGIKI 14 (92)
Q Consensus 2 ~Lv~~~h~~gmkv 14 (92)
++++.|+++|.+|
T Consensus 71 ~~~~~ak~~g~~v 83 (131)
T PF01380_consen 71 ELLRFAKERGAPV 83 (131)
T ss_dssp HHHHHHHHTTSEE
T ss_pred hhhHHHHhcCCeE
Confidence 5678999999999
No 204
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=24.00 E-value=64 Score=23.42 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=15.6
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
+|++.|+++|+-||+|-.
T Consensus 150 ~i~~~~~~~~~~livDea 167 (338)
T cd06502 150 AISALAKENGLPLHLDGA 167 (338)
T ss_pred HHHHHHHHcCCeEeechH
Confidence 578899999999999963
No 205
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=23.76 E-value=95 Score=23.78 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=24.8
Q ss_pred hhHHHHHHcCCE-EEEEeccccCCCCchhHHHHh
Q psy15652 2 EEEEEDAVTGIK-ILLDYVPNHTSDEHDWFAKSK 34 (92)
Q Consensus 2 ~Lv~~~h~~gmk-vilD~V~NH~s~~h~wf~~a~ 34 (92)
+.++.+++.|++ |.+|++++.-+..-.=|++.+
T Consensus 148 ~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl 181 (375)
T PRK05628 148 AAAREARAAGFEHVNLDLIYGTPGESDDDWRASL 181 (375)
T ss_pred HHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHH
Confidence 457788999999 999999988766555454544
No 206
>PRK07568 aspartate aminotransferase; Provisional
Probab=23.71 E-value=76 Score=23.86 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=19.0
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
++++.|+++|+-||.|-+....
T Consensus 186 ~i~~~~~~~~~~ii~De~y~~~ 207 (397)
T PRK07568 186 MLAEIAKKHDLFLISDEVYREF 207 (397)
T ss_pred HHHHHHHHCCcEEEEeccchhc
Confidence 5788999999999999988654
No 207
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=23.63 E-value=72 Score=23.33 Aligned_cols=19 Identities=11% Similarity=-0.146 Sum_probs=15.8
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++|+.+|++|++|+.=-|-
T Consensus 236 ~~v~~~~~~Gl~v~~WTv~ 254 (286)
T cd08606 236 RLIQVVKRSGLVCVSYGVL 254 (286)
T ss_pred HHHHHHHHCCcEEEEECCc
Confidence 5899999999999875553
No 208
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=23.55 E-value=80 Score=22.71 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.7
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+|.+++.++||+||.|=..
T Consensus 38 ~L~~~Le~~Gi~vihd~t~ 56 (196)
T TIGR02867 38 RLAKELEEKGIGVIHDKTV 56 (196)
T ss_pred HHHHHHHHCCCeEEEeCCc
Confidence 5788999999999999873
No 209
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.29 E-value=79 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=16.8
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++.+.||++|+.||+|-..
T Consensus 170 ~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 170 TVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 5788999999999999874
No 210
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=23.21 E-value=80 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.7
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.++++|++|++|..
T Consensus 151 ~~~~~a~~~g~~v~~D~~ 168 (309)
T PRK10294 151 QLISAAQKQGIRCIIDSS 168 (309)
T ss_pred HHHHHHHHcCCeEEEeCC
Confidence 578889999999999974
No 211
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=23.15 E-value=77 Score=27.08 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=16.0
Q ss_pred hhHHHHHHcCC--EEEEEecc
Q psy15652 2 EEEEEDAVTGI--KILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gm--kvilD~V~ 20 (92)
++.+.|+++|| +||-|+.+
T Consensus 359 ~~~~~A~~~Gm~igL~gDLpv 379 (695)
T PRK11052 359 ACWQLSQQLGMPIGLYRDLAV 379 (695)
T ss_pred HHHHHHHHCCCceeEEEeeec
Confidence 45678999999 68999987
No 212
>PLN02323 probable fructokinase
Probab=23.11 E-value=61 Score=23.92 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=15.6
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
+++++++++|++|++|.-
T Consensus 158 ~~~~~a~~~g~~v~~D~~ 175 (330)
T PLN02323 158 AAMKIAKEAGALLSYDPN 175 (330)
T ss_pred HHHHHHHHcCCEEEEcCC
Confidence 468899999999999974
No 213
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=23.05 E-value=65 Score=23.12 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=12.0
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+-+++|+++||.+|-
T Consensus 127 ~Ai~~Ak~~gm~vI~ 141 (176)
T COG0279 127 KAIEAAKEKGMTVIA 141 (176)
T ss_pred HHHHHHHHcCCEEEE
Confidence 347899999999863
No 214
>PRK05968 hypothetical protein; Provisional
Probab=23.04 E-value=80 Score=24.35 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=16.6
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+.||+|-..
