RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15652
(92 letters)
>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea
[TaxId: 489]}
Length = 554
Score = 53.4 bits (127), Expect = 2e-10
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDE-YYVWKEGKGVW 53
GI ++D++ NHTS+EH+W + AG +D YY++ + +
Sbjct: 176 GISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD 219
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 49.9 bits (119), Expect = 3e-09
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIA-PYDEYYVW 46
G+ I+ D VPNH + + +YY +
Sbjct: 79 GLGIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYYTY 115
Score = 24.5 bits (53), Expect = 2.8
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 6 EDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVWIPGLL 58
ED I +L ++ + +W + ++ DEY ++ G + G
Sbjct: 448 EDVRMKISVLSEFPEEWKNKVEEWHSIINPKVSRNDEYRYYQVLVGSFYEGFS 500
>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707
[TaxId: 1416]}
Length = 394
Score = 36.9 bits (84), Expect = 1e-04
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKE 48
GI++ D V NH + P +
Sbjct: 92 GIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTG 129
>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp.,
ksm-k38 [TaxId: 1409]}
Length = 390
Score = 35.4 bits (80), Expect = 4e-04
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVW 53
I + D V NH A + P + + +
Sbjct: 94 DINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTID 136
>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium
adolescentis [TaxId: 1680]}
Length = 434
Score = 34.0 bits (76), Expect = 0.001
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVWIPG 56
I++D + NH S E F A + Y ++ V+ G
Sbjct: 77 THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNG 122
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm
(Tenebrio molitor), larva [TaxId: 7067]}
Length = 378
Score = 33.3 bits (75), Expect = 0.002
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVWIPG 56
G++I +D V NH + + + Y G G +
Sbjct: 88 GVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSP 133
>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon
Pyrococcus woesei [TaxId: 2262]}
Length = 361
Score = 32.2 bits (72), Expect = 0.005
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVW 53
GIK++ D V NH + + P+ Y W + V
Sbjct: 100 GIKVIADVVINHRAGGDLEW-------NPFVGDYTWTDFSKVA 135
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera
(Bacillus amyloliquefaciens) and (Bacillus
licheniformis) [TaxId: 1390]}
Length = 393
Score = 31.5 bits (70), Expect = 0.009
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKE 48
+++ D V NH + + + P + E
Sbjct: 92 NVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSE 129
>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 403
Score = 31.4 bits (70), Expect = 0.010
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
G++I +D V NH + +
Sbjct: 90 GVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNRE 125
>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
sp., lx3 [TaxId: 576]}
Length = 478
Score = 30.8 bits (68), Expect = 0.014
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAG-IAPYDEYYVWKEGKGVWIP 55
+++++D V NHTSD+H WF +SK+ PY +YY W++GK P
Sbjct: 92 NMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPP 137
>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 432
Score = 30.1 bits (66), Expect = 0.026
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 1 MEEEEEDAVTGIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
+ ++LD V NHT D H WF K +
Sbjct: 124 NDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQS 169
>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae
[TaxId: 573]}
Length = 563
Score = 28.3 bits (61), Expect = 0.11
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 12 IKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVW 53
+ +++D V NHT+ S Y E G
Sbjct: 195 MNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSV 236
Score = 24.0 bits (50), Expect = 3.5
Identities = 3/47 (6%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 2 EEEEEDAVTGIKILLDYVPNHTSDEHDWF--AKSKAGIAPYDEYYVW 46
E + + + ++ ++ + + Y W
Sbjct: 109 SSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNW 155
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 393
Score = 28.0 bits (61), Expect = 0.13
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 11 GIKILLDYVPNHT--SDEHDWFAKSKAGIAPYDEYYVWKEGKGVW 53
G+++ D V +H +D +W + + ++ W
Sbjct: 95 GMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAW 139
>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
b3728 [TaxId: 1663]}
Length = 393
Score = 26.9 bits (59), Expect = 0.32
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 14 ILLDYVPNHTSDEHDWFAKSKAGIAPY 40
DY P+ T + +KA ++ Y
Sbjct: 288 RHFDYKPSRTDGYDGVWDSAKANMSMY 314
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
