BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15654
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 223 bits (568), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 126/155 (81%), Gaps = 1/155 (0%)
Query: 5 SNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKV 64
SNVENL P IIR V KE+ LT PP+GI V NEED+TD+Q I+GP GTPY+ G F++
Sbjct: 5 SNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRM 64
Query: 65 KLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLI 124
KLLL K+FP+ PPK +FLTKIFHPNV NGEICVN LK+DW +LGI+H+LLTIKCLLI
Sbjct: 65 KLLLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLI 123
Query: 125 VPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
PNPESALNEEAG+LLLE+Y++Y+ RA ++TEIH
Sbjct: 124 HPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 14 IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
I RR++KE Q+L PP GI E+ +I+GP GTPY G +K++L L + +P
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALN 133
PPK FLTKI+HPN+D K G IC++ LK W+P L I+ +LL+I+ LL P P+ L+
Sbjct: 62 MEPPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 134 EEAGKLLLEHYDDYSRRATMMTEIHA 159
+ + + +D A +I+A
Sbjct: 121 SKVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 14 IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
I RR++KE Q+L PP GI E+ +I+GP GTPY G +K++L L + +P
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALN 133
PPK FLTKI+HPN+D K G IC++ LK W+P L I+ +LL+I+ LL P P+ L+
Sbjct: 62 MEPPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 134 EEAGKLLLEHYDDYSRRATMMTEIHA 159
+ + + +D A +I+A
Sbjct: 121 SKVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ ++ + L + PP G+ +E +I A+I GP GTP+ +G FK+ + S+ +P+
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP FL+K+FHPNV +G IC++ L+ W+P + IL +I+ LL PNP S N +
Sbjct: 67 PPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQ 125
Query: 136 AGKLLLEHYDDYSRRATMMTE 156
A +L E+ +Y +R + + E
Sbjct: 126 AAQLYQENKREYEKRVSAIVE 146
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ ++ + L + PP G+ E++I +AII GP TP+ +G FK+ L ++ +P+
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP F++K+FHPNV +G IC++ L+ W+P + IL +I+ LL PNP S N
Sbjct: 70 PPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSL 128
Query: 136 AGKLLLEHYDDYSRRATMMTE 156
A +L E+ +Y +R + E
Sbjct: 129 AAQLYQENRREYEKRVQQIVE 149
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ ++ + L + PP G+ E++I +AII GP TP+ +G FK+ L ++ +P+
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP F++K+FHPNV +G IC++ L+ W+P + IL +I+ LL PNP S N
Sbjct: 67 PPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSL 125
Query: 136 AGKLLLEHYDDYSRRATMMTE 156
A +L E+ +Y +R + E
Sbjct: 126 AAQLYQENRREYEKRVQQIVE 146
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 10/174 (5%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVP 76
R+ KEL+D+ + I I + + + I GP GTPY G+F + + + ++P P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 77 PKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEA 136
PK F+TKI+HPN+ ++ G IC++ LK +W+P L I+ LL+I+ LL P P+ + E
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146
Query: 137 GKLLLEHYDDYSRRATMMTEIHAQA----------SKCSKLGYKSSESRQSNIE 180
K+ E++ + + A++ T+ A K +++G+ +++ + I+
Sbjct: 147 AKMYKENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMGFSEDQAKNALIK 200
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ ++ + L + PP GI + +I A+I GP TP+ G FK+ L S+++P+
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP F++++FHPN+ +G IC++ L+ W+P + IL +I+ LL PNP S N E
Sbjct: 67 PPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSE 125
Query: 136 AGKLLLEHYDDYSRRATMMTE 156
A ++ E +Y+RR + E
Sbjct: 126 AARMYSESKREYNRRVRDVVE 146
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 10/159 (6%)
Query: 1 MNSMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNG 60
MNSM+ ++R++KEL DL + PP +D+ QA I GP +PY G
Sbjct: 8 MNSMA---------LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGG 58
Query: 61 YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIK 120
F + + ++P PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I
Sbjct: 59 VFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSIC 117
Query: 121 CLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
LL PNP+ L E ++ D Y+R + T+ +A
Sbjct: 118 SLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 156
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 13/163 (7%)
Query: 11 SPQIIRRVSKELQDL-------------TKTPPEGIHVCINEEDITDVQAIIDGPAGTPY 57
+P+ R+ KEL D+ T + G+ I DI + I GP GTPY
Sbjct: 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPY 89
Query: 58 SNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILL 117
G+F + +++ ++P PPK F+TKI+HPN+ ++ G IC++ LK +W+P L I+ LL
Sbjct: 90 EGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALL 149
Query: 118 TIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+I+ +L P P + E K+++E++ + + A + TE A+
Sbjct: 150 SIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK 192
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KELQDL + PP +D+ QA I GP+ +PY G F + + ++P
Sbjct: 8 LKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F TKI+HPN+++ NG IC++ L+ W+P L + +LL+I LL PNP+ L
Sbjct: 68 KPPKVAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 126
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
+ + + Y+R A T+ +A
Sbjct: 127 DIAHIYKSDKEKYNRLAREWTQKYA 151
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Query: 1 MNSMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNG 60
MNSM+ ++R+ KEL DL + PP +D+ QA I GP +PY G
Sbjct: 8 MNSMA---------LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGG 58
Query: 61 YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIK 120
F + + ++P PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I
Sbjct: 59 VFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSIC 117
Query: 121 CLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
LL PNP+ L E ++ + Y+R A T+ +A
Sbjct: 118 SLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQKYA 156
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R++KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 2 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 62 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 120
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ D Y+R + T+ +A
Sbjct: 121 EIARIYKTDRDKYNRISREWTQKYA 145
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R++KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 5 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 65 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ D Y+R + T+ +A
Sbjct: 124 EIARIYKTDRDKYNRISREWTQKYA 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R++KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 11 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 70
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 71 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 129
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ D Y+R + T+ +A
Sbjct: 130 EIARIYKTDRDKYNRISREWTQKYA 154
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KELQDL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 66 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 124
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y++ A T+ +A
Sbjct: 125 EIARIYKTDRERYNQLAREWTQKYA 149
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 8 ENLSPQ-IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKL 66
ENL Q ++R++KEL DL+K PP +D+ QA I GP +PYS G F + +
Sbjct: 15 ENLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNI 74
Query: 67 LLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVP 126
++P PPK F TKI+HPN++++ G IC++ LK W+P L I +LL+I LL P
Sbjct: 75 HFPSDYPFKPPKVNFTTKIYHPNINSQ-GAICLDILKDQWSPALTISKVLLSISSLLTDP 133
Query: 127 NPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
NP+ L E L Y + A ++ +A
Sbjct: 134 NPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 4 MSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK 63
MS + ++R+ KEL DL + PP +D+ QA I GP +PY G F
Sbjct: 10 MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF 69
Query: 64 VKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
+ + ++P PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL
Sbjct: 70 LTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLL 128
Query: 124 IVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
PNP+ L E ++ + Y+R A T+ +A
