RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15654
(189 letters)
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 213 bits (544), Expect = 1e-71
Identities = 104/155 (67%), Positives = 126/155 (81%), Gaps = 1/155 (0%)
Query: 5 SNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKV 64
SNVENL P IIR V KE+ LT PP+GI V NEED+TD+Q I+GP GTPY+ G F++
Sbjct: 5 SNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRM 64
Query: 65 KLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLI 124
KLLL K+FP+ PPK +FLTKIFHPNV NGEICVN LK+DW +LGI+H+LLTIKCLLI
Sbjct: 65 KLLLGKDFPASPPKGYFLTKIFHPNVG-ANGEICVNVLKRDWTAELGIRHVLLTIKCLLI 123
Query: 125 VPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
PNPESALNEEAG+LLLE+Y++Y+ RA ++TEIH
Sbjct: 124 HPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 201 bits (512), Expect = 3e-66
Identities = 51/182 (28%), Positives = 92/182 (50%)
Query: 3 SMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYF 62
N+ + + R+ KEL+D+ + I I + + + I GP GTPY G+F
Sbjct: 13 GRENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHF 72
Query: 63 KVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCL 122
+ + + ++P PPK F+TKI+HPN+ ++ G IC++ LK +W+P L I+ LL+I+ L
Sbjct: 73 TLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQAL 132
Query: 123 LIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCSKLGYKSSESRQSNIENQ 182
L P P+ + E K+ E++ + + A++ T+ A K + +
Sbjct: 133 LSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMGFSED 192
Query: 183 HS 184
+
Sbjct: 193 QA 194
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 190 bits (484), Expect = 1e-62
Identities = 44/159 (27%), Positives = 88/159 (55%), Gaps = 3/159 (1%)
Query: 3 SMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYF 62
+M+N ++ Q I+R KE+ +T I V + +E+ T+++ I GP TPY G +
Sbjct: 4 AMAN---IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRY 60
Query: 63 KVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCL 122
++++ + + +P PPK F+TKI+HPN+ + G IC++ LK W + ++ +LL+++ L
Sbjct: 61 QLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL 120
Query: 123 LIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161
L P+ + ++ + + + A + ++A A
Sbjct: 121 LAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 191 bits (486), Expect = 2e-62
Identities = 45/163 (27%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 4 MSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK 63
M+N ++ Q I+R KE+ +T I V + +E+ T+++ I GP TPY G ++
Sbjct: 2 MAN---IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 58
Query: 64 VKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
+++ + + +P PPK F+TKI+HPN+ + G IC++ LK W + ++ +LL+++ LL
Sbjct: 59 LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL 118
Query: 124 IVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCSK 166
P+ + ++ + + + A + ++A A S
Sbjct: 119 AAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSP 161
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 189 bits (482), Expect = 2e-62
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 14 IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
I RR++KE Q+L PP GI E+ +I+GP GTPY G +K++L L + +P
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALN 133
PPK FLTKI+HPN+D K G IC++ LK W+P L I+ +LL+I+ LL P P+ L+
Sbjct: 62 MEPPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 134 EEAGKLLLEHYDDYSRRATMMTEIHAQAS 162
+ + + +D A +I+A +
Sbjct: 121 SKVAEHFKQDKNDAEHVARQWNKIYANNN 149
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 189 bits (482), Expect = 2e-62
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 1/145 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
++++ D TK G + +N D + GP GT Y G +KV + L ++P
Sbjct: 2 TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFA 61
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHIL-LTIKCLLIVPNPESALNE 134
P F+ K+ HPNVD +G +C++ + + W P + ++ + + LL PNP LN
Sbjct: 62 SPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNS 121
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
+A LL++ + Y + +++A
Sbjct: 122 DAASLLMKDKNIYEEKVKEYVKLYA 146
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 190 bits (485), Expect = 2e-62
Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 13/169 (7%)
Query: 5 SNVENLSPQIIRRVSKELQDLTKT-------------PPEGIHVCINEEDITDVQAIIDG 51
+ +P+ R+ KEL D+ + G+ I DI + I G
Sbjct: 24 TAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAG 83
Query: 52 PAGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLG 111
P GTPY G+F + +++ ++P PPK F+TKI+HPN+ ++ G IC++ LK +W+P L
Sbjct: 84 PLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALT 143
Query: 112 IKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
I+ LL+I+ +L P P + E K+++E++ + + A + TE A+
Sbjct: 144 IRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK 192