T Consensus 168 ~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 168 ALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 5788899999999999964
No 215
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.00 E-value=77 Score=22.71 Aligned_cols=16 Identities=6% Similarity=-0.275 Sum_probs=13.4
Q ss_pred hhHHHHHHcCCEEEEE
Q psy15652 2 EEEEEDAVTGIKILLD 17 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD 17 (92)
++|+.+|++|++|..=
T Consensus 209 ~~v~~~~~~g~~v~~w 224 (256)
T cd08601 209 WMVHLIHKKGLLVHPY 224 (256)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 5799999999998653
No 216
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=22.85 E-value=68 Score=24.50 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=16.2
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
.|++.|+++|..+|+|.+
T Consensus 104 ~l~~~a~~~Gyd~V~dGt 121 (269)
T COG1606 104 TLVEEAEKRGYDVVADGT 121 (269)
T ss_pred HHHHHHHHcCCCEEEeCC
Confidence 478999999999999985
No 217
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=22.81 E-value=69 Score=21.14 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=14.9
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+|+++++++|+.||.=-..
T Consensus 31 ~l~~~~r~~~~~Vi~~~~~ 49 (174)
T PF00857_consen 31 RLLDAARAAGVPVIHTRDI 49 (174)
T ss_dssp HHHHHHHHTTEEEEEEEES
T ss_pred HHHHHHHHhCCCeEEEEee
Confidence 6899999999988764433
No 218
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=22.78 E-value=1e+02 Score=25.06 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=25.9
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF 30 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf 30 (92)
+|.+-|+++||-+|.|=|..=+++.-.||
T Consensus 247 ~l~~~~~~~gillI~DEVQtG~GRTG~~f 275 (447)
T COG0160 247 ALRKLCREHGILLIADEVQTGFGRTGKMF 275 (447)
T ss_pred HHHHHHHHcCCEEEEeccccCCCccccch
Confidence 57889999999999999999998877776
No 219
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.69 E-value=82 Score=24.19 Aligned_cols=19 Identities=11% Similarity=0.080 Sum_probs=16.8
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+.||+|-..
T Consensus 152 ~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 152 KISEMAHAQNALVVVDNTM 170 (378)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 5788999999999999974
No 220
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=22.59 E-value=57 Score=20.73 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=18.6
Q ss_pred HHHHHHcCCEEEEEeccccCCC
Q psy15652 4 EEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 4 v~~~h~~gmkvilD~V~NH~s~ 25 (92)
.+.+++|||.++=|++.|=-+.
T Consensus 41 ~~~L~~rGi~~~PD~~~NaGGv 62 (102)
T smart00839 41 DDILEDRGVLYAPDFAANAGGV 62 (102)
T ss_pred HHHHHHCCCEEcCcceecCCCE
Confidence 4678999999999999998654
No 221
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=22.57 E-value=85 Score=22.81 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=17.1
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+|++.|+++|+-||+|-+.
T Consensus 167 ~i~~l~~~~~~~li~De~~ 185 (360)
T TIGR00858 167 QLVALAERYGAWLMVDDAH 185 (360)
T ss_pred HHHHHHHHcCcEEEEECcc
Confidence 5788999999999999985
No 222
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=22.56 E-value=1.1e+02 Score=22.64 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=19.0
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
..+++||+.|..+++|+.=|..
T Consensus 97 ~~i~~A~~~~~~v~iDl~~~~~ 118 (217)
T COG0269 97 KAIKVAKEYGKEVQIDLIGVWD 118 (217)
T ss_pred HHHHHHHHcCCeEEEEeecCCC
Confidence 4688999999999999987764
No 223
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=22.51 E-value=67 Score=23.67 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=13.1
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+|++.++++|++|++
T Consensus 127 ~l~~~l~~~G~~Vf~ 141 (229)
T TIGR01675 127 KLYQKIIELGIKIFL 141 (229)
T ss_pred HHHHHHHHCCCEEEE
Confidence 688999999999865
No 224
>PRK14012 cysteine desulfurase; Provisional
Probab=22.46 E-value=85 Score=23.89 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=16.5
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++.+.||++|+.||+|.+-
T Consensus 165 ~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 165 AIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred HHHHHHHHcCCEEEEEcch
Confidence 5678899999999999974
No 225
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=22.45 E-value=78 Score=23.89 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=14.0
Q ss_pred hhHHHHHHcCCEEEEE
Q psy15652 2 EEEEEDAVTGIKILLD 17 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD 17 (92)
++|++||++|++|+.=
T Consensus 257 ~~v~~a~~~gl~v~~w 272 (309)
T cd08602 257 DLVEDAHAAGLQVHPY 272 (309)
T ss_pred HHHHHHHHcCCEEEEE
Confidence 6899999999998764
No 226
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=22.35 E-value=70 Score=24.55 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.3
Q ss_pred hhHHHHHHcCCEEEEEe-ccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDY-VPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~-V~NH~s~ 25 (92)
+||+-|.+|||.||-.+ +|.|+..
