RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15652
(92 letters)
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 76.0 bits (188), Expect = 5e-18
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKG 51
GIK++LD +HT H WF K+ G Y +YYVW +
Sbjct: 83 GIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKET 123
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 69.2 bits (170), Expect = 1e-15
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI-APYDEYYVWKEGK 50
GIK+++D NHTS+ H WF K+ + Y +YYVW
Sbjct: 95 GIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPD 135
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 68.8 bits (169), Expect = 2e-15
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIA-PYDEYYVWKEGKGVWIPG 56
G+K + D V NH S EH+WF +S++ P +++ W+ KG G
Sbjct: 101 GMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEG 147
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 68.3 bits (168), Expect = 3e-15
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIA-PYDEYYVWKEGK 50
+++++D V NHTSD+H WF +SK+ PY +YY W++GK
Sbjct: 106 NMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGK 146
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 68.3 bits (168), Expect = 3e-15
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIA-PYDEYYVWKEGK 50
G+++++D V NH+SD+H+WF S+A PY +YY W++GK
Sbjct: 93 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK 133
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 68.3 bits (168), Expect = 3e-15
Identities = 20/41 (48%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIA-PYDEYYVWKEGK 50
G+K++LD V NHTSDEH WF +S++ P ++Y+W++GK
Sbjct: 92 GLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGK 132
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 67.6 bits (166), Expect = 4e-15
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIA-PYDEYYVWKEGK 50
+K+++D V NHTSDEH+WF +S+ Y +YY+W+ GK
Sbjct: 92 NMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGK 132
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 65.7 bits (160), Expect = 2e-14
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKG 51
GI + D+V NHT+D+H W ++AG A Y +YY +
Sbjct: 169 GISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRT 209
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 64.8 bits (158), Expect = 5e-14
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIA-PYDEYYVWKEGKGVWIPG 56
GIKI LDYV NHT H WF ++ + PY YY + E I
Sbjct: 120 GIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAA 166
Score = 50.5 bits (121), Expect = 4e-09
Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 1 MEEEEEDAVTGIKILLDYVPNH-----TSDEHDWFAKSKAGIA-PYDEYYVWKEGK 50
++ + ++ +D+ TS+ W + +K G + ++ + K+ K
Sbjct: 243 CKKFYDKGNNIYELTVDFESTWGLLIRTSNASFWPSGTKYGASSSSEKLALNKDFK 298
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 64.1 bits (157), Expect = 7e-14
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIA-PYDEYYVWKE 48
GIKI++D V NHTSDEH WF +++ +YY+W +
Sbjct: 92 GIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCD 130
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 62.6 bits (152), Expect = 2e-13
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGK 50
GI ++LD V NH + EH W K++AG Y Y+ +
Sbjct: 174 GISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDR 213
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 61.0 bits (148), Expect = 9e-13
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPY-DEYYVWKEGKG 51
GI ++D++ NHTS+EH+W + AG + + YY++ + +
Sbjct: 176 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRM 217
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 57.0 bits (138), Expect = 2e-11
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 11 GIKILLDYVPNHTSDEHDWFA------KSKAGIAPYDEYYVWKEGKG 51
G+ I+ D VPNH + H + K + + Y Y+ + E +
Sbjct: 77 GLGIIQDIVPNHMAVHHTNWRLMDVLKKGRH--SRYYNYFDFYEEEE 121
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 51.9 bits (124), Expect = 2e-09
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKA----GIAPYDEYYVWKEGKGVWIPGLL 58
G+ I+ D VPNH + + + Y Y+ + +L
Sbjct: 79 GLGIIQDIVPNHMAVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPIL 130
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 50.4 bits (121), Expect = 4e-09