amyloderamosa [TaxId: 32043]}
Length = 475
Score = 26.6 bits (57), Expect = 0.42
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVWIPGLLKKSRKFVN 66
GIK+ +D V NHT++ W + Y W+ L ++ F +
Sbjct: 124 GIKVYMDVVYNHTAEGGTWTSSDP----TTATIYSWRGLDNATYYELTSGNQYFYD 175
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan
maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
Length = 357
Score = 26.4 bits (57), Expect = 0.57
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVWIPG 56
G+K+L D VPNH + + + + G
Sbjct: 106 GVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCD 151
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 333
Score = 26.1 bits (57), Expect = 0.64
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 3 EEEEDAVTGIKILLDYVPNH 22
++ V I + YVP
Sbjct: 313 VDDLAGVEKIVEWMSYVPAK 332
>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase
{Thermoanaerobacterium [TaxId: 28895]}
Length = 406
Score = 25.8 bits (55), Expect = 0.82
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 16 LDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
+D+ PNHTS + YD +
Sbjct: 135 IDFAPNHTSPASETDPTYAENGRLYDNGTLL 165
>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
oryzae, Taka-amylase [TaxId: 5062]}
Length = 381
Score = 25.8 bits (55), Expect = 0.89
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 16 LDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
+D V NH + + + P+ +
Sbjct: 116 VDVVANHMGYDGAGSSVDYSVFKPFSSQDYF 146
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 258
Score = 25.1 bits (54), Expect = 1.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 3 EEEEDAVTGIKILLDYVPNHTSDE 26
E+DA ++ LL Y+P + S +
Sbjct: 234 SGEQDAFDYVRELLSYLPPNNSTD 257
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
(transcarboxylase 12S) {Propionibacterium freudenreichii
[TaxId: 1744]}
Length = 253
Score = 24.8 bits (53), Expect = 1.9
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 3 EEEEDAVTGIKILLDYVPNH 22
E+++ A K LL ++P +
Sbjct: 233 EDDDAAELIAKKLLSFLPQN 252
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 24.3 bits (52), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 3 EEEEDAVTGIKILLDYVPNHTSDE 26
+E+DAV +K LL Y+P++ E
Sbjct: 233 GDEKDAVEYVKQLLSYLPSNNLSE 256
>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum
vulgare), AMY1 isozyme [TaxId: 4513]}
Length = 347
Score = 24.5 bits (52), Expect = 2.7
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 12 IKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYY 44
++ + D V NH ++
Sbjct: 83 VQAIADIVINHRCADYKDSRGIYCIFEGGTSDG 115
>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima
[TaxId: 2336]}
Length = 572
Score = 24.2 bits (51), Expect = 2.9
Identities = 7/43 (16%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVWKEGKGVW 53
GI+++LD++P + + D + + +++ W + + +
Sbjct: 195 GIRVILDFIPRTAARDSDLIRE-------HPDWFYWIKVEELA 230
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 23.9 bits (51), Expect = 3.3
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 3 EEEEDAVTGIKILLDYVPNH 22
+ +E A++ ++ LL Y+P++
Sbjct: 231 DNDEKAMSLVRTLLSYLPSN 250
>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase
{Bacillus stearothermophilus, maltogenic alpha-amylase
[TaxId: 1422]}
Length = 407
Score = 23.9 bits (50), Expect = 3.5
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 14 ILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
+++D+VPNH++ + G A Y+
Sbjct: 124 VIVDFVPNHSTPFKANDSTFAEGGALYNNGTYM 156
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 24.1 bits (51), Expect = 3.7
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 12 IKILLDYVPNHTSDEHDWF-AKSKAGIAPYDEYYVW 46
+ I +D + NH + A + G + Y
Sbjct: 79 VDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQ 114
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 23.0 bits (48), Expect = 7.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 3 EEEEDAVTGIKILLDYVP 20
EE + GIK + +P
Sbjct: 269 ASEEGVLEGIKKYVGMLP 286
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 23.1 bits (48), Expect = 9.1
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKSKAGIAPYDEYYVW 46
G+ ++LD V NH E ++ K + +
Sbjct: 91 GLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKTPWG 126
>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix
orenii [TaxId: 31909]}
Length = 409
Score = 22.7 bits (47), Expect = 9.3
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 11 GIKILLDYVPNHTSDEHDWFAKS-KAGIAPYDEYYVWKEGKGVWIP 55
GIK+++D NHTS+ H WF K+ + + Y +YYVW
Sbjct: 95 GIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKE 140
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.434
Gapped
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,561
Number of extensions: 15948
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 36
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)