T Consensus 74 eiv~yA~~rgI~vIPEID~PGH~~a 98 (348)
T cd06562 74 EIVEYARLRGIRVIPEIDTPGHTGS 98 (348)
T ss_pred HHHHHHHHcCCEEEEeccCchhhHH
Confidence 68999999999999776 5788764
No 227
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.34 E-value=84 Score=17.78 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=15.3
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++++++.|+++.+|...
T Consensus 19 ~i~~~Lr~~g~~v~~~~~~ 37 (91)
T cd00859 19 ELAEQLRDAGIKAEIDYGG 37 (91)
T ss_pred HHHHHHHHCCCEEEEecCC
Confidence 5778899999999887743
No 228
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=22.28 E-value=86 Score=22.28 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.0
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
+.+++++++|..|++|+=++-.+.
T Consensus 40 ~~i~~l~~~~~~i~~DlK~~DIg~ 63 (216)
T cd04725 40 EIVKELRELGFLVFLDLKLGDIPN 63 (216)
T ss_pred HHHHHHHHCCCcEEEEeecCchHH
Confidence 578899999999999998766553
No 229
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=22.26 E-value=86 Score=22.87 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.6
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.|+++|+.|++|..
T Consensus 147 ~~~~~a~~~g~~v~~D~~ 164 (309)
T PRK13508 147 QLIELANQAGKPVVLDCS 164 (309)
T ss_pred HHHHHHHHCCCEEEEECC
Confidence 477899999999999974
No 230
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.22 E-value=1.7e+02 Score=23.32 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=29.3
Q ss_pred hhHHHHHHc--CCEEEEEeccccCCCCchhHHHHhc
Q psy15652 2 EEEEEDAVT--GIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 2 ~Lv~~~h~~--gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
++++.++++ ||.|..|+++.+-+....-|++.++
T Consensus 297 ~~v~~ir~~~pgi~i~~d~IvGfPgET~edf~~Tl~ 332 (455)
T PRK14335 297 SLVGKLKASIPNVALSTDILIGFPGETEEDFEQTLD 332 (455)
T ss_pred HHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 578889998 9999999999999888777877664
No 231
>PRK07582 cystathionine gamma-lyase; Validated
Probab=22.16 E-value=85 Score=23.96 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=17.0
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+.||+|-+.
T Consensus 153 ~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 153 ALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 5788999999999999975
No 232
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=22.14 E-value=85 Score=24.24 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=16.9
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+.||+|-..
T Consensus 158 ~I~~la~~~gi~livD~t~ 176 (385)
T PRK08574 158 EVAKAAKELGAILVVDNTF 176 (385)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 5788899999999999985
No 233
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=22.13 E-value=88 Score=23.83 Aligned_cols=19 Identities=11% Similarity=-0.111 Sum_probs=16.9
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++.+.||++|+.|++|.+-
T Consensus 163 ~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 163 AIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred HHHHHHHHcCCEEEEEcch
Confidence 5788899999999999984
No 234
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=22.12 E-value=79 Score=24.54 Aligned_cols=17 Identities=6% Similarity=-0.148 Sum_probs=14.4
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
++|++||++|++|+.=-
T Consensus 294 ~~v~~ah~~Gl~V~~WT 310 (355)
T PRK11143 294 GMVKEAHQAKLVVHPYT 310 (355)
T ss_pred HHHHHHHHcCCEEEEEE
Confidence 68999999999997643
No 235
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=22.11 E-value=65 Score=24.29 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.8
Q ss_pred hhHHHHHHcCCEEEEEeccccCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s 24 (92)
++|++++++|+.|-.+..|.|..