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 11 GIKILLDYVPNHTSDEHDWF--AKSKAGIAPYDEYYVWKE 48
G++++LD V NHT F +PY ++Y K
Sbjct: 110 GVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKG 149
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 49.8 bits (119), Expect = 9e-09
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 11 GIKILLDYVPNHTSDEHDWF--AKSKAGIAPYDEYYVW 46
I++D + NH S E F +K + Y ++
Sbjct: 77 THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLT 114
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 49.4 bits (118), Expect = 1e-08
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAP--YDEYYVWKEGKGV 52
I+++LD PN+ E+ WF+ +A D W + GV
Sbjct: 95 SIRVILDLTPNYRG-ENSWFSTQVDTVATKVKDALEFWLQ-AGV 136
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 49.4 bits (118), Expect = 1e-08
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKS--KAGIAPYDEYYVWKE 48
IKI+LD +HT+ ++ F K+ + +PY E + +
Sbjct: 325 KIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLS 364
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 48.9 bits (117), Expect = 2e-08
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 11 GIKILLDYVPNHTSDEHDWF--AKSKAGIAPYDEYYVWKEGKGVWIPG 56
GIKI+LD V NH D+ F K + Y +++ ++
Sbjct: 233 GIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 280
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 47.7 bits (114), Expect = 4e-08
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGK 50
G+K++LD V NHTS + + + +Y +G+
Sbjct: 97 GMKVMLDIVYNHTSPDSVLATEH------PEWFYHDADGQ 130
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 47.0 bits (112), Expect = 7e-08
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
IK++LD V NH+S +F P+ + W
Sbjct: 116 NIKVVLDGVFNHSSRGFFFFHDVLEN-GPHSPWVNW 150
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 46.6 bits (111), Expect = 1e-07
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 11 GIKILLDYVPNHTSDEHDWF--AKSKAGIAPYDEYYVWKE 48
GI++LLD V NH+ F + Y +++ +
Sbjct: 232 GIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRS 271
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 45.5 bits (108), Expect = 3e-07
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 11 GIKILLDYVPNHTSDEHDWF--AKSKAGIAPYDEYYVWKEGKGVWIPG 56
GI+++LD V NH E F + Y +++ E P
Sbjct: 236 GIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPR 283
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 44.8 bits (105), Expect = 6e-07
Identities = 7/42 (16%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGV 52
GI+++LD++P + + D + + +++ W + + +
Sbjct: 195 GIRVILDFIPRTAARDSDLIRE-------HPDWFYWIKVEEL 229
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 42.5 bits (100), Expect = 3e-06
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 11 GIKILLDYVPNHT--SDEHDWFAKSKA-------GIAPYDEYYVWK 47
G+++ D V +H +D +W + I+ + W
Sbjct: 95 GMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWT 140
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 42.5 bits (100), Expect = 3e-06
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI---------APYDEYYVWKEGKG 51
++LD V NHT D H WF K +P+ YY +
Sbjct: 256 KGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPD 305
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 42.1 bits (99), Expect = 4e-06
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKE 48
G+ ++ D V +H H W P ++ +
Sbjct: 212 GMGLIQDVVLSHIGKHHWWMKD-----LPTPDWINYGG 244
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 42.1 bits (99), Expect = 5e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GIK+++D+ PNHTS + YD
Sbjct: 125 GIKVIIDFAPNHTSPASETNPSYMENGRLYDNGT 158
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 41.3 bits (97), Expect = 7e-06
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYD------EYYVWKEGKGVWIPGLLKKSRKF 64
+++ D V NH + + + P + E Y K PG F
Sbjct: 92 NVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDF 151
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 41.5 bits (97), Expect = 8e-06
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 11 GIKILLDYVPNHTS--DEHDWFAKSKAGI-APYDEYYVW 46
IK+ D V NH D + + P W
Sbjct: 222 DIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAW 260
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 41.0 bits (96), Expect = 1e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