Sbjct: 129 CDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 65 KPPKVAFTTRIYHPNINS-NGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y+R A T+ +A
Sbjct: 124 EIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 65 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y+R A T+ +A
Sbjct: 124 EIARIYKTDREKYNRIAREWTQKYA 148
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 63 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y+R A T+ +A
Sbjct: 122 EIARIYKTDREKYNRIAREWTQKYA 146
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 8 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 68 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 126
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y+R A T+ +A
Sbjct: 127 EIARIYKTDREKYNRIAREWTQKYA 151
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ KE + L P GI +++++ Q I+GP +PY +G F+++L L ++P
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PK FLTKI+HPN+D + G IC++ LK +W+P L I+ +LL+I+ LL PNP L +
Sbjct: 68 APKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 126
Query: 136 AGKLLLEHYDDYSRRATMMTEIHAQ 160
+ +++ +A T+++A+
Sbjct: 127 VAEDWIKNEQGAKAKAREWTKLYAK 151
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 65 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y+R A T+ +A
Sbjct: 124 EIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ KE Q L P GI +E + +I GP +P+ G FK++L L + +P
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESAL 132
PK F+TKI+HPNVD K G IC++ LK W+P L I+ +LL+I+ LL PNP+ L
Sbjct: 69 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 124
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ KE Q L P GI +E + +I GP +P+ G FK++L L + +P
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PK F+TKI+HPNVD K G IC++ LK W+P L I+ +LL+I+ LL PNP+ L +
Sbjct: 66 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
Query: 136 AGK 138
+
Sbjct: 125 VAE 127
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W P L I +LL+I LL PNP+ L
Sbjct: 65 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y+R A T+ +A
Sbjct: 124 EIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ KE Q L P GI +E + +I GP +P+ G FK++L L + +P
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PK F+TKI+HPNVD K G IC++ LK W+P L I+ +LL+I+ LL PNP+ L +
Sbjct: 64 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 122
Query: 136 AGK 138
+
Sbjct: 123 VAE 125
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ KE + L P GI +++++ Q I+GP +PY +G F+++L L ++P
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PK FLTKI+HPN+D + G IC++ LK +W+P L I+ +LL+I+ LL PNP L +
Sbjct: 66 APKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 136 AGKLLLEHYDDYSRRATMMTEIHAQ 160
+ +++ +A T+++A+
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ KE Q L P GI +E + +I GP +P+ G FK++L L + +P
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESAL 132
PK F+TKI+HPNVD K G IC++ LK W+P L I+ +LL+I+ LL PNP+ L
Sbjct: 68 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ KE Q L P GI +E + +I GP +P+ G FK++L L + +P
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESAL 132
PK F+TKI+HPNVD K G IC++ LK W+P L I+ +LL+I+ LL PNP+ L
Sbjct: 71 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 126
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+++EL DL K PP +D+ QA I GPA +PY+ G F + + ++P
Sbjct: 3 LKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 63 KPPKVNFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVP 121
Query: 135 EAGKLL---LEHYDDYSRRATMMTEIHA 159
E + Y+ +R T IH
Sbjct: 122 EIAHVYKTDRSRYELSAREWTRKYAIHG 149
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA GP +PY G F + + ++P
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 65 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y+R A T+ +A
Sbjct: 124 EIARIYKTDREKYNRIAREWTQKYA 148
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ ++ + + + P G+ +++ A+I GPA TPY +G F++ L + +P+
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP FL+++FHPNV NGEIC++ L+ W P + IL +I+ L PNP S N E
Sbjct: 67 PPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVE 125
Query: 136 AGKLLLEHYDDYSRRATMMTE 156
A L +H Y +R E
Sbjct: 126 AATLFKDHKSQYVKRVKETVE 146
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R++KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG I ++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 63 KPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ D Y+R + T+ +A
Sbjct: 122 EIARIYKTDRDKYNRISREWTQKYA 146
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 1/156 (0%)
Query: 4 MSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK 63
MS + ++R+ KEL DL + PP +D+ QA I GP + Y G F
Sbjct: 10 MSGLVPRGSMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFF 69
Query: 64 VKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
+ + ++P PPK F TKI+HPN+++ NG IC++ L+ W+P L + +LL+I LL
Sbjct: 70 LTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLL 128
Query: 124 IVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
PNP+ L + ++ + Y+R A T+ +A
Sbjct: 129 CDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 164
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP + Y G F + + ++P
Sbjct: 9 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F TKI+HPN+++ NG IC++ L+ W+P L + +LL+I LL PNP+ L
Sbjct: 69 KPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 127
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
+ ++ + Y+R A T+ +A
Sbjct: 128 DIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 6 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 65
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG I ++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 66 KPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 124
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y+R A T+ +A
Sbjct: 125 EIARIYKTDREKYNRIAREWTQKYA 149
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP + Y G F + + ++P
Sbjct: 5 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F TKI+HPN+++ NG IC++ L+ W+P L + +LL+I LL PNP+ L
Sbjct: 65 KPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
+ ++ + Y+R A T+ +A
Sbjct: 124 DIAQIYKSDKEKYNRHAREWTQKYA 148
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ KE + L P GI +++++ Q I+GP +PY +G F+++L L ++P
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PK FLTKI+HPN+D + G I ++ LK +W+P L I+ +LL+I+ LL PNP L +
Sbjct: 66 APKVRFLTKIYHPNID-RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 136 AGKLLLEHYDDYSRRATMMTEIHAQ 160
+ +++ +A T+++A+
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 1/156 (0%)
Query: 4 MSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK 63
MS + ++R+ KEL DL + PP +D+ QA I GP +PY G F
Sbjct: 10 MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF 69
Query: 64 VKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
+ + ++P PPK F T+I+HPN+++ NG I ++ L+ W+P L I +LL+I LL
Sbjct: 70 LTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSIXLDILRSQWSPALTISKVLLSICSLL 128
Query: 124 IVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
PNP+ L E ++ + Y+R A T+ +A
Sbjct: 129 CDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG I ++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 65 KPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHAQASKCSKLGYKSSESR 175
E ++ + Y+R A T+ +A + + R
Sbjct: 124 EIARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIMAQQDR 164
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+RR+ KEL+++ + PP +DI A I GP +PY G F + + ++P
Sbjct: 6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
P+ F+TK++HPN++ KNG IC++ LK W+P L + +LL+I LL PNP L+
Sbjct: 66 KAPRVTFMTKVYHPNIN-KNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDP 124
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHAQ 160
E +L + + A T ++A+
Sbjct: 125 EVANVLRANKKQFEDTAREWTRMYAR 150
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PPK F T+I+HPN+++ NG I ++ L+ W+P L I +LL+I LL PNP+ L E
Sbjct: 63 PPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPE 121
Query: 136 AGKLLLEHYDDYSRRATMMTEIHA 159
++ + Y+R A T+ +A
Sbjct: 122 IARIYKTDREKYNRIAREWTQKYA 145
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 1/144 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R++KEL DL + PP +D+ QA I GPA +PY+ G F + + ++P
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PPK F TKI+HPN++ NG IC++ LK W+P L + +LL+I LL NP+ L E
Sbjct: 65 PPKISFTTKIYHPNINA-NGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPE 123
Query: 136 AGKLLLEHYDDYSRRATMMTEIHA 159