T Consensus 161 e~i~~ak~~g~~vt~ev~ph~L~ 183 (337)
T cd01302 161 ELIKFAKNKGVKVTCEVCPHHLF 183 (337)
T ss_pred HHHHHHHHCCCcEEEEcChhhhe
Confidence 68899999999999999999864
No 236
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=22.08 E-value=1.4e+02 Score=24.30 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=33.7
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCch----hHHHHhcCCCCCCCcEEEeCCCCcCCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHD----WFAKSKAGIAPYDEYYVWKEGKGVWIPG 56 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~----wf~~a~~~~s~~~d~f~~~~~~~~~~~g 56 (92)
+|++.|+++|..||+.. |-|+--.+- -.++.+ ...+-||+.-+-.+|.-+|
T Consensus 247 eL~~rA~e~gVQvMVEG-PGHvPl~~I~~nv~lqK~l---c~~APfYvLGPLvTDiApG 301 (423)
T TIGR00190 247 ELVERAREADVQCMVEG-PGHVPLDQIEANVRLQKEL---CDEAPFYVLGPLVTDIAPG 301 (423)
T ss_pred HHHHHHHHcCCeEEEEC-CCCCcHHHHHHHHHHHHHh---hCCCCeeecCCcccccCCC
Confidence 68999999999999998 588853321 122222 2234488888777764444
No 237
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=22.07 E-value=91 Score=22.61 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=18.0
Q ss_pred hhHHHHHHc--CCEEEEEeccccCC
Q psy15652 2 EEEEEDAVT--GIKILLDYVPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~--gmkvilD~V~NH~s 24 (92)
++|++++++ |.+|++|+=+.-..
T Consensus 45 ~~i~~lk~~~~~~~IflDlKl~DIp 69 (218)
T PRK13305 45 GAVKALREQCPDKIIVADWKVADAG 69 (218)
T ss_pred HHHHHHHHhCCCCEEEEEeecccCh
Confidence 468899999 99999998665443
No 238
>PRK05764 aspartate aminotransferase; Provisional
Probab=21.97 E-value=84 Score=23.59 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=18.0
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
+|++.|+++|+-||+|-+...
T Consensus 188 ~l~~~a~~~~~~ii~De~y~~ 208 (393)
T PRK05764 188 AIADVAVEHDIWVLSDEIYEK 208 (393)
T ss_pred HHHHHHHHCCcEEEEeccccc
Confidence 578999999999999977644
No 239
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.94 E-value=92 Score=19.77 Aligned_cols=15 Identities=7% Similarity=0.051 Sum_probs=12.7
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+.++.|+++|+++|.
T Consensus 65 ~~~~~a~~~g~~vi~ 79 (120)
T cd05710 65 AAAKFAKEKGATVIG 79 (120)
T ss_pred HHHHHHHHcCCeEEE
Confidence 567889999999876
No 240
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=21.92 E-value=82 Score=24.11 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=15.7
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
++|+++|++|++|.. .++|.
T Consensus 236 ~~v~~a~~~Gl~V~v-WTVNd 255 (316)
T cd08610 236 NDIRDYKAANIHTNV-YVINE 255 (316)
T ss_pred HHHHHHHHCCCEEEE-ECCCC
Confidence 589999999999854 45555
No 241
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=21.89 E-value=89 Score=23.38 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=17.1
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.|+++|+.||+|-+.
T Consensus 191 ~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 191 EICDLADKYDALVMVDECH 209 (393)
T ss_pred HHHHHHHHcCCEEEEECCc
Confidence 5788999999999999994
No 242
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=21.86 E-value=79 Score=22.63 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.1
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.++++|++|++|...
T Consensus 141 ~~~~~~~~~~~~v~~D~~~ 159 (293)
T TIGR02152 141 EAAKIAKKHGVKVILNPAP 159 (293)
T ss_pred HHHHHHHHcCCEEEEECCc
Confidence 5788899999999999754
No 243
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=21.85 E-value=84 Score=23.73 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=16.8
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+.||+|.+-
T Consensus 178 ~i~~~~~~~~~~~ivD~a~ 196 (398)
T TIGR03392 178 RAITLAHQYGAVVVVDGAQ 196 (398)
T ss_pred HHHHHHHHcCCEEEEEhhh
Confidence 4678899999999999986
No 244
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.80 E-value=95 Score=23.14 Aligned_cols=20 Identities=10% Similarity=-0.127 Sum_probs=17.7
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
+||+++|++|+.|+.=-|.|
T Consensus 252 ~~v~~~~~~Gl~v~~wTv~~ 271 (293)
T cd08572 252 SLISLVKALGLVLFTYGDDN 271 (293)
T ss_pred HHHHHHHHcCcEEEEECCCC
Confidence 68999999999999988865
No 245
>PRK08960 hypothetical protein; Provisional
Probab=21.71 E-value=98 Score=23.36 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=18.9
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
+|++.|+++|+-||+|-+..+.
