RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15654
(189 letters)
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 134 bits (338), Expect = 3e-41
Identities = 101/151 (66%), Positives = 123/151 (81%), Gaps = 1/151 (0%)
Query: 8 ENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLL 67
ENL P IIR V KE+ LT PP+GI V NEED+TD+Q I+GP GTPY+ G F++KLL
Sbjct: 1 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLL 60
Query: 68 LSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPN 127
L K+FP+ PPK +FLTKIFHPNV NGEICVN LK+DW +LGI+H+LLTIKCLLI PN
Sbjct: 61 LGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPN 119
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIH 158
PESALNEEAG+LLLE+Y++Y+ RA ++TEIH
Sbjct: 120 PESALNEEAGRLLLENYEEYAARARLLTEIH 150
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 126 bits (317), Expect = 4e-38
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+R+ KEL ++T PP ++I + ++ I GP G+ Y G F + + S ++P
Sbjct: 4 AKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 63
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+H N+++ G IC++ LK +W+P L I +LL+I LL NP L
Sbjct: 64 KPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG 122
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
+ + ++ R A T+ +A
Sbjct: 123 SIATQYMTNRAEHDRMARQWTKRYA 147
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 124 bits (311), Expect = 3e-37
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
++R+ KELQDL + PP +D+ QA I GP +PY G F + + ++P
Sbjct: 3 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 62
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F T+I+HPN+++ NG IC++ L+ W+P L I +LL+I LL PNP+ L
Sbjct: 63 KPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E ++ + Y++ A T+ +A
Sbjct: 122 EIARIYKTDRERYNQLAREWTQKYA 146
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 120 bits (301), Expect = 1e-35
Identities = 50/148 (33%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
+ +R+ KE + L P GI +++++ Q I+GP +PY +G F+++L L ++
Sbjct: 3 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESAL 132
P PK FLTKI+HPN+D G IC++ LK +W+P L I+ +LL+I+ LL PNP L
Sbjct: 63 PMEAPKVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121
Query: 133 NEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+ + +++ +A T+++A+
Sbjct: 122 ANDVAEDWIKNEQGAKAKAREWTKLYAK 149
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 119 bits (298), Expect = 3e-35
Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+R+ KE+Q + P I + ++E DI ++ GP GTPY G F V + + +P
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F TK++HPN+ + G IC++ LK W+P + +K L++++ LL P P +
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHA 159
E + L + +++ A + T ++A
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYA 148
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 118 bits (297), Expect = 3e-35
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 1/144 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ KE Q L P GI +E + +I GP +P+ G FK++L L + +P
Sbjct: 5 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PK F+TKI+HPNVD G IC++ LK W+P L I+ +LL+I+ LL PNP+ L +
Sbjct: 65 APKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 123
Query: 136 AGKLLLEHYDDYSRRATMMTEIHA 159
+ + A T ++A
Sbjct: 124 VAEQWKTNEAQAIETARAWTRLYA 147
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 117 bits (294), Expect = 1e-34
Identities = 40/159 (25%), Positives = 87/159 (54%), Gaps = 9/159 (5%)
Query: 4 MSNVENLSPQIIRRVSKELQDLTKTPP---EGIHVCINEEDITDVQAIIDGPAGTPYSNG 60
M+N+ ++R+ +E +++ K+ I V + +E+ T+++ I GP TPY G
Sbjct: 1 MANI------AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGG 54
Query: 61 YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIK 120
+++++ + + +P PPK F+TKI+HPN+ + G IC++ LK W + ++ +LL+++
Sbjct: 55 RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 114
Query: 121 CLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
LL P+ + ++ + + + A + ++A
Sbjct: 115 ALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 117 bits (294), Expect = 1e-34
Identities = 38/144 (26%), Positives = 60/144 (41%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RV KEL+DL K PP + +++ V + P PY F +++ +P
Sbjct: 3 MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFK 62
