Query psy15654
Match_columns 189
No_of_seqs 163 out of 1378
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:12:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 100.0 1.3E-55 2.9E-60 330.6 15.0 147 14-161 2-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1E-53 2.2E-58 326.9 17.7 149 11-160 3-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 3.3E-50 7.1E-55 309.9 18.9 147 14-161 3-149 (152)
4 PLN00172 ubiquitin conjugating 100.0 1.1E-49 2.3E-54 305.6 18.5 146 14-160 2-147 (147)
5 KOG0419|consensus 100.0 3.7E-50 8.1E-55 293.8 14.6 148 10-158 1-148 (152)
6 KOG0418|consensus 100.0 2.5E-46 5.5E-51 288.9 14.9 152 10-162 1-155 (200)
7 KOG0425|consensus 100.0 3E-45 6.4E-50 275.3 15.6 147 13-160 5-165 (171)
8 KOG0424|consensus 100.0 9.9E-45 2.1E-49 268.9 15.3 150 10-160 1-157 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 8.9E-44 1.9E-48 270.5 15.2 138 17-155 1-140 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 4.6E-43 1E-47 266.9 16.2 139 16-155 2-141 (141)
11 KOG0426|consensus 100.0 7.4E-43 1.6E-47 255.6 14.4 148 10-158 1-162 (165)
12 smart00212 UBCc Ubiquitin-conj 100.0 4.1E-42 9E-47 262.8 17.4 143 16-159 1-145 (145)
13 KOG0421|consensus 100.0 1.5E-41 3.3E-46 252.0 11.6 145 11-157 27-171 (175)
14 KOG0422|consensus 100.0 7.9E-40 1.7E-44 241.7 13.8 148 14-163 3-152 (153)
15 KOG0416|consensus 100.0 6E-39 1.3E-43 244.2 12.5 148 16-166 6-154 (189)
16 KOG0423|consensus 100.0 3.4E-39 7.4E-44 246.2 9.2 156 4-161 2-157 (223)
17 KOG0420|consensus 100.0 5.2E-37 1.1E-41 234.1 12.1 146 11-160 26-175 (184)
18 KOG0427|consensus 100.0 1.4E-31 3.1E-36 196.0 11.5 120 5-126 7-127 (161)
19 KOG0894|consensus 100.0 1.9E-29 4.1E-34 198.9 12.9 114 10-128 2-120 (244)
20 KOG0429|consensus 99.9 9.6E-26 2.1E-30 178.5 14.0 144 16-160 22-170 (258)
21 KOG0428|consensus 99.9 2.1E-22 4.6E-27 161.9 9.3 115 6-124 4-121 (314)
22 KOG0895|consensus 99.7 4.5E-18 9.7E-23 159.2 8.3 113 13-126 851-972 (1101)
23 KOG0895|consensus 99.7 2.7E-16 5.9E-21 147.4 11.4 121 5-126 274-405 (1101)
24 KOG0896|consensus 99.5 1.4E-13 3E-18 101.8 8.2 109 16-124 8-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.6 1.7E-07 3.7E-12 70.6 7.7 67 58-125 34-106 (133)
26 KOG0897|consensus 98.5 1.6E-07 3.4E-12 67.9 5.4 92 62-154 13-109 (122)
27 PF05743 UEV: UEV domain; Int 98.3 1E-06 2.3E-11 65.4 5.1 77 42-124 32-116 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.1 2.3E-06 5E-11 64.3 3.6 100 11-116 22-135 (161)
29 KOG2391|consensus 97.5 0.00076 1.7E-08 57.7 9.6 81 42-128 52-140 (365)
30 KOG3357|consensus 97.2 0.00042 9.1E-09 51.5 3.5 99 11-116 25-138 (167)
31 PF14462 Prok-E2_E: Prokaryoti 96.7 0.022 4.8E-07 42.3 9.0 90 31-124 12-120 (122)
32 PF05773 RWD: RWD domain; Int 96.3 0.01 2.3E-07 42.2 5.2 69 16-85 4-74 (113)
33 smart00591 RWD domain in RING 95.5 0.087 1.9E-06 37.1 7.1 27 58-84 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 94.9 0.039 8.4E-07 43.0 4.1 61 63-124 56-125 (162)
35 PF09765 WD-3: WD-repeat regio 86.1 1.1 2.5E-05 38.1 4.2 88 12-123 98-186 (291)
36 KOG0309|consensus 85.1 5.2 0.00011 38.4 8.2 73 11-84 418-491 (1081)
37 PF14460 Prok-E2_D: Prokaryoti 71.2 5.9 0.00013 31.0 3.7 46 82-131 89-137 (175)
38 KOG4018|consensus 68.1 18 0.00038 29.5 5.8 20 61-80 50-69 (215)
39 TIGR03737 PRTRC_B PRTRC system 65.7 10 0.00022 31.2 4.1 44 83-131 131-178 (228)
40 PF06113 BRE: Brain and reprod 60.6 23 0.0005 30.8 5.5 58 56-120 61-121 (333)
41 cd00421 intradiol_dioxygenase 48.9 25 0.00054 26.6 3.5 26 58-83 64-90 (146)
42 cd03457 intradiol_dioxygenase_ 46.0 28 0.00061 27.6 3.6 26 58-83 85-110 (188)
43 cd03459 3,4-PCD Protocatechuat 38.5 45 0.00097 25.7 3.5 26 58-83 71-101 (158)
44 KOG4445|consensus 37.1 40 0.00087 29.0 3.3 25 60-84 45-69 (368)
45 KOG1047|consensus 36.0 34 0.00073 31.9 2.8 29 55-84 248-279 (613)
46 KOG0177|consensus 33.7 17 0.00036 29.1 0.5 30 93-122 134-163 (200)
47 PF03366 YEATS: YEATS family; 33.4 1.4E+02 0.0031 20.3 5.1 42 43-86 2-43 (84)
48 PF00845 Gemini_BL1: Geminivir 31.6 96 0.0021 25.9 4.5 47 40-86 100-154 (276)
49 PF06113 BRE: Brain and reprod 31.2 60 0.0013 28.3 3.4 25 59-83 305-329 (333)
50 smart00340 HALZ homeobox assoc 30.7 49 0.0011 19.9 2.0 14 15-28 21-34 (44)
51 cd05845 Ig2_L1-CAM_like Second 28.8 1E+02 0.0022 21.6 3.8 38 57-98 16-53 (95)
52 KOG2851|consensus 27.3 1.2E+02 0.0026 26.8 4.6 34 89-122 331-369 (412)
53 PF04881 Adeno_GP19K: Adenovir 26.0 70 0.0015 24.0 2.6 21 38-58 43-63 (139)
54 TIGR02423 protocat_alph protoc 25.3 94 0.002 24.8 3.4 25 58-82 95-124 (193)
55 PF07809 RTP801_C: RTP801 C-te 24.9 2.8E+02 0.0062 20.3 6.9 61 10-73 16-82 (116)
56 PRK05414 urocanate hydratase; 24.9 2E+02 0.0044 26.7 5.8 28 134-161 282-309 (556)
57 PF01175 Urocanase: Urocanase; 23.7 1.5E+02 0.0032 27.5 4.7 28 134-161 272-299 (546)
58 TIGR01228 hutU urocanate hydra 23.2 2.3E+02 0.0051 26.2 5.8 28 134-161 273-300 (545)
59 cd03463 3,4-PCD_alpha Protocat 23.1 1.1E+02 0.0024 24.2 3.5 24 59-82 92-120 (185)
60 COG3866 PelB Pectate lyase [Ca 21.1 1.5E+02 0.0033 25.7 4.0 38 44-82 198-239 (345)
No 1
>KOG0417|consensus
Probab=100.00 E-value=1.3e-55 Score=330.65 Aligned_cols=147 Identities=39% Similarity=0.698 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccccCC
Q psy15654 14 IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTK 93 (189)
Q Consensus 14 ~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~ 93 (189)
+.+||.+||++|.+++++|+++.+.++|+++|+++|.||.+||||||+|.+.|.||++||++||+|+|.|+||||||+ .