T Consensus 189 ~l~~~~~~~~~~li~De~Y~~~ 210 (387)
T PRK08960 189 ALSQALRARGGHLVVDEIYHGL 210 (387)
T ss_pred HHHHHHHHcCCEEEEEcccccc
Confidence 5788899999999999987654
No 246
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=21.66 E-value=88 Score=23.08 Aligned_cols=19 Identities=21% Similarity=0.087 Sum_probs=17.4
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+|++.|+++|+-||+|-+.
T Consensus 189 ~i~~ia~~~~~~li~De~~ 207 (385)
T PRK05958 189 ELVALARRHGAWLLVDEAH 207 (385)
T ss_pred HHHHHHHHhCCEEEEECcc
Confidence 5788999999999999996
No 247
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.59 E-value=89 Score=21.14 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.6
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++++.|+++|++||.
T Consensus 93 ~~~~~ak~~g~~iI~ 107 (179)
T cd05005 93 NAAEKAKKAGAKVVL 107 (179)
T ss_pred HHHHHHHHCCCeEEE
Confidence 578899999999864
No 248
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=21.58 E-value=91 Score=22.73 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=17.0
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++++.|+++|+-||.|.+-.
T Consensus 124 ~i~~l~~~~~i~li~D~a~~ 143 (352)
T cd00616 124 AIMAIAKRHGLPVIEDAAQA 143 (352)
T ss_pred HHHHHHHHcCCeEEEECCCC
Confidence 57788999999999999743
No 249
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.52 E-value=90 Score=24.89 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=21.5
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHh
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSK 34 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~ 34 (92)
++++.||++|+.||.|-++. -|.+++.+
T Consensus 168 ~I~~iA~~~gi~livD~T~~-----tP~~~~pl 195 (432)
T PRK06702 168 EFSDAAKELEVPFIVDNTLA-----TPYLCQAF 195 (432)
T ss_pred HHHHHHHHcCCEEEEECCCC-----chhhCChh
Confidence 57889999999999999873 35555533
No 250
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=21.51 E-value=1.2e+02 Score=22.97 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=22.4
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF 30 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf 30 (92)
+|++-|+++|+-||+|-|.-..+....+|
T Consensus 212 ~l~~l~~~~gi~lI~DEv~~g~g~~g~~~ 240 (401)
T PRK00854 212 RVRELCTANNVTLILDEIQTGLGRTGKLL 240 (401)
T ss_pred HHHHHHHHcCCEEEEechhhCCCCCchHh
Confidence 57788999999999999987665543344
No 251
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=21.46 E-value=91 Score=23.56 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=16.9
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+-|++|.+-
T Consensus 181 ~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 181 RAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred HHHHHHHHcCCEEEEECCc
Confidence 5778899999999999985
No 252
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=21.46 E-value=99 Score=19.89 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=12.9
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+.+++|++.|++.|+
T Consensus 16 r~~ra~r~~Gi~tv~ 30 (110)
T PF00289_consen 16 RIIRALRELGIETVA 30 (110)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCccee
Confidence 578999999999865
No 253
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=21.41 E-value=85 Score=23.36 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=13.1
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
++|+++|++|++|..
T Consensus 252 ~~v~~~~~~G~~v~v 266 (300)
T cd08612 252 SLFRHLQKRGIQVYG 266 (300)
T ss_pred HHHHHHHHCCCEEEE
Confidence 589999999999864
No 254
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=21.39 E-value=1.2e+02 Score=23.05 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=22.6
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF 30 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf 30 (92)
+|++-|+++|+-||+|-|....+....+|
T Consensus 211 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~ 239 (396)
T PRK04073 211 AARELCKEENVLFIADEIQTGLGRTGKLF 239 (396)
T ss_pred HHHHHHHHcCCEEEEecchhCCCcCcHHH
Confidence 57788999999999999988666544333
No 255
>KOG1065|consensus
Probab=21.37 E-value=76 Score=27.78 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.1
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
.+++.+|++|||+|+=+-|+
T Consensus 355 ~fv~~Lh~~G~kyvliidP~ 374 (805)
T KOG1065|consen 355 DFVDDLHARGFKYVLIIDPF 374 (805)
T ss_pred HHHHHHHhCCCeEEEEeCCc
Confidence 57999999999988755544
No 256
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.29 E-value=81 Score=22.80 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=15.8
Q ss_pred ChhHHHHHHcCCEEEEEec
Q psy15652 1 MEEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 1 ~~Lv~~~h~~gmkvilD~V 19 (92)
++||++|+++|.-|+|-+.
