Query psy15655
Match_columns 110
No_of_seqs 111 out of 1049
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:13:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10447 HflBKC-binding inner 100.0 2.4E-28 5.3E-33 183.8 11.6 94 11-110 126-219 (219)
2 COG0670 Integral membrane prot 99.9 5.3E-25 1.2E-29 167.0 10.6 92 11-106 137-228 (233)
3 cd06181 BI-1-like BAX inhibito 99.9 1.2E-24 2.6E-29 161.0 11.6 96 11-107 117-212 (212)
4 PF01027 Bax1-I: Inhibitor of 99.8 1.4E-20 3E-25 137.3 9.7 90 11-104 115-205 (205)
5 KOG2322|consensus 99.7 4.4E-18 9.5E-23 128.8 8.0 76 12-92 161-237 (237)
6 KOG1629|consensus 99.7 3.7E-17 8E-22 121.6 7.5 95 12-109 131-225 (235)
7 KOG1630|consensus 99.6 7.2E-16 1.6E-20 118.6 2.9 97 10-106 226-331 (336)
8 PF12811 BaxI_1: Bax inhibitor 96.9 0.01 2.2E-07 46.5 8.9 91 19-110 176-274 (274)
9 COG4760 Predicted membrane pro 68.4 53 0.0011 25.4 10.1 54 51-109 220-275 (276)
10 COG3887 Predicted signaling pr 52.2 85 0.0019 27.7 7.5 51 18-68 8-58 (655)
11 PF14147 Spore_YhaL: Sporulati 51.6 27 0.00059 20.8 3.2 22 47-68 4-25 (52)
12 PF14126 DUF4293: Domain of un 51.5 84 0.0018 22.2 10.1 84 22-109 55-139 (149)
13 COG4243 Predicted membrane pro 48.3 1E+02 0.0023 22.3 10.1 72 17-103 71-142 (156)
14 PF11241 DUF3043: Protein of u 44.2 1.1E+02 0.0024 22.4 6.1 47 18-68 76-122 (170)
15 PF10777 YlaC: Inner membrane 39.5 1.5E+02 0.0032 21.5 6.1 61 7-68 23-85 (155)
16 PHA03048 IMV membrane protein; 37.0 1.3E+02 0.0027 20.0 5.4 19 21-40 13-31 (93)
17 KOG4474|consensus 35.0 2.2E+02 0.0048 22.3 7.9 26 45-70 80-105 (253)
18 PHA02680 ORF090 IMV phosphoryl 34.9 1.4E+02 0.0029 19.8 5.6 21 19-40 11-31 (91)
19 PF05884 ZYG-11_interact: Inte 34.0 1.7E+02 0.0036 23.5 6.1 49 13-61 96-147 (299)
20 PF12650 DUF3784: Domain of un 34.0 1.3E+02 0.0028 19.2 5.4 31 10-40 36-67 (97)
21 PF04156 IncA: IncA protein; 33.8 1.7E+02 0.0038 20.7 6.5 17 46-62 42-58 (191)
22 PRK13454 F0F1 ATP synthase sub 33.0 1.4E+02 0.003 21.6 5.2 20 6-25 17-36 (181)
23 PF05767 Pox_A14: Poxvirus vir 29.9 1.7E+02 0.0037 19.4 5.6 17 51-67 53-69 (92)
24 PF12576 DUF3754: Protein of u 28.9 2E+02 0.0044 19.9 6.2 29 5-33 53-81 (141)
25 COG4395 Uncharacterized protei 28.3 1.8E+02 0.0038 23.1 5.3 54 14-67 27-84 (281)
26 PRK05415 hypothetical protein; 26.6 3.5E+02 0.0076 22.0 6.9 39 17-55 64-109 (341)
27 PF13829 DUF4191: Domain of un 26.1 2.1E+02 0.0046 21.9 5.3 46 11-56 19-65 (224)
28 KOG2678|consensus 25.9 74 0.0016 24.6 2.8 27 14-40 209-235 (244)
29 PHA02898 virion envelope prote 24.7 2.2E+02 0.0047 18.9 4.9 20 51-70 53-72 (92)
30 PF11317 DUF3119: Protein of u 24.0 1.2E+02 0.0026 20.9 3.3 18 51-68 30-47 (116)
31 PRK01100 putative accessory ge 23.9 3E+02 0.0066 20.3 8.6 37 37-76 164-200 (210)
32 PF00916 Sulfate_transp: Sulfa 23.5 2.1E+02 0.0046 21.3 4.9 30 50-82 249-278 (280)
33 PHA02513 V1 structural protein 23.3 1.2E+02 0.0027 21.1 3.2 31 5-35 53-83 (135)
34 PHA00027 lys lysis protein 22.7 1.9E+02 0.004 17.4 3.8 27 78-104 18-46 (58)
35 PF02392 Ycf4: Ycf4; InterPro 21.8 3.2E+02 0.0069 20.3 5.4 53 18-71 20-87 (180)
36 PF08122 NDUF_B12: NADH-ubiqui 21.7 91 0.002 18.6 2.1 13 52-64 33-45 (57)
37 PF10958 DUF2759: Protein of u 20.0 2.1E+02 0.0046 17.0 5.3 35 30-64 8-42 (52)
No 1
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=183.81 Aligned_cols=94 Identities=27% Similarity=0.434 Sum_probs=89.2
Q ss_pred cCCcCchhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCchhHHHHHHHHH
Q psy15655 11 YPPYGQGLESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEYIFASLNLY 90 (110)
Q Consensus 11 ~~k~dft~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~i~~Al~LY 90 (110)
