RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15655
(110 letters)
>gnl|CDD|198410 cd10428, LFG_like, Proteins similar to and including lifeguard
(LFG), a putative regulator of apoptosis. Lifeguard
(LFG) inhibits Fas-mediated apoptosis and interacts with
the death receptor FasR/CD95/Apo1. LFG has been shown to
interact with Bax and is supposed to be integral to
cellular membranes such as the ER. A close homolog,
PP1201 or RECS1, appears located in the Golgi
compartment and also interacts with the Fas receptor
CD95/Apo1. PP1201 is expressed in response to shear
stress.
Length = 217
Score = 122 bits (309), Expect = 2e-36
Identities = 54/86 (62%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Query: 20 SPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISP 79
VLFV IVL+IFGIV IFF+ K + ++YASLGA+LFS+YL DTQL++GG Y +SP
Sbjct: 133 GGVLFVLSIVLLIFGIVAIFFYVKWLHIVYASLGALLFSLYLAVDTQLLMGGRK-YELSP 191
Query: 80 EEYIFASLNLYLDVINIFLSILQILG 105
EEYIFA+LN+Y+D++NIFL ILQ++G
Sbjct: 192 EEYIFAALNIYVDIVNIFLYILQLIG 217
>gnl|CDD|198411 cd10429, GAAP_like, Golgi antiapoptotic protein. GAAP (or
transmembrane BAX inhibitor motif containing 4) is a
regulator of apoptosis that is related to the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. Human GAAP has been linked
to the modulation of intracellular fluxes of Ca(2+), by
suppressing influx from the extracellular medium and
reducing release from intracellular stores. A viral
homolog (vaccinia virus vGAAP) acts similar to its human
counterpart in inhibiting apoptosis.
Length = 233
Score = 92.7 bits (231), Expect = 1e-24
Identities = 42/89 (47%), Positives = 63/89 (70%), Gaps = 6/89 (6%)
Query: 21 PVLFVCVIVLMIFGIVMIFF-HGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISP 79
+LF+ + L++ ++ FF + L+YA LGA+LFS Y++YDTQL++ R S P
Sbjct: 150 ALLFILLWALILLALIFQFFPYSPTFELVYAGLGALLFSGYIVYDTQLIM---KRLS--P 204
Query: 80 EEYIFASLNLYLDVINIFLSILQILGAAN 108
+EYI A+++LYLD+IN+FLSIL+IL A N
Sbjct: 205 DEYILAAISLYLDIINLFLSILRILAAMN 233
>gnl|CDD|198414 cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor
(BI)-1/YccA-like proteins. This family is comprised of
bacterial relatives of the mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. In plants, BI-1 like
proteins play a role in pathogen resistance. A
characterized prokaryotic member, Escherichia coli YccA,
has been shown to interact with ATP-dependent protease
FtsH, which degrades abnormal membrane proteins as part
of a quality control mechanism to keep the integrity of
biological membranes.
Length = 211
Score = 70.7 bits (174), Expect = 2e-16
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 23 LFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEE- 81
LF+ +I L+I +V IF + +++G ++FS + YDTQ +
Sbjct: 127 LFMGLIGLIIASLVNIFLQSSALQFAISAIGVLIFSGLIAYDTQRIKRMYEAGGGESGYK 186
Query: 82 -YIFASLNLYLDVINIFLSILQILG 105
I +L+LYLD IN+FL +L++ G
Sbjct: 187 DAIMGALSLYLDFINLFLFLLRLFG 211
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 70.7 bits (174), Expect = 2e-16
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 21 PVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPE 80
LF +I L++ +V IF ++L +++G ++FS ++YDTQ + G +
Sbjct: 126 GFLFAGLIGLIVASLVNIFLPSSALSLAISAIGVLIFSGLILYDTQRIKEGGETD----D 181
Query: 81 EYIFASLNLYLDVINIFLSILQIL 104
YI A+L+LYLD IN+FL +L+IL
Sbjct: 182 YYILAALSLYLDFINLFLYLLRIL 205
>gnl|CDD|198409 cd06181, BI-1-like, BAX inhibitor (BI)-1/YccA-like protein family.