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-S 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-c
Confidence 346999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Q psy15654 94 NGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161 (189)
Q Consensus 94 ~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 161 (189)
+|.||+|+|+++|+|+++|..||++|++||.+||+++|++.++|.+|+.|+.+|.++||+||++||+.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999973
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-53 Score=326.86 Aligned_cols=149 Identities=40% Similarity=0.767 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEEecCC-CcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeeccccccc
Q psy15654 11 SPQIIRRVSKELQDLTKTPPEGIHVCINEE-DITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPN 89 (189)
Q Consensus 11 s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~-d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 89 (189)
+..+.+||++|+++|++++++|+++.|..+ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|+|+|||||
T Consensus 3 s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN 82 (153)
T COG5078 3 SPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN 82 (153)
T ss_pred chhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence 344899999999999999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Q psy15654 90 VDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160 (189)
Q Consensus 90 I~~~~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 160 (189)
|| .+|+||||+|+++|+|+++|.+||++|+++|.+||.++|+|.|||.+|++|+++|.++||+++++||.
T Consensus 83 V~-~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 83 VD-PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred cC-CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.3e-50 Score=309.86 Aligned_cols=147 Identities=37% Similarity=0.755 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccccCC
Q psy15654 14 IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTK 93 (189)
Q Consensus 14 ~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~ 93 (189)
+.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ .
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~-~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNID-K 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceEC-C
Confidence 569999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Q psy15654 94 NGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161 (189)
Q Consensus 94 ~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 161 (189)
+|.||+++|+++|+|++||.+||.+|+++|.+|++++|+|.+||++|++|++.|.++|++|+++||..
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999983
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-49 Score=305.57 Aligned_cols=146 Identities=36% Similarity=0.681 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccccCC
Q psy15654 14 IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTK 93 (189)
Q Consensus 14 ~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~ 93 (189)
+.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~-~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN-S 80 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC-C
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Q psy15654 94 NGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160 (189)
Q Consensus 94 ~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 160 (189)
+|.||+++|.++|+|++||.+||.+|+++|.+|++++|+|.+||++|.+|+++|.++|++|+++||.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999983
No 5
>KOG0419|consensus
Probab=100.00 E-value=3.7e-50 Score=293.81 Aligned_cols=148 Identities=36% Similarity=0.712 Sum_probs=144.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeeccccccc
Q psy15654 10 LSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPN 89 (189)
Q Consensus 10 ~s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 89 (189)
|+..|.+||++++++|+++++.||+..|.++|+..|.++|+||.+|||+||+|++.|.|+++||.+||.|+|++.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHH
Q psy15654 90 VDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIH 158 (189)
Q Consensus 90 I~~~~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~ 158 (189)
|+ .+|.+|||+|...|+|.+++..||.+||+||.+||+++|+|.+||++|++++.+|.++++..+.+.
T Consensus 81 vy-a~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 81 VY-ADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred cC-CCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 99 999999999999999999999999999999999999999999999999999999999999987764
No 6
>KOG0418|consensus
Probab=100.00 E-value=2.5e-46 Score=288.87 Aligned_cols=152 Identities=30% Similarity=0.676 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHhhcCC---CCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccc
Q psy15654 10 LSPQIIRRVSKELQDLTKTP---PEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIF 86 (189)
Q Consensus 10 ~s~~~~kRL~~E~~~l~~~~---~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 86 (189)
|+. +.+||++|.+++.+++ ..||.++..++|+.+..+.|.||++||||||+|.++|++|++|||+||+|+|.|+||
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 344 7899999999999987 689999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcccc
Q psy15654 87 HPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQAS 162 (189)
Q Consensus 87 HPnI~~~~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~ 162 (189)
||||...+|.||||+|++.|.+++||..+|++||++|..|++.+|.+...|++|.++++.|.++||.||..||..+
T Consensus 80 HPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGR 155 (200)
T ss_pred cCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC
Confidence 9999988999999999999999999999999999999999999999999999999999999999999999999986
No 7
>KOG0425|consensus
Probab=100.00 E-value=3e-45 Score=275.34 Aligned_cols=147 Identities=31% Similarity=0.588 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEecC-CCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeeccccccccc
Q psy15654 13 QIIRRVSKELQDLTKTPPEGIHVCINE-EDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVD 91 (189)
Q Consensus 13 ~~~kRL~~E~~~l~~~~~~gi~~~~~~-~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 91 (189)
++..-|+++|++|++.+..|+.+...+ .|+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|+|+||||||+
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy 84 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY 84 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence 466789999999999999999998665 4999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeccCCC-------------CCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHH
Q psy15654 92 TKNGEICVNTLK-------------KDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIH 158 (189)
Q Consensus 92 ~~~G~iCl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~ 158 (189)
.+|++|++||. +.|.|.+|+++||++|.+||.+||.++|+|.|||+.|++++++|.+++++++++.
T Consensus 85 -~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 85 -EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred -CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999999984 6899999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q psy15654 159 AQ 160 (189)
Q Consensus 159 a~ 160 (189)
..
T Consensus 164 ~e 165 (171)
T KOG0425|consen 164 QE 165 (171)
T ss_pred HH
Confidence 43
No 8
>KOG0424|consensus
Probab=100.00 E-value=9.9e-45 Score=268.94 Aligned_cols=150 Identities=30% Similarity=0.543 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeEEEecC-----CCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecc
Q psy15654 10 LSPQIIRRVSKELQDLTKTPPEGIHVCINE-----EDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTK 84 (189)
Q Consensus 10 ~s~~~~kRL~~E~~~l~~~~~~gi~~~~~~-----~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 84 (189)
||..++.||+.|-+.|.++.|-|+++.|.. .|+..|+|.|.|+.+|+||||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 466778999999999999999999998764 378999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeeeccCCCCC--CCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Q psy15654 85 IFHPNVDTKNGEICVNTLKKD--WNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160 (189)
Q Consensus 85 i~HPnI~~~~G~iCl~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 160 (189)
+|||||+ .+|.|||++|.++ |+|++||.+||.+||.||.+||+.+|+|.||...|.+|+..|.++||.++++||.