.|||||+++|++++++++++++++++++|++++..+.+++++|+++||+|++||||+|+++ ++|||+.||++||
T Consensus 126 ~tk~Dfs~lg~~L~~~l~~li~~~l~~~F~~s~~~~~~~s~~g~llfsgyilyDTq~Ii~~------g~~dyi~aAl~LY 199 (219)
T PRK10447 126 TTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHG------GETNYIRATVSLY 199 (219)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CchHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999842 4799999999999
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q psy15655 91 LDVINIFLSILQILGAANSD 110 (110)
Q Consensus 91 lDiinlFl~iL~il~~~~~d 110 (110)
+|++|+|+++|||+++++||
T Consensus 200 lDiinlFl~lL~il~~~~~~ 219 (219)
T PRK10447 200 VSLYNIFVSLLSILGFASRD 219 (219)
T ss_pred HHHHHHHHHHHHHHccccCC
Confidence 99999999999999998876
No 2
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=99.92 E-value=5.3e-25 Score=166.97 Aligned_cols=92 Identities=35% Similarity=0.522 Sum_probs=86.8
Q ss_pred cCCcCchhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCchhHHHHHHHHH
Q psy15655 11 YPPYGQGLESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEYIFASLNLY 90 (110)
Q Consensus 11 ~~k~dft~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~i~~Al~LY 90 (110)
+||+|+++++++++++++++++++++++|.++|.++.++|++|+++|+++++||||+|++ .+..++.++.+|++||
T Consensus 137 ~tk~Dls~l~~~l~~aligLiiasvvn~Fl~s~~l~~~IS~lgvlifsgli~yDtq~I~~----~~~~~~~~i~~AlsLY 212 (233)
T COG0670 137 TTKRDLSSLGSFLFMALIGLIIASLVNIFLGSSALHLAISVLGVLIFSGLIAYDTQNIKR----MEGGERLAIMGALSLY 212 (233)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccchhHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999974 1456889999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy15655 91 LDVINIFLSILQILGA 106 (110)
Q Consensus 91 lDiinlFl~iL~il~~ 106 (110)
+|++|+|+++||++|.
T Consensus 213 ldfiNlF~~LL~i~g~ 228 (233)
T COG0670 213 LDFINLFLSLLRILGI 228 (233)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999985
No 3
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=99.92 E-value=1.2e-24 Score=160.96 Aligned_cols=96 Identities=44% Similarity=0.803 Sum_probs=88.8
Q ss_pred cCCcCchhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCchhHHHHHHHHH
Q psy15655 11 YPPYGQGLESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEYIFASLNLY 90 (110)
Q Consensus 11 ~~k~dft~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~i~~Al~LY 90 (110)
.+|+|++++|++++++++++++.+++++|++++..+.+++++|+++|++|++||||+++++.+ ++.++|||+.+|++||
T Consensus 117 ~tk~d~~~~g~~l~~~~~~l~~~~l~~~f~~~~~~~~~~~~~g~~lf~~~l~~Dtq~i~~~~~-~~~~~~d~i~~al~Ly 195 (212)
T cd06181 117 TTKRDFSFLGGFLFMGLIVLIVASLVNIFLQSPALQLAISALGVLLFSGYILYDTQLIIGGYR-LYLSPDDYILAALSLY 195 (212)
T ss_pred hccccHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCcchHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999999987533 2357999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy15655 91 LDVINIFLSILQILGAA 107 (110)
Q Consensus 91 lDiinlFl~iL~il~~~ 107 (110)
+|++|+|+++||++|++
T Consensus 196 lDiinlF~~iL~il~~~ 212 (212)
T cd06181 196 LDIINLFLSLLRILGSR 212 (212)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999999864
No 4
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=99.84 E-value=1.4e-20 Score=137.28 Aligned_cols=90 Identities=43% Similarity=0.786 Sum_probs=81.9
Q ss_pred cCCcCchhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCchhH-HHHHHHH
Q psy15655 11 YPPYGQGLESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEY-IFASLNL 89 (110)
Q Consensus 11 ~~k~dft~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~-i~~Al~L 89 (110)