IK+++D+ PNHTS + YD
Sbjct: 130 NIKVIIDFAPNHTSPASETDPTYAENGRLYDNGT 163
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 40.2 bits (94), Expect = 2e-05
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
GIK+++D+VPNH++ + G A Y+
Sbjct: 121 GIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYM 156
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 40.2 bits (94), Expect = 2e-05
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
IK+++D+ PNHTS YD
Sbjct: 129 NIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 39.6 bits (93), Expect = 3e-05
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYD 41
G+ +++D V NH + + + P+
Sbjct: 111 GMYLMVDVVANHMGYDGAGSSVDYSVFKPFS 141
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 39.9 bits (93), Expect = 3e-05
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
GI++ D V NH + P +
Sbjct: 96 GIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQ 129
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 39.1 bits (91), Expect = 5e-05
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 11 GIKILLDYVPNHTSD-----EH-DWFAKSKAGIAPYDEYYVWK 47
G++I LD+ + D +H +WF G + E K
Sbjct: 334 GLEIALDFALQCSPDHPWVHKHPEWFHHRPDGTIAHAENPPKK 376
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 39.0 bits (91), Expect = 6e-05
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
GIK+++D V NHT+ ++ + +
Sbjct: 88 GIKVIVDAVINHTTFDYAAISNEVKS---IPNWTHG 120
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 39.0 bits (91), Expect = 6e-05
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYD--EYYVW 46
G+ +++D VP+H + + P+D Y+
Sbjct: 111 GMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHP 148
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 36.6 bits (85), Expect = 4e-04
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGI--APYDEYYVWKEGKGVWIP 55
G++ + D V NH ++ D W
Sbjct: 82 GVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDD 128
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 35.6 bits (82), Expect = 8e-04
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEY 43
I + D V NH A + P + +
Sbjct: 94 DINVYGDVVMNHKMGADFTEAVQAVQVNPTNRW 126
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta
sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1
c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A*
1qi4_A* 2amg_A 1qpk_A*
Length = 527
Score = 33.9 bits (77), Expect = 0.003
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 11 GIKILLDYVPNHTSDEHDWF 30
G+K+L D VPNH + +
Sbjct: 106 GVKVLYDVVPNHMNRGYPDK 125
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 33.2 bits (75), Expect = 0.006
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKE 48
GIK++ D+VP+ + + + Y +
Sbjct: 706 GIKVMADWVPDQMYALPEKEVVTATRVDKYGTPVAGSQ 743
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 31.3 bits (71), Expect = 0.026
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 11 GIKILLDYVPNHTSDEHDWF 30
GIK++ D V NH + +
Sbjct: 100 GIKVIADVVINHRAGGDLEW 119
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 28.5 bits (63), Expect = 0.27
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWF-AKSKAGIAPYDEYYVW 46
G+ I +D + NH + A + G + Y
Sbjct: 78 GVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQ 114
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 26.1 bits (58), Expect = 1.6
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVW 53
G+ ++LD V NH F + + KE W
Sbjct: 216 GLSVVLDIVLNH-------FGPEGNYLPLLAPAFFHKERMTPW 251
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG,
midwest center for structural genomics, transporter;
HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB:
4ey3_A* 3t0n_A* 4eyk_A*
Length = 368
Score = 26.1 bits (58), Expect = 1.8
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 7 DAVTGIKILLDYVPNHTSDEHDWFA---KSKAGIAP-------YDEYYVWKEG 49
DA G+ Y H S + F K + G P YD ++ E
Sbjct: 243 DAALGVVTAHMYSAAHPSAMNKEFVAAYKKEFGQRPGFMAVGGYDGIHLVFEA 295
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase;
HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1
c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A
1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A*
1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A*
3ij8_A* ...