T Consensus 81 l~HPNVy-psgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVY-PSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcC-CCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 9999999 9999999999754 9999999999999999999999999999999999999999999999999999985
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=8.9e-44 Score=270.46 Aligned_cols=138 Identities=43% Similarity=0.834 Sum_probs=128.9
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCC-CcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccccCCCC
Q psy15654 17 RVSKELQDLTKTPPEGIHVCINEE-DITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNG 95 (189)
Q Consensus 17 RL~~E~~~l~~~~~~gi~~~~~~~-d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~~G 95 (189)
||++|++++++.++.|+.+.+.++ |+.+|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 899999999999999999999886 999999999999999999999999999999999999999999999999999 999
Q ss_pred eeeccCCCC-CCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Q psy15654 96 EICVNTLKK-DWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMT 155 (189)
Q Consensus 96 ~iCl~~l~~-~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~ 155 (189)
.||+++|.. .|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++++++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999984 599999999999999999999999999999999999999999999999984
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=4.6e-43 Score=266.91 Aligned_cols=139 Identities=42% Similarity=0.821 Sum_probs=135.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccccCCCC
Q psy15654 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNG 95 (189)
Q Consensus 16 kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~~G 95 (189)
+||++|++++++.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.+++|||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eeeccCCCCC-CCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Q psy15654 96 EICVNTLKKD-WNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMT 155 (189)
Q Consensus 96 ~iCl~~l~~~-W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~ 155 (189)
.||+++|... |+|+++|.+||.+|+++|.+|+.++|+|.+||.+|++|+++|.++|++|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999876 99999999999999999999999999999999999999999999999985
No 11
>KOG0426|consensus
Probab=100.00 E-value=7.4e-43 Score=255.64 Aligned_cols=148 Identities=30% Similarity=0.608 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeEEEec-CCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccc
Q psy15654 10 LSPQIIRRVSKELQDLTKTPPEGIHVCIN-EEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHP 88 (189)
Q Consensus 10 ~s~~~~kRL~~E~~~l~~~~~~gi~~~~~-~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 88 (189)
|+..|+|||++||++|-.++|+||.+.|. +||+++|.|.|.||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 56789999999999999999999999875 57899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeeeccCCC-------------CCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Q psy15654 89 NVDTKNGEICVNTLK-------------KDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMT 155 (189)
Q Consensus 89 nI~~~~G~iCl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~ 155 (189)
||+ .+|+||+++|. +.|+|.++++.||+++.+||.+||-++++|.+|+.++++++++|.+.|+..+
T Consensus 81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lv 159 (165)
T KOG0426|consen 81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLV 159 (165)
T ss_pred ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence 999 99999999984 6999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q psy15654 156 EIH 158 (189)
Q Consensus 156 ~~~ 158 (189)
++.
T Consensus 160 rKt 162 (165)
T KOG0426|consen 160 RKT 162 (165)
T ss_pred HHh
Confidence 874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4.1e-42 Score=262.81 Aligned_cols=143 Identities=41% Similarity=0.784 Sum_probs=138.6
Q ss_pred HHHHHHHHHhhcCCCCCeEEEecCC-CcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccccCCC
Q psy15654 16 RRVSKELQDLTKTPPEGIHVCINEE-DITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKN 94 (189)
Q Consensus 16 kRL~~E~~~l~~~~~~gi~~~~~~~-d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~~ 94 (189)
+||++|++++++.++.|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+ .+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~-~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD-SS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC-CC
Confidence 5999999999999999999988775 999999999999999999999999999999999999999999999999999 79
Q ss_pred CeeeccCCC-CCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q psy15654 95 GEICVNTLK-KDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159 (189)
Q Consensus 95 G~iCl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 159 (189)
|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|.++++.|.++|++++++++
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 89999999999999999999999999999999999999999999999999999875
No 13
>KOG0421|consensus
Probab=100.00 E-value=1.5e-41 Score=251.99 Aligned_cols=145 Identities=32% Similarity=0.566 Sum_probs=139.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccc
Q psy15654 11 SPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNV 90 (189)
Q Consensus 11 s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI 90 (189)
...+.|||+.|+..|.-...+||++.|..||++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|+|+|+.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Q psy15654 91 DTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEI 157 (189)
Q Consensus 91 ~~~~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~ 157 (189)
| ..|.||||||++.|+..+++..||++||+||-+||..+|+|..||+++. |.++|++.+.++-++
T Consensus 107 D-~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 107 D-LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred c-ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 9 9999999999999999999999999999999999999999999999998 999999998877554
No 14
>KOG0422|consensus
Probab=100.00 E-value=7.9e-40 Score=241.67 Aligned_cols=148 Identities=26% Similarity=0.547 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeE-EEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccccC
Q psy15654 14 IIRRVSKELQDLTKTPPEGIH-VCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDT 92 (189)
Q Consensus 14 ~~kRL~~E~~~l~~~~~~gi~-~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~ 92 (189)
+.+||.+|+.+|++++...+. +..++.|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD- 80 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD- 80 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC-
Confidence 568999999999998877554 4456789999999999 8889999999999999999999999999999999999999
Q ss_pred CCCeeeccCCC-CCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccccc
Q psy15654 93 KNGEICVNTLK-KDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163 (189)
Q Consensus 93 ~~G~iCl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~ 163 (189)
+.|.||+.++. ++|.|+..+.+||+.+.+++.+|++++|++.|+|..|.+|+..|.++|.++|++|+..+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~rp 152 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKRP 152 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcCC
Confidence 88999999985 899999999999999999999999999999999999999999999999999999998653
No 15
>KOG0416|consensus
Probab=100.00 E-value=6e-39 Score=244.24 Aligned_cols=148 Identities=29% Similarity=0.585 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccccCCCC
Q psy15654 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNG 95 (189)
Q Consensus 16 kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~~G 95 (189)
|||..|+.+|.. ++..|...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|+++|||||||..+|
T Consensus 6 rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SG 82 (189)
T KOG0416|consen 6 RRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASG 82 (189)
T ss_pred cchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccC
Confidence 788888888876 46788888899999999999999999999999999999999999999999999999999998899
Q ss_pred eeeccCCCCCCCCcccHHHHHHH-HHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcccccCCC
Q psy15654 96 EICVNTLKKDWNPDLGIKHILLT-IKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCSK 166 (189)
Q Consensus 96 ~iCl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~~~~ 166 (189)
.||||.+...|+|.+.+..|+.. |-.||..||+.+|+|.+||.+|.++++.|.+++++++++||.+.....