.+|+|++.++++++.++.++++++++++|++++..+.+++++|+++|++|++||||++++ ++.++||+ +.+|++|
T Consensus 115 ~~~~d~~~~~~~l~~~l~~l~i~~l~~~f~~~~~~~~~is~~~~~lf~~~l~~Dt~~i~~----~~~~~~~~~i~~Al~L 190 (205)
T PF01027_consen 115 FTKRDFTRWGGILFIGLIGLIIFGLVSIFLPSSPLYLLISYIGILLFSLYLVYDTQRIIR----RYFSPDDYAIIAALSL 190 (205)
T ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHccchHHHHHHHHHH
Confidence 469999999999999999999999999999988999999999999999999999999963 22346776 9999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy15655 90 YLDVINIFLSILQIL 104 (110)
Q Consensus 90 YlDiinlFl~iL~il 104 (110)
|+|++|+|+++||++
T Consensus 191 y~d~i~lF~~iL~ll 205 (205)
T PF01027_consen 191 YLDIINLFLRILRLL 205 (205)
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999999999985
No 5
>KOG2322|consensus
Probab=99.75 E-value=4.4e-18 Score=128.80 Aligned_cols=76 Identities=53% Similarity=0.980 Sum_probs=69.6
Q ss_pred CCcCchhhhHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCchhHHHHHHHHH
Q psy15655 12 PPYGQGLESPVLFVCVIVLMIFGIVMIF-FHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEYIFASLNLY 90 (110)
Q Consensus 12 ~k~dft~~g~~L~~~l~~liv~~l~~~f-~~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~i~~Al~LY 90 (110)
||+|||.+|+.++..++++++++++..+ ..+++++.+++.+|+++|++|++||||++++ +.+|||||.||+++|
T Consensus 161 tK~DFt~~~~~l~~~l~vl~~~g~I~~~f~~~~~~~~vya~lgAllf~~yl~~Dtqllm~-----~~SPEEYI~aA~~lY 235 (237)
T KOG2322|consen 161 TKYDFTSLGGFLFALLIVLLLFGLIFLFFPYGPILVMVYAALGALLFCGYLVYDTQLLMG-----RISPEEYIFAALNLY 235 (237)
T ss_pred eccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHhhhHHHhc-----cCCHHHHHHHHHHhh
Confidence 5999999999999999999999955544 4689999999999999999999999999995 458999999999999
Q ss_pred HH
Q psy15655 91 LD 92 (110)
Q Consensus 91 lD 92 (110)
+|
T Consensus 236 lD 237 (237)
T KOG2322|consen 236 LD 237 (237)
T ss_pred cC
Confidence 98
No 6
>KOG1629|consensus
Probab=99.70 E-value=3.7e-17 Score=121.55 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=88.8
Q ss_pred CCcCchhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCchhHHHHHHHHHH
Q psy15655 12 PPYGQGLESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEYIFASLNLYL 91 (110)
Q Consensus 12 ~k~dft~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~i~~Al~LYl 91 (110)
.||++.++|+.|..++..+...++.+.||+|.+....-.|+|+++|++|+++|||.|+ +|.+.++.||+.+|+.+|.
T Consensus 131 rrreYLylGg~L~s~~s~l~wl~l~n~~fgS~~v~~~qLY~Gllvfvg~ivvdTQ~Ii---EKah~GdmDyv~Hsl~lf~ 207 (235)
T KOG1629|consen 131 RRREYLYLGGLLSSGLSLLLWLSLANSFFGSIWVFKFQLYVGLLVFVGFIVVDTQEII---EKAHHGDMDYVQHSLDLFT 207 (235)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhheeEEeeHHHHH---HHHhcCChHHHHHHHHHHH
Confidence 4789999999999999999999999999999899999999999999999999999998 6677789999999999999
Q ss_pred HHHHHHHHHHHHHhhccC
Q psy15655 92 DVINIFLSILQILGAANS 109 (110)
Q Consensus 92 DiinlFl~iL~il~~~~~ 109 (110)
|++.+|.+||.|+-.++.
T Consensus 208 dfvsvF~riLiIl~~~~~ 225 (235)
T KOG1629|consen 208 DFVSVFRRILIILAMNEA 225 (235)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999999877554
No 7
>KOG1630|consensus
Probab=99.58 E-value=7.2e-16 Score=118.58 Aligned_cols=97 Identities=28% Similarity=0.396 Sum_probs=83.7
Q ss_pred CcCCcCchhhhHHHHHHHHHHHHHHHHHHHhchh-----HHHHHHHHHHHHHHHHHHHHHhHHhhccccccc---C-Cch
Q psy15655 10 GYPPYGQGLESPVLFVCVIVLMIFGIVMIFFHGK-----VMTLIYASLGAILFSVYLIYDTQLMIGGNHRYS---I-SPE 80 (110)
Q Consensus 10 ~~~k~dft~~g~~L~~~l~~liv~~l~~~f~~~~-----~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~---~-~~~ 80 (110)
|=|...|..+|++|-+|+-++++.++.++|.|++ -+..+..+.|+++||+|++||||++.+..++|. . .+.