Mammalian members of the BAX inhibitor (BI)-1 like
family of small transmembrane proteins have been shown
to have an antiapoptotic effect either by stimulating
the antiapoptotic function of Bcl-2, a
well-characterized oncogene, or by inhibiting the
proapoptotic effect of Bax, another member of the Bcl-2
family. Their broad tissue distribution and high degree
of conservation suggests an important regulatory role.
This superfamily also contains the lifeguard(LFG)-like
proteins and other subfamilies which appear to be
related by common descent and also function as
inhibitors of apoptosis. In plants, BI-1 like proteins
play a role in pathogen resistance. A prokaryotic
member, Escherichia coli YccA, has been shown to
interact with ATP-dependent protease FtsH, which
degrades abnormal membrane proteins as part of a quality
control mechanism to keep the integrity of biological
membranes.
Length = 202
Score = 69.4 bits (170), Expect = 5e-16
Identities = 33/84 (39%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 22 VLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEE 81
L + L++ ++ FF+ + L+ A++G +LF +L+YDTQL+I H+ + PE+
Sbjct: 122 PLMAGLGFLLLSFLLNTFFYSPWLHLVAAAVGLVLFCGFLLYDTQLII---HKAEVGPED 178
Query: 82 YIFASLNLYLDVINIFLSILQILG 105
YI A ++LYLD+INIF+ +L IL
Sbjct: 179 YINACISLYLDIINIFIRLLTILA 202
>gnl|CDD|223742 COG0670, COG0670, Integral membrane protein, interacts with FtsH
[General function prediction only].
Length = 233
Score = 63.5 bits (155), Expect = 2e-13
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 23 LFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEY 82
LF+ +I L+I +V IF + L + LG ++FS + YDTQ + R
Sbjct: 149 LFMALIGLIIASLVNIFLGSSALHLAISVLGVLIFSGLIAYDTQNIK----RMEGGERLA 204
Query: 83 IFASLNLYLDVINIFLSILQILGAANSD 110
I +L+LYLD IN+FLS+L+ILG ++
Sbjct: 205 IMGALSLYLDFINLFLSLLRILGILSNR 232
>gnl|CDD|198415 cd10433, YccA_like, YccA-like proteins. A prokaryotic member of
the BAX inhibitor (BI)-1 like family of small
transmembrane proteins, Escherichia coli YccA, has been
shown to interact with ATP-dependent protease FtsH,
which degrades abnormal membrane proteins as part of a
quality control mechanism to keep the integrity of
biological membranes.
Length = 205
Score = 55.7 bits (135), Expect = 8e-11
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 23 LFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEY 82
LFV IVL++ + IF ++L ++ + S +++YDT +I G Y
Sbjct: 125 LFVGAIVLLLAAVANIFLQIPALSLAISAAFVLFSSGFILYDTSRIIHGGET------NY 178
Query: 83 IFASLNLYLDVINIFLSILQILGAANS 109
I A+++LY+ + N+F+S+L +LGA +
Sbjct: 179 IMATVSLYVSIYNLFVSLLNLLGAFSG 205
>gnl|CDD|198412 cd10430, BI-1, BAX inhibitor (BI)-1. Mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins have been shown to have an antiapoptotic effect
either by stimulating the antiapoptotic function of
Bcl-2, a well-characterized oncogene, or by inhibiting
the proapoptotic effect of Bax, another member of the
Bcl-2 family. Their broad tissue distribution and high
degree of conservation suggests an important regulatory
role. In plants, BI-1 like proteins play a role in
pathogen resistance.
Length = 213
Score = 53.8 bits (130), Expect = 4e-10
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 23 LFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISPEEY 82
L + +L++ + IF K + LG ++F ++++DTQ++I + +Y
Sbjct: 130 LSSALSILLLVSLANIFGGSKFLFQAELYLGLLVFCGFVLFDTQMII---EKAENGDRDY 186
Query: 83 IFASLNLYLDVINIFLSILQIL 104
I+ +L+L++D + +F +L IL
Sbjct: 187 IWHALDLFVDFVALFRRLLIIL 208
>gnl|CDD|198413 cd10431, GHITM, Growth-hormone inducible transmembrane protein.