+ Y A T+ +A
Sbjct: 124 IAHIYKTDRPKYEATAREWTKKYA 147
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 3 LKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HP +++ NG I ++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 63 KPPKVAFTTRIYHPAINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y+R A T+ +A
Sbjct: 122 EIARIYKTDREKYNRIAREWTQKYA 146
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ KE + L P GI +++++ Q I+GP +PY +G F+++L L ++P
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PK FLTKI+HP +D + G I ++ LK +W+P L I+ +LL+I+ LL PNP L +
Sbjct: 66 APKVRFLTKIYHPAID-RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 136 AGKLLLEHYDDYSRRATMMTEIHAQ 160
+ +++ +A T+++A+
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 5/152 (3%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
Q R+ +EL L PP GI +++ + D++A I G A TPY G FK+++++ + +
Sbjct: 4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERY 63
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEICVNTL----KKDWNPDLGIKHILLTIKCLLIVPNP 128
P PP+ FLT I+HPN+D+ G IC++ L K W P L I +L +I+ L+ PNP
Sbjct: 64 PFEPPQIRFLTPIYHPNIDSA-GRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 122
Query: 129 ESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+ L + + + + A TE HA+
Sbjct: 123 DDPLMADISSEFKYNKPAFLKNARQWTEKHAR 154
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHV-CINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+R+ KE+Q + P I + ++E DI ++ GP GTPY G F V + + +P
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F TK++HPN+ + G IC++ L+ W+P + +K L++++ LL P P +
Sbjct: 65 KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDA 124
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHAQASKCSKLG 168
E + L + +++ A + T ++A + + G
Sbjct: 125 EVAQHYLRDRESFNKTAALWTRLYASETSNGQKG 158
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHV-CINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+R+ KE+Q + P I + ++E DI ++ GP GTPY G F V + + +P
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F TK++HPN+ + G IC++ LK W+P + +K L++++ LL P P +
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E + L + +++ A + T ++A
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP + Y G F + + ++P
Sbjct: 9 LKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F TKI+HPN+++ NG I ++ L+ W+P L + +LL+I LL PNP+ L
Sbjct: 69 KPPKIAFTTKIYHPNINS-NGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 127
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
+ ++ + Y+R A T+ +A
Sbjct: 128 DIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Query: 3 SMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYF 62
SMS L +R+ KEL D+T PP ++I + ++ I GP G+ Y G F
Sbjct: 38 SMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVF 97
Query: 63 KVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCL 122
+ + + +P PPK F T+I+H N++++ G IC++ LK +W+P L I +LL+I L
Sbjct: 98 FLDITFTPEYPFKPPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVLLSICSL 156
Query: 123 LIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
L NP L + + ++ R A T+ +A
Sbjct: 157 LTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 1/144 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ KEL ++T PP ++I + ++ I GP G+ Y G F + + S ++P
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PPK F T+I+H N++++ G IC++ LK +W+P L I +LL+I LL NP L
Sbjct: 66 PPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGS 124
Query: 136 AGKLLLEHYDDYSRRATMMTEIHA 159
+ + ++ R A T+ +A
Sbjct: 125 IATQYMTNRAEHDRMARQWTKRYA 148
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 15/149 (10%)
Query: 18 VSKELQDLTKTPPEGIHV-CINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVP 76
+ K+L D+ + P +G +++ DI + ++ GP T Y G+FK L +++P P
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 77 PKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKHILLTIKCLL 123
PK F+++I+HPN+D K G +C++ L ++ W P ++ ILL++ +L
Sbjct: 68 PKMKFISEIWHPNID-KEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISML 126
Query: 124 IVPNPESALNEEAGKLLLEHYDDYSRRAT 152
PN ES N +A K+ E+Y ++ ++
Sbjct: 127 TDPNFESPANVDAAKMQRENYAEFKKKVA 155
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 16 RRVSKELQDLTKTPPEGIHVCI-NEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+R+ KELQ L K P GI +E +I +I GP TPY++G F KL K++P
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKHILLTIKC 121
PPK F I HPN+ NGE+C++ L ++ W+P ++ ILL++
Sbjct: 67 SPPKLTFTPSILHPNI-YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMS 125
Query: 122 LLIVPNPESALNEEAGKLLLEHYDDYSRRATM 153
+L PN ES N +A L ++ ++ R+ +
Sbjct: 126 MLSEPNIESGANIDACILWRDNRPEFERQVKL 157
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 14/156 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV +G +C++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 69 DDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPN 127
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
+S EA + ++ +Y +R + AQA K
Sbjct: 128 IQSPAQAEAYTIYCQNRVEYEKR------VRAQAKK 157
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 9 NLSPQIIRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFK 63
N+S + R+++E + K P G + V D T + + I G GTP+ G FK
Sbjct: 2 NMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 64 VKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKC 121
+++L ++PS PPK F +FHPNV +G +C++ L+ KDW P + IK ILL I+
Sbjct: 62 LRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITIKQILLGIQE 120
Query: 122 LLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
LL PN + EA + ++ +Y +R + AQA K
Sbjct: 121 LLNEPNIQDPAQAEAYTIYCQNRVEYEKR------VRAQAKK 156
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 24 DLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLT 83
D TK G + +N D + GP GT Y G +KV + L ++P P F+
Sbjct: 10 DFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMN 69
Query: 84 KIFHPNVDTKNGEICVNTLKKDWNPDLGIKHIL-LTIKCLLIVPNPESALNEEAGKLLLE 142
K+ HPNVD +G +C++ + + W P + ++ + + LL PNP LN +A LL++
Sbjct: 70 KLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMK 129
Query: 143 HYDDYSRRATMMTEIHA 159
+ Y + +++A
Sbjct: 130 DKNIYEEKVKEYVKLYA 146
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 14/156 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV +G +C++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 69 DDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPN 127
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
++ EA + ++ +Y +R + AQA K
Sbjct: 128 IQAPAQAEAYTIYCQNRVEYEKR------VRAQAKK 157
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 20/170 (11%)
Query: 1 MNSMSNVENLSPQIIRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGT 55
+ SMS + + R+++E + K P G + V D T + + I G GT
Sbjct: 3 LGSMSGI------ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGT 56
Query: 56 PYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIK 113
P+ G FK+++L ++PS PPK F +FHPNV +G +C++ L+ KDW P + IK
Sbjct: 57 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITIK 115
Query: 114 HILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
ILL I+ LL PN + EA + ++ +Y +R + AQA K
Sbjct: 116 QILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR------VRAQAKK 159
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 14/156 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV +G +C++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 69 DDYPSSPPKCKFEPPLFHPNV-APSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPN 127
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
+ EA + ++ +Y +R + AQA K
Sbjct: 128 IQDPAQAEAYTIYCQNRVEYEKR------VRAQAKK 157
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 14/156 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 7 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 66
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV +G +C++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 67 DDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPN 125
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
+ EA + ++ +Y +R + AQA K
Sbjct: 126 IQDPAQAEAYTIYCQNRVEYEKR------VRAQAKK 155
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 14/156 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 8 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 67
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV +G +C++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 68 DDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPN 126