T Consensus 226 cAPSeKFL~MggPLaiGlGvVFvssl~sm~LPPtta~GA~LaSmslYGGLiLFS~FLLYDTQr~vk~ae~ypq~s~~~~~ 305 (336)
T KOG1630|consen 226 CAPSEKFLNMGGPLAIGLGVVFVSSLGSMFLPPTTALGAGLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNY 305 (336)
T ss_pred cCcHHHHhhcCCCceeeeeeEehhhhhhhhcCCchhhhhhhHHHHHhccHHHHHHHHHHhHHHHHHHHHhCcchhccCCC
Confidence 5567889999999999999999999999999743 366777899999999999999999986555542 2 237
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15655 81 EYIFASLNLYLDVINIFLSILQILGA 106 (110)
Q Consensus 81 d~i~~Al~LYlDiinlFl~iL~il~~ 106 (110)
|+|.+++++|+|..|+|++|.-|++.
T Consensus 306 dPin~~msiymdvlnifiriv~il~g 331 (336)
T KOG1630|consen 306 DPINACMSIYMDVLNIFIRIVMILGG 331 (336)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999985
No 8
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=96.88 E-value=0.01 Score=46.51 Aligned_cols=91 Identities=15% Similarity=0.320 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc--------hhHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCchhHHHHHHHHH
Q psy15655 19 ESPVLFVCVIVLMIFGIVMIFFH--------GKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEYIFASLNLY 90 (110)
Q Consensus 19 ~g~~L~~~l~~liv~~l~~~f~~--------~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~i~~Al~LY 90 (110)
+.++...+..+..++.++++... +.++.+.++.+++++=+.-++.|...+-++- ++...++..=.+|+.|=
T Consensus 176 f~~iv~~a~~gi~~~~Lv~~vl~lf~~~l~~~gplgI~~slv~v~iAa~sLllDFd~Ie~~v-~~gaPk~~eW~~AfGL~ 254 (274)
T PF12811_consen 176 FRRIVMIATFGIALFYLVNLVLSLFVGSLRDGGPLGIGFSLVVVGIAALSLLLDFDFIEQGV-RQGAPKKMEWYAAFGLL 254 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HcCCChhhHHHHHHHHH
Confidence 34466666666666666653321 3467889999999999999999999996542 23322333456999999
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q psy15655 91 LDVINIFLSILQILGAANSD 110 (110)
Q Consensus 91 lDiinlFl~iL~il~~~~~d 110 (110)
..+|=+++.|||+|+.-+||
T Consensus 255 vTLVWLYlEILRLL~~l~~~ 274 (274)
T PF12811_consen 255 VTLVWLYLEILRLLSKLQND 274 (274)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999987766
No 9
>COG4760 Predicted membrane protein [Function unknown]
Probab=68.42 E-value=53 Score=25.39 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHh--HHhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy15655 51 SLGAILFSVYLIYDT--QLMIGGNHRYSISPEEYIFASLNLYLDVINIFLSILQILGAANS 109 (110)
Q Consensus 51 ~~g~~lFs~~i~yDt--q~i~~g~~~~~~~~~d~i~~Al~LYlDiinlFl~iL~il~~~~~ 109 (110)
++|+.-|+..+=+|. |++..|. .++..-..|+.|-...+=+.+.+||+++.-.|
T Consensus 220 cigiAAf~fllDFDaad~~vr~GA-----P~kmaWgvAlGL~VTLVWLY~EiLRLLSy~Qn 275 (276)
T COG4760 220 CIGIAAFSFLLDFDAADQMVRAGA-----PEKMAWGVALGLTVTLVWLYLEILRLLSYLQN 275 (276)
T ss_pred HHHHHHHHHHhhhhHHHHHHHcCC-----hhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Confidence 566667777777775 4444332 12345577999999999999999999986443
No 10
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=52.17 E-value=85 Score=27.66 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy15655 18 LESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLM 68 (110)
Q Consensus 18 ~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~~s~~g~~lFs~~i~yDtq~i 68 (110)
++-...+.++++..+..++-.|+.+.++..+...+..+++.+++...++.-
T Consensus 8 ~~l~~~~~~lI~~~iiliiv~f~~~~~l~~i~~l~~~~~~i~~l~~~~~~~ 58 (655)
T COG3887 8 RLLSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFY 58 (655)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666665555556666677777777777777777777777654
No 11
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=51.64 E-value=27 Score=20.82 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHh
Q psy15655 47 LIYASLGAILFSVYLIYDTQLM 68 (110)
Q Consensus 47 ~~~s~~g~~lFs~~i~yDtq~i 68 (110)
.+|.++..++||+|++.-|-+=
T Consensus 4 WvY~vi~gI~~S~ym~v~t~~e 25 (52)
T PF14147_consen 4 WVYFVIAGIIFSGYMAVKTAKE 25 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666678999999988764
No 12
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=51.55 E-value=84 Score=22.19 Aligned_cols=84 Identities=12% Similarity=0.207 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCchhHHHHHHHHHHHHHHHHHHH
Q psy15655 22 VLFVCVIVLMIFGIVMIFF-HGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEYIFASLNLYLDVINIFLSI 100 (110)
Q Consensus 22 ~L~~~l~~liv~~l~~~f~-~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~i~~Al~LYlDiinlFl~i 100 (110)
.+++......+.+++.+|. +.+..+...+.+.+++..++.++=.....+-..+.+ ..-.-.+..++=++.+-...