T Consensus 83 sVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~~~~ 154 (189)
T KOG0416|consen 83 SVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEALKE 154 (189)
T ss_pred ccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhhhcc
Confidence 99999999999999999999965 577999999999999999999999999999999999999999875444
No 16
>KOG0423|consensus
Probab=100.00 E-value=3.4e-39 Score=246.19 Aligned_cols=156 Identities=70% Similarity=1.214 Sum_probs=153.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeec
Q psy15654 4 MSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLT 83 (189)
Q Consensus 4 ~s~~~~~s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 83 (189)
.|| +++.+..++.+.+|++.+...||.||.|.+.++|++...+.|.||.+|||++|.|++.+.+..+||.+||+-.|+|
T Consensus 2 ~sn-enlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlT 80 (223)
T KOG0423|consen 2 ASN-ENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLT 80 (223)
T ss_pred Ccc-cCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeee
Confidence 366 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Q psy15654 84 KIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161 (189)
Q Consensus 84 ~i~HPnI~~~~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 161 (189)
+||||||- .+|.||.+.|+.+|.|..+|..||..|+.||..|++++.+|.+|+.++.+++++|.++||.+|..||++
T Consensus 81 KIFHPNVa-aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 81 KIFHPNVA-ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred eeccCCcc-cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 99999998 999999999999999999999999999999999999999999999999999999999999999999987
No 17
>KOG0420|consensus
Probab=100.00 E-value=5.2e-37 Score=234.08 Aligned_cols=146 Identities=28% Similarity=0.596 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEE--ecCCCcc--eEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccc
Q psy15654 11 SPQIIRRVSKELQDLTKTPPEGIHVC--INEEDIT--DVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIF 86 (189)
Q Consensus 11 s~~~~kRL~~E~~~l~~~~~~gi~~~--~~~~d~~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 86 (189)
.+.++-||++|..++. -|+++... ...+++. +.+++|. |.++.|.||.|.|.+.+|+.||+.||+|+++|+||
T Consensus 26 ~s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 26 VSAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred ccHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 3445558888888875 45555532 2244444 5999999 99999999999999999999999999999999999
Q ss_pred cccccCCCCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Q psy15654 87 HPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160 (189)
Q Consensus 87 HPnI~~~~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 160 (189)
||||| .+|.|||+||+++|+|+.+|.+|+.+++.||.+|+++||+|.+||..+.+|++.|...||.....++-
T Consensus 103 HPNId-~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 103 HPNID-LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred cCCcC-CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999988766654
No 18
>KOG0427|consensus
Probab=99.97 E-value=1.4e-31 Score=195.99 Aligned_cols=120 Identities=24% Similarity=0.562 Sum_probs=114.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecc
Q psy15654 5 SNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTK 84 (189)
Q Consensus 5 s~~~~~s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 84 (189)
.+.+.++..+.+||++|+.+|+.++|.|+... ..||+..|.+.+.|.+||.|+|.+|.+.++||+.||++.|.|-|+.+
T Consensus 7 ~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 7 PSRKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 36678999999999999999999999999987 56899999999999999999999999999999999999999999999
Q ss_pred c-ccccccCCCCeeeccCCCCCCCCcccHHHHHHHHHHhhcCC
Q psy15654 85 I-FHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVP 126 (189)
Q Consensus 85 i-~HPnI~~~~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p 126 (189)
+ .||+|+ ++|.|||++|.+.|+|++++.+|.++|.+||.+.
T Consensus 86 ~P~HPHiY-SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 86 APLHPHIY-SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred CCCCCcee-cCCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence 7 899999 9999999999999999999999999999999853
No 19
>KOG0894|consensus
Probab=99.96 E-value=1.9e-29 Score=198.90 Aligned_cols=114 Identities=28% Similarity=0.566 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecc--ccc
Q psy15654 10 LSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTK--IFH 87 (189)
Q Consensus 10 ~s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~H 87 (189)
.+.+|+|||++||+.|.++|.++|.+.|.++|+++||.+|.||++|||+||.|+.+|.||.+||++||.|+++|| .|-
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999997 454
Q ss_pred ccccCCCCeeeccCC---CCCCCCcccHHHHHHHHHHhhcCCCC
Q psy15654 88 PNVDTKNGEICVNTL---KKDWNPDLGIKHILLTIKCLLIVPNP 128 (189)
Q Consensus 88 PnI~~~~G~iCl~~l---~~~W~p~~~i~~iL~~i~~ll~~p~~ 128 (189)
+| -++||++- .+.|.|.++|++||.+|.+.|.+-.+
T Consensus 82 tn-----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 82 TN-----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred cC-----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 44 48999876 48999999999999999998885443
No 20
>KOG0429|consensus
Probab=99.94 E-value=9.6e-26 Score=178.51 Aligned_cols=144 Identities=22% Similarity=0.346 Sum_probs=131.8
Q ss_pred HHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCC--CCCeeEeecccccccccCC
Q psy15654 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS--VPPKAFFLTKIFHPNVDTK 93 (189)
Q Consensus 16 kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnI~~~ 93 (189)
.-|+.||..+.+.+.+||+|.|+-.|-+.|.++|++.. +.|.||+|+|+|.+|++||. .-|+|.|.+.+|||+|.+.
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 45788888999899999999999999999999999655 59999999999999999995 6899999999999999999
Q ss_pred CCeeeccCCCCCCCCc-ccHHHHHHHHHHhhcCCCCCCc--cCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Q psy15654 94 NGEICVNTLKKDWNPD-LGIKHILLTIKCLLIVPNPESA--LNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160 (189)
Q Consensus 94 ~G~iCl~~l~~~W~p~-~~i~~iL~~i~~ll~~p~~~~p--~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 160 (189)
++.+|+......|+-. .+|++||..+|.+|++|+...+ .|++|+.+|.+++++|.++|+++++....
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRS 170 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999877779988 5799999999999999988766 59999999999999999999999987653
No 21
>KOG0428|consensus
Probab=99.88 E-value=2.1e-22 Score=161.90 Aligned_cols=115 Identities=24% Similarity=0.479 Sum_probs=100.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeeccc
Q psy15654 6 NVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKI 85 (189)
Q Consensus 6 ~~~~~s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 85 (189)
...|.-+.+.|||++|.++|+ +|...+.+.|.+||+++||++|.||.+|-|+||+|+.+|.||.+||++||.+-.+|+-
T Consensus 4 erYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN 82 (314)
T KOG0428|consen 4 ERYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN 82 (314)
T ss_pred hhhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC
Confidence 345667789999999999998 6777888899999999999999999999999999999999999999999999999864
Q ss_pred ccccccCCCCeeeccCCC---CCCCCcccHHHHHHHHHHhhc
Q psy15654 86 FHPNVDTKNGEICVNTLK---KDWNPDLGIKHILLTIKCLLI 124 (189)
Q Consensus 86 ~HPnI~~~~G~iCl~~l~---~~W~p~~~i~~iL~~i~~ll~ 124 (189)
-.-- .+-+|||+|-+ +.|.|+|+|...|+.|...|-
T Consensus 83 GRFE---~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 83 GRFE---VNKKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred Ccee---eCceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 2222 34679999874 899999999999999998775
No 22
>KOG0895|consensus
Probab=99.74 E-value=4.5e-18 Score=159.21 Aligned_cols=113 Identities=31% Similarity=0.637 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecc--cccccc
Q psy15654 13 QIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTK--IFHPNV 90 (189)
Q Consensus 13 ~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnI 90 (189)
+..+..+.|++-|..+.|.||.|...++.+..+.++|.|+.+|||+.|.|.|.|.||++||.+||.|...+. .++||.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 556677788888888999999999999999899999999999999999999999999999999999999886 689999
Q ss_pred cCCCCeeeccCCC-------CCCCCcccHHHHHHHHHHhhcCC
Q psy15654 91 DTKNGEICVNTLK-------KDWNPDLGIKHILLTIKCLLIVP 126 (189)
Q Consensus 91 ~~~~G~iCl~~l~-------~~W~p~~~i~~iL~~i~~ll~~p 126 (189)
+ ..|+|||++|. +-|.|+-+|.+||.+||.|+...