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
+ EA + ++ +Y +R + AQA K
Sbjct: 127 IQDPAQAEAYTIYCQNRVEYEKR------VRAQAKK 156
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 14/156 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV +G +C++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 69 DDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPN 127
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
+ EA + ++ +Y +R + AQA K
Sbjct: 128 IQDPAQAEAYTIYCQNRVEYEKR------VRAQAKK 157
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 14/156 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 65
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV +G +C++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 66 DDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPN 124
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
+ EA + ++ +Y +R + AQA K
Sbjct: 125 IQDPAQAEAYTIYCQNRVEYEKR------VRAQAKK 154
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 24/173 (13%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLS 69
SP + + EL+ L + P EG V ++E D+ + + I GP T Y GYFK +L
Sbjct: 5 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFP 64
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKHIL 116
++P PP FLTK++HPN+ + G++C++ L + WNP ++ IL
Sbjct: 65 IDYPYSPPAFRFLTKMWHPNI-YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 123
Query: 117 LTIKCLLIVPNPESALNEEAGKLLLE---------HYDDYSRRATMMTEIHAQ 160
L++ LL PN S N +A + + Y D R+ + T++ A+
Sbjct: 124 LSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAE 176
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 24/173 (13%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLS 69
SP + + EL+ L + P EG V ++E D+ + + I GP T Y GYFK +L
Sbjct: 2 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFP 61
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKHIL 116
++P PP FLTK++HPN+ + G++C++ L + WNP ++ IL
Sbjct: 62 IDYPYSPPAFRFLTKMWHPNI-YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 120
Query: 117 LTIKCLLIVPNPESALNEEAGKLLLE---------HYDDYSRRATMMTEIHAQ 160
L++ LL PN S N +A + + Y D R+ + T++ A+
Sbjct: 121 LSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAE 173
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 8 ENLSPQIIRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKL 66
E ++ ++R+ E + LT PPEGI +NEE+ + +A+I GP T + G F L
Sbjct: 4 EFMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAIL 63
Query: 67 LLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIK 113
++P PPK F ++FHPN+ +G +C++ L + W+P ++
Sbjct: 64 SFPLDYPLSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 122
Query: 114 HILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTE 156
ILL++ +L PN ES N +A K+ + + + + A + +
Sbjct: 123 KILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 165
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 2 NSMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQA----IIDGPAGTPY 57
NS S NLS IR + ++L L P ++V + + Q+ +I P Y
Sbjct: 19 NSSSIQPNLSAARIR-LKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYY 77
Query: 58 SNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILL 117
+ G L ++ +P PPK L KIFHPN+D K G +C+N L++DW+P L ++ I+
Sbjct: 78 NYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLK-GNVCLNILREDWSPALDLQSIIT 136
Query: 118 TIKCLLIVPNPESALNEEAGKLLLEHYDDYSR--RATM 153
+ L + PNP LN++A KLL E +++ R TM
Sbjct: 137 GLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTM 174
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 15 IRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
++R+ E + LT PPEGI +NEE+ + +A+I GP T + G F L ++P
Sbjct: 9 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 68
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKHILLTIK 120
PPK F ++FHPN+ +G +C++ L + W+P ++ ILL++
Sbjct: 69 LSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 127
Query: 121 CLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTE 156
+L PN ES N +A K+ + + + + A + +
Sbjct: 128 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 163
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 15 IRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
++R+ E + LT PPEGI +NEE+ + +A+I GP T + G F L ++P
Sbjct: 8 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 67
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKHILLTIK 120
PPK F ++FHPN+ +G +C++ L + W+P ++ ILL++
Sbjct: 68 LSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 126
Query: 121 CLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTE 156
+L PN ES N +A K+ + + + + A + +
Sbjct: 127 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 162
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 15 IRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
++R+ E + LT PPEGI +NEE+ + +A+I GP T + G F L ++P
Sbjct: 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKHILLTIK 120
PPK F ++FHPN+ +G +C++ L + W+P ++ ILL++
Sbjct: 65 LSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 123
Query: 121 CLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTE 156
+L PN ES N +A K+ + + + + A + +
Sbjct: 124 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 159
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 9 NLSPQIIRRVSKELQDLTKTPPEGIHV-CINEEDITDVQAIIDGPAGTPYSNGYFKVKLL 67
L P+ + ++L +L K P EG I++ D+ + +I GP T Y G FK L
Sbjct: 13 GLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT 72
Query: 68 LSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKH 114
K++P PPK F+T+I+HPNVD KNG++C++ L ++ W P ++
Sbjct: 73 FPKDYPLRPPKMKFITEIWHPNVD-KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVET 131
Query: 115 ILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRR 150
I++++ +L PN +S N +A K E + +R
Sbjct: 132 IMISVISMLADPNGDSPANVDAAKEWREDRNGEFKR 167
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 14/156 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 68
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHP V +G +C++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 69 DDYPSSPPKCKFEPPLFHPQV-YPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPN 127
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
+ EA + ++ +Y +R + AQA K
Sbjct: 128 IQDPAQAEAYTIYCQNRVEYEKR------VRAQAKK 157
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Query: 14 IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
+ +R+ +EL+ L + GI + +++ A +DGP T Y + +K+ L ++P
Sbjct: 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALN 133
PP F T +HPNVD ++G IC++ LK++W ++ ILL+++ LL PN S LN
Sbjct: 70 YKPPVVKFTTPCWHPNVD-QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLN 128
Query: 134 EEAGKL 139
+A +
Sbjct: 129 AQAADM 134
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 68/115 (59%)
Query: 1 MNSMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNG 60
+ S ++ N++ Q I+R KE+ +T I V + +E+ T+++ I GP TPY G
Sbjct: 48 IGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGG 107
Query: 61 YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHI 115
+++++ + + +P PPK F+TKI+HPN+ + G IC++ LK W + ++ +
Sbjct: 108 RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 162
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 87/157 (55%)
Query: 5 SNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKV 64
++ N++ Q I+R KE+ +T I V + +E+ T+++ I GP TPY G +++
Sbjct: 16 GSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 75
Query: 65 KLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLI 124
++ + + +P PPK F+TKI+HPN+ + G IC++ LK W + ++ +LL+++ LL
Sbjct: 76 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLA 135
Query: 125 VPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161
P+ + ++ + + + A + ++A A
Sbjct: 136 AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 172
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 87/157 (55%)
Query: 5 SNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKV 64
++ N++ Q I+R KE+ +T I V + +E+ T+++ I GP TPY G +++
Sbjct: 1 GSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 60
Query: 65 KLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLI 124
++ + + +P PPK F+TKI+HPN+ + G IC++ LK W + ++ +LL+++ LL
Sbjct: 61 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLA 120
Query: 125 VPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161
P+ + ++ + + + A + ++A A
Sbjct: 121 AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 157
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 85/153 (55%)