T Consensus 84 ~~~ik~Ak~~Gf~I~L~y~ 102 (187)
T COG4185 84 LELIKTAKAAGFYIVLNYI 102 (187)
T ss_pred HHHHHHHHhCCeEEEEEEE
Confidence 3789999999999987653
No 257
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.05 E-value=95 Score=23.97 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.9
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
++++.||++|+.||+|-+.-.
T Consensus 156 ~I~~la~~~g~~livD~t~a~ 176 (377)
T TIGR01324 156 AIAKAARNPGIVIMIDNTWAA 176 (377)
T ss_pred HHHHHHHHcCCEEEEECCCcc
Confidence 578889999999999998643
No 258
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.02 E-value=91 Score=24.78 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=16.7
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+.||+|-..
T Consensus 176 ~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 176 GVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 5788999999999999964
No 259
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=20.96 E-value=89 Score=23.44 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=16.0
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.||++|+.||+|.+
T Consensus 177 ~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 177 AITELVHAAGALVVVDAV 194 (397)
T ss_pred HHHHHHHHcCCEEEEehh
Confidence 577889999999999996
No 260
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=20.96 E-value=1.2e+02 Score=19.90 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHcCCEEEEEeccccCCCCchh
Q psy15652 4 EEEDAVTGIKILLDYVPNHTSDEHDW 29 (92)
Q Consensus 4 v~~~h~~gmkvilD~V~NH~s~~h~w 29 (92)
++.+.+.|++.|+|+=...-....|-
T Consensus 20 ~~~L~~~GiktVIdlR~~~E~~~~p~ 45 (135)
T TIGR01244 20 AAQAAQLGFKTVINNRPDREEESQPD 45 (135)
T ss_pred HHHHHHCCCcEEEECCCCCCCCCCCC
Confidence 56788899999999988765555453
No 261
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=20.95 E-value=68 Score=24.50 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=20.1
Q ss_pred hHHHHHHcCCEEEEEeccccCCCCchhHHHHhc
Q psy15652 3 EEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA 35 (92)
Q Consensus 3 Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~ 35 (92)
.|++||++|.+|+==+.+.+-+ ...|+.+.++
T Consensus 47 widaAHrnGV~vLGTiife~~~-~~~~~~~ll~ 78 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWGG-GAEWCEELLE 78 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE---HHHHHHHT-
T ss_pred hHHHHHhcCceEEEEEEecCCc-hHHHHHHHHc
Confidence 6899999999998777664432 3457776665
No 262
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=20.94 E-value=67 Score=22.84 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.1
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.++++|.++++|+-+
T Consensus 142 ~~~~~~~~~g~~v~~~~~~ 160 (284)
T cd01945 142 HLAQEARARGIPIPLDLDG 160 (284)
T ss_pred HHHHHHHHcCCCeeEeccC
Confidence 5789999999999998744
No 263
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=20.93 E-value=47 Score=19.93 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=8.9
Q ss_pred HHHcCCEEEE
Q psy15652 7 DAVTGIKILL 16 (92)
Q Consensus 7 ~h~~gmkvil 16 (92)
.|-+||||.|
T Consensus 41 ~Hp~GIKVrL 50 (62)
T TIGR03833 41 THPHGIKVRL 50 (62)
T ss_pred CCCCceEEEE
Confidence 5889999998
No 264
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=20.89 E-value=78 Score=23.12 Aligned_cols=18 Identities=11% Similarity=-0.102 Sum_probs=15.4
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
+++++++++|.+|++|..
T Consensus 152 ~~~~~a~~~g~~v~~D~~ 169 (312)
T PRK09513 152 DWMTRLRSQCPCIIFDSS 169 (312)
T ss_pred HHHHHHHhcCCEEEEECC
Confidence 467889999999999974
No 265
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=20.89 E-value=71 Score=24.47 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=12.3
Q ss_pred hhHHHHHHcCCEEE
Q psy15652 2 EEEEEDAVTGIKIL 15 (92)
Q Consensus 2 ~Lv~~~h~~gmkvi 15 (92)
.||+.||+.||.|-
T Consensus 239 ~lV~~Ah~agL~Vh 252 (299)
T cd08603 239 SLVQDAHKAGLEVY 252 (299)
T ss_pred HHHHHHHHcCCeEE
Confidence 48999999999884
No 266
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=20.87 E-value=90 Score=22.25 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=16.5
Q ss_pred hhHHHHHHcCCEEEEEeccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPN 21 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~N 21 (92)
++++.++++|.+|++|....