T Consensus 931 y-~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~ 972 (1101)
T KOG0895|consen 931 Y-EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNE 972 (1101)
T ss_pred c-cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccc
Confidence 9 99999999995 78999889999999999987743
No 23
>KOG0895|consensus
Probab=99.67 E-value=2.7e-16 Score=147.42 Aligned_cols=121 Identities=32% Similarity=0.654 Sum_probs=112.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecc
Q psy15654 5 SNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTK 84 (189)
Q Consensus 5 s~~~~~s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 84 (189)
...+..+....+|+.+|++-+.++.|.|+.+.+.+.++...+++|.||.+|||++|+|.|.|.||..||..||.|.++|.
T Consensus 274 ~~~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~ 353 (1101)
T KOG0895|consen 274 KSSKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTG 353 (1101)
T ss_pred CCCCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeec
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---cccccccCCCCeeeccCCC-------CCCCCc-ccHHHHHHHHHHhhcCC
Q psy15654 85 ---IFHPNVDTKNGEICVNTLK-------KDWNPD-LGIKHILLTIKCLLIVP 126 (189)
Q Consensus 85 ---i~HPnI~~~~G~iCl~~l~-------~~W~p~-~~i~~iL~~i~~ll~~p 126 (189)
.+.||.+ .+|+||+++|. +.|+|. .+|.++|.+||.++.+-
T Consensus 354 ~~~R~nPNlY-n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 354 GGVRLNPNLY-NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cceeecCCcc-cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 6899999 89999999983 789999 78999999999988754
No 24
>KOG0896|consensus
Probab=99.49 E-value=1.4e-13 Score=101.84 Aligned_cols=109 Identities=26% Similarity=0.423 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcCCCCCe-EEEecC-CC--cceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeeccccccccc
Q psy15654 16 RRVSKELQDLTKTPPEGI-HVCINE-ED--ITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVD 91 (189)
Q Consensus 16 kRL~~E~~~l~~~~~~gi-~~~~~~-~d--~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 91 (189)
.||.+|+..-++.-.+|. +....+ +| +..|...|.||+.|+||+-+|.++|...++||..||+|+|.++|--+.|+
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 579999988876654443 333332 33 56899999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeccCC--CCCCCCcccHHHHHHHHHHhhc
Q psy15654 92 TKNGEICVNTL--KKDWNPDLGIKHILLTIKCLLI 124 (189)
Q Consensus 92 ~~~G~iCl~~l--~~~W~p~~~i~~iL~~i~~ll~ 124 (189)
..+|.|.-..+ -.+|+-.+++..||..++.++.
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred cCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 78888876433 3899999999999999986553
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.61 E-value=1.7e-07 Score=70.58 Aligned_cols=67 Identities=25% Similarity=0.595 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCCCCCCCCeeEeeccc---ccccccCCCCeeec---cCCCCCCCCcccHHHHHHHHHHhhcC
Q psy15654 58 SNGYFKVKLLLSKNFPSVPPKAFFLTKI---FHPNVDTKNGEICV---NTLKKDWNPDLGIKHILLTIKCLLIV 125 (189)
Q Consensus 58 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnI~~~~G~iCl---~~l~~~W~p~~~i~~iL~~i~~ll~~ 125 (189)
.|+.|.+.|.||++||..||.|....+. +=|||+ .+|.+|+ ...-+.|.|...+..+|..+..+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999888654 689999 7999999 77779999999999999999999873
No 26
>KOG0897|consensus
Probab=98.54 E-value=1.6e-07 Score=67.93 Aligned_cols=92 Identities=15% Similarity=0.336 Sum_probs=66.4
Q ss_pred EEEEEecCCCCCCCCCeeEeecccccccccCCCCeeeccCCC-CCCCCcccHHHHHHHHHHhhcCCC--CCCccCHHHHH
Q psy15654 62 FKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK-KDWNPDLGIKHILLTIKCLLIVPN--PESALNEEAGK 138 (189)
Q Consensus 62 f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~~G~iCl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~--~~~p~n~~aa~ 138 (189)
.-+.+.|+++||+.||.+|...|+-.-..-..+|.||+.+|. ++|+.+++|+.++.+|.+++..-. ...+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 456788999999999999988876444333378999999994 899999999999999999987654 3445544433
Q ss_pred HHHH--CHHHHHHHHHHH
Q psy15654 139 LLLE--HYDDYSRRATMM 154 (189)
Q Consensus 139 ~~~~--~~~~f~~~a~~~ 154 (189)
+|.. --+.|+..++-+
T Consensus 92 ~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 4433 234455555444
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.31 E-value=1e-06 Score=65.37 Aligned_cols=77 Identities=19% Similarity=0.468 Sum_probs=53.4
Q ss_pred cceEEEEEeCCCCCCcCCCEE--EEEEecCCCCCCCCCeeEeeccc-----ccccccCCCCeeeccCCCCCCCC-cccHH
Q psy15654 42 ITDVQAIIDGPAGTPYSNGYF--KVKLLLSKNFPSVPPKAFFLTKI-----FHPNVDTKNGEICVNTLKKDWNP-DLGIK 113 (189)
Q Consensus 42 ~~~w~~~i~Gp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HPnI~~~~G~iCl~~l~~~W~p-~~~i~ 113 (189)
+....++|. -.|.|..| .+.|.+|.+||..||.|...... -+.+|| .+|+|.+..| ++|.+ ..+|.
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~~~s~L~ 105 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--TTTS-HH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCCCCCCHH
Confidence 444555553 35888887 56777899999999999775432 244999 9999999888 68887 67899
Q ss_pred HHHHHHHHhhc
Q psy15654 114 HILLTIKCLLI 124 (189)
Q Consensus 114 ~iL~~i~~ll~ 124 (189)
+++..+...|.
T Consensus 106 ~lv~~l~~~F~ 116 (121)
T PF05743_consen 106 DLVQELQAVFS 116 (121)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHHHh
Confidence 99999988875
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.13 E-value=2.3e-06 Score=64.34 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHhhc-------CCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCE--EEEEEecCCCCCCCCCeeEe
Q psy15654 11 SPQIIRRVSKELQDLTK-------TPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGY--FKVKLLLSKNFPSVPPKAFF 81 (189)
Q Consensus 11 s~~~~kRL~~E~~~l~~-------~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~--f~~~i~fp~~YP~~pP~v~f 81 (189)
-.....||..||..|-+ +-...+.++ ++.+=+.|.+..-- .++--. |.+++.+|..||..||.+..
T Consensus 22 ~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 22 GDLWVQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceec
Confidence 36778999999998754 122344454 23334555443320 122222 56666779999999999987
Q ss_pred eccc-ccccccCCCCeeeccCCC----CCCCCcccHHHHH
Q psy15654 82 LTKI-FHPNVDTKNGEICVNTLK----KDWNPDLGIKHIL 116 (189)
Q Consensus 82 ~t~i-~HPnI~~~~G~iCl~~l~----~~W~p~~~i~~iL 116 (189)
..-- -..-.+ .+|+|||+... ..=.|.++|...|
T Consensus 97 PeLdGKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 97 PELDGKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GGGTTT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred cccCCchhhhh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence 4211 111223 78999998753 3446778888776
No 29
>KOG2391|consensus
Probab=97.54 E-value=0.00076 Score=57.67 Aligned_cols=81 Identities=21% Similarity=0.488 Sum_probs=61.7
Q ss_pred cceEEEEEeCCCCCCcCCCEEE--EEEecCCCCCCCCCeeEeecc-----cccccccCCCCeeeccCCCCCCCCc-ccHH
Q psy15654 42 ITDVQAIIDGPAGTPYSNGYFK--VKLLLSKNFPSVPPKAFFLTK-----IFHPNVDTKNGEICVNTLKKDWNPD-LGIK 113 (189)
Q Consensus 42 ~~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HPnI~~~~G~iCl~~l~~~W~p~-~~i~ 113 (189)
++...++|. .+|.|.+|. +.|.+.+.||+.||.+..... --|-+|| .+|+|.|..| .+|.|. .++.