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP F TKI+HPNVD ++W P +L + L+ PN L +
Sbjct: 63 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 122
Query: 136 AGKLLLEHYDDYSRRATMMTEIHA 159
LL ++ + + + A T
Sbjct: 123 LADLLTQNPELFRKNAEEFTLRFG 146
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 116 bits (291), Expect = 3e-34
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ ++ + + + P G+ +++ A+I GPA TPY +G F++ L + +P+
Sbjct: 6 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 65
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP FL+++FHPNV NGEIC++ L+ W P + IL +I+ L PNP S N E
Sbjct: 66 PPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVE 124
Query: 136 AGKLLLEHYDDYSRRATMMTEIHAQ 160
A L +H Y +R E +
Sbjct: 125 AATLFKDHKSQYVKRVKETVEKSWE 149
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 114 bits (286), Expect = 2e-33
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 13/158 (8%)
Query: 16 RRVSKELQDLTKT-------------PPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYF 62
R+ KEL D+ + G+ I DI + I GP GTPY G+F
Sbjct: 4 ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHF 63
Query: 63 KVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCL 122
+ +++ ++P PPK F+TKI+HPN+ ++ G IC++ LK +W+P L I+ LL+I+ +
Sbjct: 64 TLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAM 123
Query: 123 LIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
L P P + E K+++E++ + + A + TE A+
Sbjct: 124 LADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK 161
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 113 bits (283), Expect = 7e-33
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 16 RRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+ K+L D+ + P +G +++ DI + ++ GP T Y G+FK L +++P
Sbjct: 3 LLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQ 62
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKK-------------DWNPDLGIKHILLTIKC 121
PPK F+++I+HPN+D G +C++ L W P ++ ILL++
Sbjct: 63 KPPKMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVIS 121
Query: 122 LLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+L PN ES N +A K+ E+Y ++ ++ +
Sbjct: 122 MLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 160
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 112 bits (281), Expect = 1e-32
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
+ + ++ DL + +GI ED+ + + I+G + + F++ + + +
Sbjct: 4 RAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEY 63
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPNPES 130
PP F+T FHPNVD G+ C++ L + WN + + ILL ++ +L P E+
Sbjct: 64 NYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLEN 123
Query: 131 ALNEEAGKLLLEHYDDYSRRATM 153
+N EA ++L++ Y +
Sbjct: 124 PVNLEAARILVKDESLYRTILRL 146
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 111 bits (277), Expect = 4e-32
Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ ++ + L + PP G+ E++I +AII GP TP+ +G FK+ L ++ +P+
Sbjct: 6 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 65
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PP F++K+FHPNV +G IC++ L+ W+P + IL +I+ LL PNP S N
Sbjct: 66 PPTVKFISKMFHPNVY-ADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSL 124
Query: 136 AGKLLLEHYDDYSRRATMMTE 156
A +L E+ +Y +R + E
Sbjct: 125 AAQLYQENRREYEKRVQQIVE 145
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 109 bits (274), Expect = 1e-31
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 5/152 (3%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNF 72
Q R+ +EL L PP GI +++ + D++A I G A TPY G FK+++++ + +
Sbjct: 2 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERY 61
Query: 73 PSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKD----WNPDLGIKHILLTIKCLLIVPNP 128
P PP+ FLT I+HPN+D+ G IC++ LK W P L I +L +I+ L+ PNP
Sbjct: 62 PFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 120
Query: 129 ESALNEEAGKLLLEHYDDYSRRATMMTEIHAQ 160
+ L + + + + A TE HA+
Sbjct: 121 DDPLMADISSEFKYNKPAFLKNARQWTEKHAR 152
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 107 bits (269), Expect = 9e-31
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 14 IIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
+ +R+ +EL+ L + GI + +++ A +DGP T Y + +K+ L ++P
Sbjct: 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69