T Consensus 55 ~l~il~~l~~~lal~aIFlyKnR~lQ~~L~~~nill~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~lp~vaii~~~ 130 (149)
T PF14126_consen 55 PLFILLVLSAILALIAIFLYKNRKLQIRLCVLNILLNVGLYGLFAYFSLNLSGELG----ATFSFGIGFFLPLVAIIFLW 130 (149)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----chhhhHHHHHHHHHHHHHHH
Confidence 6666667777778888885 578888888877776555554444433332111111 22344667777777766555
Q ss_pred HHHHhhccC
Q psy15655 101 LQILGAANS 109 (110)
Q Consensus 101 L~il~~~~~ 109 (110)
|-.=+.++|
T Consensus 131 LA~r~I~kD 139 (149)
T PF14126_consen 131 LANRAIKKD 139 (149)
T ss_pred HHHHHhHHH
Confidence 544444444
No 13
>COG4243 Predicted membrane protein [Function unknown]
Probab=48.30 E-value=1e+02 Score=22.33 Aligned_cols=72 Identities=25% Similarity=0.411 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCchhHHHHHHHHHHHHHHH
Q psy15655 17 GLESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEYIFASLNLYLDVINI 96 (110)
Q Consensus 17 t~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~i~~Al~LYlDiinl 96 (110)
..+|..-|.+..+.-+..+...+-+-.+.......+....|+.|++|- |-++..|+++|+-+..+
T Consensus 71 ~llG~a~Ft~~~i~all~~~~~l~~~~~~~l~v~~~~g~~f~~yLiY~---------------e~~~~~alC~YCtv~h~ 135 (156)
T COG4243 71 SLLGIAYFTAVLIAALLGVAGVLERWTWIGLLVGSLVGSAFVPYLIYL---------------ELFVIGALCLYCTVAHL 135 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhhHhHHHHHHHH
Confidence 344444444444333333332212223334455556666799999982 44567799999999988
Q ss_pred HHHHHHH
Q psy15655 97 FLSILQI 103 (110)
Q Consensus 97 Fl~iL~i 103 (110)
+.-++-.
T Consensus 136 ~~l~~~v 142 (156)
T COG4243 136 SILLLFV 142 (156)
T ss_pred HHHHHHH
Confidence 8765544
No 14
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=44.19 E-value=1.1e+02 Score=22.42 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy15655 18 LESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLM 68 (110)
Q Consensus 18 ~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~~s~~g~~lFs~~i~yDtq~i 68 (110)
++|.+++-..+++++++++ .+++.+....+++.. ++-..++.|.-.+
T Consensus 76 ~i~e~fmP~alv~lv~~~v---~~~~~~~~~~~~~~~-~~~~~~iid~~~l 122 (170)
T PF11241_consen 76 NIGEFFMPVALVLLVLSFV---VPSPQVQLYVTLAMY-VLLLLVIIDGVIL 122 (170)
T ss_pred chHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4555666656666655555 344444444333332 3335555555444
No 15
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=39.48 E-value=1.5e+02 Score=21.54 Aligned_cols=61 Identities=8% Similarity=0.228 Sum_probs=36.8
Q ss_pred CCCCcCCcCchhhhHHHHHHHHHHHHHHHHHHHhchh--HHHHHHHHHHHHHHHHHHHHHhHHh
Q psy15655 7 GQPGYPPYGQGLESPVLFVCVIVLMIFGIVMIFFHGK--VMTLIYASLGAILFSVYLIYDTQLM 68 (110)
Q Consensus 7 ~~~~~~k~dft~~g~~L~~~l~~liv~~l~~~f~~~~--~~~~~~s~~g~~lFs~~i~yDtq~i 68 (110)
+.|.|+. +|..-.+.|++++.+.-+.-++-++.... +.+...-.+-.++.++.+.+|..-.
T Consensus 23 nkprFs~-~Fi~~HP~L~~~M~~~y~~~~~lm~~spy~G~~s~~~ftv~fv~m~~~llfDI~P~ 85 (155)
T PF10777_consen 23 NKPRFSS-SFIRNHPYLCLAMYAAYLAVAALMYYSPYFGLGSVWGFTVFFVVMAAFLLFDIKPR 85 (155)
T ss_pred CCccccH-HHHHhCcHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhccce
Confidence 3455554 55566788888877666655554544211 2233444455667788888988765
No 16
>PHA03048 IMV membrane protein; Provisional
Probab=36.98 E-value=1.3e+02 Score=20.04 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy15655 21 PVLFVCVIVLMIFGIVMIFF 40 (110)
Q Consensus 21 ~~L~~~l~~liv~~l~~~f~ 40 (110)
+.+..|.+.|+ ++.+-.|.