T Consensus 52 ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYL-h~W~~pssdLv 125 (365)
T KOG2391|consen 52 LLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYL-HNWDPPSSDLV 125 (365)
T ss_pred hhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhh-ccCCCccchHH
Confidence 445555554 578887775 566789999999999855322 1389999 9999999999 578865 6799
Q ss_pred HHHHHHHHhhcCCCC
Q psy15654 114 HILLTIKCLLIVPNP 128 (189)
Q Consensus 114 ~iL~~i~~ll~~p~~ 128 (189)
.++.-+.+.|.++.+
T Consensus 126 ~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPP 140 (365)
T ss_pred HHHHHHHHHhcCCCc
Confidence 999988888886543
No 30
>KOG3357|consensus
Probab=97.17 E-value=0.00042 Score=51.54 Aligned_cols=99 Identities=22% Similarity=0.397 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCE----------EEEEEecCCCCCCCCCeeE
Q psy15654 11 SPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGY----------FKVKLLLSKNFPSVPPKAF 80 (189)
Q Consensus 11 s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~----------f~~~i~fp~~YP~~pP~v~ 80 (189)
-...++||..||+.|-. +++-+.++-..|.-.-..+.||.|-|.+ |.+++.+|-.||..+|.+.
T Consensus 25 ~~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia 98 (167)
T KOG3357|consen 25 GDLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA 98 (167)
T ss_pred chHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence 34567899999999864 2333444445665555667788877754 5566667999999999986
Q ss_pred eeccc-ccccccCCCCeeeccC-CCCCC---CCcccHHHHH
Q psy15654 81 FLTKI-FHPNVDTKNGEICVNT-LKKDW---NPDLGIKHIL 116 (189)
Q Consensus 81 f~t~i-~HPnI~~~~G~iCl~~-l~~~W---~p~~~i~~iL 116 (189)
...-- -.--.+ ..|+|||.- .+.-| .|.++|...+
T Consensus 99 lpeldgktakmy-rggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 99 LPELDGKTAKMY-RGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred ccccCchhhhhh-cCceEeeccccchhhhhcCcchhHHHHH
Confidence 53210 001122 689999954 34445 4666666554
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.67 E-value=0.022 Score=42.26 Aligned_cols=90 Identities=17% Similarity=0.329 Sum_probs=62.4
Q ss_pred CCeEEEecCCCcceEEEEEeC--CCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccccccccCCCCee--eccC-----
Q psy15654 31 EGIHVCINEEDITDVQAIIDG--PAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEI--CVNT----- 101 (189)
Q Consensus 31 ~gi~~~~~~~d~~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~~G~i--Cl~~----- 101 (189)
.|+.++...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|-+.+..|-.... .+|.| |-+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~---~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA---DGGPIPNAAEVTQTFD 87 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc---CCCcCCchhcchhhcC
Confidence 47777766666667755 666 45567999999999999999999999887766533211 12223 3221
Q ss_pred ---------CCCCCCCcc-cHHHHHHHHHHhhc
Q psy15654 102 ---------LKKDWNPDL-GIKHILLTIKCLLI 124 (189)
Q Consensus 102 ---------l~~~W~p~~-~i~~iL~~i~~ll~ 124 (189)
-...|+|.. +|.+.|..|...|.
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 125799986 69999988887663
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.27 E-value=0.01 Score=42.21 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeC--CCCCCcCCCEEEEEEecCCCCCCCCCeeEeeccc
Q psy15654 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDG--PAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKI 85 (189)
Q Consensus 16 kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 85 (189)
.+...|+..|+.--+..+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.+.++.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888876544433 12233344556666632 2333445668999999999999999999877654
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.45 E-value=0.087 Score=37.09 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCCEEEEEEecCCCCCCCCCeeEeecc
Q psy15654 58 SNGYFKVKLLLSKNFPSVPPKAFFLTK 84 (189)
Q Consensus 58 egg~f~~~i~fp~~YP~~pP~v~f~t~ 84 (189)
..-.+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999987653
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.91 E-value=0.039 Score=43.00 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=48.4
Q ss_pred EEEEecCCCCCCCCCeeEeecccc---cccccCCC-----CeeeccCCC-CCCCCcccHHHHHHHHHHhhc
Q psy15654 63 KVKLLLSKNFPSVPPKAFFLTKIF---HPNVDTKN-----GEICVNTLK-KDWNPDLGIKHILLTIKCLLI 124 (189)
Q Consensus 63 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnI~~~~-----G~iCl~~l~-~~W~p~~~i~~iL~~i~~ll~ 124 (189)
.+.|.|+.+||..+|.|.++.+.| +||++ .. ..+|+.--. ..|.+..++..+|..|..-|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccC-CCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 356889999999999888877654 57777 54 679985543 689999999999998888775
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=86.08 E-value=1.1 Score=38.06 Aligned_cols=88 Identities=20% Similarity=0.351 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeeccccccccc
Q psy15654 12 PQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVD 91 (189)
Q Consensus 12 ~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 91 (189)
.....+|.+|+..+..+.. +.+. .++++...++.+.. ++-...++|.+|.+||.++|.+..--++ ..