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 191 bits (487), Expect = 7e-62
Identities = 45/166 (27%), Positives = 90/166 (54%)
Query: 1 MNSMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNG 60
+ S ++ N++ Q I+R KE+ +T I V + +E+ T+++ I GP TPY G
Sbjct: 48 IGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGG 107
Query: 61 YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIK 120
+++++ + + +P PPK F+TKI+HPN+ + G IC++ LK W + ++ +LL+++
Sbjct: 108 RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 167
Query: 121 CLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCSK 166
LL P+ + ++ + + + A + ++A A S
Sbjct: 168 ALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSP 213
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 187 bits (477), Expect = 9e-62
Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
+R+ KE+Q + P I + ++E DI ++ GP GTPY G F V + + +P
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALN 133
PPK F TK++HPN+ + G IC++ LK W+P + +K L++++ LL P P +
Sbjct: 63 FKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQD 122
Query: 134 EEAGKLLLEHYDDYSRRATMMTEIHA 159
E + L + +++ A + T ++A
Sbjct: 123 AEVAQHYLRDRESFNKTAALWTRLYA 148
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 186 bits (475), Expect = 2e-61
Identities = 50/153 (32%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSK 70
+ + +R+ KE + L P GI +++++ Q I+GP +PY +G F+++L L
Sbjct: 3 AASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 62
Query: 71 NFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPES 130
++P PK FLTKI+HPN+D + G IC++ LK +W+P L I+ +LL+I+ LL PNP
Sbjct: 63 DYPMEAPKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 121
Query: 131 ALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
L + + +++ +A T+++A+
Sbjct: 122 PLANDVAEDWIKNEQGAKAKAREWTKLYAKKKP 154
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 188 bits (478), Expect = 4e-61
Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 1/169 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
+R+ KE+Q + P I + ++E DI ++ GP GTPY G F V + + +P
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALN 133
PPK F TK++HPN+ + G IC++ L+ W+P + +K L++++ LL P P +
Sbjct: 64 FKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQD 123
Query: 134 EEAGKLLLEHYDDYSRRATMMTEIHAQASKCSKLGYKSSESRQSNIENQ 182
E + L + +++ A + T ++A + + G +
Sbjct: 124 AEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVEESDLYGIDHDL 172
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 181 bits (461), Expect = 3e-59
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSK 70
S + RR+ KE Q L P GI +E + +I GP +P+ G FK++L L +
Sbjct: 3 SAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 62
Query: 71 NFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPES 130
+P PK F+TKI+HPNVD K G IC++ LK W+P L I+ +LL+I+ LL PNP+
Sbjct: 63 EYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121
Query: 131 ALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
L + + + A T ++A
Sbjct: 122 PLANDVAEQWKTNEAQAIETARAWTRLYA 150
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 179 bits (457), Expect = 2e-58
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSK 70
S Q R+ +EL L PP GI +++ + D++A I G A TPY G FK+++++ +
Sbjct: 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61
Query: 71 NFPSVPPKAFFLTKIFHPNVDTKNGEICVNTL----KKDWNPDLGIKHILLTIKCLLIVP 126
+P PP+ FLT I+HPN+D G IC++ L K W P L I +L +I+ L+ P
Sbjct: 62 RYPFEPPQIRFLTPIYHPNID-SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120
Query: 127 NPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
NP+ L + + + + A TE HA+ +
Sbjct: 121 NPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQ 157
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 170 bits (432), Expect = 2e-54
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 2 NSMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQA----IIDGPAGTPY 57
NS S NLS R+ ++L L P ++V + + Q+ +I P Y
Sbjct: 19 NSSSIQPNLSAAR-IRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYY 77
Query: 58 SNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILL 117
+ G L ++ +P PPK L KIFHPN+D G +C+N L++DW+P L ++ I+
Sbjct: 78 NYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID-LKGNVCLNILREDWSPALDLQSIIT 136
Query: 118 TIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
+ L + PNP LN++A KLL E +++ + +
Sbjct: 137 GLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGS 178
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 163 bits (416), Expect = 2e-52
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KELQDL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 66 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 124
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y++ A T+ +A
Sbjct: 125 EIARIYKTDRERYNQLAREWTQKYA 149
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 163 bits (415), Expect = 4e-52