Length = 496
Score = 25.9 bits (56), Expect = 2.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 11 GIKILLDYVPNHTSDEHDW 29
G++I +D V NH
Sbjct: 90 GVRIYVDAVINHMCGSGAA 108
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 25.6 bits (56), Expect = 2.5
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 9/46 (19%)
Query: 5 EEDAVTGIKILLDYVPNH---------TSDEHDWFAKSKAGIAPYD 41
+ + V I L Y+P D D + + PYD
Sbjct: 334 DFEGVCTILEWLSYMPKDNRSPVPVVTPKDPIDREIEFQPSRGPYD 379
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 25.7 bits (57), Expect = 2.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 11 GIKILLDYVPNHT 23
GI++++D V NHT
Sbjct: 280 GIEVIIDVVYNHT 292
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 25.3 bits (56), Expect = 2.9
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
G+ + LD V NH F S ++ Y Y
Sbjct: 206 GLGVFLDVVYNH-------FGPSGNYLSSYAPSY 232
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 25.6 bits (57), Expect = 2.9
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 11 GIKILLDYVPNHT 23
GI+++LD V NH+
Sbjct: 255 GIEVILDIVLNHS 267
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 25.3 bits (56), Expect = 3.0
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 7/34 (20%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
G+ ++LD V NH + Y+
Sbjct: 181 GLGVILDVVYNH-------VGPEGNYMVKLGPYF 207
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
{Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
c.1.8.1
Length = 750
Score = 25.4 bits (56), Expect = 3.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 11 GIKILLDYVPNHT 23
GIK+ +D V NHT
Sbjct: 286 GIKVYMDVVYNHT 298
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 24.6 bits (54), Expect = 5.5
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 11 GIKILLDYVPNHTSD-EHDWFAKSKAGIAPYDEYYVWKEGKG 51
G++++LD V NH E+ F K P Y+ + G
Sbjct: 329 GLRVILDVVFNHVYKRENSPFEK----TVPG--YFFRHDECG 364
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 24.5 bits (54), Expect = 6.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 3 EEEEDAVTGIKILLDYVPNHTSDE 26
+E+DAV +K LL Y+P++ E
Sbjct: 242 GDEKDAVEYVKQLLSYLPSNNLSE 265
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 24.5 bits (54), Expect = 6.6
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 3 EEEEDAVTGIKILLDYVPNHTSDE 26
+ +E A++ ++ LL Y+P++ ++E
Sbjct: 243 DNDEKAMSLVRTLLSYLPSNNAEE 266
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism,
4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio
molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A
1viw_A*
Length = 471
Score = 24.3 bits (52), Expect = 7.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 11 GIKILLDYVPNHTSDEHDWF 30
G++I +D V NH + +
Sbjct: 88 GVRIYVDAVINHMTGMNGVG 107
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 24.4 bits (54), Expect = 7.5
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 3 EEEEDAVTGIKILLDYVPNHTSDE 26
E + +A+ ++ L+D++P + ++
Sbjct: 250 ENDVEALAEVRRLVDFLPLNNREK 273
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
sandwich, transferase; 2.30A {Escherichia coli} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Length = 617
Score = 24.1 bits (53), Expect = 8.5
Identities = 7/18 (38%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 11 GIKILLDYVPNH-TSDEH 27
G+ ++LD+VP H +D+
Sbjct: 218 GLNVILDWVPGHFPTDDF 235
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 24.1 bits (53), Expect = 8.6
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 3 EEEEDAVTGIKILLDYVPNHTSDE 26
E+++ A K LL ++P + ++E
Sbjct: 239 EDDDAAELIAKKLLSFLPQNNTEE 262
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 24.1 bits (52), Expect = 8.8
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 5 EEDAVTGIKILLDYVPNH 22
+ V I + YVP
Sbjct: 321 DLAGVEKIVEWMSYVPAK 338
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 24.1 bits (53), Expect = 8.8
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 11 GIKILLDYVPNH-TSDEH 27
GI +++D+VP H D
Sbjct: 326 GIGVIVDWVPAHFPKDAW 343
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 24.1 bits (53), Expect = 9.0
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 3 EEEEDAVTGIKILLDYVPNHTSDE 26
+ E++A+ K LL Y+P++ +E
Sbjct: 237 DSEQEAINLTKRLLSYLPSNNMEE 260
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 24.1 bits (53), Expect = 9.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 3 EEEEDAVTGIKILLDYVPNHTSDE 26
E+DA ++ LL Y+P + S +
Sbjct: 253 SGEQDAFDYVRELLSYLPPNNSTD 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.434
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,509,757
Number of extensions: 76501
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 74
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)