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~-~~--- 164 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI-PF--- 164 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--H---
T ss_pred cHHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc-ch---
Confidence 5566788899998876533 3332 35678888888872 1255789999999999999975332222 11
Q ss_pred CCCCeeeccCCCCCCCC-cccHHHHHHHHHHhh
Q psy15654 92 TKNGEICVNTLKKDWNP-DLGIKHILLTIKCLL 123 (189)
Q Consensus 92 ~~~G~iCl~~l~~~W~p-~~~i~~iL~~i~~ll 123 (189)
...|.+ ..++.+|+...+..+
T Consensus 165 -----------~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 165 -----------SLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp -----------HHHHHCHT-SHHHHHHHHHHHH
T ss_pred -----------hhhhcccccCHHHHHHHHHHHH
Confidence 135888 567887777666655
No 36
>KOG0309|consensus
Probab=85.06 E-value=5.2 Score=38.38 Aligned_cols=73 Identities=8% Similarity=0.149 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEEecCCCcceEEEEEeCCCCCCcCCCEEEEEEecCCCCCC-CCCeeEeecc
Q psy15654 11 SPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS-VPPKAFFLTK 84 (189)
Q Consensus 11 s~~~~kRL~~E~~~l~~~~~~gi~~~~~~~d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~-~pP~v~f~t~ 84 (189)
..+..+-|.+|+.-|-.. -+.+.++-.+---..-.+.+.||-.-.-.--..++.|.||.+||. .+|.++|..+
T Consensus 418 n~~~pQnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 418 NETLPQNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred chhhhhhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 344566778888877543 334555533333345666777765543222345789999999999 5799999754
No 37
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=71.22 E-value=5.9 Score=31.01 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=28.5
Q ss_pred eccccc---ccccCCCCeeeccCCCCCCCCcccHHHHHHHHHHhhcCCCCCCc
Q psy15654 82 LTKIFH---PNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESA 131 (189)
Q Consensus 82 ~t~i~H---PnI~~~~G~iCl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p 131 (189)
.|++|| +||+ .+|+||+.... .|.......+..+...|.+....++
T Consensus 89 ~T~Ly~aPf~NV~-~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVY-SNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CCeeEeCCccccC-CCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 355676 5998 89999997642 4555444556666555554434443
No 38
>KOG4018|consensus
Probab=68.15 E-value=18 Score=29.45 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=18.5
Q ss_pred EEEEEEecCCCCCCCCCeeE
Q psy15654 61 YFKVKLLLSKNFPSVPPKAF 80 (189)
Q Consensus 61 ~f~~~i~fp~~YP~~pP~v~ 80 (189)
.|.+.+.++.+||..+|.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999993
No 39
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=65.68 E-value=10 Score=31.17 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=31.3
Q ss_pred ccccc---ccccCCCCeeeccCCCCCCCCcc-cHHHHHHHHHHhhcCCCCCCc
Q psy15654 83 TKIFH---PNVDTKNGEICVNTLKKDWNPDL-GIKHILLTIKCLLIVPNPESA 131 (189)
Q Consensus 83 t~i~H---PnI~~~~G~iCl~~l~~~W~p~~-~i~~iL~~i~~ll~~p~~~~p 131 (189)
|++|| +||+ .+|+||+.-.. .|.. ++.+ +......|.+..+.++
T Consensus 131 T~L~~aPffNV~-~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH~ 178 (228)
T TIGR03737 131 TKLYQAPLFNVW-SNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTHP 178 (228)
T ss_pred CeeccCCcCccC-CCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccCC
Confidence 45666 4998 89999997653 6764 5776 8888887776555444
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=60.57 E-value=23 Score=30.75 Aligned_cols=58 Identities=22% Similarity=0.645 Sum_probs=41.3
Q ss_pred CcCCCEEEEEEecCCCCCCCCCeeEee-cccccccccCCCCeeeccCCCCCCCCcc--cHHHHHHHHH
Q psy15654 56 PYSNGYFKVKLLLSKNFPSVPPKAFFL-TKIFHPNVDTKNGEICVNTLKKDWNPDL--GIKHILLTIK 120 (189)
Q Consensus 56 pyegg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnI~~~~G~iCl~~l~~~W~p~~--~i~~iL~~i~ 120 (189)
||-|-..+-+|.|...||..||-+.|- ..-|+|... . +..| .+|.+.- .+..++..+.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s----~--l~~L-~~Wd~~dp~~Ll~li~EL~ 121 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS----K--LPSL-VNWDPSDPNCLLNLISELR 121 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh----h--cchh-hcCCCCCchHHHHHHHHHH
Confidence 699999999999999999999999996 334888542 1 1222 5888774 3555554444
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=48.93 E-value=25 Score=26.55 Aligned_cols=26 Identities=19% Similarity=0.608 Sum_probs=22.8
Q ss_pred CCCEEEEEEecCCCCC-CCCCeeEeec
Q psy15654 58 SNGYFKVKLLLSKNFP-SVPPKAFFLT 83 (189)
Q Consensus 58 egg~f~~~i~fp~~YP-~~pP~v~f~t 83 (189)
+.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4589999999999999 9999998853
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=46.00 E-value=28 Score=27.63 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=22.9
Q ss_pred CCCEEEEEEecCCCCCCCCCeeEeec
Q psy15654 58 SNGYFKVKLLLSKNFPSVPPKAFFLT 83 (189)
Q Consensus 58 egg~f~~~i~fp~~YP~~pP~v~f~t 83 (189)
+.|.|.|+=.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 45889999999999999999998864
No 43
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=38.53 E-value=45 Score=25.71 Aligned_cols=26 Identities=12% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCCEEEEEEecCCCCC-----CCCCeeEeec
Q psy15654 58 SNGYFKVKLLLSKNFP-----SVPPKAFFLT 83 (189)
Q Consensus 58 egg~f~~~i~fp~~YP-----~~pP~v~f~t 83 (189)
+.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 3488999999999999 8999998854
No 44
>KOG4445|consensus
Probab=37.09 E-value=40 Score=29.02 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=22.2
Q ss_pred CEEEEEEecCCCCCCCCCeeEeecc
Q psy15654 60 GYFKVKLLLSKNFPSVPPKAFFLTK 84 (189)
Q Consensus 60 g~f~~~i~fp~~YP~~pP~v~f~t~ 84 (189)
-.+.+.+..++.||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677889999999999999999876
No 45
>KOG1047|consensus
Probab=35.96 E-value=34 Score=31.91 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=24.3
Q ss_pred CCcCCCEEEEEEecCCCCCC---CCCeeEeecc
Q psy15654 55 TPYSNGYFKVKLLLSKNFPS---VPPKAFFLTK 84 (189)
Q Consensus 55 tpyegg~f~~~i~fp~~YP~---~pP~v~f~t~ 84 (189)
+||.=|.|.+ +.+|++||+ +-|-++|+||
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4787888887 557999999 6799999998
No 46
>KOG0177|consensus
Probab=33.66 E-value=17 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=23.8
Q ss_pred CCCeeeccCCCCCCCCcccHHHHHHHHHHh
Q psy15654 93 KNGEICVNTLKKDWNPDLGIKHILLTIKCL 122 (189)
Q Consensus 93 ~~G~iCl~~l~~~W~p~~~i~~iL~~i~~l 122 (189)
..+..|+++|...|+|.+|+...+.-++..
T Consensus 134 y~~~f~~sIlDr~Y~pdmt~eea~~lmkKC 163 (200)
T KOG0177|consen 134 YGSYFCLSILDRYYKPDMTIEEALDLMKKC 163 (200)
T ss_pred chhhhhHHHHHhhhCCCCCHHHHHHHHHHH
Confidence 456799999999999999988776655443
No 47
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=33.42 E-value=1.4e+02 Score=20.34 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=26.9
Q ss_pred ceEEEEEeCCCCCCcCCCEEEEEEecCCCCCCCCCeeEeecccc
Q psy15654 43 TDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIF 86 (189)
Q Consensus 43 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 86 (189)
..|.+.|.|+.+..-..-+=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 47999999988764444555677778888776 6666665544
No 48
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=31.55 E-value=96 Score=25.93 Aligned_cols=47 Identities=26% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCcceEEEEEeCCCCCCcCC---CEEEEEEecC-----CCCCCCCCeeEeecccc
Q psy15654 40 EDITDVQAIIDGPAGTPYSN---GYFKVKLLLS-----KNFPSVPPKAFFLTKIF 86 (189)
Q Consensus 40 ~d~~~w~~~i~Gp~~tpyeg---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 86 (189)
.|..-|++.....+...-.| ..|+.++.+. .+-||+||+|..+++-|
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 35566887777444333333 3356666654 78999999999999855
No 49
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=31.21 E-value=60 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.0
Q ss_pred CCEEEEEEecCCCCCCCCCeeEeec
Q psy15654 59 NGYFKVKLLLSKNFPSVPPKAFFLT 83 (189)
Q Consensus 59 gg~f~~~i~fp~~YP~~pP~v~f~t 83 (189)
+=.|-+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3347788889999999999999876
No 50
>smart00340 HALZ homeobox associated leucin zipper.