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Query: 2 NSMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGY 61
+ MS + ++R+ KEL DL + PP +D+ QA I GP +PY G
Sbjct: 8 HPMSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGV 67
Query: 62 FKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKC 121
F + + ++P PPK F T+I+HPN++ NG IC++ L+ W+P L I +LL+I
Sbjct: 68 FFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICS 126
Query: 122 LLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
LL PNP+ L E ++ + Y+R A T+ +A
Sbjct: 127 LLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 161 bits (409), Expect = 3e-51
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 1/144 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R++KEL DL+K PP +D+ QA I GP +PYS G F + + ++P
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PPK F TKI+HPN++ G IC++ LK W+P L I +LL+I LL PNP+ L E
Sbjct: 84 PPKVNFTTKIYHPNIN-SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 142
Query: 136 AGKLLLEHYDDYSRRATMMTEIHA 159
L Y + A ++ +A
Sbjct: 143 IAHLYKSDRMRYDQTAREWSQKYA 166
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 160 bits (407), Expect = 1e-50
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 1/157 (0%)
Query: 3 SMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYF 62
SMS L +R+ KEL D+T PP ++I + ++ I GP G+ Y G F
Sbjct: 38 SMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVF 97
Query: 63 KVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCL 122
+ + + +P PPK F T+I+H N++ G IC++ LK +W+P L I +LL+I L
Sbjct: 98 FLDITFTPEYPFKPPKVTFRTRIYHCNIN-SQGVICLDILKDNWSPALTISKVLLSICSL 156
Query: 123 LIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
L NP L + + ++ R A T+ +A
Sbjct: 157 LTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 159 bits (405), Expect = 2e-50
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 1 MNSMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNG 60
SMS+ RR+ ++ L ++ E + + + GP GTPY G
Sbjct: 17 RGSMSS----PSPGKRRMDTDVIKLIESKHEVTIL----GGLNEFVVKFYGPQGTPYEGG 68
Query: 61 YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLT-I 119
+KV++ L +P P F+ KIFHPN+D +G +C++ + + W + +I + +
Sbjct: 69 VWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFL 128
Query: 120 KCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASK 163
LL PNP LN +A + L ++Y ++ + +A
Sbjct: 129 PQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEA 172
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 157 bits (399), Expect = 1e-49
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSK 70
+R + D + V ++ + + GP GTPY +G + + + L
Sbjct: 7 GAGNLRSNRRREMDYMRLCNSTRKVYPSD-TVAEFWVEFKGPEGTPYEDGTWMLHVQLPS 65
Query: 71 NFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHIL-LTIKCLLIVPNPE 129
++P P F +I HPNVD ++G +C++ + + W P +++I + + LL PNP
Sbjct: 66 DYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS 125
Query: 130 SALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCSKLGYKSSE 173
LN +A LL + HA K + ++
Sbjct: 126 DPLNVQAAHLLHADRVGFDALLREHVSTHATPQKALESIPEAYR 169
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 155 bits (395), Expect = 3e-49
Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ ++ + L + PP GI + +I A+I GP TP+ G FK+ L S+++P+
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP F++++FHPN+ +G IC++ L+ W+P + IL +I+ LL PNP S N E
Sbjct: 67 PPTVRFVSRMFHPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSE 125
Query: 136 AGKLLLEHYDDYSRRA 151
A ++ E +Y+RR
Sbjct: 126 AARMYSESKREYNRRV 141
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 154 bits (390), Expect = 3e-48
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ ++ + + + P G+ +++ A+I GPA TPY +G F++ L + +P+
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP FL+++FHPNV NGEIC++ L+ W P + IL +I+ L PNP S N E
Sbjct: 67 PPHVKFLSEMFHPNVY-ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVE 125
Query: 136 AGKLLLEHYDDYSRRATMMTEIHAQ 160
A L +H Y +R E +
Sbjct: 126 AATLFKDHKSQYVKRVKETVEKSWE 150
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 153 bits (388), Expect = 4e-48
Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 4 MSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK 63
M+ + + +R+ +EL+ L + GI + +++ A +DGP T Y + +K
Sbjct: 1 MTTSKERHS-VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYK 59
Query: 64 VKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
+ L ++P PP F T +HPNVD ++G IC++ LK++W ++ ILL+++ LL
Sbjct: 60 LTLEFPSDYPYKPPVVKFTTPCWHPNVD-QSGNICLDILKENWTASYDVRTILLSLQSLL 118
Query: 124 IVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
PN S LN +A + + +Y + +
Sbjct: 119 GEPNNASPLNAQAAD-MWSNQTEYKKVLHEKYKTAQ 153
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 153 bits (388), Expect = 5e-48
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 3 SMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYF 62