Query: 9 NLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLL 68
N++ Q I+R KE+ +T I V + +E+ T+++ I GP TPY G +++++ +
Sbjct: 4 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 63
Query: 69 SKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNP 128
+ +P PPK F+TKI+HPN+ + G IC++ LK W + ++ +LL+++ LL P
Sbjct: 64 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 123
Query: 129 ESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161
+ + ++ + + + A + ++A A
Sbjct: 124 DDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 14/158 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 65
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV +G + ++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 66 DDYPSSPPKCKFEPPLFHPNV-YPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPN 124
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCS 165
+ EA + ++ +Y +R + AQA K +
Sbjct: 125 IQDPAQAEAYTIYCQNRVEYEKR------VRAQAKKFA 156
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 85/153 (55%)
Query: 9 NLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLL 68
N++ Q I+R KE+ +T I V + +E+ T+++ I GP TPY G +++++ +
Sbjct: 7 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 66
Query: 69 SKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNP 128
+ +P PPK F+TKI+HPN+ + G IC++ LK W + ++ +LL+++ LL P
Sbjct: 67 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 126
Query: 129 ESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161
+ + ++ + + + A + ++A A
Sbjct: 127 DDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 14/158 (8%)
Query: 15 IRRVSKELQDLTKTPPEG-IHVCINEEDIT----DVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + V D T + + I G GTP+ G FK+++L
Sbjct: 6 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 65
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV +G + ++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 66 DDYPSSPPKCKFEPPLFHPNV-YPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEPN 124
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCS 165
+ EA + ++ +Y +R + AQA K +
Sbjct: 125 IQDPAQAEAYTIYXQNRVEYEKR------VRAQAKKFA 156
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 14 IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
+ +R+ +EL L + +GI +++ I G AGT Y + +K+ L +P
Sbjct: 31 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYP 90
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALN 133
P FLT +HPNVDT+ G I ++ LK+ W+ ++ ILL+I+ LL PN +S LN
Sbjct: 91 YNAPTVKFLTPCYHPNVDTQ-GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLN 149
Query: 134 EEAGKL 139
A +L
Sbjct: 150 THAAEL 155
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 51 GPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDL 110
GP GTPY G +KV++ L +P P F+ KIFHPN+D +G +C++ + + W
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 111 GIKHILLT-IKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
+ +I + + LL PNP LN +A + L ++Y ++ + +A
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Query: 37 INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPK-AFFLTKIFHPNVDTKNG 95
I+E D++ +AII GP+ TPY N F++ + + ++P PPK +F I H NV + G
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATG 101
Query: 96 EICVNTLK-KDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLL 140
EIC+N LK ++W P + H + + LL P +S L+ + G ++
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNII 147
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 15 IRRVSKELQDLTKTPPEGIHV-----CINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLS 69
++R+ +E + K P G + D+ +A I G GT ++ G + + +
Sbjct: 8 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 67
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
+PS PPK F +HPNV +G IC++ L +DW P + +K I+L ++ LL PN
Sbjct: 68 NEYPSKPPKVKFPAGFYHPNV-YPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPN 126
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
P S E A + + +Y ++ + + +++
Sbjct: 127 PNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 159
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 15 IRRVSKELQDLTKTPPEGIHV-----CINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLS 69
++R+ +E + K P G + D+ +A I G GT ++ G + + +
Sbjct: 6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 65
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
+PS PPK F +HPNV +G IC++ L +DW P + +K I+L ++ LL PN
Sbjct: 66 NEYPSKPPKVKFPAGFYHPNV-YPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPN 124
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
P S E A + + +Y ++ + + +++
Sbjct: 125 PNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 40 EDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICV 99
+ + + GP GTPY +G + + + L ++P P F +I HPNVD ++G +C+
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 100 NTLKKDWNPDLGIKHIL-LTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIH 158
+ + + W P +++I + + LL PNP LN +A LL H D A + +
Sbjct: 95 DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL--HADRVGFDALLREHVS 152
Query: 159 AQAS 162
A+
Sbjct: 153 THAT 156
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Query: 17 RVSKELQDLTKTPPEGIHVCINE-EDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
R+ K++ +L P+ + ++ +D+ + + +I P Y +G F + + +P
Sbjct: 10 RIQKDINELNL--PKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHD 66
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PPK T ++HPN+D + G +C+N L++DW P L I I+ ++ L + PNPE LN+E
Sbjct: 67 PPKVKCETXVYHPNIDLE-GNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKE 125
Query: 136 AGKLL 140
A ++L
Sbjct: 126 AAEVL 130
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Query: 37 INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPK-AFFLTKIFHPNVDTKNG 95
I+E D++ +AII GP+ TPY N F++ + + ++P PPK +F I H NV + G
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG 101
Query: 96 EICVNTLK-KDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLL 140
EIC+N LK ++W P + H + + LL P +S L+ + G ++
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAII 147
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Query: 37 INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPK-AFFLTKIFHPNVDTKNG 95
I+E D++ +AII GP+ TPY N F++ + + ++P PPK +F I H NV + G
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG 101
Query: 96 EICVNTLK-KDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLL 140
EIC+N LK ++W P + H + + LL P +S L+ + G ++
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNII 147
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 17 RVSKELQDLTKTPPEGIHVCINE-EDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
R+ K++ +L P+ + ++ +D+ + + +I P Y +G F + + +P
Sbjct: 30 RIQKDINELNL--PKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHD 86
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PPK T ++HPN+D + G + +N L++DW P L I I+ ++ L + PNPE LN+E
Sbjct: 87 PPKVKCETMVYHPNIDLE-GNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKE 145
Query: 136 AGKLL 140
A ++L
Sbjct: 146 AAEVL 150
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 16 RRVSKELQDLTKTPPEGIH-VCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
RR+ KEL+++ K + + ++E ++ Q +I P PY G F++++ +P
Sbjct: 7 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 65
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLK-KDWNPDLGIKHILLTIKCLLIVPNPESALN 133
PPK F TKI+HPN+D K G++C+ + ++W P ++ ++ L+ P PE L
Sbjct: 66 KPPKITFKTKIYHPNIDEK-GQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLR 124
Query: 134 EEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+ + + + + A T+ + +
Sbjct: 125 ADLAEEYSKDRKKFCKNAEEFTKKYGE 151
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 16 RRVSKELQDLTKTPPEGIH-VCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
RR+ KEL+++ K + + ++E ++ Q +I P PY G F++++ +P
Sbjct: 5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 63
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTL-KKDWNPDLGIKHILLTIKCLLIVPNPESALN 133
PPK F TKI+HPN+D K G++C+ + ++W P ++ ++ L+ P PE L
Sbjct: 64 KPPKITFKTKIYHPNIDEK-GQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLR 122
Query: 134 EEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+ + + + + A T+ + +
Sbjct: 123 ADLAEEYSKDRKKFCKNAEEFTKKYGE 149
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 17 RVSKELQDLTKTPPEGIHV--CINEE---DITDVQAIIDGPAGTPYSNGYFKVKLLLSKN 71
R+ +E + + P G + C + + D+ + + I G T + G +K+ + +
