Query psy15655
Match_columns 110
No_of_seqs 111 out of 1049
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 18:14:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15655.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15655hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ehbb2 f.17.2.1 (B:1-107) Bac 52.4 20 0.0014 21.3 5.8 11 43-53 75-85 (107)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 45.5 25 0.0018 20.4 5.3 22 44-65 70-97 (100)
3 d1wr0a1 a.7.14.1 (A:5-81) Vacu 8.1 1.6E+02 0.012 15.7 2.9 20 84-103 28-47 (77)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 7.2 1.5E+02 0.011 14.0 3.1 15 27-41 10-24 (34)
5 d1rh5b_ f.23.28.1 (B:) Preprot 6.4 2.1E+02 0.015 15.0 4.2 23 19-41 23-45 (56)
6 d1wfda_ a.7.14.1 (A:) Hypothet 5.9 2.3E+02 0.017 15.6 2.9 19 84-102 32-50 (93)
7 d1xlya_ a.232.1.1 (A:) RNA-bin 5.1 1.8E+02 0.013 19.5 2.2 21 85-105 21-41 (232)
8 d1uspa_ d.227.1.1 (A:) Organic 4.6 1.9E+02 0.014 16.4 1.9 14 75-88 40-53 (137)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 4.5 2.2E+02 0.016 13.0 3.1 17 47-63 17-33 (34)
10 d1n2fa_ d.227.1.1 (A:) Organic 4.3 2E+02 0.015 16.5 2.0 20 69-88 39-58 (142)
No 1
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=52.36 E-value=20 Score=21.28 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=6.3
Q ss_pred hHHHHHHHHHH
Q psy15655 43 KVMTLIYASLG 53 (110)
Q Consensus 43 ~~~~~~~s~~g 53 (110)
..+|.+...+=
T Consensus 75 ~~lEi~WTviP 85 (107)
T d3ehbb2 75 TPIEVIWTLVP 85 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45676666443
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=45.51 E-value=25 Score=20.43 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=11.0
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHh
Q psy15655 44 VMTLIYASL------GAILFSVYLIYDT 65 (110)
Q Consensus 44 ~~~~~~s~~------g~~lFs~~i~yDt 65 (110)
.+|.+...+ ++.+.|.-++|+.
T Consensus 70 ~LEiiWTviP~lILi~l~~pS~~~ly~m 97 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIGAFSLPVLFNQ 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655533 4444555555543
No 3
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.05 E-value=1.6e+02 Score=15.67 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15655 84 FASLNLYLDVINIFLSILQI 103 (110)
Q Consensus 84 ~~Al~LYlDiinlFl~iL~i 103 (110)
..|+.+|..-++.|+..++-
T Consensus 28 ~~A~~~Y~~a~~~l~~~l~~ 47 (77)
T d1wr0a1 28 EEALQLYQHAVQYFLHVVKY 47 (77)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34899999999999987763
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.17 E-value=1.5e+02 Score=14.01 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhc
Q psy15655 27 VIVLMIFGIVMIFFH 41 (110)
Q Consensus 27 l~~liv~~l~~~f~~ 41 (110)
..++.+++++++||.
T Consensus 10 v~G~~vi~~vG~FfY 24 (34)
T d2axtj1 10 VAGMGVIVIVGLFFY 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhhHhheeeeee
Confidence 345556667777763
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.42 E-value=2.1e+02 Score=14.97 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q psy15655 19 ESPVLFVCVIVLMIFGIVMIFFH 41 (110)
Q Consensus 19 ~g~~L~~~l~~liv~~l~~~f~~ 41 (110)
+.....++.+++++.|+++.+..
T Consensus 23 f~~ia~v~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 23 YLAVAKVTALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777777776553
No 6
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.90 E-value=2.3e+02 Score=15.62 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15655 84 FASLNLYLDVINIFLSILQ 102 (110)
Q Consensus 84 ~~Al~LYlDiinlFl~iL~ 102 (110)
..|+.+|..-++.|+..++
T Consensus 32 ~eA~~~Y~~aie~l~~~~~ 50 (93)
T d1wfda_ 32 QQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5799999999999998765
No 7
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.14 E-value=1.8e+02 Score=19.49 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy15655 85 ASLNLYLDVINIFLSILQILG 105 (110)
Q Consensus 85 ~Al~LYlDiinlFl~iL~il~ 105 (110)
.=++.|.|+.|=|+..+|=.+
T Consensus 21 ~YiS~yv~~LNk~I~~lRrvs 41 (232)
T d1xlya_ 21 RYLSSYIHVLNKFISHLRRVA 41 (232)
T ss_dssp HHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999998886543
No 8
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.55 E-value=1.9e+02 Score=16.42 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=10.5
Q ss_pred ccCCchhHHHHHHH
Q psy15655 75 YSISPEEYIFASLN 88 (110)
Q Consensus 75 ~~~~~~d~i~~Al~ 88 (110)
-..+|.|++.+|+.
T Consensus 40 ~g~~P~elllaAla 53 (137)
T d1uspa_ 40 PGTNPEQLFAAGYA 53 (137)
T ss_dssp SCBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 34578999988875
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.47 E-value=2.2e+02 Score=13.03 Aligned_cols=17 Identities=18% Similarity=0.379 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15655 47 LIYASLGAILFSVYLIY 63 (110)
Q Consensus 47 ~~~s~~g~~lFs~~i~y 63 (110)
+..|...+++|...++|
T Consensus 17 lafslamlfvfialiay 33 (34)
T d1xmeb2 17 LAFSLAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34444444555555544
No 10
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=4.34 E-value=2e+02 Score=16.50 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=0.0
Q ss_pred hcccccccCCchhHHHHHHH
Q psy15655 69 IGGNHRYSISPEEYIFASLN 88 (110)
Q Consensus 69 ~~g~~~~~~~~~d~i~~Al~ 88 (110)
.+|...-..+|+|++.+|+.
T Consensus 39 ~gG~~~~g~~P~elllaala 58 (142)
T d1n2fa_ 39 MGGQGGAATNPEQLFAAGYS 58 (142)
T ss_dssp GTCSCCSSBCHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHH
Done!