T Consensus 142 ~~~~~~~~~g~~v~~d~~~~ 161 (295)
T cd01167 142 ELLEAAKKAGVLISFDPNLR 161 (295)
T ss_pred HHHHHHHHcCCEEEEcCCCC
Confidence 46788999999999998743
No 267
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=20.81 E-value=97 Score=21.92 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=15.9
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.++++|++|++|...
T Consensus 127 ~~~~~~~~~~~~v~~D~~~ 145 (260)
T PRK09813 127 DAFPQLHAAGKLTAFDFSD 145 (260)
T ss_pred HHHHHHHHcCCeEEEEcCC
Confidence 4678889999999999853
No 268
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=20.80 E-value=98 Score=20.21 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=13.1
Q ss_pred hhHHHHHHcCCEEEE
Q psy15652 2 EEEEEDAVTGIKILL 16 (92)
Q Consensus 2 ~Lv~~~h~~gmkvil 16 (92)
+++++++++|+++.+
T Consensus 34 ~~l~~Lk~~g~~~~I 48 (147)
T TIGR01656 34 PALLTLRAAGYTVVV 48 (147)
T ss_pred HHHHHHHHCCCEEEE
Confidence 588999999999875
No 269
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.80 E-value=86 Score=20.00 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=15.8
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++.+++++.|+++.+|.-
T Consensus 46 ~la~~LR~~gi~v~~d~~ 63 (121)
T cd00858 46 EISEELRELGFSVKYDDS 63 (121)
T ss_pred HHHHHHHHCCCEEEEeCC
Confidence 578889999999999985
No 270
>PRK04311 selenocysteine synthase; Provisional
Probab=20.76 E-value=91 Score=25.11 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=15.8
Q ss_pred hhHHHHHHcCCEEEEEe
Q psy15652 2 EEEEEDAVTGIKILLDY 18 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~ 18 (92)
++++.||++|+.||+|.
T Consensus 241 eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 241 ELAALGKEHGLPVVYDL 257 (464)
T ss_pred HHHHHHHHcCCeEEEEC
Confidence 57899999999999998
No 271
>PRK07324 transaminase; Validated
Probab=20.72 E-value=1e+02 Score=23.37 Aligned_cols=22 Identities=23% Similarity=0.009 Sum_probs=18.6
Q ss_pred hhHHHHHHcCCEEEEEeccccC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHT 23 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~ 23 (92)
+|++.|+++|+-||.|-+....
T Consensus 177 ~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 177 EIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred HHHHHHHHCCCEEEEEcccccc
Confidence 5788899999999999987554
No 272
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=20.71 E-value=1.1e+02 Score=23.69 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=19.8
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDE 26 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~ 26 (92)
+|++++|++|-++++ -++|++..
T Consensus 83 ~lad~vH~~Ga~i~~--QL~H~Gr~ 105 (362)
T PRK10605 83 KITAGVHAEGGHIAV--QLWHTGRI 105 (362)
T ss_pred HHHHHHHhCCCEEEE--eccCCCCC
Confidence 689999999999988 56898865
No 273
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=20.58 E-value=1.3e+02 Score=22.65 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=22.7
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhH
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF 30 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf 30 (92)
+|.+-|+++|+-||+|-|.-..+....+|
T Consensus 208 ~l~~l~~~~~~llI~DEv~~g~gr~g~~~ 236 (398)
T PRK03244 208 AAREITDRHGALLVLDEVQTGIGRTGAWF 236 (398)
T ss_pred HHHHHHHHcCCEEEEeccccCCcccchHH
Confidence 57788999999999999986655555544
No 274
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=20.56 E-value=81 Score=25.60 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=27.6
Q ss_pred hhHHHHHHcCCEEEEEeccccCCCCchhHHHHhc-CCCCCCCcE
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKA-GIAPYDEYY 44 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~~h~wf~~a~~-~~s~~~d~f 44 (92)
+|.+|+.+.||+. .|-+|-+ .|+|+...-. -++++.|..
T Consensus 105 ela~Avr~qGL~F---Gvy~s~a-~h~W~~~~g~~~~~d~~dp~ 144 (430)
T COG3669 105 ELAKAVREQGLRF---GVYLSGA-WHPWDFHSGYYADSDEKDPN 144 (430)
T ss_pred HHHHHHHHcCCee---eEeeccC-cccccccCCccccccccCcc
Confidence 5788999999987 6788877 9999866432 244444443
No 275
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=20.50 E-value=91 Score=22.13 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.1
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
++++.++++|+.|++|.+...