T Consensus 13 ~vli~GIiLL~-~aCIfAfi 31 (93)
T PHA03048 13 TALIGGIILLA-ASCIFAFV 31 (93)
T ss_pred hHHHHHHHHHH-HHHHHhhh
Confidence 34555544444 44444443
No 17
>KOG4474|consensus
Probab=34.98 E-value=2.2e+02 Score=22.25 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhc
Q psy15655 45 MTLIYASLGAILFSVYLIYDTQLMIG 70 (110)
Q Consensus 45 ~~~~~s~~g~~lFs~~i~yDtq~i~~ 70 (110)
.+...++--+.+.+||.+||+--+.-
T Consensus 80 ~~s~~~~~l~~fS~gYfiyD~vDm~~ 105 (253)
T KOG4474|consen 80 YHSLSAYQLLLFSAGYFIYDLVDMLM 105 (253)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 44566677788899999999998853
No 18
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=34.87 E-value=1.4e+02 Score=19.80 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q psy15655 19 ESPVLFVCVIVLMIFGIVMIFF 40 (110)
Q Consensus 19 ~g~~L~~~l~~liv~~l~~~f~ 40 (110)
+.+.+..|.+.|+++.+ -.|+
T Consensus 11 ~s~vli~GIiLL~~ACI-FAfi 31 (91)
T PHA02680 11 YSGVLICGVLLLTAACV-FAFV 31 (91)
T ss_pred ccHHHHHHHHHHHHHHH-Hhhh
Confidence 34556666555555444 4443
No 19
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=34.00 E-value=1.7e+02 Score=23.50 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=31.7
Q ss_pred CcCchhhhHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHH
Q psy15655 13 PYGQGLESPVLFVCVIVLMIFGIVMIFF---HGKVMTLIYASLGAILFSVYL 61 (110)
Q Consensus 13 k~dft~~g~~L~~~l~~liv~~l~~~f~---~~~~~~~~~s~~g~~lFs~~i 61 (110)
|.+....-.+...+.+.++++++.+++- -++++..++.-.|+++++..+
T Consensus 96 ~~~~~~i~~tF~~ssIlLl~~Siss~iG~YiLapl~~~i~~~~gAaila~iv 147 (299)
T PF05884_consen 96 KLSTSSIVETFSWSSILLLGFSISSFIGGYILAPLFGIIFGPFGAAILAYIV 147 (299)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 3444455556667777778877766543 257777777777777766544
No 20
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=33.98 E-value=1.3e+02 Score=19.22 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=15.9
Q ss_pred CcCCcCchh-hhHHHHHHHHHHHHHHHHHHHh
Q psy15655 10 GYPPYGQGL-ESPVLFVCVIVLMIFGIVMIFF 40 (110)
Q Consensus 10 ~~~k~dft~-~g~~L~~~l~~liv~~l~~~f~ 40 (110)
.+.|+.++. .|..++...+++++.++...+.
T Consensus 36 ~~D~~~l~r~~g~~~~~~~i~~li~~l~~~~~ 67 (97)
T PF12650_consen 36 KYDKKKLCRFMGKFMLIIGIILLIGGLLSFFQ 67 (97)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444443 3555666566666666644333
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.75 E-value=1.7e+02 Score=20.68 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15655 46 TLIYASLGAILFSVYLI 62 (110)
Q Consensus 46 ~~~~s~~g~~lFs~~i~ 62 (110)
......+|++++++=+.
T Consensus 42 g~~~lAlg~vL~~~g~~ 58 (191)
T PF04156_consen 42 GIALLALGVVLLSLGLL 58 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555554443
No 22
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.05 E-value=1.4e+02 Score=21.58 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=12.3
Q ss_pred CCCCCcCCcCchhhhHHHHH
Q psy15655 6 GGQPGYPPYGQGLESPVLFV 25 (110)
Q Consensus 6 ~~~~~~~k~dft~~g~~L~~ 25 (110)
.+++++|.-|++.+.+-++.
T Consensus 17 ~~~~gmp~ld~~t~~~q~~~ 36 (181)
T PRK13454 17 ASAPGMPQLDFSTFPNQIFW 36 (181)
T ss_pred cCCCCCCCCcHHhcchHHHH
Confidence 35668888899654433333
No 23
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=29.86 E-value=1.7e+02 Score=19.41 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy15655 51 SLGAILFSVYLIYDTQL 67 (110)
Q Consensus 51 ~~g~~lFs~~i~yDtq~ 67 (110)
.+|+++--+.++|++..