GHITM appears to be ubiquitiously expressed in mammalian
cells and expression has also been observed in various
cancer cell lines. A cytoprotective function has been
suggested. It is closely related to the BAX inhibitor
(BI)-1 like family of small transmembrane proteins,
which have been shown to have an antiapoptotic effect.
Length = 264
Score = 47.4 bits (113), Expect = 2e-07
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 53 GAILFSVYLIYDTQLMIGGNHR------YSISPEEYIFASLNLYLDVINIFLSILQILGA 106
G +LF +L+YDTQ +I R Y + + I AS+++Y+D INIF+ ++ IL
Sbjct: 203 GLVLFGGFLLYDTQKII---KRAETHPLYGVRKYDPINASMSIYMDTINIFIRLVTILAG 259
Query: 107 ANS 109
+
Sbjct: 260 GGN 262
>gnl|CDD|182469 PRK10447, PRK10447, HflBKC-binding inner membrane protein;
Provisional.
Length = 219
Score = 35.2 bits (81), Expect = 0.003
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 20 SPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSISP 79
+L ++V++I + IF + L +++ ++ S ++++T +I G
Sbjct: 135 GGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHGGE------ 188
Query: 80 EEYIFASLNLYLDVINIFLSILQILGAANSD 110
YI A+++LY+ + NIF+S+L ILG A+ D
Sbjct: 189 TNYIRATVSLYVSLYNIFVSLLSILGFASRD 219
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 31.3 bits (71), Expect = 0.067
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 16 QGLESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGA--ILFSVYLIYDTQ------L 67
QGL ++ + ++V++I I+++ F GK +I A S D +
Sbjct: 5 QGLMPLLMLIAIVVVVILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVV 64
Query: 68 MIGGNHRYSISPEEYIFASLNLY-LDVIN 95
GG I + SL L+V
Sbjct: 65 RGGGAIVMPIF-QTIERMSLTTIKLEVEI 92
>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
modified GGDEF domain and a DHH domain [Signal
transduction mechanisms].
Length = 655
Score = 31.2 bits (71), Expect = 0.088
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 23 LFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMI--------GGNHR 74
+F+ +I I I++ F ++ I L + L+ T +++
Sbjct: 13 IFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQ 72
Query: 75 YSISPEEYIFASLNLYLDVI 94
S EE + N+ + +I
Sbjct: 73 AEKSLEEAL---TNMPIGII 89
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 26.9 bits (60), Expect = 2.2
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 23 LFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIG 70
L C+ + +I + ++ H + ASL A+ F L++ QL+IG
Sbjct: 327 LVACIALALIIFTLGVYQHATSEYMYLASLFALGF---LVFGPQLLIG 371
>gnl|CDD|225937 COG3402, COG3402, Uncharacterized conserved protein [Function
unknown].
Length = 161
Score = 26.2 bits (58), Expect = 2.8
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 18 LESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFS--VYLIYDTQLMIGGNHRY 75
E + + +++ + G+++ F A++ IL + V L QL+ RY
Sbjct: 20 QEWIPIALVLLIAVAAGVLLYFVGLDPNWSSVAAVAVILLAAVVTLFIIPQLVRYRVWRY 79
Query: 76 SISPEE 81
+ +E
Sbjct: 80 EVEEDE 85
>gnl|CDD|223205 COG0127, COG0127, Xanthosine triphosphate pyrophosphatase
[Nucleotide transport and metabolism].
Length = 194
Score = 26.4 bits (59), Expect = 3.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 24 FVCVIVLMIFGIVMIFFHGKV 44
FVCVIVL G I F G+V
Sbjct: 116 FVCVIVLARDGGEPIVFEGEV 136
>gnl|CDD|218364 pfam04987, PigN, Phosphatidylinositolglycan class N (PIG-N).
