Query psy15655
Match_columns 110
No_of_seqs 111 out of 1049
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 18:14:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pfi_A Major coat protein of P 29.9 43 0.0015 18.4 2.4 25 13-37 16-40 (46)
2 2gsm_B Cytochrome C oxidase su 23.3 2.1E+02 0.0073 20.9 6.1 9 2-10 17-25 (262)
3 2lqc_B Voltage-dependent L-typ 27.9 19 0.00064 17.6 0.0 9 1-9 6-14 (26)
4 1ym0_B Fibrinotic enzyme compo 21.8 54 0.0019 15.8 1.7 12 2-13 4-15 (27)
5 3hb3_B Cytochrome C oxidase su 19.5 2.8E+02 0.0095 20.8 6.1 9 2-10 48-56 (298)
6 1rh5_B Preprotein translocase 13.2 2.3E+02 0.0078 17.0 3.4 24 18-41 33-56 (74)
7 3mp7_B Preprotein translocase 13.0 2.2E+02 0.0076 16.3 3.9 24 18-41 29-52 (61)
8 2ww9_B Protein transport prote 10.6 3.2E+02 0.011 16.7 4.0 28 13-40 41-68 (80)
9 3arc_J Photosystem II reaction 9.4 2.6E+02 0.0089 14.9 3.1 19 23-41 12-30 (40)
10 2wwb_B SEC61gamma, protein tra 7.2 3.4E+02 0.012 15.9 2.6 30 12-41 26-55 (68)
No 1
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=29.88 E-value=43 Score=18.39 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=20.0
Q ss_pred CcCchhhhHHHHHHHHHHHHHHHHH
Q psy15655 13 PYGQGLESPVLFVCVIVLMIFGIVM 37 (110)
Q Consensus 13 k~dft~~g~~L~~~l~~liv~~l~~ 37 (110)
|.|.++.++.+..++..+.+++++.
T Consensus 16 ~~Dm~si~~~IVGaLvil~VAGLiy 40 (46)
T 1pfi_A 16 QGDMKAIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888754
No 2
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=23.27 E-value=2.1e+02 Score=20.89 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=4.6
Q ss_pred CcCCCCCCC
Q psy15655 2 SWQPGGQPG 10 (110)
Q Consensus 2 ~~~~~~~~~ 10 (110)
.||++++|.
T Consensus 17 ~~~~~asp~ 25 (262)
T 2gsm_B 17 GFQPSASPV 25 (262)
T ss_dssp SCCCCCSHH
T ss_pred cCCCCCCHH
Confidence 355555553
No 3
>2lqc_B Voltage-dependent L-type calcium channel subunit; metal binding protein-transport protein complex; NMR {Homo sapiens}
Probab=27.88 E-value=19 Score=17.60 Aligned_cols=9 Identities=33% Similarity=0.719 Sum_probs=5.8
Q ss_pred CCcCCCCCC
Q psy15655 1 MSWQPGGQP 9 (110)
Q Consensus 1 ~~~~~~~~~ 9 (110)
.|||++...
T Consensus 6 LSWQAAIdA 14 (26)
T 2lqc_B 6 LSWQAAIDA 14 (26)
Confidence 478887543
No 4
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=21.85 E-value=54 Score=15.83 Aligned_cols=12 Identities=50% Similarity=1.043 Sum_probs=9.7
Q ss_pred CcCCCCCCCcCC
Q psy15655 2 SWQPGGQPGYPP 13 (110)
Q Consensus 2 ~~~~~~~~~~~k 13 (110)
+|-||+|-..+.
T Consensus 4 vwypggqcgvsq 15 (27)
T 1ym0_B 4 VWYPGGQCGVSQ 15 (27)
T ss_dssp CSCTTSCCSCCS
T ss_pred eeccCCccccee
Confidence 799999987664
No 5
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=19.51 E-value=2.8e+02 Score=20.84 Aligned_cols=9 Identities=33% Similarity=0.707 Sum_probs=4.8
Q ss_pred CcCCCCCCC
Q psy15655 2 SWQPGGQPG 10 (110)
Q Consensus 2 ~~~~~~~~~ 10 (110)
.||+++.|.
T Consensus 48 ~fqd~aSp~ 56 (298)
T 3hb3_B 48 NFQPASSPL 56 (298)
T ss_dssp SCSCCCSHH
T ss_pred CCCCCCCHH
Confidence 455555553
No 6
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=13.17 E-value=2.3e+02 Score=16.98 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhc
Q psy15655 18 LESPVLFVCVIVLMIFGIVMIFFH 41 (110)
Q Consensus 18 ~~g~~L~~~l~~liv~~l~~~f~~ 41 (110)
-+....-+.++++++.|+++.+++
T Consensus 33 EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 33 EYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466667777777787776664
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=13.01 E-value=2.2e+02 Score=16.33 Aligned_cols=24 Identities=4% Similarity=0.193 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhc
Q psy15655 18 LESPVLFVCVIVLMIFGIVMIFFH 41 (110)
Q Consensus 18 ~~g~~L~~~l~~liv~~l~~~f~~ 41 (110)
-+....-+..+++++.|+++.+++
T Consensus 29 Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 29 TYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666777777788776664
No 8
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=10.62 E-value=3.2e+02 Score=16.66 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=18.4
Q ss_pred CcCchhhhHHHHHHHHHHHHHHHHHHHh
Q psy15655 13 PYGQGLESPVLFVCVIVLMIFGIVMIFF 40 (110)
Q Consensus 13 k~dft~~g~~L~~~l~~liv~~l~~~f~ 40 (110)
|-|-.-+...+.+.++++++.|+++.+.
T Consensus 41 KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 41 KPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556777777788888888764
No 9
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=9.44 E-value=2.6e+02 Score=14.91 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy15655 23 LFVCVIVLMIFGIVMIFFH 41 (110)
Q Consensus 23 L~~~l~~liv~~l~~~f~~ 41 (110)
+.....++.+.+++.+||.
T Consensus 12 lvgtv~G~~vi~~~giFfy 30 (40)
T 3arc_J 12 IVATVAGMGVIVIVGLFFY 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehhhhhhheeeEEEe
Confidence 3333445666777777774
No 10
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=7.20 E-value=3.4e+02 Score=15.90 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCcCchhhhHHHHHHHHHHHHHHHHHHHhc
Q psy15655 12 PPYGQGLESPVLFVCVIVLMIFGIVMIFFH 41 (110)
Q Consensus 12 ~k~dft~~g~~L~~~l~~liv~~l~~~f~~ 41 (110)
+|-|-.-+....-+..+++++.|+++.+..
T Consensus 26 ~KPdr~Ef~~iak~~~iG~~i~G~IGf~Ik 55 (68)
T 2wwb_B 26 TKPDRKEFQKIAMATAIGFAIMGFIGFFVK 55 (68)
T ss_dssp CCCCTHHHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!