Query: 74 SVPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALN 133
PP F T +HPNVD +G IC++ LK++W ++ ILL+++ LL PN S LN
Sbjct: 70 YKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLN 128
Query: 134 EEAGKLLLEHYDDYSRRA 151
+A + + +Y +
Sbjct: 129 AQAAD-MWSNQTEYKKVL 145
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 106 bits (266), Expect = 2e-30
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+R+ +EL L + +GI +++ I G AGT Y + +K+ L +P
Sbjct: 4 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 63
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
P FLT +HPNVDT G I ++ LK+ W+ ++ ILL+I+ LL PN +S LN
Sbjct: 64 APTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 122
Query: 136 AGKLLLEHYDDYSRRATMMTEIHA 159
A + L ++ + +
Sbjct: 123 AAE-LWKNPTAFKKYLQETYSKQV 145
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 106 bits (265), Expect = 2e-30
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Query: 16 RRVSKELQDLTKTPPEGIH-VCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
RR+ KEL+++ K + + ++E ++ Q +I P PY G F++++ +P
Sbjct: 2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 60
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNE 134
PPK F TKI+HPN+D K ++W P ++ ++ L+ P PE L
Sbjct: 61 KPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 120
Query: 135 EAGKLLLEHYDDYSRRATMMTEIH 158
+ + + + + A T+ +
Sbjct: 121 DLAEEYSKDRKKFCKNAEEFTKKY 144
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 106 bits (266), Expect = 2e-30
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR+ ++ L ++ E + + GP GTPY G +KV++ L +P
Sbjct: 6 RRMDTDVVKLIESKHEVT----ILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFK 61
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILL-TIKCLLIVPNPESALNE 134
P F+ KIFHPN+D +G +C++ + + W + +I + LL PNP LN
Sbjct: 62 SPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNG 121
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHAQ 160
+A + L ++Y ++ + +A
Sbjct: 122 DAAAMYLHRPEEYKQKIKEYIQKYAT 147
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 106 bits (264), Expect = 5e-30
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEE-----DITDVQAIIDGPAGTPYSNGYFKVKLLLS 69
+ R+++E + K P G + ++ + + I G GTP+ G FK+++L
Sbjct: 4 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFK 63
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK--KDWNPDLGIKHILLTIKCLLIVPN 127
++PS PPK F +FHPNV + ++ L+ KDW P + IK ILL I+ LL PN
Sbjct: 64 DDYPSSPPKCKFEPPLFHPNVYPSG-TVSLSILEEDKDWRPAITIKQILLGIQELLNEPN 122
Query: 128 PESALNEEAGKLLLEHYDDYSRRATMMTEIHAQA 161
+ EA + ++ +Y +R + A +
Sbjct: 123 IQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 156
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 106 bits (264), Expect = 5e-30
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 15/163 (9%)
Query: 11 SPQIIRRVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLS 69
S +R+ KELQ L K P GI +E +I +I GP TPY++G F KL
Sbjct: 1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFP 60
Query: 70 KNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKHIL 116
K++P PPK F I HPN+ NGE+C++ L ++ W+P ++ IL
Sbjct: 61 KDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 119
Query: 117 LTIKCLLIVPNPESALNEEAGKLLLEHYDDYSRRATMMTEIHA 159
L++ +L PN ES N +A L ++ ++ R+ +
Sbjct: 120 LSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSL 162
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 104 bits (260), Expect = 2e-29
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
R+ K++ +L I + +D+ + + +I P Y +G F + + +P
Sbjct: 6 LRIQKDINELNLPKTCDISFS-DPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHD 63
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
PPK T ++HPN+D G +C+N L++DW P L I I+ ++ L + PNPE LN+E
Sbjct: 64 PPKVKCETMVYHPNID-LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKE 122
Query: 136 AGKLLLEHYDDYSRRA 151
A ++L + + +
Sbjct: 123 AAEVLQNNRRLFEQNV 138
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 103 bits (257), Expect = 6e-29
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
RR + L + + ++ + + + GP GTPY +G + + + L ++P
Sbjct: 3 RRREMDYMRLCNSTRK-VYP---SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFK 58
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKC-LLIVPNPESALNE 134