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 72 FPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKD--WNPDLGIKHILLTIKCLLIVPNPE 129
+P+ PPK F +FHPNV +G +C++ L ++ W P + IK ILL I+ LL PN
Sbjct: 74 YPTRPPKCRFTPPLFHPNV-YPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIA 132
Query: 130 SALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161
S EA + + +Y +R + AQA
Sbjct: 133 SPAQTEAYTMFKKDKVEYEKR------VRAQA 158
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVP 76
RV KEL+DL K PP + +++ V + P PY F +++ +P P
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 67
Query: 77 PKAFFLTKIFHPNVDTKNGEICVNTL-KKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
P F TKI+HPNVD +NG+IC+ + ++W P +L + L+ PN L +
Sbjct: 68 PMIKFTTKIYHPNVD-ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 126
Query: 136 AGKLLLEHYDDYSRRATMMT 155
LL ++ + + + A T
Sbjct: 127 LADLLTQNPELFRKNAEEFT 146
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVP 76
RV KEL+DL K PP + +++ V + P PY F +++ +P P
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 64
Query: 77 PKAFFLTKIFHPNVDTKNGEICVNTL-KKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
P F TKI+HPNVD +NG+IC+ + ++W P +L + L+ PN L +
Sbjct: 65 PMIKFTTKIYHPNVD-ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 123
Query: 136 AGKLLLEHYDDYSRRATMMT 155
LL ++ + + + A T
Sbjct: 124 LADLLTQNPELFRKNAEEFT 143
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVP 76
R+ KEL + K PP + ++ +I G T Y+N +K+K++ N+P P
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 77 PKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
P +FL K NG+IC++ L D+NP L I ++L+I +L
Sbjct: 84 PIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISML 130
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 18 VSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPP 77
+ ++ DL + +GI ED+ + + I+G + + F++ + + + PP
Sbjct: 28 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPP 87
Query: 78 KAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
F+T FHPNVD G+ C++ L + WN + + ILL ++ +L P E+ +N E
Sbjct: 88 VVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLE 147
Query: 136 AGKLLLE 142
A ++L++
Sbjct: 148 AARILVK 154
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITD--VQAIID--GPAGTPYSNGYFKVKLLLSKN 71
+R+ KEL L PP G+ +NE+ + + Q I+D G GT Y F++ S
Sbjct: 25 KRLQKELLALQNDPPPGM--TLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 82
Query: 72 FPSVPPKAFFLTK--IFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
+P P+ F + HP+V + NG IC++ L +DW+P L ++ + L+I +L
Sbjct: 83 YPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISML 135
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 21/141 (14%)
Query: 33 IHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTK-----IFH 87
+ V +EE + + +I GPA TPY+NG F+ + +++PS PP T F+
Sbjct: 100 VFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFN 159
Query: 88 PNVDTKNGEICVNTL-------KKDWNPDL-GIKHILLTIKCLLIVPNP-------ESAL 132
PN+ +G++C++ L ++ WNP +L++++ L++V P E +
Sbjct: 160 PNL-YNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSR 218
Query: 133 NEEAGKLLLEHYDDYSRRATM 153
+G YD R+AT+
Sbjct: 219 GTPSGTQSSREYDGNIRQATV 239
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVP 76
R+ KEL + PP + ++ +I G T Y+N +K+K++ ++P P
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 77 PKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
P +FL K NG+IC++ L D+NP L I ++L+I +L
Sbjct: 70 PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 116
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 57 YSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKK------DWNPDL 110
Y G F+ + + + VPPK LTKI+HPN+ T+ GEIC++ L++ W P
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI-TETGEICLSLLREHSIDGTGWAPTR 116
Query: 111 GIKHILLTIKCLLI-VPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCS 165
+K ++ + L + N + LN EA + L +D+ + + +A++ S
Sbjct: 117 TLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYARSGPSS 172
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 57 YSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKK------DWNPDL 110
Y G F+ + + + VPPK LTKI+HPN+ T+ GEIC++ L++ W P
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI-TETGEICLSLLREHSIDGTGWAPTR 116
Query: 111 GIKHILLTIKCLLI-VPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+K ++ + L + N + LN EA + L +D+ + + +A+
Sbjct: 117 TLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 41 DITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTK-NGEICV 99
+I + ++ GP TPY GY+ KL+ + FP PP + +T PN K N +C+
Sbjct: 42 NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCL 97
Query: 100 NTL---KKDWNPDLGIKHILLTIKCLLIVPNP 128
+ WNP + IL + ++ P
Sbjct: 98 SITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEED----ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
R+ +EL++ K +G E+D +T +I GP T Y N + +K+ +
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEI---CVNTLKKDWNPDLGIKHILLTIKCLLI 124
P PP F+TKI V++ NG + ++ L K W IK +L ++ L++
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-WQNSYSIKVVLQELRRLMM 152
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEED----ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
R+ +EL++ K +G E+D +T +I GP T Y N + +K+ +
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEI---CVNTLKKDWNPDLGIKHILLTIKCLLI 124
P PP F+TKI V++ NG + ++ L K W IK +L ++ L++
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-WQNSYSIKVVLQELRRLMM 142
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEED----ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
R+ +EL++ K +G E+D +T +I GP T Y N + +K+ +
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEI---CVNTLKKDWNPDLGIKHILLTIKCLLI 124
P PP F+TKI V++ NG + ++ L K W IK +L ++ L++
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-WQNSYSIKVVLQELRRLMM 124
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 8 ENLSPQIIRRVSKELQDLTKTP----PEGIHVCINEED---ITDVQAIIDGPAGTPYSNG 60
+ +S I+ R + L +L + EG+ + D +++ I G GT + N
Sbjct: 17 QGMSEVIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENR 76
Query: 61 YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLT 118
+ + + N+P PP F TKI VD G + N L K+WN + I+ IL++
Sbjct: 77 IYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNC-GRVIKNNLHILKNWNRNYTIETILIS 135
Query: 119 IK 120
++
Sbjct: 136 LR 137
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 5 SNVENLSPQ-IIRRVSKELQDLTKTP----PEGIHVCINEED---ITDVQAIIDGPAGTP 56
S ENL Q I+ R + L +L + EG+ + D +++ I G GT
Sbjct: 9 SGRENLYFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTV 68
Query: 57 YSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKH 114
+ N + + + N+P PP F TKI VD G + N L K+WN + I+
Sbjct: 69 FENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNC-GRVIKNNLHILKNWNRNYTIET 127
Query: 115 ILLTIK 120
IL++++
Sbjct: 128 ILISLR 133
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEED----ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
R+ +EL++ K +G E+D +T +I GP T Y N + +K+ +
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLI 124
P PP F+TKI ++ +G + ++ W IK +L ++ L++
Sbjct: 74 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMM 127
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEED----ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
R+ +EL++ K +G E+D +T +I GP T Y N + +K+ +
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLI 124
P PP F+TKI ++ +G + ++ W IK +L ++ L++
Sbjct: 68 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMM 121
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEED----ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
R+ +EL++ K +G E+D +T +I GP T Y N + +K+ +
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLI 124
P PP F+TKI ++ +G + ++ W IK +L ++ L++
Sbjct: 79 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMM 132
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 49 IDGPAGTPYSNG--YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDW 106
+ PA + Y +++ +L S ++P PP F+T ++ P V T G IC + W
Sbjct: 56 VKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLV-TGEGGICDRMVNDFW 114
Query: 107 NPDLGIKHILLTIKCLL 123
PD +H IK +L
Sbjct: 115 TPD---QHASDVIKLVL 128
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEED----ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
R+ +EL++ K +G E+D +T +I GP T Y N + +K+ +
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLI 124
P PP F+TKI ++ +G + ++ W IK +L ++ L++
Sbjct: 69 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMM 122