Probab=30.73 E-value=49 Score=19.88 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhcC
Q psy15654 15 IRRVSKELQDLTKT 28 (189)
Q Consensus 15 ~kRL~~E~~~l~~~ 28 (189)
-+||++|+.+|+..
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 37999999998764
No 51
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=28.78 E-value=1e+02 Score=21.57 Aligned_cols=38 Identities=5% Similarity=0.136 Sum_probs=25.9
Q ss_pred cCCCEEEEEEecCCCCCCCCCeeEeecccccccccCCCCeee
Q psy15654 57 YSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEIC 98 (189)
Q Consensus 57 yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~~G~iC 98 (189)
-+|..+.|...-|..|| .|.|.+.+.-. ..|. .++++-
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~~~-~~i~-~~~Ri~ 53 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNSDL-LHIT-QDERVS 53 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECCCC-cccc-ccccEE
Confidence 56888888888899999 58998886522 2333 345543
No 52
>KOG2851|consensus
Probab=27.31 E-value=1.2e+02 Score=26.83 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=27.4
Q ss_pred cccCCCCeeeccCC---CCCCCCcc--cHHHHHHHHHHh
Q psy15654 89 NVDTKNGEICVNTL---KKDWNPDL--GIKHILLTIKCL 122 (189)
Q Consensus 89 nI~~~~G~iCl~~l---~~~W~p~~--~i~~iL~~i~~l 122 (189)
.|.+.||+||..+= -+...|.. +|.++|..|.++
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 46678999998763 16788874 799999999888
No 53
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=26.02 E-value=70 Score=24.00 Aligned_cols=21 Identities=19% Similarity=0.261 Sum_probs=17.1
Q ss_pred cCCCcceEEEEEeCCCCCCcC
Q psy15654 38 NEEDITDVQAIIDGPAGTPYS 58 (189)
Q Consensus 38 ~~~d~~~w~~~i~Gp~~tpye 58 (189)
.++|...|.|++.|++||+..
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred cCCCCcceEEEEECCCCccee
Confidence 356788899999999988764
No 54
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=25.28 E-value=94 Score=24.81 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.0
Q ss_pred CCCEEEEEEecCCCCCC-----CCCeeEee
Q psy15654 58 SNGYFKVKLLLSKNFPS-----VPPKAFFL 82 (189)
Q Consensus 58 egg~f~~~i~fp~~YP~-----~pP~v~f~ 82 (189)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34889999999999998 88887764
No 55
>PF07809 RTP801_C: RTP801 C-terminal region; InterPro: IPR012918 The members of this family are sequences similar to the C-terminal region of RTP801, the protein product of a hypoxia-inducible factor 1 (HIF-1)- responsive gene []. Two members of this family expressed by Drosophila melanogaster, Scylla (Q9NHN4 from SWISSPROT) and Charybde (Q9NHN5 from SWISSPROT), are designated as Hox targets []. RTP801 is thought to be involved in various cellular processes []. Over expression of the gene caused the apoptosis-resistant phenotype in cycling cells, and apoptosis sensitivity in growth arrested cells []. Moreover, the protein product of the mouse homologue of RTP801 (dig2 (Q9D3F7 from SWISSPROT)) is thought to be induced by diverse apoptotic signals, and also by dexamethasone treatment []. ; GO: 0009968 negative regulation of signal transduction, 0005737 cytoplasm; PDB: 3LQ9_A.
Probab=24.91 E-value=2.8e+02 Score=20.34 Aligned_cols=61 Identities=25% Similarity=0.499 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeE-----EEecCC-CcceEEEEEeCCCCCCcCCCEEEEEEecCCCCC
Q psy15654 10 LSPQIIRRVSKELQDLTKTPPEGIH-----VCINEE-DITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73 (189)
Q Consensus 10 ~s~~~~kRL~~E~~~l~~~~~~gi~-----~~~~~~-d~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 73 (189)
++.....||.+|+..+..+.|-|+. +....+ +...=...|.- .|.---+|.+.+.|-.+-.
T Consensus 16 lP~~L~~~Ia~dvL~ls~~EPCGlRGc~i~v~~E~~~~~~~~l~~i~~---Dp~~vpTFEL~Lvlr~d~~ 82 (116)
T PF07809_consen 16 LPEDLTRRIARDVLRLSESEPCGLRGCLIDVCFEDEPDNCRRLGQIKV---DPSTVPTFELTLVLRQDSS 82 (116)
T ss_dssp --HHHHHHHHHHHHHHHTTSTTGGGGEEEEEEEEET-TEEEEEEEEES----TTS---EEEEEEEE--TT
T ss_pred chHHHHHHHHHHHHHhhcCCCCcceeeEEEEEEccccchheeeccEec---CCCCCCcEEEEEEEeeCCC
Confidence 5678899999999999999987642 333322 32222344542 2566788999999977655
No 56
>PRK05414 urocanate hydratase; Provisional
Probab=24.90 E-value=2e+02 Score=26.70 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.2
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHccc
Q psy15654 134 EEAGKLLLEHYDDYSRRATMMTEIHAQA 161 (189)
Q Consensus 134 ~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 161 (189)
.|+..+..+|++.|.+.|++...+|..+
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv~A 309 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHVEA 309 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999999998888755
No 57
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=23.72 E-value=1.5e+02 Score=27.54 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=24.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHccc
Q psy15654 134 EEAGKLLLEHYDDYSRRATMMTEIHAQA 161 (189)
Q Consensus 134 ~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 161 (189)
.++.++..+|++.|.+.|++...+|..+
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv~A 299 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHVEA 299 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 3777888899999999999998888755
No 58
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=23.16 E-value=2.3e+02 Score=26.21 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=23.9
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHccc
Q psy15654 134 EEAGKLLLEHYDDYSRRATMMTEIHAQA 161 (189)
Q Consensus 134 ~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 161 (189)
.++..+..+|++.|.+.|++...+|..+
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv~A 300 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHVRA 300 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 4778888999999999999988888655
No 59
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=23.09 E-value=1.1e+02 Score=24.21 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=19.9
Q ss_pred CCEEEEEEecCCCCCC-----CCCeeEee
Q psy15654 59 NGYFKVKLLLSKNFPS-----VPPKAFFL 82 (189)
Q Consensus 59 gg~f~~~i~fp~~YP~-----~pP~v~f~ 82 (189)
.|.|.|+-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999995 78877664
No 60
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=21.05 E-value=1.5e+02 Score=25.68 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.0
Q ss_pred eEEEEEeCCCCC-CcCCCEEEEEEe---cCCCCCCCCCeeEee
Q psy15654 44 DVQAIIDGPAGT-PYSNGYFKVKLL---LSKNFPSVPPKAFFL 82 (189)
Q Consensus 44 ~w~~~i~Gp~~t-pyegg~f~~~i~---fp~~YP~~pP~v~f~ 82 (189)
+|+..|.|..++ -|++|.+++++. |..- =.+.|+|||-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG 239 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFG 239 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEee
Confidence 689999996666 788999988876 3332 3356799984
Done!