+ ++ + + ++ DL + +GI ED+ + + I+G + + F
Sbjct: 13 GLVPRGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVF 72
Query: 63 KVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIK 120
++ + + + PP F+T FHPNVD G+ C++ L + WN + + ILL ++
Sbjct: 73 QLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQ 132
Query: 121 CLLIVPNPESALNEEAGKLLLEHYDDYSRRA 151
+L P E+ +N EA ++L++ Y
Sbjct: 133 VMLSNPVLENPVNLEAARILVKDESLYRTIL 163
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 151 bits (383), Expect = 2e-47
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Query: 16 RRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
RV KEL+DL K PP + ++ ++ A++ P PY F +++ +P
Sbjct: 7 MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPF 65
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKD-WNPDLGIKHILLTIKCLLIVPNPESALN 133
PP F TKI+HPNVD +NG+IC+ + + W P +L + L+ PN L
Sbjct: 66 KPPMIKFTTKIYHPNVD-ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLR 124
Query: 134 EEAGKLLLEHYDDYSRRATMMTEIHA 159
+ LL ++ + + + A T
Sbjct: 125 MDLADLLTQNPELFRKNAEEFTLRFG 150
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 150 bits (382), Expect = 3e-47
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 16 RRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
RR+ KEL+++ K + ++E ++ Q +I P PY G F++++ +P
Sbjct: 5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 63
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKD-WNPDLGIKHILLTIKCLLIVPNPESALN 133
PPK F TKI+HPN+D + G++C+ + + W P ++ ++ L+ P PE L
Sbjct: 64 KPPKITFKTKIYHPNID-EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLR 122
Query: 134 EEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+ + + + + A T+ + +
Sbjct: 123 ADLAEEYSKDRKKFCKNAEEFTKKYGE 149
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 149 bits (378), Expect = 2e-46
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ +EL L + +GI +++ I G AGT Y + +K+ L +P
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
P FLT +HPNVD G I ++ LK+ W+ ++ ILL+I+ LL PN +S LN
Sbjct: 93 APTVKFLTPCYHPNVD-TQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 151
Query: 136 AGKLLLEHYDDYSRRATMMTEIHAQASK 163
A + L ++ + + + +
Sbjct: 152 AAE-LWKNPTAFKKYLQETYSKQVTSQE 178
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 149 bits (377), Expect = 3e-46
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+ + KE+ +L P V + + + P Y G F+ + + + V
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKK------DWNPDLGIKHILLTIKCLLI-VPNP 128
PPK LTKI+HPN+ + GEIC++ L++ W P +K ++ + L + N
Sbjct: 77 PPKVKCLTKIWHPNIT-ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNF 135
Query: 129 ESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+ LN EA + L +D+ + + +A+
Sbjct: 136 DDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 148 bits (376), Expect = 3e-46
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGIHV-----CINEEDITDVQAIIDGPAGTPYSNGYFKVK 65
S ++R+ +E + K P G + D+ +A I G GT ++ G + +
Sbjct: 2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPIT 61
Query: 66 LLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLL 123
+ +PS PPK F +HPNV +G IC++ L +DW P + +K I+L ++ LL
Sbjct: 62 VEYPNEYPSKPPKVKFPAGFYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120
Query: 124 IVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
PNP S E A + + +Y ++ + + +++
Sbjct: 121 DSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 147 bits (374), Expect = 5e-46
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 9 NLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDV-----QAIIDGPAGTPYSNGYFK 63
++S + R+++E + K P G + + + I G GTP+ G FK
Sbjct: 3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 62
Query: 64 VKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKC 121
+++L ++PS PPK F +FHPNV +G +C++ L+ KDW P + IK ILL I+
Sbjct: 63 LRMLFKDDYPSSPPKCKFEPPLFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQE 121
Query: 122 LLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161
LL PN +S EA + ++ +Y +R + A +
Sbjct: 122 LLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 154 bits (391), Expect = 6e-46
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KEL DL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN++ NG I ++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 65 KPPKVAFTTRIYHPNIN-SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHAQASKCSKLGYKSSESRQSNIENQHSDCSKS 189
E ++ + Y+R A T+ +A + + R +
Sbjct: 124 EIARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIMAQQDRIQQEIAVQNPLVSE 178
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 145 bits (367), Expect = 1e-44
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
R+ K++ +L I + +D+ + + +I P Y +G F + + +P
Sbjct: 29 LRIQKDINELNLPKTCDISFS-DPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHD 86
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PPK T ++HPN+D G + +N L++DW P L I I+ ++ L + PNPE LN+E