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 42 ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVN- 100
+T I GP + + N + + + N+P PPK F++KI P V+ GE+ +
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
Query: 101 -TLKKDWNPDLGIKHILLTIKCLLIVP 126
TL +DW ++ +LL ++ + P
Sbjct: 99 HTL-RDWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 42 ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVN- 100
+T I GP + + N + + + N+P PPK F++KI P V+ GE+ +
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
Query: 101 -TLKKDWNPDLGIKHILLTIKCLLIVP 126
TL +DW ++ +LL ++ + P
Sbjct: 98 HTL-RDWKRAYTMETLLLDLRKEMATP 123
>pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6K|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 347
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 262 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 321
Query: 65 KLL 67
KLL
Sbjct: 322 KLL 324
>pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex
pdb|2ASD|B Chain B, Oxog-Modified Insertion Ternary Complex
pdb|2ASJ|A Chain A, Oxog-Modified Preinsertion Binary Complex
pdb|2ASJ|B Chain B, Oxog-Modified Preinsertion Binary Complex
pdb|2ASL|A Chain A, Oxog-Modified Postinsertion Binary Complex
pdb|2ASL|B Chain B, Oxog-Modified Postinsertion Binary Complex
pdb|2ATL|A Chain A, Unmodified Insertion Ternary Complex
pdb|2ATL|B Chain B, Unmodified Insertion Ternary Complex
pdb|2AU0|A Chain A, Unmodified Preinsertion Binary Complex
pdb|2AU0|B Chain B, Unmodified Preinsertion Binary Complex
Length = 360
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 265 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 324
Query: 65 KLL 67
KLL
Sbjct: 325 KLL 327
>pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4
Length = 361
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 258 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 317
Query: 65 KLL 67
KLL
Sbjct: 318 KLL 320
>pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
pdb|2UVU|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
Length = 358
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 263 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 322
Query: 65 KLL 67
KLL
Sbjct: 323 KLL 325
>pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6H|B Chain B, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 348
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 263 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 322
Query: 65 KLL 67
KLL
Sbjct: 323 KLL 325
>pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
Length = 342
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 257 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 316
Query: 65 KLL 67
KLL
Sbjct: 317 KLL 319
>pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGP|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGP|B Chain B, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGQ|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|3T5H|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Cxg-3' Vs
13-Mer) With Dpo4 And Incoming Ddgt
pdb|3T5J|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Txg-3' Vs
13-Mer) With Dpo4 And Incoming Ddtp
pdb|3T5K|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Txg-3' Vs
14-Mer) With Dpo4 And Incoming Ddtp
pdb|3T5L|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Cxg-3' Vs
14-Mer) With Dpo4 And Incoming Ddgt
Length = 341
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 257 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 316
Query: 65 KLL 67
KLL
Sbjct: 317 KLL 319
>pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BQR|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BQU|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BR0|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2C22|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C28|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2D|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2E|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2R|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2J6S|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-Methylguanine Modified Dna, And Datp.
pdb|2J6T|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-Methylguanine Modified Dna, And Datp.
pdb|2J6U|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-methylguanine Modified Dna, And Dgtp.
pdb|2JEF|A Chain A, The Molecular Basis Of Selectivity Of Nucleotide
Triphosphate Incorporation Opposite O6-benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-state
And Pre-steady-state And X-ray Crystallography Of
Correct And Incorrect Pairing
pdb|2JEG|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-Benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-State
And Pre-Steady-State Kinetics And X-Ray Crystallography
Of Correct And Incorrect Pairing
pdb|2JEI|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-state
And Pre-steady-state Kinetics And X-ray Crystallography
Of Correct And Incorrect Pairing
pdb|2JEJ|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-Benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-State
And Pre-Steady-State Kinetics And X-Ray Crystallography
Of Correct And Incorrect Pairing
pdb|2V9W|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2V9W|B Chain B, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA2|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA2|B Chain B, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA3|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2W8K|A Chain A, Y-Family Dna Polymerase Dpo4 Bypassing N2-Naphthyl-Guanine
Adduct In Syn Orientation
pdb|2W8L|A Chain A, Y-Family Dna Polymerase Dpo4 Bypassing N2-Naphthyl-Guanine
Adduct In Anti Orientation
pdb|2W9A|A Chain A, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dgtp
pdb|2W9B|B Chain B, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna
pdb|2W9C|B Chain B, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dttp
pdb|2V4Q|A Chain A, Post-Insertion Complex Of The Y-Family Dna Polymerase Dpo4
With M1dg Containing Template Dna
pdb|2V4R|A Chain A, Non-Productive Complex Of The Y-Family Dna Polymerase Dpo4
With Dgtp Skipping The M1dg Adduct To Pair With The Next
Template Cytosine
pdb|2XC9|A Chain A, Binary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase And 1,N2-Ethenoguanine Modified Dna,
Magnesium Form
pdb|2XCA|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dgtp - Magnesium Form
pdb|2XCP|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dctp - Magnesium Form
pdb|2XCP|B Chain B, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dctp - Magnesium Form
pdb|4GC6|A Chain A, Crystal Structure Of Dpo4 In Complex With N-mc-damp
Opposite Dt
Length = 358
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 263 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 322
Query: 65 KLL 67
KLL
Sbjct: 323 KLL 325
>pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
pdb|1N48|A Chain A, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1N56|A Chain A, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1N56|B Chain B, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1RYR|A Chain A, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1RYS|A Chain A, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1RYS|B Chain B, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1S0M|A Chain A, Crystal Structure Of A Benzo[a]pyrene Diol Epoxide Adduct
In A Ternary Complex With A Dna Polymerase
pdb|1S0M|B Chain B, Crystal Structure Of A Benzo[a]pyrene Diol Epoxide Adduct
In A Ternary Complex With A Dna Polymerase
pdb|1S0N|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S0O|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S0O|B Chain B, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S10|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S97|A Chain A, Dpo4 With Gt Mismatch
pdb|1S97|B Chain B, Dpo4 With Gt Mismatch
pdb|1S97|C Chain C, Dpo4 With Gt Mismatch
pdb|1S97|D Chain D, Dpo4 With Gt Mismatch
pdb|1S9F|A Chain A, Dpo With At Matched
pdb|1S9F|B Chain B, Dpo With At Matched
pdb|1S9F|C Chain C, Dpo With At Matched
pdb|1S9F|D Chain D, Dpo With At Matched
pdb|2IA6|A Chain A, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2IA6|B Chain B, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2IBK|A Chain A, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2RDJ|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