T Consensus 147 ~~~~~~~~~~~~v~~D~~~~~ 167 (294)
T cd01166 147 EALEAAKARGVTVSFDLNYRP 167 (294)
T ss_pred HHHHHHHHcCCEEEECCCCcc
Confidence 467888999999999987643
No 276
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=20.49 E-value=80 Score=18.40 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.8
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++.+++++.|+++.+|.-
T Consensus 22 ~~~~~Lr~~g~~v~~~~~ 39 (94)
T cd00738 22 KLLNALLANGIRVLYDDR 39 (94)
T ss_pred HHHHHHHHCCCEEEecCC
Confidence 467888999999988773
No 277
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.49 E-value=93 Score=21.05 Aligned_cols=21 Identities=14% Similarity=-0.077 Sum_probs=16.6
Q ss_pred hhHHHHHHcCCEEEEEeccccCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTS 24 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s 24 (92)
+|++.++++|+++.|+= |++.
T Consensus 79 ~ll~~lk~~Gl~i~l~T--g~~~ 99 (147)
T TIGR02826 79 SLLKIFKEKGLKTCLYT--GLEP 99 (147)
T ss_pred HHHHHHHHCCCCEEEEC--CCCC
Confidence 68899999999998873 6543
No 278
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=20.49 E-value=94 Score=23.82 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.7
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
++++.||++|+-||+|.+-
T Consensus 194 ~I~~l~~~~g~~vivD~a~ 212 (424)
T PLN02855 194 DIVHWAHAVGAKVLVDACQ 212 (424)
T ss_pred HHHHHHHHcCCEEEEEhhh
Confidence 4678899999999999885
No 279
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.45 E-value=95 Score=21.18 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.0
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.++++|++||+--+
T Consensus 110 ~ii~~~~~~~~~vil~t~ 127 (204)
T cd01830 110 QLIRRAHARGIKVIGATI 127 (204)
T ss_pred HHHHHHHHCCCeEEEecC
Confidence 588999999999997444
No 280
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=20.45 E-value=69 Score=24.57 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred hhHHHHHHcCCEEEEEeccccCCC
Q psy15652 2 EEEEEDAVTGIKILLDYVPNHTSD 25 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH~s~ 25 (92)
++|++|+++|+.|-.+..|.|..-
T Consensus 163 ~~i~~ak~~g~~vt~ev~phhL~l 186 (344)
T cd01316 163 NLIRLAKARGLKVTCEVSPHHLFL 186 (344)
T ss_pred HHHHHHHHCCCcEEEEechHHeec
Confidence 688999999999999999999653
No 281
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=20.34 E-value=98 Score=22.93 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.9
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++++.|+++|+.|++|..
T Consensus 160 ~i~~~~~~~~~~li~D~a 177 (373)
T cd06453 160 EIGEIAHEAGVPVLVDGA 177 (373)
T ss_pred HHHHHHHHcCCEEEEEhh
Confidence 578889999999999975
No 282
>PRK08175 aminotransferase; Validated
Probab=20.28 E-value=93 Score=23.61 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=18.0
Q ss_pred hhHHHHHHcCCEEEEEecccc
Q psy15652 2 EEEEEDAVTGIKILLDYVPNH 22 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~NH 22 (92)
+|++.|+++|+.||.|-+.-.
T Consensus 188 ~i~~~a~~~~i~ii~De~y~~ 208 (395)
T PRK08175 188 KVVALAKRYDVLVVHDLAYAD 208 (395)
T ss_pred HHHHHHHHcCcEEEEecchHh
Confidence 578899999999999987754
No 283
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=20.12 E-value=98 Score=25.25 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.3
Q ss_pred hhHHHHHHcCCEEEEEec
Q psy15652 2 EEEEEDAVTGIKILLDYV 19 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V 19 (92)
++.+-|+++|++||+|.-
T Consensus 202 ~I~elA~~~Gl~Vi~DaA 219 (460)
T PRK13237 202 AVRELCDKHGIKVFFDAT 219 (460)
T ss_pred HHHHHHHHcCCEEEEECc
Confidence 466788999999999974
No 284
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=20.04 E-value=80 Score=25.81 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=16.3
Q ss_pred hhHHHHHHcCCEEEEEecc
Q psy15652 2 EEEEEDAVTGIKILLDYVP 20 (92)
Q Consensus 2 ~Lv~~~h~~gmkvilD~V~ 20 (92)
+++++|+++|+.|++|.-+
T Consensus 288 ~al~~Ak~~G~~VsfDpN~ 306 (496)
T PLN02543 288 RAIELSKKFGGLIFFDLNL 306 (496)
T ss_pred HHHHHHHHCCCEEEEeCCC
Confidence 5788999999999999754
Done!