T Consensus 53 I~giil~lG~~i~s~yg 69 (92)
T PF05767_consen 53 ILGIILTLGIVIFSMYG 69 (92)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45556666666666663
No 24
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=28.86 E-value=2e+02 Score=19.93 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=18.3
Q ss_pred CCCCCCcCCcCchhhhHHHHHHHHHHHHH
Q psy15655 5 PGGQPGYPPYGQGLESPVLFVCVIVLMIF 33 (110)
Q Consensus 5 ~~~~~~~~k~dft~~g~~L~~~l~~liv~ 33 (110)
|...+.++..|-..++....+|+..+++-
T Consensus 53 P~~kv~~~~~D~~~l~~~~vvg~v~~~~~ 81 (141)
T PF12576_consen 53 PEKKVRMRPFDRVKLGVSAVVGGVAVFVK 81 (141)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666667777776666666655543
No 25
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.32 E-value=1.8e+02 Score=23.11 Aligned_cols=54 Identities=13% Similarity=-0.024 Sum_probs=27.4
Q ss_pred cCchhhhHHHHHHHH-HHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHHHHHHhHH
Q psy15655 14 YGQGLESPVLFVCVI-VLMIFGIVMIFFHG---KVMTLIYASLGAILFSVYLIYDTQL 67 (110)
Q Consensus 14 ~dft~~g~~L~~~l~-~liv~~l~~~f~~~---~~~~~~~s~~g~~lFs~~i~yDtq~ 67 (110)
..++.+++.|..|+. ++....+...|+.. ..+-...+++|..++...-.+|.++
T Consensus 27 ~~~~~~~g~l~ggl~~gl~~~~~~~~f~gia~~~~~l~l~~lig~~~~~~~r~f~~~r 84 (281)
T COG4395 27 SFFSGMLGGLAGGLLMGLSGMFFGGLFFGIAAFLIFLLLITLIGFVIMLEMRFFDPYR 84 (281)
T ss_pred chhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 455555555555443 22222233333331 2234556677777777777777533
No 26
>PRK05415 hypothetical protein; Provisional
Probab=26.57 E-value=3.5e+02 Score=21.96 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHH-------HHHHhchhHHHHHHHHHHHH
Q psy15655 17 GLESPVLFVCVIVLMIFGI-------VMIFFHGKVMTLIYASLGAI 55 (110)
Q Consensus 17 t~~g~~L~~~l~~liv~~l-------~~~f~~~~~~~~~~s~~g~~ 55 (110)
+.|++.+..++.++.+..+ ...|-+++|+....+.++.+
T Consensus 64 ~~w~~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~wlg~~~~~~~~~ 109 (341)
T PRK05415 64 SLWRKLLWGGLGLLGSLVVGQAVQWLRDAFQRSDWLGLGAAVVGAL 109 (341)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5666666555555554443 23444577877665544433
No 27
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=26.10 E-value=2.1e+02 Score=21.88 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=23.9
Q ss_pred cCCcCchhhhHHHHHHHHHHHHHHH-HHHHhchhHHHHHHHHHHHHH
Q psy15655 11 YPPYGQGLESPVLFVCVIVLMIFGI-VMIFFHGKVMTLIYASLGAIL 56 (110)
Q Consensus 11 ~~k~dft~~g~~L~~~l~~liv~~l-~~~f~~~~~~~~~~s~~g~~l 56 (110)
+||+..-.+...+..+..+.+++++ +++++++.++..+......++
T Consensus 19 ~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l 65 (224)
T PF13829_consen 19 MTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLL 65 (224)
T ss_pred HHHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3555555666566555554444443 445566555555555443333
No 28
>KOG2678|consensus
Probab=25.92 E-value=74 Score=24.62 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=19.0
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHh
Q psy15655 14 YGQGLESPVLFVCVIVLMIFGIVMIFF 40 (110)
Q Consensus 14 ~dft~~g~~L~~~l~~liv~~l~~~f~ 40 (110)
+|-+...-++.++++++++++++++++
T Consensus 209 y~ksk~s~wf~~~miI~v~~sFVsMil 235 (244)
T KOG2678|consen 209 YDKSKLSYWFYITMIIFVILSFVSMIL 235 (244)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444556778888888888888765
No 29
>PHA02898 virion envelope protein; Provisional
Probab=24.74 E-value=2.2e+02 Score=18.90 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhHHhhc
Q psy15655 51 SLGAILFSVYLIYDTQLMIG 70 (110)
Q Consensus 51 ~~g~~lFs~~i~yDtq~i~~ 70 (110)
.+|.++--|.++|++..-..