pdb|2RDJ|B Chain B, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
pdb|2R8G|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2-Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|2R8H|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2- Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|2R8I|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2-Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|3FDS|A Chain A, Structural Insight Into Recruitment Of Translesion Dna
Polymerase Dpo4 To Sliding Clamp Pcna
pdb|3M9M|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
pdb|3M9N|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
pdb|3M9O|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
Length = 352
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 257 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 316
Query: 65 KLL 67
KLL
Sbjct: 317 KLL 319
>pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp
Opposite Dt
pdb|4GC7|B Chain B, Crystal Structure Of Dpo4 In Complex With S-mc-dadp
Opposite Dt
Length = 359
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 264 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 323
Query: 65 KLL 67
KLL
Sbjct: 324 KLL 326
>pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv
pdb|3PW0|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv And Incoming Datp
pdb|3PW2|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv And Incoming Dttp
pdb|3PW4|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Datp
pdb|3PW5|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dttp
pdb|3PW7|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dctp
pdb|3PW7|E Chain E, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dctp
Length = 347
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 263 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 322
Query: 65 KLL 67
KLL
Sbjct: 323 KLL 325
>pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna
pdb|2W9C|A Chain A, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dttp
Length = 358
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 263 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 322
Query: 65 KLL 67
KLL
Sbjct: 323 KLL 325
>pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt
pdb|3PR5|B Chain B, Dpo4 Y12a Mutant Incorporating Adp Opposite Template Dt
Length = 341
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 257 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 316
Query: 65 KLL 67
KLL
Sbjct: 317 KLL 319
>pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
pdb|2UVW|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
Length = 358
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 263 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 322
Query: 65 KLL 67
KLL
Sbjct: 323 KLL 325
>pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation
Catalyzed By A Template-Dependent Dna Polymerase
Length = 348
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 257 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 316
Query: 65 KLL 67
KLL
Sbjct: 317 KLL 319
>pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4
pdb|3QZ8|A Chain A, Tt-4 Ternary Complex Of Dpo4
Length = 360
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 257 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 316
Query: 65 KLL 67
KLL
Sbjct: 317 KLL 319
>pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite
An Oxog In Anti Conformation
pdb|3GIJ|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Syn)-A(Anti) And
Oxog(Anti)- A(Syn) Pairs
pdb|3GIJ|B Chain B, Dpo4 Extension Ternary Complex With Oxog(Syn)-A(Anti) And
Oxog(Anti)- A(Syn) Pairs
pdb|3GIK|A Chain A, Dpo4 Extension Ternary Complex With The Oxog(Anti)-C(Anti)
Pair
pdb|3GIL|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Anti)-T(Anti)
Pair
pdb|3GIL|B Chain B, Dpo4 Extension Ternary Complex With Oxog(Anti)-T(Anti)
Pair
pdb|3GIM|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Anti)-G(Syn) Pair
pdb|3KHG|A Chain A, Dpo4 Extension Ternary Complex With Misinserted A Opposite
The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHG|B Chain B, Dpo4 Extension Ternary Complex With Misinserted A Opposite
The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHH|A Chain A, Dpo4 Extension Ternary Complex With A C Base Opposite The
2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHH|B Chain B, Dpo4 Extension Ternary Complex With A C Base Opposite The
2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHL|A Chain A, Dpo4 Post-Extension Ternary Complex With Misinserted A
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHL|B Chain B, Dpo4 Post-Extension Ternary Complex With Misinserted A
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHR|A Chain A, Dpo4 Post-Extension Ternary Complex With The Correct C
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHR|B Chain B, Dpo4 Post-Extension Ternary Complex With The Correct C
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3RAQ|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 1-Methylguanine (Mg1) Lesion
pdb|3RAQ|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 1-Methylguanine (Mg1) Lesion
pdb|3RAX|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RAX|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB0|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB0|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB3|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB4|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB4|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB6|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB6|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBD|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBD|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBE|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBE|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 3-Methylcytosine (M3c) Lesion
Length = 341
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 257 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 316
Query: 65 KLL 67
KLL
Sbjct: 317 KLL 319
>pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4W|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4X|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #2
Length = 361
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 258 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 317
Query: 65 KLL 67
KLL
Sbjct: 318 KLL 320
>pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
Length = 352
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK-V 64
N+E + P + R + + L K P+ IHV ED+ V P G Y + V
Sbjct: 257 NLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESV 316
Query: 65 KLL 67
KLL
Sbjct: 317 KLL 319
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 106 WNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA---- 161
W PDL +K + L+ PN L+E G+ + Y Y ++ + + AQ
Sbjct: 333 WIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYA 392
Query: 162 -------SKCSKLGYKSSESRQSNIEN 181
+ + YK S +R+SN +N
Sbjct: 393 IIESQTETGTPYMLYKDSCNRKSNQQN 419
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 106 WNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA---- 161
W PDL +K + L+ PN L+E G+ + Y Y ++ + + AQ
Sbjct: 260 WIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYA 319
Query: 162 -------SKCSKLGYKSSESRQSNIEN 181
+ + YK S +R+SN +N
Sbjct: 320 IIESQTETGTPYMLYKDSCNRKSNQQN 346
>pdb|3BQO|A Chain A, Crystal Structure Of Trf1 Trfh Domain And Tin2 Peptide
Complex
Length = 211
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLL 68
++ +E+Q+L K + I VC+ + + + + + G P S+ FK KLL+
Sbjct: 110 KLHEEIQNLIKI--QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159
>pdb|1H6O|A Chain A, Dimerisation Domain From Human Trf1
Length = 204
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLL 68
++ +E+Q+L K + I VC+ + + + + + G P S+ FK KLL+
Sbjct: 106 KLHEEIQNLIKI--QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,732,278
Number of Sequences: 62578
Number of extensions: 236171
Number of successful extensions: 672
Number of sequences better than 100.0: 142
Number of HSP's better than 100.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 142
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)