Phosphatidylinositolglycan class N (PIG-N) is a
mammalian homologue of the yeast protein MCD4P and is
expressed in the endoplasmic reticulum. PIG-N is
essential for glycosylphosphatidylinositol anchor
synthesis. Glycosylphosphatidylinositol (GPI)-anchored
proteins are cell surface-localised proteins that serve
many important cellular functions.
Length = 441
Score = 26.1 bits (58), Expect = 4.1
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 11 YPPYGQGLESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILF 57
L +L + + + + +V FFH ++++L++
Sbjct: 102 ELLSHISLLKLLLQLVLFLGVAELLVYGFFHREILSLLFLIFAFWPL 148
>gnl|CDD|225832 COG3295, COG3295, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 213
Score = 25.9 bits (57), Expect = 4.8
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 25 VCVIVLMIFGIVMIFFHGK--VMTLIYASLGAIL 56
V ++VL + G+ ++ H K + LG++L
Sbjct: 171 VALLVLALTGLALLVLHTKRRRVGWPLVGLGSVL 204
>gnl|CDD|131660 TIGR02611, TIGR02611, TIGR02611 family protein. Members of this
family are Actinobacterial putative proteins of about
150 amino acids in length with three apparent
transmembrane helix and an unusual motif with consensus
sequence PGPGW [Hypothetical proteins, Conserved].
Length = 121
Score = 25.5 bits (56), Expect = 5.2
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 20 SPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGGNHRYSI 77
P++ V V++I GI+ I G I+ L + S+ ++ +L+ G +Y
Sbjct: 25 RPLVLVVGWVVLIVGIITIPLPGPGWLTIFIGLA--ILSLEFVWAQRLLRWGVRKYDE 80
>gnl|CDD|225836 COG3299, XkdT, Uncharacterized homolog of phage Mu protein gp47
[Function unknown].
Length = 353
Score = 25.9 bits (57), Expect = 5.8
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 47 LIYASLGAILFSVYLIYDTQLMIGGNHRYSIS 78
+I + + A + SV + D L I + +IS
Sbjct: 305 VILSQIYAAISSVPGVIDFSLTIPLANALAIS 336
>gnl|CDD|199847 cd03865, M14_CPE, Peptidase M14 carboxypeptidase subfamily
N/E-like; Carboxypeptidase E subgroup. Peptidase M14
Carboxypeptidase (CP) E (CPE, also known as
carboxypeptidase H, and enkephalin convertase; EC
3.4.17.10) belongs to the N/E subfamily of the M14
family of metallocarboxypeptidases (MCPs).The M14 family
are zinc-binding CPs which hydrolyze single, C-terminal
amino acids from polypeptide chains, and have a
recognition site for the free C-terminal carboxyl group,
which is a key determinant of specificity. CPE is an
important enzyme responsible for the proteolytic
processing of prohormone intermediates (such as
pro-insulin, pro-opiomelanocortin, or
pro-gonadotropin-releasing hormone) by specifically
removing C-terminal basic residues. In addition, it has
been proposed that the regulated secretory pathway (RSP)
of the nervous and endocrine systems utilizes
membrane-bound CPE as a sorting receptor. A naturally
occurring point mutation in CPE reduces the stability of
the enzyme and causes its degradation, leading to an
accumulation of numerous neuroendocrine peptides that
result in obesity and hyperglycemia. Reduced CPE enzyme
and receptor activity could underlie abnormal placental
phenotypes from the observation that CPE is
down-regulated in enlarged placentas of interspecific
hybrid (interspecies hybrid placental dysplasia, IHPD)
and cloned mice.
Length = 323
Score = 25.4 bits (55), Expect = 8.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 70 GGNHRYSISPEEYIFASLNLYLDVINIFLS 99
G H YS P++ IF SL +N +S
Sbjct: 216 GSAHEYSACPDDAIFKSLARAYSSLNPAMS 245
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.147 0.451
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,921,219
Number of extensions: 535940
Number of successful extensions: 1683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1628
Number of HSP's successfully gapped: 284
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)