Sbjct: 87 PPKVKCETMVYHPNID-LEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKE 145
Query: 136 AGKLLLEHYDDYSRRATMMTEIHA 159
A ++L + + +
Sbjct: 146 AAEVLQNNRRLFEQNVQRSMRGGY 169
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 144 bits (366), Expect = 1e-44
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 15 IRRVSKELQDLTKT---------PPEGIHVC---INEEDITDVQAIIDGPAGTPYSNGYF 62
+ R+ KE + + KT P GI I+E D++ +AII GP+ TPY N F
Sbjct: 8 MSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQF 67
Query: 63 KVKLLLSKNFPSVPPK-AFFLTKIFHPNVDTKNGEICVNTLKKD-WNPDLGIKHILLTIK 120
++ + + ++P PPK +F I H NV + GEIC+N LK + W P + H + +
Sbjct: 68 RILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVW 127
Query: 121 CLLIVPNPESALNEEAGKLLLEH-YDDYSRRATMMTEIHA 159
LL P +S L+ + G ++ Y
Sbjct: 128 RLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERE 167
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 144 bits (365), Expect = 1e-44
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Query: 4 MSNVENLSPQIIRRVSKELQDLTKTPPEGIHV-----CINEEDITDVQAIIDGPAGTPYS 58
M + + S R+ +E + + P G + D+ + + I G T +
Sbjct: 1 MHHHHHHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWE 60
Query: 59 NGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHIL 116
G +K+ + + +P+ PPK F +FHPNV +G +C++ L + W P + IK IL
Sbjct: 61 GGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVY-PSGTVCLSILNEEEGWKPAITIKQIL 119
Query: 117 LTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
L I+ LL PN S EA + + +Y +R +A
Sbjct: 120 LGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 143 bits (364), Expect = 2e-44
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
R+ K++ +L I + +D+ + + +I P Y +G F + + +P
Sbjct: 9 LRIQKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHD 66
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PPK T ++HPN+D G +C+N L++DW P L I I+ ++ L + PNPE LN+E
Sbjct: 67 PPKVKCETMVYHPNID-LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKE 125
Query: 136 AGKLLLEHYDDYSRRATMMTEIHA 159
A ++L + + +
Sbjct: 126 AAEVLQNNRRLFEQNVQRSMRGGY 149
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 143 bits (363), Expect = 3e-44
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)
Query: 16 RRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+R+ E + LT PPEGI +NEE+ + +A+I GP T + G F L ++P
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKD-------------WNPDLGIKHILLTIKC 121
PPK F ++FHPN+ +G +C++ L W+P ++ ILL++
Sbjct: 66 SPPKMRFTCEMFHPNIY-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 124
Query: 122 LLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTE 156
+L PN ES N +A K+ + + + + A + +
Sbjct: 125 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 159
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 140 bits (355), Expect = 5e-43
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 16 RRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+R+ KELQ L K P GI +E +I +I GP TPY++G F KL K++P
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKD-------------WNPDLGIKHILLTIKC 121
PPK F I HPN+ NGE+C++ L W+P ++ ILL++
Sbjct: 67 SPPKLTFTPSILHPNIY-PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMS 125
Query: 122 LLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTE 156
+L PN ES N +A L ++ ++ R+ +
Sbjct: 126 MLSEPNIESGANIDACILWRDNRPEFERQVKLSIL 160
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 139 bits (353), Expect = 1e-42
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLS 69
SP + + EL+ L + P EG V ++E D+ + + I GP T Y GYFK +L
Sbjct: 5 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFP 64
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKD-------------WNPDLGIKHIL 116
++P PP FLTK++HPN+ + G++C++ L WNP ++ IL
Sbjct: 65 IDYPYSPPAFRFLTKMWHPNIY-ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 123
Query: 117 LTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCSK 166
L++ LL PN S N +A + + + + T+I + +K
Sbjct: 124 LSVISLLNEPNTFSPANVDASVMYRKWKESK-GKDREYTDIIRKQVLGTK 172
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 138 bits (349), Expect = 4e-42
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 9 NLSPQIIRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLL 67
L P+ + ++L +L K P EG I++ D+ + +I GP T Y G FK L
Sbjct: 13 GLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT 72
Query: 68 LSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKD-------------WNPDLGIKH 114
K++P PPK F+T+I+HPNVD KNG++C++ L + W P ++
Sbjct: 73 FPKDYPLRPPKMKFITEIWHPNVD-KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVET 131
Query: 115 ILLTIKCLLIVPNPESALNEEAGKLLLEHYD-DYSRRA 151
I++++ +L PN +S N +A K E + ++ R+
Sbjct: 132 IMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 169
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 135 bits (341), Expect = 2e-41