P F +I HPNVD ++G +C++ + + W P +++I LL PNP LN
Sbjct: 59 SPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNV 118
Query: 135 EAGKLLLEHYDDYSRRATMMTEIHAQASK 163
+A LL + HA K
Sbjct: 119 QAAHLLHADRVGFDALLREHVSTHATPQK 147
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 101 bits (252), Expect = 8e-29
Identities = 32/107 (29%), Positives = 54/107 (50%)
Query: 17 RVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSVP 76
R+ KEL + PP + ++ +I G T Y+N +K+K++ ++P P
Sbjct: 2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61
Query: 77 PKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
P +FL K NG+IC++ L D+NP L I ++L+I +L
Sbjct: 62 PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 108
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 100 bits (249), Expect = 5e-28
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 16 RRVSKELQDLTKTPPEGIHVCINEED----ITDVQAIIDGPAGTPYSNGYFKVKLLLSKN 71
R+ +EL++ K +G E+D +T +I GP T Y N + +K+
Sbjct: 8 FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 67
Query: 72 FPSVPPKAFFLTKIFHPNVDTKNGEICVNTL--KKDWNPDLGIKHILLTIKCLLIVP-NP 128
+P PP F+TKI V++ NG + + W IK +L ++ L++ N
Sbjct: 68 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 127
Query: 129 ESALNEEA 136
+ E
Sbjct: 128 KLPQPPEG 135
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 100 bits (249), Expect = 8e-28
Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 3/155 (1%)
Query: 15 IRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPS 74
+R+ ++ + K P I +I + ++ GP TPY GY+ KL+ + FP
Sbjct: 3 TQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPF 62
Query: 75 VPPKAFFLTKIFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLIVPNPES---A 131
PP + +T +T+ + WNP + IL + ++ P
Sbjct: 63 KPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIE 122
Query: 132 LNEEAGKLLLEHYDDYSRRATMMTEIHAQASKCSK 166
++ + L ++ + + E+ + + K
Sbjct: 123 TSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIK 157
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 96.6 bits (240), Expect = 6e-27
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 16 RRVSKELQDLTKTPPEGIHVCI--NEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFP 73
+R+ KEL L PP G+ + + IT ++G GT Y F++ S +P
Sbjct: 6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 65
Query: 74 SVPPKAFFLTKIF--HPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLL 123
P+ F + HP+V NG IC++ L +DW+P L ++ + L+I +L
Sbjct: 66 FDSPQVMFTGENIPVHPHVY-SNGHICLSILTEDWSPALSVQSVCLSIISML 116
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 94.7 bits (235), Expect = 5e-26
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 15/124 (12%)
Query: 17 RVSKELQDLTKTPPEGIHVC-INEEDITDVQAIIDGPAGTPYSNGYFKVKLLLSKNFPSV 75
+ ++L +L K P EG I++ D+ + +I GP T Y G FK L K++P
Sbjct: 3 LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 62
Query: 76 PPKAFFLTKIFHPNVDTKNGEICVNTL-------------KKDWNPDLGIKHILLTIKCL 122
PPK F+T+I+HPNVD KNG++C++ L ++ W P ++ I++++ +
Sbjct: 63 PPKMKFITEIWHPNVD-KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISM 121
Query: 123 LIVP 126
L P
Sbjct: 122 LADP 125
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 93.2 bits (231), Expect = 2e-25
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 16 RRVSKELQDLTK-TPPEGIHVCINEEDITDV---QAIIDGPAGTPYSNGYFKVKLLLSKN 71
R+ +EL+ K PE + + D + I GP + + N + + + N
Sbjct: 7 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPN 66
Query: 72 FPSVPPKAFFLTKIFHPNVDTKNGEICVNTLK-KDWNPDLGIKHILLTIKCLLIVPNPES 130
+P PPK F++KI P V+ GE+ + +DW ++ +LL ++ + P +
Sbjct: 67 YPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKK 126
Query: 131 ALNEEAGKL 139
+ G+
Sbjct: 127 LRQPKEGET 135
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 80.7 bits (198), Expect = 3e-20
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 17/160 (10%)
Query: 11 SPQIIRRVSKELQDLTKTPPEG---IHVCINEEDITDVQAIIDG-PAGTPYSNG------ 60
S Q R+ KEL+D+ ++ V + + + D + +P +
Sbjct: 2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKE 61
Query: 61 -----YFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTKNGEICVNTLKKD-WNPDLGIKH 114
Y + NFP PP + + G +C+ L K W+ I+
Sbjct: 62 KEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIES 121
Query: 115 ILLTIKCLLIVPNPESALNEEAGK-LLLEHYDDYSRRATM 153