T Consensus 53 Ilgivl~lG~~ifs~y~r~C 72 (92)
T PHA02898 53 ILAIILILGIIFFKGYNMFC 72 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 45666667777777777543
No 30
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=23.97 E-value=1.2e+02 Score=20.94 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhHHh
Q psy15655 51 SLGAILFSVYLIYDTQLM 68 (110)
Q Consensus 51 ~~g~~lFs~~i~yDtq~i 68 (110)
.+.+.+|+.++++.|-++
T Consensus 30 ~~~v~lfGlFL~~Qt~~l 47 (116)
T PF11317_consen 30 GLVVALFGLFLLFQTTRL 47 (116)
T ss_pred HHHHHHHHHHHHHhheeE
Confidence 346668899999999988
No 31
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=23.92 E-value=3e+02 Score=20.31 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=20.9
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHhHHhhccccccc
Q psy15655 37 MIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYS 76 (110)
Q Consensus 37 ~~f~~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g~~~~~ 76 (110)
..+.+.+.....+ ..|++.=+.-+.==++++++ |||+
T Consensus 164 ~l~i~~~~~~~~I-~lGi~~q~~tllPi~~k~~~--~~~~ 200 (210)
T PRK01100 164 TLLIPFAEMKTLI-MVGSLFQVISINPITYKLLN--RRYK 200 (210)
T ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--hhhc
Confidence 4445544433333 56777666666666677775 4553
No 32
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=23.45 E-value=2.1e+02 Score=21.27 Aligned_cols=30 Identities=7% Similarity=0.132 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccccccCCchhH
Q psy15655 50 ASLGAILFSVYLIYDTQLMIGGNHRYSISPEEY 82 (110)
Q Consensus 50 s~~g~~lFs~~i~yDtq~i~~g~~~~~~~~~d~ 82 (110)
...+++++.++=..|.+.+. +-.+.+..|+
T Consensus 249 ~La~ili~~~~~l~~~~~~~---~~~~~~~~d~ 278 (280)
T PF00916_consen 249 VLAAILIVVGISLIDWSSLR---RLWRVSKADF 278 (280)
T ss_pred HHHHHHHHHHHhhcCHHHHH---HHhcCChhhe
Confidence 34577888888899998885 2233455554
No 33
>PHA02513 V1 structural protein V1; Reviewed
Probab=23.25 E-value=1.2e+02 Score=21.07 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=21.6
Q ss_pred CCCCCCcCCcCchhhhHHHHHHHHHHHHHHH
Q psy15655 5 PGGQPGYPPYGQGLESPVLFVCVIVLMIFGI 35 (110)
Q Consensus 5 ~~~~~~~~k~dft~~g~~L~~~l~~liv~~l 35 (110)
|.+||..||-+=+..+.+++...+.++..-+
T Consensus 53 a~~npkltkge~~n~k~ii~L~IFIliGivl 83 (135)
T PHA02513 53 AKANPKLTKGEGTNIGVLLGLFIFILIGIVL 83 (135)
T ss_pred HhcCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 4578899998888888777665555554433
No 34
>PHA00027 lys lysis protein
Probab=22.70 E-value=1.9e+02 Score=17.41 Aligned_cols=27 Identities=48% Similarity=0.816 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHH-HHHHHHH-HHHHHH
Q psy15655 78 SPEEYIFASLNLYL-DVINIFL-SILQIL 104 (110)
Q Consensus 78 ~~~d~i~~Al~LYl-DiinlFl-~iL~il 104 (110)
+..-||.-++.+++ ||-|+|+ .+++++
T Consensus 18 S~~LYVlI~LAIfLS~FTn~~l~sil~~l 46 (58)
T PHA00027 18 SKRLYVLIALAIFLSDFTNIFLHSILEAL 46 (58)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34459999999886 7888887 344443
No 35
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=21.81 E-value=3.2e+02 Score=20.27 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh---------------chhHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Q psy15655 18 LESPVLFVCVIVLMIFGIVMIFF---------------HGKVMTLIYASLGAILFSVYLIYDTQLMIGG 71 (110)
Q Consensus 18 ~~g~~L~~~l~~liv~~l~~~f~---------------~~~~~~~~~s~~g~~lFs~~i~yDtq~i~~g 71 (110)
.|..+++.|.++++.+|+-+.+- |-......|..+|+ ++|.|+-+-.---+++
T Consensus 20 ~wa~ii~~G~lGFll~G~sSYl~~nll~~~~~~~i~FiPQGivM~FYGi~gl-~ls~Ylw~tI~wdVG~ 87 (180)
T PF02392_consen 20 FWAFIIFLGGLGFLLVGISSYLGKNLLPFSDSSQIPFIPQGIVMCFYGIAGL-FLSFYLWLTIFWDVGG 87 (180)
T ss_pred HHHHHHHHhhHHHHHhHHHHHhCCCccccCCcceeeEECccHHHHHHHHHHH-HHHHHHhhheeEEccc
Confidence 56888999999999999977541 22244455555554 4677776544433443
No 36
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=21.73 E-value=91 Score=18.57 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q psy15655 52 LGAILFSVYLIYD 64 (110)
Q Consensus 52 ~g~~lFs~~i~yD 64 (110)
+|++.|++|+++|
T Consensus 33 ~G~aaf~~~v~~E 45 (57)
T PF08122_consen 33 IGFAAFAVYVAVE 45 (57)
T ss_pred HHHHHHHHHHHHH
Confidence 4777899999999
No 37
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=20.03 E-value=2.1e+02 Score=17.02 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q psy15655 30 LMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYD 64 (110)
Q Consensus 30 liv~~l~~~f~~~~~~~~~~s~~g~~lFs~~i~yD 64 (110)
+.+.+.++-+-.-..+....+.+.+++|.+|.+-.
T Consensus 8 la~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimT 42 (52)
T PF10958_consen 8 LAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMT 42 (52)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554445778888888999999988753
Done!