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
R+ KEL + PP + ++ +I G T Y+N +K+K++ ++P
Sbjct: 9 YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLK 68
Query: 76 PPKAFFLTK-IFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPES 130
PP +FL K H +V NG+IC++ L D+NP L I ++L+I +L +
Sbjct: 69 PPIVYFLQKPPKHTHVY-SNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 134 bits (339), Expect = 5e-41
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
R+ KEL + K PP + ++ +I G T Y+N +K+K++ N+P
Sbjct: 23 YRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLK 82
Query: 76 PPKAFFLTK-IFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPE 129
PP +FL K H +V NG+IC++ L D+NP L I ++L+I +L +
Sbjct: 83 PPIVYFLQKPPKHTHVY-SNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKEK 136
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 133 bits (337), Expect = 1e-40
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 15 IRRVSKELQDLTK-TPPEGIHVCINEEDITDV---QAIIDGPAGTPYSNGYFKVKLLLSK 70
R+ +EL+ K PE + + D + I GP + + N + + +
Sbjct: 8 NFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGP 67
Query: 71 NFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK-KDWNPDLGIKHILLTIKCLLIVPNPE 129
N+P PPK F++KI P V+ GE+ + +DW ++ +LL ++ + P +
Sbjct: 68 NYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANK 127
Query: 130 SALNEEAGKL 139
+ G+
Sbjct: 128 KLRQPKEGET 137
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 134 bits (338), Expect = 2e-40
Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 3 SMSNVENLSPQIIRRVSKELQDLTK------------TPPEGIHVCINEEDITDVQAIID 50
SM N+ N +R+ K+L+ L + +P ++ + I + +
Sbjct: 4 SMKNISN------KRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVK 57
Query: 51 GPAGTPYS--NGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNP 108
PA + Y +++ +L S ++P PP F+T ++ P V G IC + W P
Sbjct: 58 APADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTP 116
Query: 109 DLGIKHILLTIKCLLIV---PNPESALNEEAGKLLLEHYDDYSRRA 151
D ++ + + + +N EA L + D++ R
Sbjct: 117 DQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARV 162
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 134 bits (339), Expect = 2e-40
Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 3/182 (1%)
Query: 3 SMSNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYF 62
S ++ + +R+ ++ + K P I +I + ++ GP TPY GY+
Sbjct: 4 SSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYY 63
Query: 63 KVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCL 122
KL+ + FP PP + +T +T+ + WNP + IL +
Sbjct: 64 HGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSF 123
Query: 123 LIVPNPES---ALNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCSKLGYKSSESRQSNI 179
++ P ++ + L ++ + + E+ + + K K+ + S
Sbjct: 124 MVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRP 183
Query: 180 EN 181
+
Sbjct: 184 QT 185
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 126 bits (319), Expect = 1e-37
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDV-----QAIIDGPAGTPYSNGYFKVKLLLSK 70
R+ +EL++ K +G V ED D+ +I GP T Y N + +K+
Sbjct: 28 FRLLEELEEGQKGVGDGT-VSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGP 86
Query: 71 NFPSVPPKAFFLTKIFHPNVDTKNGEI---CVNTLKKDWNPDLGIKHILLTIKCLLIVPN 127
+P PP F+TKI V++ NG + ++ L K W IK +L ++ L++
Sbjct: 87 KYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-WQNSYSIKVVLQELRRLMMSKE 145
Query: 128 PESALNEEAGKL 139
G+
Sbjct: 146 NMKLPQPPEGQC 157
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 126 bits (318), Expect = 1e-37
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 15 IRRVSKELQDLTKT-PPEGIH---VCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSK 70
R+ EL+ K EG+ ++ +++ I G GT + N + + +
Sbjct: 23 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDD 82
Query: 71 NFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKC-LLIVPN 127
N+P PP F TKI VD G + N L K+WN + I+ IL++++ +L N
Sbjct: 83 NYPDSPPTVKFDTKIEMSCVD-NCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSAN 141
Query: 128 PESALNEEA 136
E
Sbjct: 142 KRLPQPNEG 150
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 125 bits (315), Expect = 5e-37
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDV-----QAIIDGPAGTPYSNGYFKVKLLLSK 70
R+ +EL++ K +G V ED D+ +I GP T Y N + +K+
Sbjct: 38 FRLLEELEEGQKGVGDGT-VSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGP 96
Query: 71 NFPSVPPKAFFLTKIFHPNVDTKNGEI---CVNTLKKDWNPDLGIKHILLTIKCLLIVPN 127
+P PP F+TKI V++ NG + ++ L K W IK +L ++ L++
Sbjct: 97 KYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-WQNSYSIKVVLQELRRLMMSKE 155
Query: 128 PESALNEEAGKL 139
G+
Sbjct: 156 NMKLPQPPEGQC 167
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 118 bits (297), Expect = 1e-34
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 2 NSMSNVENLSPQIIRRVSKELQDLTKTPPEGIHV--CINEEDITDVQAIIDGPAGTPYSN 59