+++ I L+ + L Y+ +
Sbjct: 122 VIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQI 161
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 68.4 bits (167), Expect = 8e-16
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 12 PQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIIDGPAGTPYSNGYFK--VKLLLS 69
+ R + + L K + + + + + G PY + + L L
Sbjct: 16 RDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLL 75
Query: 70 KNFPSVPPKAFFLTK-----IFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLTIKCLLI 124
+P PP F +VD NG+I + L + +P + ++ + +
Sbjct: 76 DTYPYNPPICFVKPTSSMTIKTGKHVDA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFG 134
Query: 125 VPNP 128
P
Sbjct: 135 DEPP 138
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 56.9 bits (137), Expect = 2e-11
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 16 RRVSKELQDLTKTPPEGIHVC---INEEDITDVQAIIDGPAGTPYSNG---YFKVKLLLS 69
R + L + + + I G T V + +
Sbjct: 22 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVP 81
Query: 70 KNFPSVPPKAFFLTK-----------IFHPNVDTKNGEICVNTLKKDWNPDLGIKHILLT 118
+P PP + +D NG I + L + + ++
Sbjct: 82 SMYPVKPPFISINLENFDMNTISSSLPIQEYID-SNGWIALPILHCWDPAAMNLIMVVQE 140
Query: 119 IKCLLIVPNP 128
+ LL P
Sbjct: 141 LMSLLHEPPQ 150
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas
sp., DmpI [TaxId: 306]}
Length = 59
Score = 28.4 bits (64), Expect = 0.086
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
+IR+VS+ + + P E + V I E
Sbjct: 18 TLIRQVSEAMANSLDAPLERVRVLITE 44
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase
alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId:
47881]}
Length = 62
Score = 25.8 bits (57), Expect = 0.78
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
+ + + + + T P E I I E
Sbjct: 18 ALSAGLLRVISEATGEPRENIFFVIRE 44
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase,
MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
Length = 129
Score = 26.7 bits (59), Expect = 0.95
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
+ ++ L+ P+ + V + E
Sbjct: 82 CFYKLLTGALERDCGISPDDVIVALVE 108
>d1u9da_ d.80.1.5 (A:) Hypothetical protein VC0714 {Vibrio
cholerae [TaxId: 666]}
Length = 122
Score = 26.7 bits (59), Expect = 0.96
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 7 VENLSPQIIRRVSKELQDLTKTPPEGIHV-CINEEDITD 44
VE+L P ++ EL L T IN + +
Sbjct: 29 VESLVPTLL----NELSSLLSTARNAFTFELINTQYFAE 63
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 25.5 bits (56), Expect = 1.5
Identities = 1/27 (3%), Positives = 9/27 (33%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
+ ++ + + I + + +
Sbjct: 19 ALAADITDVIIRHLNSKDSSISIALQQ 45
>d1nj8a2 d.68.5.1 (A:394-455) C-terminal domain of ProRS {Archaeon
(Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 62
Score = 25.3 bits (55), Expect = 1.6
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 101 TLKKDWNPDLGIKHILLTIKCLLIVPNPESALNEE 135
T+ +D NPD IK+IL + +++VP E NEE
Sbjct: 2 TILEDINPD-EIKNILSEKRGVILVPFKEEIYNEE 35
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 24.6 bits (54), Expect = 2.6
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 20/76 (26%)
Query: 38 NEEDITDVQAIIDGPAGTPY----SNGYFKVKLLLSKNFPSVPPKAFFLTKIFHPNVDTK 93
+ + + +++ A G + L +P T ++D
Sbjct: 15 GRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERL------LP-----YTGQCVLSIDLA 63
Query: 94 NGEICVNTLKKDWNPD 109
GE+ V DW+ D
Sbjct: 64 AGEMRV-----DWDAD 74
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 25.9 bits (56), Expect = 3.5
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 1 MNSMSN-VENLSPQIIRRVSKELQDLTKTPPEGIHVCINEEDITDVQAIID 50
M +S V+ + P V+ + +L + + + + E D + + +
Sbjct: 1 MRGLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKE 51
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus
influenzae [TaxId: 727]}
Length = 120
Score = 24.4 bits (53), Expect = 7.1
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 13 QIIRRVSKELQDLTKTPPEGIHVCINE 39
++I+ + EL+ + + I E
Sbjct: 77 RLIKMLFSELEYKLGIRAHDVEITIKE 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.384
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 706,412
Number of extensions: 32775
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 42
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.5 bits)