SM+++ +R+ KEL L PP G+ + + IT ++G GT Y
Sbjct: 18 GSMASM-------QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEG 70
Query: 60 GYFKVKLLLSKNFPSVPPKAFFLTK--IFHPNVDTKNGEICVNTLKKDWNPDLGIKHILL 117
F++ S +P P+ F + HP+V NG IC++ L +DW+P L ++ + L
Sbjct: 71 EKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY-SNGHICLSILTEDWSPALSVQSVCL 129
Query: 118 TIKCLL 123
+I +L
Sbjct: 130 SIISML 135
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 114 bits (285), Expect = 6e-31
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 25/176 (14%)
Query: 2 NSMSNVENLSPQIIRRVSKELQDLTKTPPE----GIHVCINEEDITDVQAIIDGPAGTPY 57
+ + S RR+++E L+ + P + V +EE + ++ +I GPA TPY
Sbjct: 65 QVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPY 124
Query: 58 SNGYFKVKLLLSKNFPSVPPKAFFLTKI-----FHPNVDTKNGEICVNTLKK-------D 105
+NG F+ + +++PS PP T F+PN+ +G++C++ L
Sbjct: 125 ANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLY-NDGKVCLSILNTWHGRPEEK 183
Query: 106 WNPDLG-IKHILLTIKCLLIVPNP-------ESALNEEAGKLLLEHYDDYSRRATM 153
WNP +L++++ L++V P E + +G YD R+AT+
Sbjct: 184 WNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATV 239
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 103 bits (257), Expect = 4e-28
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 17/160 (10%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGI---HVCINEEDITDVQAIIDG-PAGTPYSNG------ 60
S Q R+ KEL+D+ ++ V + + + D + +P +
Sbjct: 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKE 84
Query: 61 -----YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKD-WNPDLGIKH 114
Y + NFP PP + + G +C+ L K W+ I+
Sbjct: 85 KEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIES 144
Query: 115 ILLTIKCLLIVPNPESALNEEAGKLLL-EHYDDYSRRATM 153
+++ I L+ + L Y+ +
Sbjct: 145 VIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQI 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.005
Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 43/199 (21%)
Query: 13 QIIRRVSKELQDLTKTP-------PEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVK 65
+I+ ++ L +L +T +G+ ++ ++ P+ TP Y
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGL----------NILEWLENPSNTP-DKDY---- 230
Query: 66 LLLSKNFP-SVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLI 124
LLS P S P + ++ H V K L+ G L+T +
Sbjct: 231 -LLS--IPISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 125 VPNPESALN--EEAGKLLL-------EHYDDYSRRATMMTEI--HAQASKCSKLGYK--S 171
+ ES +A +L E Y + S +++ + + + L +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 172 SESRQSNIE--NQHSDCSK 188
E Q + N H K
Sbjct: 346 QEQVQDYVNKTNSHLPAGK 364
Score = 34.3 bits (78), Expect = 0.019
Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 38/114 (33%)
Query: 5 SNVENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQA--IID-GPAGTPYSNGY 61
S++ LS I R+ + + + P + E T +A I+D GP G G
Sbjct: 466 SDLRVLSGSISERI---VDCIIRLP-------VKWETTTQFKATHILDFGPGGAS---G- 511
Query: 62 FKVKLLLSKNFPSVPPKAFFLTKIFHPNVD-TKNGEICVNTLKKDWNPDLGIKH 114
L + H N D T I TL + + D G K
Sbjct: 512 --------------------LGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 33.1 bits (75), Expect = 0.057
Identities = 27/195 (13%), Positives = 50/195 (25%), Gaps = 74/195 (37%)
Query: 5 SNVENLSPQIIRRVSKELQDLTKTPPEGI-HVCINE--------EDITDVQAIIDGPAGT 55
+ E L + + VS ++ + + ++C+ E DI + A + T
Sbjct: 56 TPAE-LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 56 PYSN------GYFKVKLLLSKNFPSVPPKAFF---------LTKIFHPNVDTKNGEICVN 100
Y +++ + F A F L IF G+
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-------GGQ---- 163
Query: 101 TLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYDDY--------SRRAT 152
G N + E L + Y Y A
Sbjct: 164 ----------G---------------NTDDYFEE-----LRDLYQTYHVLVGDLIKFSAE 193
Query: 153 MMTEIHAQASKCSKL 167
++E+ K+
Sbjct: 194 TLSELIRTTLDAEKV 208
Score = 26.9 bits (59), Expect = 5.4
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 30/144 (20%)
Query: 49 IDGPAGTPY--SNGYFKVKLLLSKNFPSVPPKAFF----LTKIFHPNVDTKNGEICVNTL 102
+D + P S+G + LL VP +FF L + F+ +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLL-------VPTASFFIASQLQEQFNKILPEPTEG-----F 48
Query: 103 KKDWNP----DLGIKHILLTIKCLLIVPNPESALNEEAGKLLLEHYD-DYSRRATMMTEI 157
D P +L K + L+ P+ ++ L L ++ Y +I
Sbjct: 49 AADDEPTTPAELVGKFLGYVSS--LVEPSKVGQF-DQVLNLCLTEFENCYLEG----NDI 101
Query: 158 HAQASKCSKLGYKSSESRQSNIEN 181
HA A+K + + + I+N
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKN 125
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus
thermophilus}
Length = 64
Score = 29.6 bits (67), Expect = 0.11
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
+++RR+++ L P E + V + E
Sbjct: 19 ELVRRLTEMASRLLGEPYEEVRVILYE 45
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family,
isomerase; 1.40A {Streptomyces achromogenes}
Length = 65
Score = 29.6 bits (67), Expect = 0.11
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
+ ++ + TP E + V + E
Sbjct: 18 ALGEALTAAAHETLGTPVEAVRVIVEE 44
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP}
SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Length = 62
Score = 29.6 bits (67), Expect = 0.11
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
+IR+VS+ + + P E + V I E
Sbjct: 18 TLIRQVSEAMANSLDAPLERVRVLITE 44
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas
pavonaceae} PDB: 3ej3_A 1s0y_A 3ej7_A
Length = 76
Score = 29.7 bits (67), Expect = 0.12
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
+ + + + + T P E I I E
Sbjct: 19 ALSAGLLRVISEATGEPRENIFFVIRE 45
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate
tautomerase, inhibitor, 2-FLUO hydroxycinnamate,
isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB:
2op8_A*
Length = 61
Score = 29.2 bits (66), Expect = 0.14
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
++ +V++ +++ T E I V I E
Sbjct: 18 NLVEKVTEAVKETTGASEEKIVVFIEE 44
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus
aureus}
Length = 63
Score = 29.2 bits (66), Expect = 0.16
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
++ V+ ++ T + IHV I E
Sbjct: 21 NLVSEVTDAVEKTTGANRQAIHVVIEE 47
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, hydrolase; 2.41A {Chloroflexus
aurantiacus}
Length = 72
Score = 29.3 bits (66), Expect = 0.16
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
++ R +S P + + I E
Sbjct: 19 ELARALSAAAAAAFDVPLAEVRLIIQE 45
>2eqo_A TNF receptor-associated factor 3-interacting protein 1;
STN_TRAF3IP1_ND domain, interleukin 13 receptor alpha
1-binding protein-1 [HOMO sapiens]; NMR {Homo sapiens}
Length = 140
Score = 29.9 bits (67), Expect = 0.23
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 22/111 (19%)
Query: 4 MSNVENLSPQIIRRVSKELQDLTKTPP-----------EGIHVCINEEDITDVQAIIDGP 52
S ++ ++RR + L + + PP +H DI + +I
Sbjct: 2 SSGSSGMNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLH------DI--ITEVI--- 50
Query: 53 AGTPYSNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK 103
T + G + + S N K FL K V + +
Sbjct: 51 RMTGFMKGLYTDAEMKSDNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPAR 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.23
Identities = 20/147 (13%), Positives = 40/147 (27%), Gaps = 56/147 (38%)
Query: 3 SMSNVENLSPQIIRRVSKEL---QDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSN 59
S + L P R++ L P + + + +DV +++
Sbjct: 360 ESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-------- 410
Query: 60 GYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPD-LGIKHILLT 118
L ++K + I I L
Sbjct: 411 --LHKYSL----------------------------------VEKQPKESTISIPSIYLE 434
Query: 119 IKCLLIVPNPESALNEEAGKLLLEHYD 145
+K L E AL+ + +++HY+
Sbjct: 435 LKVKL---ENEYALH----RSIVDHYN 454
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase,
catalytic proline, hexamer, BE beta, isomerase; 1.90A
{Helicobacter pylori} PDB: 2orm_A
Length = 67
Score = 27.8 bits (62), Expect = 0.61
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
Q+I VS + + I V I+E
Sbjct: 21 QLIEGVSDLMVKVLNKNKASIVVIIDE 47
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle,
beta-alpha-beta, catalytic proline, isomerase; 2.37A
{Archaeoglobus fulgidus}
Length = 62
Score = 25.9 bits (57), Expect = 2.3
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINEEDITDV 45
+ + R++ ++ I + I+E +V
Sbjct: 17 EFVERLTSVAAEIYGMDRSAITILIHEPPAENV 49
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding
protein; 2.20A {Bovine immunodeficiency virus} PDB:
3kkr_A
Length = 152
Score = 26.9 bits (60), Expect = 2.7
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 79 AFFLTKIFH----PNVDTKNGEICVNTLKKDWNPDLGIKHIL 116
A + ++ ++ + NG ++ LGI
Sbjct: 42 ALCILQLIQRYTVLHLHSDNGPCFTAHRIENLCKYLGITKTT 83
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 26.9 bits (60), Expect = 4.5
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 23 QDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGY 61
D+ P G+ + D + + G G P +
Sbjct: 69 SDMRANYPFGLVAGDMKRDGVRIHS-SSGTTGNPTVIVH 106
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 26.4 bits (59), Expect = 6.4
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 99 VNTLKKDWNPDLGIKHILLT 118
+ L++ +NP L + +
Sbjct: 201 LIDLQEQFNPGLDMIGFVPY 220
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2
function project, S2F, unknown function; HET: GLU; 2.08A
{Haemophilus influenzae} SCOP: d.80.1.4
Length = 128
Score = 25.6 bits (56), Expect = 6.5
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
++I+ + EL+ + + I E
Sbjct: 77 RLIKMLFSELEYKLGIRAHDVEITIKE 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.384
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,837,871
Number of extensions: 163701
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 77
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.7 bits)